Build #137

Plan branch:

Build: #137 was successful

Job: default was successful

Stages & jobs

  1. Default Stage

Build log

The build generated 405 lines of output. Download or view full build log.

15-Mar-2017 13:32:09 Build MMDB - Medici 1 GWT - 1.5.2-fixes - default #137 (MMDB-MEDICI78-JOB1-137) started building on agent buildserver-1.os.ncsa.edu
15-Mar-2017 13:32:09 Remote agent on host buildserver-1.os.ncsa.edu
15-Mar-2017 13:32:09 Build working directory is /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1
15-Mar-2017 13:32:09 Executing build MMDB - Medici 1 GWT - 1.5.2-fixes - default #137 (MMDB-MEDICI78-JOB1-137)
15-Mar-2017 13:32:09 Starting task 'Source Code Checkout' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout'
15-Mar-2017 13:32:09 Build always requires a clean checkout
15-Mar-2017 13:32:09 Cleaning build directory '/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt'
15-Mar-2017 13:32:09 Build always requires a clean checkout
15-Mar-2017 13:32:09 Cleaning build directory '/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet'
15-Mar-2017 13:32:09 Updating source code to revision: f7e6edd563460815bdbd93b7ce0f449b4c0370ba
15-Mar-2017 13:32:09 Creating local git repository in '/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/.git'.
15-Mar-2017 13:32:09 Initialized empty Git repository in /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/.git/
15-Mar-2017 13:32:09 Fetching 'refs/heads/1.5.2-fixes' from 'https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git'. Will try to do a shallow fetch.
15-Mar-2017 13:32:13 From https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web
15-Mar-2017 13:32:13 * [new branch]      1.5.2-fixes -> 1.5.2-fixes
15-Mar-2017 13:32:13 Checking out revision f7e6edd563460815bdbd93b7ce0f449b4c0370ba.
15-Mar-2017 13:32:13 fatal: reference is not a tree: f7e6edd563460815bdbd93b7ce0f449b4c0370ba
15-Mar-2017 13:32:13 Checkout to revision f7e6edd563460815bdbd93b7ce0f449b4c0370ba has failed.
15-Mar-2017 13:32:14 Warning: failed to checkout source code to directory '/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt', trying to recover...
15-Mar-2017 13:32:14 Cleaned source directory '/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt'...
15-Mar-2017 13:32:14 Creating local git repository in '/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/.git'.
15-Mar-2017 13:32:14 Initialized empty Git repository in /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/.git/
15-Mar-2017 13:32:14 Fetching 'refs/heads/1.5.2-fixes' from 'https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git'.
15-Mar-2017 13:32:33 From https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web
15-Mar-2017 13:32:33 * [new branch]      1.5.2-fixes -> 1.5.2-fixes
15-Mar-2017 13:32:33 * [new tag]         SEAD-1.0.2 -> SEAD-1.0.2
15-Mar-2017 13:32:33 * [new tag]         mmdb-0.2.0 -> mmdb-0.2.0
15-Mar-2017 13:32:33 * [new tag]         mmdb-0.3.0 -> mmdb-0.3.0
15-Mar-2017 13:32:33 * [new tag]         mmdb-0.4.0 -> mmdb-0.4.0
15-Mar-2017 13:32:33 * [new tag]         mmdb-0.5.0 -> mmdb-0.5.0
15-Mar-2017 13:32:33 * [new tag]         mmdb-1.3.1 -> mmdb-1.3.1
15-Mar-2017 13:32:33 Fetching to source directory '/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt' completed, proceeding with checkout...
15-Mar-2017 13:32:33 Checking out revision f7e6edd563460815bdbd93b7ce0f449b4c0370ba.
15-Mar-2017 13:32:39 Note: checking out 'f7e6edd563460815bdbd93b7ce0f449b4c0370ba'.
15-Mar-2017 13:32:39
15-Mar-2017 13:32:39 You are in 'detached HEAD' state. You can look around, make experimental
15-Mar-2017 13:32:39 changes and commit them, and you can discard any commits you make in this
15-Mar-2017 13:32:39 state without impacting any branches by performing another checkout.
15-Mar-2017 13:32:39
15-Mar-2017 13:32:39 If you want to create a new branch to retain commits you create, you may
15-Mar-2017 13:32:39 do so (now or later) by using -b with the checkout command again. Example:
15-Mar-2017 13:32:39
15-Mar-2017 13:32:39   git checkout -b <new-branch-name>
15-Mar-2017 13:32:39
15-Mar-2017 13:32:39 HEAD is now at f7e6edd... Change so revoke will still delete a map from memory
15-Mar-2017 13:32:40 Checkout completed, recover successful.
15-Mar-2017 13:32:40 Updated source code to revision: f7e6edd563460815bdbd93b7ce0f449b4c0370ba
15-Mar-2017 13:32:40 Updating source code to revision: 0b0c4e05e8f4518f20b5ff7ffd272304deeab48e
15-Mar-2017 13:32:40 Creating local git repository in '/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/.git'.
15-Mar-2017 13:32:40 Initialized empty Git repository in /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/.git/
15-Mar-2017 13:32:40 Fetching 'refs/heads/master' from 'https://opensource.ncsa.illinois.edu/stash/scm/cbi/cet.git'. Will try to do a shallow fetch.
15-Mar-2017 13:32:46 From https://opensource.ncsa.illinois.edu/stash/scm/cbi/cet
15-Mar-2017 13:32:46 * [new branch]      master     -> master
15-Mar-2017 13:32:46 Checking out revision 0b0c4e05e8f4518f20b5ff7ffd272304deeab48e.
15-Mar-2017 13:32:53 Already on 'master'
15-Mar-2017 13:32:53 Updated source code to revision: 0b0c4e05e8f4518f20b5ff7ffd272304deeab48e
15-Mar-2017 13:32:53 Finished task 'Source Code Checkout' with result: Success
15-Mar-2017 13:32:53 Running pre-build action: VCS Version Collector
15-Mar-2017 13:32:53
Substituting variable: ${bamboo.repository.branch.name} with 1.5.2-fixes
15-Mar-2017 13:32:53
Substituting variable: ${bamboo.buildNumber} with 137
15-Mar-2017 13:32:55 Starting task 'Web App' of type 'com.atlassian.bamboo.plugins.ant:task.builder.ant'
15-Mar-2017 13:32:58
Beginning to execute external process for build 'MMDB - Medici 1 GWT - 1.5.2-fixes - default #137 (MMDB-MEDICI78-JOB1-137)'
... running command line:
/home/bamboo/apache-ant-1.9.4/bin/ant -Djava.io.tmpdir=/tmp/MMDB-MEDICI78-JOB1 bamboo -Dbamboo.version="1.5.2-fixes#137"
... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web
... using extra environment variables:
bamboo_planRepository_1_branch=1.5.2-fixes
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bamboo_repository_revision_number=f7e6edd563460815bdbd93b7ce0f449b4c0370ba
bamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/MMDB-MEDICI78-JOB1-137
bamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build
bamboo_planRepository_1_name=medici-gwt-web
bamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1
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bamboo_repository_87130141_git_branch=1.5.2-fixes
bamboo_shortJobName=default
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bamboo_repository_87130141_git_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git
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bamboo_planRepository_2_name=cet
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bamboo_buildTimeStamp=2017-03-14T08:47:10.706-05:00
bamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm
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bamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1
bamboo_buildResultKey=MMDB-MEDICI78-JOB1-137
bamboo_repository_git_branch=1.5.2-fixes
bamboo_repository_branch_name=1.5.2-fixes
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bamboo_repository_18841602_name=cet
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bamboo_repository_18841602_revision_number=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e
bamboo_capability_system_builder_command_python3=/usr/bin/python3
bamboo_repository_name=cet
JAVA_HOME=/home/bamboo/jdk1.7.0_60
bamboo_planRepository_2_previousRevision=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e
bamboo_capability_system_docker_executable=/usr/bin/docker
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ANT_HOME=/home/bamboo/apache-ant-1.9.4
bamboo_planRepository_branch=1.5.2-fixes
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bamboo_repository_87130141_revision_number=f7e6edd563460815bdbd93b7ce0f449b4c0370ba
bamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir
bamboo_planRepository_2_revision=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e
bamboo_capability_system_git_executable=/usr/bin/git
bamboo_planRepository_1_previousRevision=9fdee89c42e3f9bebf2fe408f52d58fdc8ed3632
bamboo_repository_git_username=
bamboo_capability_system_builder_sbt_SBT_0_13_13=/home/bamboo/sbt-0.13.13
bamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs
bamboo_planRepository_1_type=git
bamboo_planRepository_branchName=1.5.2-fixes
bamboo_capability_system_builder_command_python2_7=/usr/bin/python2.7
bamboo_capability_system_hostname=buildserver-1
bamboo_planRepository_2_type=git
bamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.8.0_66
bamboo_capability_system_software_mongo=/usr/bin/mongo
bamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl
bamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs
bamboo_planRepository_2_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/cbi/cet.git
bamboo_planRepository_type=git
bamboo_planRepository_1_username=
bamboo_capability_system_jdk_JDK_1_8_0_66=/home/bamboo/jdk1.8.0_66
bamboo_repository_git_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git
bamboo_planRepository_2_branchName=master
bamboo_repository_87130141_previous_revision_number=9fdee89c42e3f9bebf2fe408f52d58fdc8ed3632
bamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node
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bamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.3.9
bamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1
bamboo_planKey=MMDB-MEDICI78
bamboo_repository_18841602_git_branch=master
bamboo_planRepository_1_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git
bamboo_planRepository_username=
bamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_66
bamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41
bamboo_capability_system_builder_command_mkcrx=/home/bamboo/mkcrx/mkcrx.sh
bamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60
bamboo_planRepository_1_branchName=1.5.2-fixes
PATH=/home/bamboo/jdk1.7.0_60/bin:/home/bamboo/jdk1.8.0_66/bin:/home/bamboo/node-v0.10.28/bin:/usr/bin:/bin
15-Mar-2017 13:33:01 Buildfile: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/build.xml
15-Mar-2017 13:33:02
15-Mar-2017 13:33:02 cetbean:
15-Mar-2017 13:33:02     [mkdir] Created dir: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/beanclass
15-Mar-2017 13:33:02     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/build.xml:85: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds
15-Mar-2017 13:33:02     [javac] Compiling 65 source files to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/beanclass
15-Mar-2017 13:33:02     [javac] warning: [options] bootstrap class path not set in conjunction with -source 1.5
15-Mar-2017 13:33:04     [javac] 1 warning
15-Mar-2017 13:33:04       [jar] Building jar: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/WEB-INF/lib/cet-bean.jar
15-Mar-2017 13:33:05    [delete] Deleting directory /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/beanclass
15-Mar-2017 13:33:05     [mkdir] Created dir: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/beanclass
15-Mar-2017 13:33:05     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/build.xml:100: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds
15-Mar-2017 13:33:05     [javac] Compiling 97 source files to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/beanclass
15-Mar-2017 13:33:06     [javac] warning: [options] bootstrap class path not set in conjunction with -source 1.5
15-Mar-2017 13:33:09     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/SHAPasswordDigest.java:48: warning: BASE64Encoder is internal proprietary API and may be removed in a future release
15-Mar-2017 13:33:09     [javac] import sun.misc.BASE64Encoder;
15-Mar-2017 13:33:09     [javac]                ^
15-Mar-2017 13:33:10     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/TagEventBeanUtil.java:72: warning: [deprecation] encode(String) in URLEncoder has been deprecated
15-Mar-2017 13:33:10     [javac]         return Resource.uriRef("tag:cet.ncsa.uiuc.edu,2008:/tag#" + URLEncoder.encode(tag)); //$NON-NLS-1$
15-Mar-2017 13:33:10     [javac]                                                                               ^
15-Mar-2017 13:33:10     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/VisualizationBeanUtil.java:73: warning: [deprecation] clone(T,PersonBean) in TupeloBeanUtil has been deprecated
15-Mar-2017 13:33:10     [javac]     public VisualizationBean clone(VisualizationBean bean, PersonBean creator)
15-Mar-2017 13:33:10     [javac]                              ^
15-Mar-2017 13:33:10     [javac]   where T is a type-variable:
15-Mar-2017 13:33:10     [javac]     T extends CETBean declared in class TupeloBeanUtil
15-Mar-2017 13:33:10     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/VisualizationBeanUtil.java:83: warning: [deprecation] clone(ConfigurationBean,PersonBean) in ConfigurationBeanUtil has been deprecated
15-Mar-2017 13:33:10     [javac]             ConfigurationBean configuration = cbu.clone(bean.getConfiguration(), creator);
15-Mar-2017 13:33:10     [javac]                                                  ^
15-Mar-2017 13:33:10     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/RBAC.java:442: warning: [deprecation] ADMIN_ROLE in MMDB has been deprecated
15-Mar-2017 13:33:10     [javac]             if (!t.getObject().equals(MMDB.ADMIN_ROLE) && !t.getObject().equals(MMDB.REGULAR_MEMBER_ROLE)) {
15-Mar-2017 13:33:10     [javac]                                           ^
15-Mar-2017 13:33:10     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/RBAC.java:442: warning: [deprecation] REGULAR_MEMBER_ROLE in MMDB has been deprecated
15-Mar-2017 13:33:10     [javac]             if (!t.getObject().equals(MMDB.ADMIN_ROLE) && !t.getObject().equals(MMDB.REGULAR_MEMBER_ROLE)) {
15-Mar-2017 13:33:10     [javac]                                                                                     ^
15-Mar-2017 13:33:10     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/RBAC.java:452: warning: [deprecation] ADMIN_ROLE in MMDB has been deprecated
15-Mar-2017 13:33:10     [javac]         createRole(MMDB.ADMIN_ROLE, "Administrator");
15-Mar-2017 13:33:10     [javac]                        ^
15-Mar-2017 13:33:10     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/RBAC.java:453: warning: [deprecation] REGULAR_MEMBER_ROLE in MMDB has been deprecated
15-Mar-2017 13:33:10     [javac]         createRole(MMDB.REGULAR_MEMBER_ROLE, "Member");
15-Mar-2017 13:33:10     [javac]                        ^
15-Mar-2017 13:33:10     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/SHAPasswordDigest.java:78: warning: BASE64Encoder is internal proprietary API and may be removed in a future release
15-Mar-2017 13:33:10     [javac]         BASE64Encoder encoder = new BASE64Encoder();
15-Mar-2017 13:33:10     [javac]         ^
15-Mar-2017 13:33:10     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/SHAPasswordDigest.java:78: warning: BASE64Encoder is internal proprietary API and may be removed in a future release
15-Mar-2017 13:33:10     [javac]         BASE64Encoder encoder = new BASE64Encoder();
15-Mar-2017 13:33:10     [javac]                                     ^
15-Mar-2017 13:33:10     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/workflow/dao/WorkflowStepDAO.java:28: warning: [deprecation] Rdf in Vocabulary has been deprecated
15-Mar-2017 13:33:10     [javac]         uf.addPattern(new Pattern("data", Vocabulary.Rdf.TYPE, Cyberintegrator.PARAMETER)); //$NON-NLS-1$
15-Mar-2017 13:33:10     [javac]                                                     ^
15-Mar-2017 13:33:10     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/workflow/dao/WorkflowStepDAO.java:40: warning: [deprecation] Rdf in Vocabulary has been deprecated
15-Mar-2017 13:33:10     [javac]         uf.addPattern(new Pattern("data", Vocabulary.Rdf.TYPE, Cyberintegrator.PARAMETER)); //$NON-NLS-1$
15-Mar-2017 13:33:10     [javac]                                                     ^
15-Mar-2017 13:33:10     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/workflow/dao/WorkflowStepDAO.java:58: warning: [deprecation] Rdf in Vocabulary has been deprecated
15-Mar-2017 13:33:10     [javac]         uf.addPattern(new Pattern("input", Vocabulary.Rdf.TYPE, Cyberintegrator.DATASET)); //$NON-NLS-1$
15-Mar-2017 13:33:10     [javac]                                                      ^
15-Mar-2017 13:33:10     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/workflow/dao/WorkflowStepDAO.java:82: warning: [deprecation] Rdf in Vocabulary has been deprecated
15-Mar-2017 13:33:10     [javac]         uf.addPattern(new Pattern("output", Vocabulary.Rdf.TYPE, Cyberintegrator.DATASET)); //$NON-NLS-1$
15-Mar-2017 13:33:10     [javac]                                                       ^
15-Mar-2017 13:33:10     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/workflow/dao/WorkflowToolDataDAO.java:26: warning: [deprecation] Rdf in Vocabulary has been deprecated
15-Mar-2017 13:33:10     [javac]         uf.addPattern(new Pattern("data", Vocabulary.Rdf.TYPE, Cyberintegrator.TOOL_DATA)); //$NON-NLS-1$
15-Mar-2017 13:33:10     [javac]                                                     ^
15-Mar-2017 13:33:10     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/workflow/dao/WorkflowToolDataDAO.java:41: warning: [deprecation] Rdf in Vocabulary has been deprecated
15-Mar-2017 13:33:10     [javac]         uf.addPattern(new Pattern("data", Vocabulary.Rdf.TYPE, Cyberintegrator.TOOL_DATA)); //$NON-NLS-1$
15-Mar-2017 13:33:10     [javac]                                                     ^
15-Mar-2017 13:33:10     [javac] 17 warnings
15-Mar-2017 13:33:10       [jar] Building jar: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/WEB-INF/lib/cet-bean-tupelo.jar
15-Mar-2017 13:33:10    [delete] Deleting directory /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/beanclass
15-Mar-2017 13:33:10
15-Mar-2017 13:33:10 updateversion:
15-Mar-2017 13:33:11
15-Mar-2017 13:33:11 clean:
15-Mar-2017 13:33:11
15-Mar-2017 13:33:11 compile:
15-Mar-2017 13:33:11     [mkdir] Created dir: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/WEB-INF/classes
15-Mar-2017 13:33:11     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/build.xml:126: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds
15-Mar-2017 13:33:11     [javac] Compiling 591 source files to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/WEB-INF/classes
15-Mar-2017 13:33:15     [javac] Note: Some input files use unchecked or unsafe operations.
15-Mar-2017 13:33:15     [javac] Note: Recompile with -Xlint:unchecked for details.
15-Mar-2017 13:33:15
15-Mar-2017 13:33:15 gwtc:
15-Mar-2017 13:33:16      [java] Mar 15, 2017 1:33:16 PM java.util.prefs.FileSystemPreferences$6 run
15-Mar-2017 13:33:16      [java] WARNING: Prefs file removed in background /home/bamboo/.java/.userPrefs/com/google/gwt/dev/shell/prefs.xml
15-Mar-2017 13:33:16      [java] Compiling module edu.illinois.ncsa.mmdb.web.MMDB
15-Mar-2017 13:33:29      [java]    Validating newly compiled units
15-Mar-2017 13:33:29      [java]       Ignored 1 unit with compilation errors in first pass.
15-Mar-2017 13:33:29      [java] Compile with -strict or with -logLevel set to TRACE or DEBUG to see all errors.
15-Mar-2017 13:33:46      [java] Exception in thread "Timer-0" java.lang.NoClassDefFoundError: org/w3c/dom/ElementTraversal
15-Mar-2017 13:33:46      [java]         at java.lang.ClassLoader.defineClass1(Native Method)
15-Mar-2017 13:33:46      [java]         at java.lang.ClassLoader.defineClass(ClassLoader.java:800)
15-Mar-2017 13:33:46      [java]         at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:142)
15-Mar-2017 13:33:46      [java]         at java.net.URLClassLoader.defineClass(URLClassLoader.java:449)
15-Mar-2017 13:33:46      [java]         at java.net.URLClassLoader.access$100(URLClassLoader.java:71)
15-Mar-2017 13:33:46      [java]         at java.net.URLClassLoader$1.run(URLClassLoader.java:361)
15-Mar-2017 13:33:46      [java]         at java.net.URLClassLoader$1.run(URLClassLoader.java:355)
15-Mar-2017 13:33:46      [java]         at java.security.AccessController.doPrivileged(Native Method)
15-Mar-2017 13:33:46      [java]         at java.net.URLClassLoader.findClass(URLClassLoader.java:354)
15-Mar-2017 13:33:46      [java]         at java.lang.ClassLoader.loadClass(ClassLoader.java:425)
15-Mar-2017 13:33:46      [java]         at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:308)
15-Mar-2017 13:33:46      [java]         at java.lang.ClassLoader.loadClass(ClassLoader.java:358)
15-Mar-2017 13:33:46      [java]         at org.apache.xerces.dom.DOMImplementationImpl.createDocument(Unknown Source)
15-Mar-2017 13:33:46      [java]         at org.apache.xerces.dom.CoreDOMImplementationImpl.createDocument(Unknown Source)
15-Mar-2017 13:33:46      [java]         at java.util.prefs.XmlSupport.createPrefsDoc(XmlSupport.java:228)
15-Mar-2017 13:33:46      [java]         at java.util.prefs.XmlSupport.exportMap(XmlSupport.java:343)
15-Mar-2017 13:33:46      [java]         at java.util.prefs.FileSystemPreferences$7.run(FileSystemPreferences.java:622)
15-Mar-2017 13:33:46      [java]         at java.util.prefs.FileSystemPreferences$7.run(FileSystemPreferences.java:615)
15-Mar-2017 13:33:46      [java]         at java.security.AccessController.doPrivileged(Native Method)
15-Mar-2017 13:33:46      [java]         at java.util.prefs.FileSystemPreferences.writeBackCache(FileSystemPreferences.java:614)
15-Mar-2017 13:33:46      [java]         at java.util.prefs.FileSystemPreferences.syncSpiPrivileged(FileSystemPreferences.java:801)
15-Mar-2017 13:33:46      [java]         at java.util.prefs.FileSystemPreferences.access$2300(FileSystemPreferences.java:50)
15-Mar-2017 13:33:46      [java]         at java.util.prefs.FileSystemPreferences$12.run(FileSystemPreferences.java:771)
15-Mar-2017 13:33:46      [java]         at java.util.prefs.FileSystemPreferences$12.run(FileSystemPreferences.java:769)
15-Mar-2017 13:33:46      [java]         at java.security.AccessController.doPrivileged(Native Method)
15-Mar-2017 13:33:46      [java]         at java.util.prefs.FileSystemPreferences.syncSpi(FileSystemPreferences.java:768)
15-Mar-2017 13:33:46      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1332)
15-Mar-2017 13:33:46      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
15-Mar-2017 13:33:46      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
15-Mar-2017 13:33:46      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
15-Mar-2017 13:33:46      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
15-Mar-2017 13:33:46      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
15-Mar-2017 13:33:46      [java]         at java.util.prefs.AbstractPreferences.sync(AbstractPreferences.java:1323)
15-Mar-2017 13:33:46      [java]         at java.util.prefs.FileSystemPreferences.sync(FileSystemPreferences.java:747)
15-Mar-2017 13:33:46      [java]         at java.util.prefs.FileSystemPreferences.flush(FileSystemPreferences.java:824)
15-Mar-2017 13:33:46      [java]         at java.util.prefs.FileSystemPreferences.syncWorld(FileSystemPreferences.java:464)
15-Mar-2017 13:33:46      [java]         at java.util.prefs.FileSystemPreferences.access$1200(FileSystemPreferences.java:50)
15-Mar-2017 13:33:46      [java]         at java.util.prefs.FileSystemPreferences$3.run(FileSystemPreferences.java:432)
15-Mar-2017 13:33:46      [java]         at java.util.TimerThread.mainLoop(Timer.java:555)
15-Mar-2017 13:33:46      [java]         at java.util.TimerThread.run(Timer.java:505)
15-Mar-2017 13:33:46      [java] Caused by: java.lang.ClassNotFoundException: org.w3c.dom.ElementTraversal
15-Mar-2017 13:33:46      [java]         at java.net.URLClassLoader$1.run(URLClassLoader.java:366)
15-Mar-2017 13:33:46      [java]         at java.net.URLClassLoader$1.run(URLClassLoader.java:355)
15-Mar-2017 13:33:46      [java]         at java.security.AccessController.doPrivileged(Native Method)
15-Mar-2017 13:33:46      [java]         at java.net.URLClassLoader.findClass(URLClassLoader.java:354)
15-Mar-2017 13:33:46      [java]         at java.lang.ClassLoader.loadClass(ClassLoader.java:425)
15-Mar-2017 13:33:46      [java]         at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:308)
15-Mar-2017 13:33:46      [java]         at java.lang.ClassLoader.loadClass(ClassLoader.java:358)
15-Mar-2017 13:33:46      [java]         ... 40 more
15-Mar-2017 13:33:49      [java]    Compiling 6 permutations
15-Mar-2017 13:33:49      [java]       Compiling permutation 0...
15-Mar-2017 13:33:56      [java]       Compiling permutation 1...
15-Mar-2017 13:34:03      [java]       Compiling permutation 2...
15-Mar-2017 13:34:08      [java]       Compiling permutation 3...
15-Mar-2017 13:34:13      [java]       Compiling permutation 4...
15-Mar-2017 13:34:18      [java]       Compiling permutation 5...
15-Mar-2017 13:34:23      [java]    Compile of permutations succeeded
15-Mar-2017 13:34:24      [java] Linking into /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/mmdb
15-Mar-2017 13:34:24      [java]    Link succeeded
15-Mar-2017 13:34:24      [java]    Compilation succeeded -- 67.356s
15-Mar-2017 13:34:24      [java] Exception in thread "Thread-1" java.lang.NoClassDefFoundError: org/w3c/dom/ElementTraversal
15-Mar-2017 13:34:24      [java]         at java.lang.ClassLoader.defineClass1(Native Method)
15-Mar-2017 13:34:24      [java]         at java.lang.ClassLoader.defineClass(ClassLoader.java:800)
15-Mar-2017 13:34:24      [java]         at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:142)
15-Mar-2017 13:34:24      [java]         at java.net.URLClassLoader.defineClass(URLClassLoader.java:449)
15-Mar-2017 13:34:24      [java]         at java.net.URLClassLoader.access$100(URLClassLoader.java:71)
15-Mar-2017 13:34:24      [java]         at java.net.URLClassLoader$1.run(URLClassLoader.java:361)
15-Mar-2017 13:34:24      [java]         at java.net.URLClassLoader$1.run(URLClassLoader.java:355)
15-Mar-2017 13:34:24      [java]         at java.security.AccessController.doPrivileged(Native Method)
15-Mar-2017 13:34:24      [java]         at java.net.URLClassLoader.findClass(URLClassLoader.java:354)
15-Mar-2017 13:34:24      [java]         at java.lang.ClassLoader.loadClass(ClassLoader.java:425)
15-Mar-2017 13:34:24      [java]         at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:308)
15-Mar-2017 13:34:24      [java]         at java.lang.ClassLoader.loadClass(ClassLoader.java:358)
15-Mar-2017 13:34:24      [java]         at org.apache.xerces.dom.DOMImplementationImpl.createDocument(Unknown Source)
15-Mar-2017 13:34:24      [java]         at org.apache.xerces.dom.CoreDOMImplementationImpl.createDocument(Unknown Source)
15-Mar-2017 13:34:24      [java]         at java.util.prefs.XmlSupport.createPrefsDoc(XmlSupport.java:228)
15-Mar-2017 13:34:24      [java]         at java.util.prefs.XmlSupport.exportMap(XmlSupport.java:343)
15-Mar-2017 13:34:24      [java]         at java.util.prefs.FileSystemPreferences$7.run(FileSystemPreferences.java:622)
15-Mar-2017 13:34:24      [java]         at java.util.prefs.FileSystemPreferences$7.run(FileSystemPreferences.java:615)
15-Mar-2017 13:34:24      [java]         at java.security.AccessController.doPrivileged(Native Method)
15-Mar-2017 13:34:24      [java]         at java.util.prefs.FileSystemPreferences.writeBackCache(FileSystemPreferences.java:614)
15-Mar-2017 13:34:24      [java]         at java.util.prefs.FileSystemPreferences.syncSpiPrivileged(FileSystemPreferences.java:801)
15-Mar-2017 13:34:24      [java]         at java.util.prefs.FileSystemPreferences.access$2300(FileSystemPreferences.java:50)
15-Mar-2017 13:34:24      [java]         at java.util.prefs.FileSystemPreferences$12.run(FileSystemPreferences.java:771)
15-Mar-2017 13:34:24      [java]         at java.util.prefs.FileSystemPreferences$12.run(FileSystemPreferences.java:769)
15-Mar-2017 13:34:24      [java]         at java.security.AccessController.doPrivileged(Native Method)
15-Mar-2017 13:34:24      [java]         at java.util.prefs.FileSystemPreferences.syncSpi(FileSystemPreferences.java:768)
15-Mar-2017 13:34:24      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1332)
15-Mar-2017 13:34:24      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
15-Mar-2017 13:34:24      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
15-Mar-2017 13:34:24      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
15-Mar-2017 13:34:24      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
15-Mar-2017 13:34:24      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
15-Mar-2017 13:34:24      [java]         at java.util.prefs.AbstractPreferences.sync(AbstractPreferences.java:1323)
15-Mar-2017 13:34:24      [java]         at java.util.prefs.FileSystemPreferences.sync(FileSystemPreferences.java:747)
15-Mar-2017 13:34:24      [java]         at java.util.prefs.FileSystemPreferences.flush(FileSystemPreferences.java:824)
15-Mar-2017 13:34:24      [java]         at java.util.prefs.FileSystemPreferences.syncWorld(FileSystemPreferences.java:464)
15-Mar-2017 13:34:24      [java]         at java.util.prefs.FileSystemPreferences.access$1200(FileSystemPreferences.java:50)
15-Mar-2017 13:34:24      [java]         at java.util.prefs.FileSystemPreferences$4$1.run(FileSystemPreferences.java:442)
15-Mar-2017 13:34:24      [java] Caused by: java.lang.ClassNotFoundException: org.w3c.dom.ElementTraversal
15-Mar-2017 13:34:24      [java]         at java.net.URLClassLoader$1.run(URLClassLoader.java:366)
15-Mar-2017 13:34:24      [java]         at java.net.URLClassLoader$1.run(URLClassLoader.java:355)
15-Mar-2017 13:34:24      [java]         at java.security.AccessController.doPrivileged(Native Method)
15-Mar-2017 13:34:24      [java]         at java.net.URLClassLoader.findClass(URLClassLoader.java:354)
15-Mar-2017 13:34:24      [java]         at java.lang.ClassLoader.loadClass(ClassLoader.java:425)
15-Mar-2017 13:34:24      [java]         at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:308)
15-Mar-2017 13:34:24      [java]         at java.lang.ClassLoader.loadClass(ClassLoader.java:358)
15-Mar-2017 13:34:24      [java]         ... 38 more
15-Mar-2017 13:34:24      [java] Mar 15, 2017 1:34:24 PM java.util.prefs.FileSystemPreferences$6 run
15-Mar-2017 13:34:24      [java] WARNING: Prefs file removed in background /home/bamboo/.java/.userPrefs/com/google/gwt/dev/shell/prefs.xml
15-Mar-2017 13:34:25      [java] Compiling module edu.illinois.ncsa.mmdb.web.Embed
15-Mar-2017 13:34:26      [java]    Validating newly compiled units
15-Mar-2017 13:34:26      [java]       Ignored 1 unit with compilation errors in first pass.
15-Mar-2017 13:34:26      [java] Compile with -strict or with -logLevel set to TRACE or DEBUG to see all errors.
15-Mar-2017 13:34:43      [java]    Compiling 6 permutations
15-Mar-2017 13:34:43      [java]       Compiling permutation 0...
15-Mar-2017 13:34:47      [java]       Compiling permutation 1...
15-Mar-2017 13:34:50      [java]       Compiling permutation 2...
15-Mar-2017 13:34:52      [java]       Compiling permutation 3...
15-Mar-2017 13:34:54      [java] Exception in thread "Timer-0" java.lang.NoClassDefFoundError: org/w3c/dom/ElementTraversal
15-Mar-2017 13:34:54      [java]         at java.lang.ClassLoader.defineClass1(Native Method)
15-Mar-2017 13:34:54      [java]         at java.lang.ClassLoader.defineClass(ClassLoader.java:800)
15-Mar-2017 13:34:54      [java]         at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:142)
15-Mar-2017 13:34:54      [java]         at java.net.URLClassLoader.defineClass(URLClassLoader.java:449)
15-Mar-2017 13:34:54      [java]         at java.net.URLClassLoader.access$100(URLClassLoader.java:71)
15-Mar-2017 13:34:54      [java]         at java.net.URLClassLoader$1.run(URLClassLoader.java:361)
15-Mar-2017 13:34:54      [java]         at java.net.URLClassLoader$1.run(URLClassLoader.java:355)
15-Mar-2017 13:34:54      [java]         at java.security.AccessController.doPrivileged(Native Method)
15-Mar-2017 13:34:54      [java]         at java.net.URLClassLoader.findClass(URLClassLoader.java:354)
15-Mar-2017 13:34:54      [java]         at java.lang.ClassLoader.loadClass(ClassLoader.java:425)
15-Mar-2017 13:34:54      [java]         at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:308)
15-Mar-2017 13:34:54      [java]         at java.lang.ClassLoader.loadClass(ClassLoader.java:358)
15-Mar-2017 13:34:54      [java]         at org.apache.xerces.dom.DOMImplementationImpl.createDocument(Unknown Source)
15-Mar-2017 13:34:54      [java]         at org.apache.xerces.dom.CoreDOMImplementationImpl.createDocument(Unknown Source)
15-Mar-2017 13:34:54      [java]         at java.util.prefs.XmlSupport.createPrefsDoc(XmlSupport.java:228)
15-Mar-2017 13:34:54      [java]         at java.util.prefs.XmlSupport.exportMap(XmlSupport.java:343)
15-Mar-2017 13:34:54      [java]         at java.util.prefs.FileSystemPreferences$7.run(FileSystemPreferences.java:622)
15-Mar-2017 13:34:54      [java]         at java.util.prefs.FileSystemPreferences$7.run(FileSystemPreferences.java:615)
15-Mar-2017 13:34:54      [java]         at java.security.AccessController.doPrivileged(Native Method)
15-Mar-2017 13:34:54      [java]         at java.util.prefs.FileSystemPreferences.writeBackCache(FileSystemPreferences.java:614)
15-Mar-2017 13:34:54      [java]         at java.util.prefs.FileSystemPreferences.syncSpiPrivileged(FileSystemPreferences.java:801)
15-Mar-2017 13:34:54      [java]         at java.util.prefs.FileSystemPreferences.access$2300(FileSystemPreferences.java:50)
15-Mar-2017 13:34:54      [java]         at java.util.prefs.FileSystemPreferences$12.run(FileSystemPreferences.java:771)
15-Mar-2017 13:34:54      [java]         at java.util.prefs.FileSystemPreferences$12.run(FileSystemPreferences.java:769)
15-Mar-2017 13:34:54      [java]         at java.security.AccessController.doPrivileged(Native Method)
15-Mar-2017 13:34:54      [java]         at java.util.prefs.FileSystemPreferences.syncSpi(FileSystemPreferences.java:768)
15-Mar-2017 13:34:54      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1332)
15-Mar-2017 13:34:54      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
15-Mar-2017 13:34:54      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
15-Mar-2017 13:34:54      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
15-Mar-2017 13:34:54      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
15-Mar-2017 13:34:54      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
15-Mar-2017 13:34:54      [java]         at java.util.prefs.AbstractPreferences.sync(AbstractPreferences.java:1323)
15-Mar-2017 13:34:54      [java]         at java.util.prefs.FileSystemPreferences.sync(FileSystemPreferences.java:747)
15-Mar-2017 13:34:54      [java]         at java.util.prefs.FileSystemPreferences.flush(FileSystemPreferences.java:824)
15-Mar-2017 13:34:54      [java]         at java.util.prefs.FileSystemPreferences.syncWorld(FileSystemPreferences.java:464)
15-Mar-2017 13:34:54      [java]         at java.util.prefs.FileSystemPreferences.access$1200(FileSystemPreferences.java:50)
15-Mar-2017 13:34:54      [java]         at java.util.prefs.FileSystemPreferences$3.run(FileSystemPreferences.java:432)
15-Mar-2017 13:34:54      [java]         at java.util.TimerThread.mainLoop(Timer.java:555)
15-Mar-2017 13:34:54      [java]         at java.util.TimerThread.run(Timer.java:505)
15-Mar-2017 13:34:54      [java] Caused by: java.lang.ClassNotFoundException: org.w3c.dom.ElementTraversal
15-Mar-2017 13:34:54      [java]         at java.net.URLClassLoader$1.run(URLClassLoader.java:366)
15-Mar-2017 13:34:54      [java]         at java.net.URLClassLoader$1.run(URLClassLoader.java:355)
15-Mar-2017 13:34:54      [java]         at java.security.AccessController.doPrivileged(Native Method)
15-Mar-2017 13:34:54      [java]         at java.net.URLClassLoader.findClass(URLClassLoader.java:354)
15-Mar-2017 13:34:54      [java]         at java.lang.ClassLoader.loadClass(ClassLoader.java:425)
15-Mar-2017 13:34:54      [java]         at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:308)
15-Mar-2017 13:34:54      [java]         at java.lang.ClassLoader.loadClass(ClassLoader.java:358)
15-Mar-2017 13:34:54      [java]         ... 40 more
15-Mar-2017 13:34:55      [java]       Compiling permutation 4...
15-Mar-2017 13:34:57      [java]       Compiling permutation 5...
15-Mar-2017 13:34:59      [java]    Compile of permutations succeeded
15-Mar-2017 13:35:00      [java] Linking into /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/embed
15-Mar-2017 13:35:00      [java]    Link succeeded
15-Mar-2017 13:35:00      [java]    Compilation succeeded -- 35.007s
15-Mar-2017 13:35:00      [java] Exception in thread "Thread-1" java.lang.NoClassDefFoundError: org/w3c/dom/ElementTraversal
15-Mar-2017 13:35:00      [java]         at java.lang.ClassLoader.defineClass1(Native Method)
15-Mar-2017 13:35:00      [java]         at java.lang.ClassLoader.defineClass(ClassLoader.java:800)
15-Mar-2017 13:35:00      [java]         at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:142)
15-Mar-2017 13:35:00      [java]         at java.net.URLClassLoader.defineClass(URLClassLoader.java:449)
15-Mar-2017 13:35:00      [java]         at java.net.URLClassLoader.access$100(URLClassLoader.java:71)
15-Mar-2017 13:35:00      [java]         at java.net.URLClassLoader$1.run(URLClassLoader.java:361)
15-Mar-2017 13:35:00      [java]         at java.net.URLClassLoader$1.run(URLClassLoader.java:355)
15-Mar-2017 13:35:00      [java]         at java.security.AccessController.doPrivileged(Native Method)
15-Mar-2017 13:35:00      [java]         at java.net.URLClassLoader.findClass(URLClassLoader.java:354)
15-Mar-2017 13:35:00      [java]         at java.lang.ClassLoader.loadClass(ClassLoader.java:425)
15-Mar-2017 13:35:00      [java]         at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:308)
15-Mar-2017 13:35:00      [java]         at java.lang.ClassLoader.loadClass(ClassLoader.java:358)
15-Mar-2017 13:35:00      [java]         at org.apache.xerces.dom.DOMImplementationImpl.createDocument(Unknown Source)
15-Mar-2017 13:35:00      [java]         at org.apache.xerces.dom.CoreDOMImplementationImpl.createDocument(Unknown Source)
15-Mar-2017 13:35:00      [java]         at java.util.prefs.XmlSupport.createPrefsDoc(XmlSupport.java:228)
15-Mar-2017 13:35:00      [java]         at java.util.prefs.XmlSupport.exportMap(XmlSupport.java:343)
15-Mar-2017 13:35:00      [java]         at java.util.prefs.FileSystemPreferences$7.run(FileSystemPreferences.java:622)
15-Mar-2017 13:35:00      [java]         at java.util.prefs.FileSystemPreferences$7.run(FileSystemPreferences.java:615)
15-Mar-2017 13:35:00      [java]         at java.security.AccessController.doPrivileged(Native Method)
15-Mar-2017 13:35:00      [java]         at java.util.prefs.FileSystemPreferences.writeBackCache(FileSystemPreferences.java:614)
15-Mar-2017 13:35:00      [java]         at java.util.prefs.FileSystemPreferences.syncSpiPrivileged(FileSystemPreferences.java:801)
15-Mar-2017 13:35:00      [java]         at java.util.prefs.FileSystemPreferences.access$2300(FileSystemPreferences.java:50)
15-Mar-2017 13:35:00      [java]         at java.util.prefs.FileSystemPreferences$12.run(FileSystemPreferences.java:771)
15-Mar-2017 13:35:00      [java]         at java.util.prefs.FileSystemPreferences$12.run(FileSystemPreferences.java:769)
15-Mar-2017 13:35:00      [java]         at java.security.AccessController.doPrivileged(Native Method)
15-Mar-2017 13:35:00      [java]         at java.util.prefs.FileSystemPreferences.syncSpi(FileSystemPreferences.java:768)
15-Mar-2017 13:35:00      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1332)
15-Mar-2017 13:35:00      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
15-Mar-2017 13:35:00      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
15-Mar-2017 13:35:00      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
15-Mar-2017 13:35:00      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
15-Mar-2017 13:35:00      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
15-Mar-2017 13:35:00      [java]         at java.util.prefs.AbstractPreferences.sync(AbstractPreferences.java:1323)
15-Mar-2017 13:35:00      [java]         at java.util.prefs.FileSystemPreferences.sync(FileSystemPreferences.java:747)
15-Mar-2017 13:35:00      [java]         at java.util.prefs.FileSystemPreferences.flush(FileSystemPreferences.java:824)
15-Mar-2017 13:35:00      [java]         at java.util.prefs.FileSystemPreferences.syncWorld(FileSystemPreferences.java:464)
15-Mar-2017 13:35:00      [java]         at java.util.prefs.FileSystemPreferences.access$1200(FileSystemPreferences.java:50)
15-Mar-2017 13:35:00      [java]         at java.util.prefs.FileSystemPreferences$4$1.run(FileSystemPreferences.java:442)
15-Mar-2017 13:35:00      [java] Caused by: java.lang.ClassNotFoundException: org.w3c.dom.ElementTraversal
15-Mar-2017 13:35:00      [java]         at java.net.URLClassLoader$1.run(URLClassLoader.java:366)
15-Mar-2017 13:35:00      [java]         at java.net.URLClassLoader$1.run(URLClassLoader.java:355)
15-Mar-2017 13:35:00      [java]         at java.security.AccessController.doPrivileged(Native Method)
15-Mar-2017 13:35:00      [java]         at java.net.URLClassLoader.findClass(URLClassLoader.java:354)
15-Mar-2017 13:35:00      [java]         at java.lang.ClassLoader.loadClass(ClassLoader.java:425)
15-Mar-2017 13:35:00      [java]         at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:308)
15-Mar-2017 13:35:00      [java]         at java.lang.ClassLoader.loadClass(ClassLoader.java:358)
15-Mar-2017 13:35:00      [java]         ... 38 more
15-Mar-2017 13:35:00
15-Mar-2017 13:35:00 resources:
15-Mar-2017 13:35:00      [copy] Copying 6 files to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/WEB-INF/classes
15-Mar-2017 13:35:00      [copy] Copying 1 file to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/WEB-INF/classes
15-Mar-2017 13:35:00
15-Mar-2017 13:35:00 war:
15-Mar-2017 13:35:00       [zip] Building zip: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/medici.war
15-Mar-2017 13:35:03
15-Mar-2017 13:35:03 bamboo:
15-Mar-2017 13:35:03
15-Mar-2017 13:35:03 BUILD SUCCESSFUL
15-Mar-2017 13:35:03 Total time: 2 minutes 1 second
15-Mar-2017 13:35:03 Finished task 'Web App' with result: Success
15-Mar-2017 13:35:03 Running post build plugin 'Docker Container Cleanup'
15-Mar-2017 13:35:03 Running post build plugin 'NCover Results Collector'
15-Mar-2017 13:35:03 Running post build plugin 'Clover Results Collector'
15-Mar-2017 13:35:03 Running post build plugin 'npm Cache Cleanup'
15-Mar-2017 13:35:03 Running post build plugin 'Artifact Copier'
15-Mar-2017 13:35:03 Publishing an artifact: medici.war
15-Mar-2017 13:35:06 Finished publishing of artifact Job artifact: [medici.war], pattern: [medici.war] anchored at: [mmdb-gwt/edu.illinois.ncsa.mmdb.web] in 3.381 s
15-Mar-2017 13:35:06 Finalising the build...
15-Mar-2017 13:35:06 Stopping timer.
15-Mar-2017 13:35:06 Build MMDB-MEDICI78-JOB1-137 completed.
15-Mar-2017 13:35:07 Running on server: post build plugin 'NCover Results Collector'
15-Mar-2017 13:35:07 Running on server: post build plugin 'Build Hanging Detection Configuration'
15-Mar-2017 13:35:07 Running on server: post build plugin 'Clover Delta Calculator'
15-Mar-2017 13:35:07 Running on server: post build plugin 'Maven Dependencies Postprocessor'
15-Mar-2017 13:35:07 All post build plugins have finished
15-Mar-2017 13:35:07 Generating build results summary...
15-Mar-2017 13:35:07 Saving build results to disk...
15-Mar-2017 13:35:07 Logging substituted variables...
15-Mar-2017 13:35:07 Indexing build results...
15-Mar-2017 13:35:07 Finished building MMDB-MEDICI78-JOB1-137.