Build: #136 was successful

Job: default was successful

Stages & jobs

  1. Default Stage

Build log

The build generated 376 lines of output. Download or view full build log.

13-Mar-2017 14:42:25 Build MMDB - Medici 1 GWT - 1.5.2-fixes - default #136 (MMDB-MEDICI78-JOB1-136) started building on agent buildserver-1.os.ncsa.edu
13-Mar-2017 14:42:25 Remote agent on host buildserver-1.os.ncsa.edu
13-Mar-2017 14:42:25 Build working directory is /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1
13-Mar-2017 14:42:25 Executing build MMDB - Medici 1 GWT - 1.5.2-fixes - default #136 (MMDB-MEDICI78-JOB1-136)
13-Mar-2017 14:42:25 Starting task 'Source Code Checkout' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout'
13-Mar-2017 14:42:25 Build always requires a clean checkout
13-Mar-2017 14:42:25 Cleaning build directory '/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt'
13-Mar-2017 14:42:25 Build always requires a clean checkout
13-Mar-2017 14:42:25 Cleaning build directory '/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet'
13-Mar-2017 14:42:25 Updating source code to revision: 9fdee89c42e3f9bebf2fe408f52d58fdc8ed3632
13-Mar-2017 14:42:25 Creating local git repository in '/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/.git'.
13-Mar-2017 14:42:25 Initialized empty Git repository in /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/.git/
13-Mar-2017 14:42:25 Fetching 'refs/heads/1.5.2-fixes' from 'https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git'. Will try to do a shallow fetch.
13-Mar-2017 14:42:28 From https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web
13-Mar-2017 14:42:28 * [new branch]      1.5.2-fixes -> 1.5.2-fixes
13-Mar-2017 14:42:28 Checking out revision 9fdee89c42e3f9bebf2fe408f52d58fdc8ed3632.
13-Mar-2017 14:42:28 Switched to branch '1.5.2-fixes'
13-Mar-2017 14:42:28 Updated source code to revision: 9fdee89c42e3f9bebf2fe408f52d58fdc8ed3632
13-Mar-2017 14:42:28 Updating source code to revision: 0b0c4e05e8f4518f20b5ff7ffd272304deeab48e
13-Mar-2017 14:42:29 Creating local git repository in '/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/.git'.
13-Mar-2017 14:42:29 Initialized empty Git repository in /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/.git/
13-Mar-2017 14:42:29 Fetching 'refs/heads/master' from 'https://opensource.ncsa.illinois.edu/stash/scm/cbi/cet.git'. Will try to do a shallow fetch.
13-Mar-2017 14:42:31 From https://opensource.ncsa.illinois.edu/stash/scm/cbi/cet
13-Mar-2017 14:42:31 * [new branch]      master     -> master
13-Mar-2017 14:42:32 Checking out revision 0b0c4e05e8f4518f20b5ff7ffd272304deeab48e.
13-Mar-2017 14:42:35 Already on 'master'
13-Mar-2017 14:42:35 Updated source code to revision: 0b0c4e05e8f4518f20b5ff7ffd272304deeab48e
13-Mar-2017 14:42:35 Finished task 'Source Code Checkout' with result: Success
13-Mar-2017 14:42:35 Running pre-build action: VCS Version Collector
13-Mar-2017 14:42:35
Substituting variable: ${bamboo.repository.branch.name} with 1.5.2-fixes
13-Mar-2017 14:42:35
Substituting variable: ${bamboo.buildNumber} with 136
13-Mar-2017 14:42:35 Starting task 'Web App' of type 'com.atlassian.bamboo.plugins.ant:task.builder.ant'
13-Mar-2017 14:42:35
Beginning to execute external process for build 'MMDB - Medici 1 GWT - 1.5.2-fixes - default #136 (MMDB-MEDICI78-JOB1-136)'
... running command line:
/home/bamboo/apache-ant-1.9.4/bin/ant -Djava.io.tmpdir=/tmp/MMDB-MEDICI78-JOB1 bamboo -Dbamboo.version="1.5.2-fixes#136"
... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web
... using extra environment variables:
bamboo_planRepository_1_branch=1.5.2-fixes
bamboo_capability_system_builder_command_npm_6=/home/bamboo/node-v6.9.1/bin/npm
bamboo_planRepository_2_branch=master
bamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster
bamboo_repository_revision_number=9fdee89c42e3f9bebf2fe408f52d58fdc8ed3632
bamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/MMDB-MEDICI78-JOB1-136
bamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build
bamboo_planRepository_1_name=medici-gwt-web
bamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1
bamboo_buildKey=MMDB-MEDICI78-JOB1
bamboo_repository_87130141_git_username=
bamboo_capability_system_os=linux
bamboo_shortPlanName=1.5.2-fixes
bamboo_planRepository_2_username=
bamboo_planRepository_name=medici-gwt-web
bamboo_repository_87130141_branch_name=1.5.2-fixes
bamboo_buildNumber=136
bamboo_capability_system_builder_nodejs_Node_js_v6_9_1=/home/bamboo/node-v6.9.1
bamboo_capability_system_builder_nodejs_Node_js_v0_10_28=/home/bamboo/node-v0.10.28
bamboo_repository_87130141_git_branch=1.5.2-fixes
bamboo_shortJobName=default
bamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/MMDB-MEDICI78-JOB1-136
bamboo_repository_87130141_name=medici-gwt-web
bamboo_repository_18841602_git_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/cbi/cet.git
bamboo_planRepository_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git
bamboo_repository_18841602_git_username=
bamboo_agentId=140673027
bamboo_planName=MMDB - Medici 1 GWT - 1.5.2-fixes
bamboo_repository_18841602_branch_name=master
bamboo_shortPlanKey=MEDICI78
bamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt
bamboo_repository_87130141_git_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git
bamboo_shortJobKey=JOB1
bamboo_planRepository_2_name=cet
bamboo_planRepository_revision=9fdee89c42e3f9bebf2fe408f52d58fdc8ed3632
bamboo_repository_previous_revision_number=ca6248999299d57bf45c914612e428e5b2236e39
bamboo_buildTimeStamp=2017-03-13T14:42:25.156-05:00
bamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm
bamboo_planRepository_previousRevision=ca6248999299d57bf45c914612e428e5b2236e39
bamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1
bamboo_buildResultKey=MMDB-MEDICI78-JOB1-136
bamboo_repository_git_branch=1.5.2-fixes
bamboo_repository_branch_name=1.5.2-fixes
bamboo_buildPlanName=MMDB - Medici 1 GWT - 1.5.2-fixes - default
bamboo_repository_18841602_name=cet
bamboo_planRepository_1_revision=9fdee89c42e3f9bebf2fe408f52d58fdc8ed3632
bamboo_repository_18841602_revision_number=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e
bamboo_capability_system_builder_command_python3=/usr/bin/python3
bamboo_repository_name=cet
JAVA_HOME=/home/bamboo/jdk1.7.0_60
bamboo_planRepository_2_previousRevision=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e
bamboo_capability_system_docker_executable=/usr/bin/docker
bamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt
ANT_HOME=/home/bamboo/apache-ant-1.9.4
bamboo_planRepository_branch=1.5.2-fixes
bamboo_repository_18841602_previous_revision_number=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e
bamboo_repository_87130141_revision_number=9fdee89c42e3f9bebf2fe408f52d58fdc8ed3632
bamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir
bamboo_planRepository_2_revision=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e
bamboo_capability_system_git_executable=/usr/bin/git
bamboo_planRepository_1_previousRevision=ca6248999299d57bf45c914612e428e5b2236e39
bamboo_repository_git_username=
bamboo_capability_system_builder_sbt_SBT_0_13_13=/home/bamboo/sbt-0.13.13
bamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs
bamboo_planRepository_1_type=git
bamboo_planRepository_branchName=1.5.2-fixes
bamboo_capability_system_builder_command_python2_7=/usr/bin/python2.7
bamboo_capability_system_hostname=buildserver-1
bamboo_planRepository_2_type=git
bamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.8.0_66
bamboo_capability_system_software_mongo=/usr/bin/mongo
bamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl
bamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs
bamboo_planRepository_2_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/cbi/cet.git
bamboo_planRepository_type=git
bamboo_planRepository_1_username=
bamboo_capability_system_jdk_JDK_1_8_0_66=/home/bamboo/jdk1.8.0_66
bamboo_repository_git_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git
bamboo_planRepository_2_branchName=master
bamboo_repository_87130141_previous_revision_number=ca6248999299d57bf45c914612e428e5b2236e39
bamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node
bamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4
bamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.3.9
bamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1
bamboo_planKey=MMDB-MEDICI78
bamboo_repository_18841602_git_branch=master
bamboo_planRepository_1_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git
bamboo_planRepository_username=
bamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_66
bamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41
bamboo_capability_system_builder_command_mkcrx=/home/bamboo/mkcrx/mkcrx.sh
bamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60
bamboo_planRepository_1_branchName=1.5.2-fixes
PATH=/home/bamboo/jdk1.7.0_60/bin:/home/bamboo/jdk1.8.0_66/bin:/home/bamboo/node-v0.10.28/bin:/usr/bin:/bin
13-Mar-2017 14:42:35 Buildfile: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/build.xml
13-Mar-2017 14:42:35
13-Mar-2017 14:42:35 cetbean:
13-Mar-2017 14:42:35     [mkdir] Created dir: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/beanclass
13-Mar-2017 14:42:35     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/build.xml:85: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds
13-Mar-2017 14:42:35     [javac] Compiling 65 source files to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/beanclass
13-Mar-2017 14:42:36     [javac] warning: [options] bootstrap class path not set in conjunction with -source 1.5
13-Mar-2017 14:42:36     [javac] 1 warning
13-Mar-2017 14:42:36       [jar] Building jar: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/WEB-INF/lib/cet-bean.jar
13-Mar-2017 14:42:36    [delete] Deleting directory /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/beanclass
13-Mar-2017 14:42:36     [mkdir] Created dir: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/beanclass
13-Mar-2017 14:42:36     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/build.xml:100: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds
13-Mar-2017 14:42:36     [javac] Compiling 97 source files to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/beanclass
13-Mar-2017 14:42:37     [javac] warning: [options] bootstrap class path not set in conjunction with -source 1.5
13-Mar-2017 14:42:37     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/SHAPasswordDigest.java:48: warning: BASE64Encoder is internal proprietary API and may be removed in a future release
13-Mar-2017 14:42:37     [javac] import sun.misc.BASE64Encoder;
13-Mar-2017 14:42:37     [javac]                ^
13-Mar-2017 14:42:38     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/TagEventBeanUtil.java:72: warning: [deprecation] encode(String) in URLEncoder has been deprecated
13-Mar-2017 14:42:38     [javac]         return Resource.uriRef("tag:cet.ncsa.uiuc.edu,2008:/tag#" + URLEncoder.encode(tag)); //$NON-NLS-1$
13-Mar-2017 14:42:38     [javac]                                                                               ^
13-Mar-2017 14:42:38     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/VisualizationBeanUtil.java:73: warning: [deprecation] clone(T,PersonBean) in TupeloBeanUtil has been deprecated
13-Mar-2017 14:42:38     [javac]     public VisualizationBean clone(VisualizationBean bean, PersonBean creator)
13-Mar-2017 14:42:38     [javac]                              ^
13-Mar-2017 14:42:38     [javac]   where T is a type-variable:
13-Mar-2017 14:42:38     [javac]     T extends CETBean declared in class TupeloBeanUtil
13-Mar-2017 14:42:38     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/VisualizationBeanUtil.java:83: warning: [deprecation] clone(ConfigurationBean,PersonBean) in ConfigurationBeanUtil has been deprecated
13-Mar-2017 14:42:38     [javac]             ConfigurationBean configuration = cbu.clone(bean.getConfiguration(), creator);
13-Mar-2017 14:42:38     [javac]                                                  ^
13-Mar-2017 14:42:38     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/RBAC.java:442: warning: [deprecation] ADMIN_ROLE in MMDB has been deprecated
13-Mar-2017 14:42:38     [javac]             if (!t.getObject().equals(MMDB.ADMIN_ROLE) && !t.getObject().equals(MMDB.REGULAR_MEMBER_ROLE)) {
13-Mar-2017 14:42:38     [javac]                                           ^
13-Mar-2017 14:42:38     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/RBAC.java:442: warning: [deprecation] REGULAR_MEMBER_ROLE in MMDB has been deprecated
13-Mar-2017 14:42:38     [javac]             if (!t.getObject().equals(MMDB.ADMIN_ROLE) && !t.getObject().equals(MMDB.REGULAR_MEMBER_ROLE)) {
13-Mar-2017 14:42:38     [javac]                                                                                     ^
13-Mar-2017 14:42:38     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/RBAC.java:452: warning: [deprecation] ADMIN_ROLE in MMDB has been deprecated
13-Mar-2017 14:42:38     [javac]         createRole(MMDB.ADMIN_ROLE, "Administrator");
13-Mar-2017 14:42:38     [javac]                        ^
13-Mar-2017 14:42:38     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/RBAC.java:453: warning: [deprecation] REGULAR_MEMBER_ROLE in MMDB has been deprecated
13-Mar-2017 14:42:38     [javac]         createRole(MMDB.REGULAR_MEMBER_ROLE, "Member");
13-Mar-2017 14:42:38     [javac]                        ^
13-Mar-2017 14:42:38     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/SHAPasswordDigest.java:78: warning: BASE64Encoder is internal proprietary API and may be removed in a future release
13-Mar-2017 14:42:38     [javac]         BASE64Encoder encoder = new BASE64Encoder();
13-Mar-2017 14:42:38     [javac]         ^
13-Mar-2017 14:42:38     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/SHAPasswordDigest.java:78: warning: BASE64Encoder is internal proprietary API and may be removed in a future release
13-Mar-2017 14:42:38     [javac]         BASE64Encoder encoder = new BASE64Encoder();
13-Mar-2017 14:42:38     [javac]                                     ^
13-Mar-2017 14:42:38     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/workflow/dao/WorkflowStepDAO.java:28: warning: [deprecation] Rdf in Vocabulary has been deprecated
13-Mar-2017 14:42:38     [javac]         uf.addPattern(new Pattern("data", Vocabulary.Rdf.TYPE, Cyberintegrator.PARAMETER)); //$NON-NLS-1$
13-Mar-2017 14:42:38     [javac]                                                     ^
13-Mar-2017 14:42:38     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/workflow/dao/WorkflowStepDAO.java:40: warning: [deprecation] Rdf in Vocabulary has been deprecated
13-Mar-2017 14:42:38     [javac]         uf.addPattern(new Pattern("data", Vocabulary.Rdf.TYPE, Cyberintegrator.PARAMETER)); //$NON-NLS-1$
13-Mar-2017 14:42:38     [javac]                                                     ^
13-Mar-2017 14:42:38     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/workflow/dao/WorkflowStepDAO.java:58: warning: [deprecation] Rdf in Vocabulary has been deprecated
13-Mar-2017 14:42:38     [javac]         uf.addPattern(new Pattern("input", Vocabulary.Rdf.TYPE, Cyberintegrator.DATASET)); //$NON-NLS-1$
13-Mar-2017 14:42:38     [javac]                                                      ^
13-Mar-2017 14:42:38     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/workflow/dao/WorkflowStepDAO.java:82: warning: [deprecation] Rdf in Vocabulary has been deprecated
13-Mar-2017 14:42:38     [javac]         uf.addPattern(new Pattern("output", Vocabulary.Rdf.TYPE, Cyberintegrator.DATASET)); //$NON-NLS-1$
13-Mar-2017 14:42:38     [javac]                                                       ^
13-Mar-2017 14:42:38     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/workflow/dao/WorkflowToolDataDAO.java:26: warning: [deprecation] Rdf in Vocabulary has been deprecated
13-Mar-2017 14:42:38     [javac]         uf.addPattern(new Pattern("data", Vocabulary.Rdf.TYPE, Cyberintegrator.TOOL_DATA)); //$NON-NLS-1$
13-Mar-2017 14:42:38     [javac]                                                     ^
13-Mar-2017 14:42:38     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/workflow/dao/WorkflowToolDataDAO.java:41: warning: [deprecation] Rdf in Vocabulary has been deprecated
13-Mar-2017 14:42:38     [javac]         uf.addPattern(new Pattern("data", Vocabulary.Rdf.TYPE, Cyberintegrator.TOOL_DATA)); //$NON-NLS-1$
13-Mar-2017 14:42:38     [javac]                                                     ^
13-Mar-2017 14:42:38     [javac] 17 warnings
13-Mar-2017 14:42:38       [jar] Building jar: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/WEB-INF/lib/cet-bean-tupelo.jar
13-Mar-2017 14:42:38    [delete] Deleting directory /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/beanclass
13-Mar-2017 14:42:38
13-Mar-2017 14:42:38 updateversion:
13-Mar-2017 14:42:38
13-Mar-2017 14:42:38 clean:
13-Mar-2017 14:42:38
13-Mar-2017 14:42:38 compile:
13-Mar-2017 14:42:38     [mkdir] Created dir: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/WEB-INF/classes
13-Mar-2017 14:42:38     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/build.xml:126: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds
13-Mar-2017 14:42:38     [javac] Compiling 591 source files to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/WEB-INF/classes
13-Mar-2017 14:42:43     [javac] Note: Some input files use unchecked or unsafe operations.
13-Mar-2017 14:42:43     [javac] Note: Recompile with -Xlint:unchecked for details.
13-Mar-2017 14:42:43
13-Mar-2017 14:42:43 gwtc:
13-Mar-2017 14:42:43      [java] Mar 13, 2017 2:42:43 PM java.util.prefs.FileSystemPreferences$6 run
13-Mar-2017 14:42:43      [java] WARNING: Prefs file removed in background /home/bamboo/.java/.userPrefs/com/google/gwt/dev/shell/prefs.xml
13-Mar-2017 14:42:44      [java] Compiling module edu.illinois.ncsa.mmdb.web.MMDB
13-Mar-2017 14:42:55      [java]    Validating newly compiled units
13-Mar-2017 14:42:55      [java]       Ignored 1 unit with compilation errors in first pass.
13-Mar-2017 14:42:55      [java] Compile with -strict or with -logLevel set to TRACE or DEBUG to see all errors.
13-Mar-2017 14:43:13      [java] Exception in thread "Timer-0" java.lang.NoClassDefFoundError: org/w3c/dom/ElementTraversal
13-Mar-2017 14:43:13      [java]         at java.lang.ClassLoader.defineClass1(Native Method)
13-Mar-2017 14:43:13      [java]         at java.lang.ClassLoader.defineClass(ClassLoader.java:800)
13-Mar-2017 14:43:13      [java]         at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:142)
13-Mar-2017 14:43:13      [java]         at java.net.URLClassLoader.defineClass(URLClassLoader.java:449)
13-Mar-2017 14:43:13      [java]         at java.net.URLClassLoader.access$100(URLClassLoader.java:71)
13-Mar-2017 14:43:13      [java]         at java.net.URLClassLoader$1.run(URLClassLoader.java:361)
13-Mar-2017 14:43:13      [java]         at java.net.URLClassLoader$1.run(URLClassLoader.java:355)
13-Mar-2017 14:43:13      [java]         at java.security.AccessController.doPrivileged(Native Method)
13-Mar-2017 14:43:13      [java]         at java.net.URLClassLoader.findClass(URLClassLoader.java:354)
13-Mar-2017 14:43:13      [java]         at java.lang.ClassLoader.loadClass(ClassLoader.java:425)
13-Mar-2017 14:43:13      [java]         at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:308)
13-Mar-2017 14:43:13      [java]         at java.lang.ClassLoader.loadClass(ClassLoader.java:358)
13-Mar-2017 14:43:13      [java]         at org.apache.xerces.dom.DOMImplementationImpl.createDocument(Unknown Source)
13-Mar-2017 14:43:13      [java]         at org.apache.xerces.dom.CoreDOMImplementationImpl.createDocument(Unknown Source)
13-Mar-2017 14:43:13      [java]         at java.util.prefs.XmlSupport.createPrefsDoc(XmlSupport.java:228)
13-Mar-2017 14:43:13      [java]         at java.util.prefs.XmlSupport.exportMap(XmlSupport.java:343)
13-Mar-2017 14:43:13      [java]         at java.util.prefs.FileSystemPreferences$7.run(FileSystemPreferences.java:622)
13-Mar-2017 14:43:13      [java]         at java.util.prefs.FileSystemPreferences$7.run(FileSystemPreferences.java:615)
13-Mar-2017 14:43:13      [java]         at java.security.AccessController.doPrivileged(Native Method)
13-Mar-2017 14:43:13      [java]         at java.util.prefs.FileSystemPreferences.writeBackCache(FileSystemPreferences.java:614)
13-Mar-2017 14:43:13      [java]         at java.util.prefs.FileSystemPreferences.syncSpiPrivileged(FileSystemPreferences.java:801)
13-Mar-2017 14:43:13      [java]         at java.util.prefs.FileSystemPreferences.access$2300(FileSystemPreferences.java:50)
13-Mar-2017 14:43:13      [java]         at java.util.prefs.FileSystemPreferences$12.run(FileSystemPreferences.java:771)
13-Mar-2017 14:43:13      [java]         at java.util.prefs.FileSystemPreferences$12.run(FileSystemPreferences.java:769)
13-Mar-2017 14:43:13      [java]         at java.security.AccessController.doPrivileged(Native Method)
13-Mar-2017 14:43:13      [java]         at java.util.prefs.FileSystemPreferences.syncSpi(FileSystemPreferences.java:768)
13-Mar-2017 14:43:13      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1332)
13-Mar-2017 14:43:13      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
13-Mar-2017 14:43:13      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
13-Mar-2017 14:43:13      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
13-Mar-2017 14:43:13      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
13-Mar-2017 14:43:13      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
13-Mar-2017 14:43:13      [java]         at java.util.prefs.AbstractPreferences.sync(AbstractPreferences.java:1323)
13-Mar-2017 14:43:13      [java]         at java.util.prefs.FileSystemPreferences.sync(FileSystemPreferences.java:747)
13-Mar-2017 14:43:13      [java]         at java.util.prefs.FileSystemPreferences.flush(FileSystemPreferences.java:824)
13-Mar-2017 14:43:13      [java]         at java.util.prefs.FileSystemPreferences.syncWorld(FileSystemPreferences.java:464)
13-Mar-2017 14:43:13      [java]         at java.util.prefs.FileSystemPreferences.access$1200(FileSystemPreferences.java:50)
13-Mar-2017 14:43:13      [java]         at java.util.prefs.FileSystemPreferences$3.run(FileSystemPreferences.java:432)
13-Mar-2017 14:43:13      [java]         at java.util.TimerThread.mainLoop(Timer.java:555)
13-Mar-2017 14:43:13      [java]         at java.util.TimerThread.run(Timer.java:505)
13-Mar-2017 14:43:13      [java] Caused by: java.lang.ClassNotFoundException: org.w3c.dom.ElementTraversal
13-Mar-2017 14:43:13      [java]         at java.net.URLClassLoader$1.run(URLClassLoader.java:366)
13-Mar-2017 14:43:13      [java]         at java.net.URLClassLoader$1.run(URLClassLoader.java:355)
13-Mar-2017 14:43:13      [java]         at java.security.AccessController.doPrivileged(Native Method)
13-Mar-2017 14:43:13      [java]         at java.net.URLClassLoader.findClass(URLClassLoader.java:354)
13-Mar-2017 14:43:13      [java]         at java.lang.ClassLoader.loadClass(ClassLoader.java:425)
13-Mar-2017 14:43:13      [java]         at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:308)
13-Mar-2017 14:43:13      [java]         at java.lang.ClassLoader.loadClass(ClassLoader.java:358)
13-Mar-2017 14:43:13      [java]         ... 40 more
13-Mar-2017 14:43:15      [java]    Compiling 6 permutations
13-Mar-2017 14:43:15      [java]       Compiling permutation 0...
13-Mar-2017 14:43:22      [java]       Compiling permutation 1...
13-Mar-2017 14:43:28      [java]       Compiling permutation 2...
13-Mar-2017 14:43:34      [java]       Compiling permutation 3...
13-Mar-2017 14:43:38      [java]       Compiling permutation 4...
13-Mar-2017 14:43:43      [java]       Compiling permutation 5...
13-Mar-2017 14:43:48      [java]    Compile of permutations succeeded
13-Mar-2017 14:43:49      [java] Linking into /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/mmdb
13-Mar-2017 14:43:49      [java]    Link succeeded
13-Mar-2017 14:43:49      [java]    Compilation succeeded -- 65.018s
13-Mar-2017 14:43:49      [java] Exception in thread "Thread-1" java.lang.NoClassDefFoundError: org/w3c/dom/ElementTraversal
13-Mar-2017 14:43:49      [java]         at java.lang.ClassLoader.defineClass1(Native Method)
13-Mar-2017 14:43:49      [java]         at java.lang.ClassLoader.defineClass(ClassLoader.java:800)
13-Mar-2017 14:43:49      [java]         at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:142)
13-Mar-2017 14:43:49      [java]         at java.net.URLClassLoader.defineClass(URLClassLoader.java:449)
13-Mar-2017 14:43:49      [java]         at java.net.URLClassLoader.access$100(URLClassLoader.java:71)
13-Mar-2017 14:43:49      [java]         at java.net.URLClassLoader$1.run(URLClassLoader.java:361)
13-Mar-2017 14:43:49      [java]         at java.net.URLClassLoader$1.run(URLClassLoader.java:355)
13-Mar-2017 14:43:49      [java]         at java.security.AccessController.doPrivileged(Native Method)
13-Mar-2017 14:43:49      [java]         at java.net.URLClassLoader.findClass(URLClassLoader.java:354)
13-Mar-2017 14:43:49      [java]         at java.lang.ClassLoader.loadClass(ClassLoader.java:425)
13-Mar-2017 14:43:49      [java]         at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:308)
13-Mar-2017 14:43:49      [java]         at java.lang.ClassLoader.loadClass(ClassLoader.java:358)
13-Mar-2017 14:43:49      [java]         at org.apache.xerces.dom.DOMImplementationImpl.createDocument(Unknown Source)
13-Mar-2017 14:43:49      [java]         at org.apache.xerces.dom.CoreDOMImplementationImpl.createDocument(Unknown Source)
13-Mar-2017 14:43:49      [java]         at java.util.prefs.XmlSupport.createPrefsDoc(XmlSupport.java:228)
13-Mar-2017 14:43:49      [java]         at java.util.prefs.XmlSupport.exportMap(XmlSupport.java:343)
13-Mar-2017 14:43:49      [java]         at java.util.prefs.FileSystemPreferences$7.run(FileSystemPreferences.java:622)
13-Mar-2017 14:43:49      [java]         at java.util.prefs.FileSystemPreferences$7.run(FileSystemPreferences.java:615)
13-Mar-2017 14:43:49      [java]         at java.security.AccessController.doPrivileged(Native Method)
13-Mar-2017 14:43:49      [java]         at java.util.prefs.FileSystemPreferences.writeBackCache(FileSystemPreferences.java:614)
13-Mar-2017 14:43:49      [java]         at java.util.prefs.FileSystemPreferences.syncSpiPrivileged(FileSystemPreferences.java:801)
13-Mar-2017 14:43:49      [java]         at java.util.prefs.FileSystemPreferences.access$2300(FileSystemPreferences.java:50)
13-Mar-2017 14:43:49      [java]         at java.util.prefs.FileSystemPreferences$12.run(FileSystemPreferences.java:771)
13-Mar-2017 14:43:49      [java]         at java.util.prefs.FileSystemPreferences$12.run(FileSystemPreferences.java:769)
13-Mar-2017 14:43:49      [java]         at java.security.AccessController.doPrivileged(Native Method)
13-Mar-2017 14:43:49      [java]         at java.util.prefs.FileSystemPreferences.syncSpi(FileSystemPreferences.java:768)
13-Mar-2017 14:43:49      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1332)
13-Mar-2017 14:43:49      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
13-Mar-2017 14:43:49      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
13-Mar-2017 14:43:49      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
13-Mar-2017 14:43:49      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
13-Mar-2017 14:43:49      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
13-Mar-2017 14:43:49      [java]         at java.util.prefs.AbstractPreferences.sync(AbstractPreferences.java:1323)
13-Mar-2017 14:43:49      [java]         at java.util.prefs.FileSystemPreferences.sync(FileSystemPreferences.java:747)
13-Mar-2017 14:43:49      [java]         at java.util.prefs.FileSystemPreferences.flush(FileSystemPreferences.java:824)
13-Mar-2017 14:43:49      [java]         at java.util.prefs.FileSystemPreferences.syncWorld(FileSystemPreferences.java:464)
13-Mar-2017 14:43:49      [java]         at java.util.prefs.FileSystemPreferences.access$1200(FileSystemPreferences.java:50)
13-Mar-2017 14:43:49      [java]         at java.util.prefs.FileSystemPreferences$4$1.run(FileSystemPreferences.java:442)
13-Mar-2017 14:43:49      [java] Caused by: java.lang.ClassNotFoundException: org.w3c.dom.ElementTraversal
13-Mar-2017 14:43:49      [java]         at java.net.URLClassLoader$1.run(URLClassLoader.java:366)
13-Mar-2017 14:43:49      [java]         at java.net.URLClassLoader$1.run(URLClassLoader.java:355)
13-Mar-2017 14:43:49      [java]         at java.security.AccessController.doPrivileged(Native Method)
13-Mar-2017 14:43:49      [java]         at java.net.URLClassLoader.findClass(URLClassLoader.java:354)
13-Mar-2017 14:43:49      [java]         at java.lang.ClassLoader.loadClass(ClassLoader.java:425)
13-Mar-2017 14:43:49      [java]         at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:308)
13-Mar-2017 14:43:49      [java]         at java.lang.ClassLoader.loadClass(ClassLoader.java:358)
13-Mar-2017 14:43:49      [java]         ... 38 more
13-Mar-2017 14:43:49      [java] Mar 13, 2017 2:43:49 PM java.util.prefs.FileSystemPreferences$6 run
13-Mar-2017 14:43:49      [java] WARNING: Prefs file removed in background /home/bamboo/.java/.userPrefs/com/google/gwt/dev/shell/prefs.xml
13-Mar-2017 14:43:49      [java] Compiling module edu.illinois.ncsa.mmdb.web.Embed
13-Mar-2017 14:43:51      [java]    Validating newly compiled units
13-Mar-2017 14:43:51      [java]       Ignored 1 unit with compilation errors in first pass.
13-Mar-2017 14:43:51      [java] Compile with -strict or with -logLevel set to TRACE or DEBUG to see all errors.
13-Mar-2017 14:44:10      [java]    Compiling 6 permutations
13-Mar-2017 14:44:10      [java]       Compiling permutation 0...
13-Mar-2017 14:44:13      [java]       Compiling permutation 1...
13-Mar-2017 14:44:16      [java]       Compiling permutation 2...
13-Mar-2017 14:44:19      [java]       Compiling permutation 3...
13-Mar-2017 14:44:19      [java] Exception in thread "Timer-0" java.lang.NoClassDefFoundError: org/w3c/dom/ElementTraversal
13-Mar-2017 14:44:19      [java]         at java.lang.ClassLoader.defineClass1(Native Method)
13-Mar-2017 14:44:19      [java]         at java.lang.ClassLoader.defineClass(ClassLoader.java:800)
13-Mar-2017 14:44:19      [java]         at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:142)
13-Mar-2017 14:44:19      [java]         at java.net.URLClassLoader.defineClass(URLClassLoader.java:449)
13-Mar-2017 14:44:19      [java]         at java.net.URLClassLoader.access$100(URLClassLoader.java:71)
13-Mar-2017 14:44:19      [java]         at java.net.URLClassLoader$1.run(URLClassLoader.java:361)
13-Mar-2017 14:44:19      [java]         at java.net.URLClassLoader$1.run(URLClassLoader.java:355)
13-Mar-2017 14:44:19      [java]         at java.security.AccessController.doPrivileged(Native Method)
13-Mar-2017 14:44:19      [java]         at java.net.URLClassLoader.findClass(URLClassLoader.java:354)
13-Mar-2017 14:44:19      [java]         at java.lang.ClassLoader.loadClass(ClassLoader.java:425)
13-Mar-2017 14:44:19      [java]         at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:308)
13-Mar-2017 14:44:19      [java]         at java.lang.ClassLoader.loadClass(ClassLoader.java:358)
13-Mar-2017 14:44:19      [java]         at org.apache.xerces.dom.DOMImplementationImpl.createDocument(Unknown Source)
13-Mar-2017 14:44:19      [java]         at org.apache.xerces.dom.CoreDOMImplementationImpl.createDocument(Unknown Source)
13-Mar-2017 14:44:19      [java]         at java.util.prefs.XmlSupport.createPrefsDoc(XmlSupport.java:228)
13-Mar-2017 14:44:19      [java]         at java.util.prefs.XmlSupport.exportMap(XmlSupport.java:343)
13-Mar-2017 14:44:19      [java]         at java.util.prefs.FileSystemPreferences$7.run(FileSystemPreferences.java:622)
13-Mar-2017 14:44:19      [java]         at java.util.prefs.FileSystemPreferences$7.run(FileSystemPreferences.java:615)
13-Mar-2017 14:44:19      [java]         at java.security.AccessController.doPrivileged(Native Method)
13-Mar-2017 14:44:19      [java]         at java.util.prefs.FileSystemPreferences.writeBackCache(FileSystemPreferences.java:614)
13-Mar-2017 14:44:19      [java]         at java.util.prefs.FileSystemPreferences.syncSpiPrivileged(FileSystemPreferences.java:801)
13-Mar-2017 14:44:19      [java]         at java.util.prefs.FileSystemPreferences.access$2300(FileSystemPreferences.java:50)
13-Mar-2017 14:44:19      [java]         at java.util.prefs.FileSystemPreferences$12.run(FileSystemPreferences.java:771)
13-Mar-2017 14:44:19      [java]         at java.util.prefs.FileSystemPreferences$12.run(FileSystemPreferences.java:769)
13-Mar-2017 14:44:19      [java]         at java.security.AccessController.doPrivileged(Native Method)
13-Mar-2017 14:44:19      [java]         at java.util.prefs.FileSystemPreferences.syncSpi(FileSystemPreferences.java:768)
13-Mar-2017 14:44:19      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1332)
13-Mar-2017 14:44:19      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
13-Mar-2017 14:44:19      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
13-Mar-2017 14:44:19      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
13-Mar-2017 14:44:19      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
13-Mar-2017 14:44:19      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
13-Mar-2017 14:44:19      [java]         at java.util.prefs.AbstractPreferences.sync(AbstractPreferences.java:1323)
13-Mar-2017 14:44:19      [java]         at java.util.prefs.FileSystemPreferences.sync(FileSystemPreferences.java:747)
13-Mar-2017 14:44:19      [java]         at java.util.prefs.FileSystemPreferences.flush(FileSystemPreferences.java:824)
13-Mar-2017 14:44:19      [java]         at java.util.prefs.FileSystemPreferences.syncWorld(FileSystemPreferences.java:464)
13-Mar-2017 14:44:19      [java]         at java.util.prefs.FileSystemPreferences.access$1200(FileSystemPreferences.java:50)
13-Mar-2017 14:44:19      [java]         at java.util.prefs.FileSystemPreferences$3.run(FileSystemPreferences.java:432)
13-Mar-2017 14:44:19      [java]         at java.util.TimerThread.mainLoop(Timer.java:555)
13-Mar-2017 14:44:19      [java]         at java.util.TimerThread.run(Timer.java:505)
13-Mar-2017 14:44:19      [java] Caused by: java.lang.ClassNotFoundException: org.w3c.dom.ElementTraversal
13-Mar-2017 14:44:19      [java]         at java.net.URLClassLoader$1.run(URLClassLoader.java:366)
13-Mar-2017 14:44:19      [java]         at java.net.URLClassLoader$1.run(URLClassLoader.java:355)
13-Mar-2017 14:44:19      [java]         at java.security.AccessController.doPrivileged(Native Method)
13-Mar-2017 14:44:19      [java]         at java.net.URLClassLoader.findClass(URLClassLoader.java:354)
13-Mar-2017 14:44:19      [java]         at java.lang.ClassLoader.loadClass(ClassLoader.java:425)
13-Mar-2017 14:44:19      [java]         at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:308)
13-Mar-2017 14:44:19      [java]         at java.lang.ClassLoader.loadClass(ClassLoader.java:358)
13-Mar-2017 14:44:19      [java]         ... 40 more
13-Mar-2017 14:44:21      [java]       Compiling permutation 4...
13-Mar-2017 14:44:23      [java]       Compiling permutation 5...
13-Mar-2017 14:44:26      [java]    Compile of permutations succeeded
13-Mar-2017 14:44:26      [java] Exception in thread "Thread-1" java.lang.NoClassDefFoundError: org/w3c/dom/ElementTraversal
13-Mar-2017 14:44:26      [java]         at java.lang.ClassLoader.defineClass1(Native Method)
13-Mar-2017 14:44:26      [java]         at java.lang.ClassLoader.defineClass(ClassLoader.java:800)
13-Mar-2017 14:44:26      [java]         at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:142)
13-Mar-2017 14:44:26      [java]         at java.net.URLClassLoader.defineClass(URLClassLoader.java:449)
13-Mar-2017 14:44:26      [java]         at java.net.URLClassLoader.access$100(URLClassLoader.java:71)
13-Mar-2017 14:44:26      [java]         at java.net.URLClassLoader$1.run(URLClassLoader.java:361)
13-Mar-2017 14:44:26      [java]         at java.net.URLClassLoader$1.run(URLClassLoader.java:355)
13-Mar-2017 14:44:26      [java]         at java.security.AccessController.doPrivileged(Native Method)
13-Mar-2017 14:44:26      [java]         at java.net.URLClassLoader.findClass(URLClassLoader.java:354)
13-Mar-2017 14:44:26      [java]         at java.lang.ClassLoader.loadClass(ClassLoader.java:425)
13-Mar-2017 14:44:26      [java]         at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:308)
13-Mar-2017 14:44:26      [java]         at java.lang.ClassLoader.loadClass(ClassLoader.java:358)
13-Mar-2017 14:44:26      [java]         at org.apache.xerces.dom.DOMImplementationImpl.createDocument(Unknown Source)
13-Mar-2017 14:44:26      [java]         at org.apache.xerces.dom.CoreDOMImplementationImpl.createDocument(Unknown Source)
13-Mar-2017 14:44:26      [java]         at java.util.prefs.XmlSupport.createPrefsDoc(XmlSupport.java:228)
13-Mar-2017 14:44:26      [java]         at java.util.prefs.XmlSupport.exportMap(XmlSupport.java:343)
13-Mar-2017 14:44:26      [java]         at java.util.prefs.FileSystemPreferences$7.run(FileSystemPreferences.java:622)
13-Mar-2017 14:44:26      [java]         at java.util.prefs.FileSystemPreferences$7.run(FileSystemPreferences.java:615)
13-Mar-2017 14:44:26      [java]         at java.security.AccessController.doPrivileged(Native Method)
13-Mar-2017 14:44:26      [java]         at java.util.prefs.FileSystemPreferences.writeBackCache(FileSystemPreferences.java:614)
13-Mar-2017 14:44:26      [java]         at java.util.prefs.FileSystemPreferences.syncSpiPrivileged(FileSystemPreferences.java:801)
13-Mar-2017 14:44:26      [java]         at java.util.prefs.FileSystemPreferences.access$2300(FileSystemPreferences.java:50)
13-Mar-2017 14:44:26      [java]         at java.util.prefs.FileSystemPreferences$12.run(FileSystemPreferences.java:771)
13-Mar-2017 14:44:26      [java]         at java.util.prefs.FileSystemPreferences$12.run(FileSystemPreferences.java:769)
13-Mar-2017 14:44:26      [java]         at java.security.AccessController.doPrivileged(Native Method)
13-Mar-2017 14:44:26      [java]         at java.util.prefs.FileSystemPreferences.syncSpi(FileSystemPreferences.java:768)
13-Mar-2017 14:44:26      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1332)
13-Mar-2017 14:44:26      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
13-Mar-2017 14:44:26      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
13-Mar-2017 14:44:26      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
13-Mar-2017 14:44:26      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
13-Mar-2017 14:44:26      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
13-Mar-2017 14:44:26      [java]         at java.util.prefs.AbstractPreferences.sync(AbstractPreferences.java:1323)
13-Mar-2017 14:44:26      [java]         at java.util.prefs.FileSystemPreferences.sync(FileSystemPreferences.java:747)
13-Mar-2017 14:44:26      [java]         at java.util.prefs.FileSystemPreferences.flush(FileSystemPreferences.java:824)
13-Mar-2017 14:44:26      [java]         at java.util.prefs.FileSystemPreferences.syncWorld(FileSystemPreferences.java:464)
13-Mar-2017 14:44:26      [java]         at java.util.prefs.FileSystemPreferences.access$1200(FileSystemPreferences.java:50)
13-Mar-2017 14:44:26      [java]         at java.util.prefs.FileSystemPreferences$4$1.run(FileSystemPreferences.java:442)
13-Mar-2017 14:44:26      [java] Caused by: java.lang.ClassNotFoundException: org.w3c.dom.ElementTraversal
13-Mar-2017 14:44:26      [java]         at java.net.URLClassLoader$1.run(URLClassLoader.java:366)
13-Mar-2017 14:44:26      [java]         at java.net.URLClassLoader$1.run(URLClassLoader.java:355)
13-Mar-2017 14:44:26      [java]         at java.security.AccessController.doPrivileged(Native Method)
13-Mar-2017 14:44:26      [java]         at java.net.URLClassLoader.findClass(URLClassLoader.java:354)
13-Mar-2017 14:44:26      [java]         at java.lang.ClassLoader.loadClass(ClassLoader.java:425)
13-Mar-2017 14:44:26      [java]         at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:308)
13-Mar-2017 14:44:26      [java]         at java.lang.ClassLoader.loadClass(ClassLoader.java:358)
13-Mar-2017 14:44:26      [java]         ... 38 more
13-Mar-2017 14:44:26      [java] Linking into /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/embed
13-Mar-2017 14:44:26      [java]    Link succeeded
13-Mar-2017 14:44:26      [java]    Compilation succeeded -- 36.756s
13-Mar-2017 14:44:26
13-Mar-2017 14:44:26 resources:
13-Mar-2017 14:44:26      [copy] Copying 6 files to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/WEB-INF/classes
13-Mar-2017 14:44:26      [copy] Copying 1 file to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/WEB-INF/classes
13-Mar-2017 14:44:26
13-Mar-2017 14:44:26 war:
13-Mar-2017 14:44:26       [zip] Building zip: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/medici.war
13-Mar-2017 14:44:29
13-Mar-2017 14:44:29 bamboo:
13-Mar-2017 14:44:29
13-Mar-2017 14:44:29 BUILD SUCCESSFUL
13-Mar-2017 14:44:29 Total time: 1 minute 53 seconds
13-Mar-2017 14:44:29 Finished task 'Web App' with result: Success
13-Mar-2017 14:44:29 Running post build plugin 'Docker Container Cleanup'
13-Mar-2017 14:44:29 Running post build plugin 'NCover Results Collector'
13-Mar-2017 14:44:29 Running post build plugin 'Clover Results Collector'
13-Mar-2017 14:44:29 Running post build plugin 'npm Cache Cleanup'
13-Mar-2017 14:44:29 Running post build plugin 'Artifact Copier'
13-Mar-2017 14:44:29 Publishing an artifact: medici.war
13-Mar-2017 14:44:32 Finished publishing of artifact Job artifact: [medici.war], pattern: [medici.war] anchored at: [mmdb-gwt/edu.illinois.ncsa.mmdb.web] in 2.817 s
13-Mar-2017 14:44:32 Finalising the build...
13-Mar-2017 14:44:32 Stopping timer.
13-Mar-2017 14:44:32 Build MMDB-MEDICI78-JOB1-136 completed.
13-Mar-2017 14:44:32 Running on server: post build plugin 'NCover Results Collector'
13-Mar-2017 14:44:32 Running on server: post build plugin 'Build Hanging Detection Configuration'
13-Mar-2017 14:44:32 Running on server: post build plugin 'Clover Delta Calculator'
13-Mar-2017 14:44:32 Running on server: post build plugin 'Maven Dependencies Postprocessor'
13-Mar-2017 14:44:32 All post build plugins have finished
13-Mar-2017 14:44:32 Generating build results summary...
13-Mar-2017 14:44:32 Saving build results to disk...
13-Mar-2017 14:44:32 Logging substituted variables...
13-Mar-2017 14:44:32 Indexing build results...
13-Mar-2017 14:44:32 Finished building MMDB-MEDICI78-JOB1-136.