Build: #143 was successful

Job: default was successful

Stages & jobs

  1. Default Stage

Build log

The build generated 376 lines of output. Download or view full build log.

05-Apr-2017 15:57:18 Build MMDB - Medici 1 GWT - 1.5.2-fixes - default #143 (MMDB-MEDICI78-JOB1-143) started building on agent buildserver-1.os.ncsa.edu
05-Apr-2017 15:57:18 Remote agent on host buildserver-1.os.ncsa.edu
05-Apr-2017 15:57:18 Build working directory is /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1
05-Apr-2017 15:57:18 Executing build MMDB - Medici 1 GWT - 1.5.2-fixes - default #143 (MMDB-MEDICI78-JOB1-143)
05-Apr-2017 15:57:18 Starting task 'Source Code Checkout' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout'
05-Apr-2017 15:57:18 Build always requires a clean checkout
05-Apr-2017 15:57:18 Cleaning build directory '/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt'
05-Apr-2017 15:57:18 Build always requires a clean checkout
05-Apr-2017 15:57:18 Cleaning build directory '/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet'
05-Apr-2017 15:57:18 Updating source code to revision: e48d155002a47e96fa2cd04d440779b0ae0aa9f1
05-Apr-2017 15:57:18 Creating local git repository in '/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/.git'.
05-Apr-2017 15:57:18 Initialized empty Git repository in /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/.git/
05-Apr-2017 15:57:19 Fetching 'refs/heads/1.5.2-fixes' from 'https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git'. Will try to do a shallow fetch.
05-Apr-2017 15:57:23 From https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web
05-Apr-2017 15:57:23 * [new branch]      1.5.2-fixes -> 1.5.2-fixes
05-Apr-2017 15:57:23 Checking out revision e48d155002a47e96fa2cd04d440779b0ae0aa9f1.
05-Apr-2017 15:57:23 Switched to branch '1.5.2-fixes'
05-Apr-2017 15:57:23 Updated source code to revision: e48d155002a47e96fa2cd04d440779b0ae0aa9f1
05-Apr-2017 15:57:23 Updating source code to revision: 0b0c4e05e8f4518f20b5ff7ffd272304deeab48e
05-Apr-2017 15:57:23 Creating local git repository in '/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/.git'.
05-Apr-2017 15:57:23 Initialized empty Git repository in /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/.git/
05-Apr-2017 15:57:24 Fetching 'refs/heads/master' from 'https://opensource.ncsa.illinois.edu/stash/scm/cbi/cet.git'. Will try to do a shallow fetch.
05-Apr-2017 15:57:30 From https://opensource.ncsa.illinois.edu/stash/scm/cbi/cet
05-Apr-2017 15:57:30 * [new branch]      master     -> master
05-Apr-2017 15:57:30 Checking out revision 0b0c4e05e8f4518f20b5ff7ffd272304deeab48e.
05-Apr-2017 15:57:34 Already on 'master'
05-Apr-2017 15:57:34 Updated source code to revision: 0b0c4e05e8f4518f20b5ff7ffd272304deeab48e
05-Apr-2017 15:57:34 Finished task 'Source Code Checkout' with result: Success
05-Apr-2017 15:57:34 Running pre-build action: VCS Version Collector
05-Apr-2017 15:57:34
Substituting variable: ${bamboo.repository.branch.name} with 1.5.2-fixes
05-Apr-2017 15:57:34
Substituting variable: ${bamboo.buildNumber} with 143
05-Apr-2017 15:57:35 Starting task 'Web App' of type 'com.atlassian.bamboo.plugins.ant:task.builder.ant'
05-Apr-2017 15:57:35
Beginning to execute external process for build 'MMDB - Medici 1 GWT - 1.5.2-fixes - default #143 (MMDB-MEDICI78-JOB1-143)'
... running command line:
/home/bamboo/apache-ant-1.9.4/bin/ant -Djava.io.tmpdir=/tmp/MMDB-MEDICI78-JOB1 bamboo -Dbamboo.version="1.5.2-fixes#143"
... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web
... using extra environment variables:
bamboo_planRepository_1_branch=1.5.2-fixes
bamboo_capability_system_builder_command_npm_6=/home/bamboo/node-v6.9.1/bin/npm
bamboo_planRepository_2_branch=master
bamboo_planRepository_1_branchDisplayName=1.5.2-fixes
bamboo_repository_revision_number=e48d155002a47e96fa2cd04d440779b0ae0aa9f1
bamboo_buildKey=MMDB-MEDICI78-JOB1
bamboo_repository_87130141_git_username=
bamboo_repository_87130141_git_branch=1.5.2-fixes
bamboo_planRepository_2_branchDisplayName=master
bamboo_shortJobName=default
bamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/MMDB-MEDICI78-JOB1-143
bamboo_repository_87130141_name=medici-gwt-web
bamboo_planRepository_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git
bamboo_agentId=140673027
bamboo_repository_18841602_branch_name=master
bamboo_repository_87130141_git_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git
bamboo_capability_system_builder_node_Node_js_v0_10_28=/home/bamboo/node-v0.10.28/bin/node
bamboo_planRepository_revision=e48d155002a47e96fa2cd04d440779b0ae0aa9f1
bamboo_planRepository_previousRevision=3457be147591c18cb7ce6250a84fe16a2c832dd0
bamboo_repository_branch_name=1.5.2-fixes
bamboo_repository_18841602_name=cet
bamboo_capability_system_builder_command_python3=/usr/bin/python3
JAVA_HOME=/home/bamboo/jdk1.7.0_60
bamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt
ANT_HOME=/home/bamboo/apache-ant-1.9.4
bamboo_planRepository_branch=1.5.2-fixes
bamboo_repository_18841602_previous_revision_number=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e
bamboo_repository_87130141_revision_number=e48d155002a47e96fa2cd04d440779b0ae0aa9f1
bamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs
bamboo_planRepository_1_type=gitv2
bamboo_planRepository_branchName=1.5.2-fixes
bamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.8.0_66
bamboo_capability_system_software_mongo=/usr/bin/mongo
bamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl
bamboo_planRepository_type=gitv2
bamboo_planRepository_1_username=
bamboo_capability_system_jdk_JDK_1_8_0_66=/home/bamboo/jdk1.8.0_66
bamboo_planRepository_2_branchName=master
bamboo_repository_87130141_previous_revision_number=3457be147591c18cb7ce6250a84fe16a2c832dd0
bamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node
bamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4
bamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.3.9
bamboo_planKey=MMDB-MEDICI78
bamboo_repository_18841602_git_branch=master
bamboo_planRepository_username=
bamboo_planRepository_1_branchName=1.5.2-fixes
bamboo_capability_system_builder_node_Node_js_v6_9_1=/home/bamboo/node-v6.9.1/bin/node
bamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster
bamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/MMDB-MEDICI78-JOB1-143
bamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build
bamboo_planRepository_1_name=medici-gwt-web
bamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1
bamboo_capability_system_os=linux
bamboo_shortPlanName=1.5.2-fixes
bamboo_planRepository_2_username=
bamboo_planRepository_name=medici-gwt-web
bamboo_repository_87130141_branch_name=1.5.2-fixes
bamboo_buildNumber=143
bamboo_repository_18841602_git_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/cbi/cet.git
bamboo_repository_18841602_git_username=
bamboo_planName=MMDB - Medici 1 GWT - 1.5.2-fixes
bamboo_shortPlanKey=MEDICI78
bamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt
bamboo_shortJobKey=JOB1
bamboo_planRepository_2_name=cet
bamboo_repository_previous_revision_number=3457be147591c18cb7ce6250a84fe16a2c832dd0
bamboo_buildTimeStamp=2017-04-05T15:57:18.256-05:00
bamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm
bamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1
bamboo_buildResultKey=MMDB-MEDICI78-JOB1-143
bamboo_repository_git_branch=1.5.2-fixes
bamboo_buildPlanName=MMDB - Medici 1 GWT - 1.5.2-fixes - default
bamboo_planRepository_1_revision=e48d155002a47e96fa2cd04d440779b0ae0aa9f1
bamboo_repository_18841602_revision_number=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e
bamboo_repository_name=cet
bamboo_planRepository_2_previousRevision=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e
bamboo_capability_system_docker_executable=/usr/bin/docker
bamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir
bamboo_planRepository_2_revision=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e
bamboo_capability_system_git_executable=/usr/bin/git
bamboo_planRepository_1_previousRevision=3457be147591c18cb7ce6250a84fe16a2c832dd0
bamboo_repository_git_username=
bamboo_capability_system_builder_sbt_SBT_0_13_13=/home/bamboo/sbt-0.13.13
bamboo_planRepository_branchDisplayName=1.5.2-fixes
bamboo_capability_system_builder_command_python2_7=/usr/bin/python2.7
bamboo_capability_system_hostname=buildserver-1
bamboo_planRepository_2_type=gitv2
bamboo_plan_storageTag=MMDB-MEDICI78
bamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs
bamboo_planRepository_2_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/cbi/cet.git
bamboo_repository_git_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git
bamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1
bamboo_planRepository_1_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git
bamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_66
bamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41
bamboo_capability_system_builder_command_mkcrx=/home/bamboo/mkcrx/mkcrx.sh
bamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60
PATH=/home/bamboo/jdk1.7.0_60/bin:/home/bamboo/jdk1.8.0_66/bin:/home/bamboo/node-v0.10.28/bin:/usr/bin:/bin
05-Apr-2017 15:57:37 Buildfile: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/build.xml
05-Apr-2017 15:57:38
05-Apr-2017 15:57:38 cetbean:
05-Apr-2017 15:57:38     [mkdir] Created dir: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/beanclass
05-Apr-2017 15:57:38     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/build.xml:85: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds
05-Apr-2017 15:57:38     [javac] Compiling 65 source files to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/beanclass
05-Apr-2017 15:57:38     [javac] warning: [options] bootstrap class path not set in conjunction with -source 1.5
05-Apr-2017 15:57:40     [javac] 1 warning
05-Apr-2017 15:57:40       [jar] Building jar: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/WEB-INF/lib/cet-bean.jar
05-Apr-2017 15:57:40    [delete] Deleting directory /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/beanclass
05-Apr-2017 15:57:40     [mkdir] Created dir: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/beanclass
05-Apr-2017 15:57:40     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/build.xml:100: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds
05-Apr-2017 15:57:40     [javac] Compiling 97 source files to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/beanclass
05-Apr-2017 15:57:40     [javac] warning: [options] bootstrap class path not set in conjunction with -source 1.5
05-Apr-2017 15:57:52     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/SHAPasswordDigest.java:48: warning: BASE64Encoder is internal proprietary API and may be removed in a future release
05-Apr-2017 15:57:52     [javac] import sun.misc.BASE64Encoder;
05-Apr-2017 15:57:52     [javac]                ^
05-Apr-2017 15:57:52     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/TagEventBeanUtil.java:72: warning: [deprecation] encode(String) in URLEncoder has been deprecated
05-Apr-2017 15:57:52     [javac]         return Resource.uriRef("tag:cet.ncsa.uiuc.edu,2008:/tag#" + URLEncoder.encode(tag)); //$NON-NLS-1$
05-Apr-2017 15:57:52     [javac]                                                                               ^
05-Apr-2017 15:57:52     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/VisualizationBeanUtil.java:73: warning: [deprecation] clone(T,PersonBean) in TupeloBeanUtil has been deprecated
05-Apr-2017 15:57:52     [javac]     public VisualizationBean clone(VisualizationBean bean, PersonBean creator)
05-Apr-2017 15:57:52     [javac]                              ^
05-Apr-2017 15:57:52     [javac]   where T is a type-variable:
05-Apr-2017 15:57:52     [javac]     T extends CETBean declared in class TupeloBeanUtil
05-Apr-2017 15:57:52     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/VisualizationBeanUtil.java:83: warning: [deprecation] clone(ConfigurationBean,PersonBean) in ConfigurationBeanUtil has been deprecated
05-Apr-2017 15:57:52     [javac]             ConfigurationBean configuration = cbu.clone(bean.getConfiguration(), creator);
05-Apr-2017 15:57:52     [javac]                                                  ^
05-Apr-2017 15:57:53     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/RBAC.java:442: warning: [deprecation] ADMIN_ROLE in MMDB has been deprecated
05-Apr-2017 15:57:53     [javac]             if (!t.getObject().equals(MMDB.ADMIN_ROLE) && !t.getObject().equals(MMDB.REGULAR_MEMBER_ROLE)) {
05-Apr-2017 15:57:53     [javac]                                           ^
05-Apr-2017 15:57:53     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/RBAC.java:442: warning: [deprecation] REGULAR_MEMBER_ROLE in MMDB has been deprecated
05-Apr-2017 15:57:53     [javac]             if (!t.getObject().equals(MMDB.ADMIN_ROLE) && !t.getObject().equals(MMDB.REGULAR_MEMBER_ROLE)) {
05-Apr-2017 15:57:53     [javac]                                                                                     ^
05-Apr-2017 15:57:53     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/RBAC.java:452: warning: [deprecation] ADMIN_ROLE in MMDB has been deprecated
05-Apr-2017 15:57:53     [javac]         createRole(MMDB.ADMIN_ROLE, "Administrator");
05-Apr-2017 15:57:53     [javac]                        ^
05-Apr-2017 15:57:53     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/RBAC.java:453: warning: [deprecation] REGULAR_MEMBER_ROLE in MMDB has been deprecated
05-Apr-2017 15:57:53     [javac]         createRole(MMDB.REGULAR_MEMBER_ROLE, "Member");
05-Apr-2017 15:57:53     [javac]                        ^
05-Apr-2017 15:57:53     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/SHAPasswordDigest.java:78: warning: BASE64Encoder is internal proprietary API and may be removed in a future release
05-Apr-2017 15:57:53     [javac]         BASE64Encoder encoder = new BASE64Encoder();
05-Apr-2017 15:57:53     [javac]         ^
05-Apr-2017 15:57:53     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/SHAPasswordDigest.java:78: warning: BASE64Encoder is internal proprietary API and may be removed in a future release
05-Apr-2017 15:57:53     [javac]         BASE64Encoder encoder = new BASE64Encoder();
05-Apr-2017 15:57:53     [javac]                                     ^
05-Apr-2017 15:57:53     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/workflow/dao/WorkflowStepDAO.java:28: warning: [deprecation] Rdf in Vocabulary has been deprecated
05-Apr-2017 15:57:53     [javac]         uf.addPattern(new Pattern("data", Vocabulary.Rdf.TYPE, Cyberintegrator.PARAMETER)); //$NON-NLS-1$
05-Apr-2017 15:57:53     [javac]                                                     ^
05-Apr-2017 15:57:53     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/workflow/dao/WorkflowStepDAO.java:40: warning: [deprecation] Rdf in Vocabulary has been deprecated
05-Apr-2017 15:57:53     [javac]         uf.addPattern(new Pattern("data", Vocabulary.Rdf.TYPE, Cyberintegrator.PARAMETER)); //$NON-NLS-1$
05-Apr-2017 15:57:53     [javac]                                                     ^
05-Apr-2017 15:57:53     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/workflow/dao/WorkflowStepDAO.java:58: warning: [deprecation] Rdf in Vocabulary has been deprecated
05-Apr-2017 15:57:53     [javac]         uf.addPattern(new Pattern("input", Vocabulary.Rdf.TYPE, Cyberintegrator.DATASET)); //$NON-NLS-1$
05-Apr-2017 15:57:53     [javac]                                                      ^
05-Apr-2017 15:57:53     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/workflow/dao/WorkflowStepDAO.java:82: warning: [deprecation] Rdf in Vocabulary has been deprecated
05-Apr-2017 15:57:53     [javac]         uf.addPattern(new Pattern("output", Vocabulary.Rdf.TYPE, Cyberintegrator.DATASET)); //$NON-NLS-1$
05-Apr-2017 15:57:53     [javac]                                                       ^
05-Apr-2017 15:57:53     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/workflow/dao/WorkflowToolDataDAO.java:26: warning: [deprecation] Rdf in Vocabulary has been deprecated
05-Apr-2017 15:57:53     [javac]         uf.addPattern(new Pattern("data", Vocabulary.Rdf.TYPE, Cyberintegrator.TOOL_DATA)); //$NON-NLS-1$
05-Apr-2017 15:57:53     [javac]                                                     ^
05-Apr-2017 15:57:53     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/workflow/dao/WorkflowToolDataDAO.java:41: warning: [deprecation] Rdf in Vocabulary has been deprecated
05-Apr-2017 15:57:53     [javac]         uf.addPattern(new Pattern("data", Vocabulary.Rdf.TYPE, Cyberintegrator.TOOL_DATA)); //$NON-NLS-1$
05-Apr-2017 15:57:53     [javac]                                                     ^
05-Apr-2017 15:57:53     [javac] 17 warnings
05-Apr-2017 15:57:53       [jar] Building jar: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/WEB-INF/lib/cet-bean-tupelo.jar
05-Apr-2017 15:57:53    [delete] Deleting directory /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/beanclass
05-Apr-2017 15:57:53
05-Apr-2017 15:57:53 updateversion:
05-Apr-2017 15:57:53
05-Apr-2017 15:57:53 clean:
05-Apr-2017 15:57:53
05-Apr-2017 15:57:53 compile:
05-Apr-2017 15:57:53     [mkdir] Created dir: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/WEB-INF/classes
05-Apr-2017 15:57:53     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/build.xml:126: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds
05-Apr-2017 15:57:53     [javac] Compiling 591 source files to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/WEB-INF/classes
05-Apr-2017 15:57:57     [javac] Note: Some input files use unchecked or unsafe operations.
05-Apr-2017 15:57:57     [javac] Note: Recompile with -Xlint:unchecked for details.
05-Apr-2017 15:57:57
05-Apr-2017 15:57:57 gwtc:
05-Apr-2017 15:57:58      [java] Apr 05, 2017 3:57:58 PM java.util.prefs.FileSystemPreferences$6 run
05-Apr-2017 15:57:58      [java] WARNING: Prefs file removed in background /home/bamboo/.java/.userPrefs/com/google/gwt/dev/shell/prefs.xml
05-Apr-2017 15:57:58      [java] Compiling module edu.illinois.ncsa.mmdb.web.MMDB
05-Apr-2017 15:58:09      [java]    Validating newly compiled units
05-Apr-2017 15:58:09      [java]       Ignored 1 unit with compilation errors in first pass.
05-Apr-2017 15:58:09      [java] Compile with -strict or with -logLevel set to TRACE or DEBUG to see all errors.
05-Apr-2017 15:58:28      [java] Exception in thread "Timer-0" java.lang.NoClassDefFoundError: org/w3c/dom/ElementTraversal
05-Apr-2017 15:58:28      [java]         at java.lang.ClassLoader.defineClass1(Native Method)
05-Apr-2017 15:58:28      [java]         at java.lang.ClassLoader.defineClass(ClassLoader.java:800)
05-Apr-2017 15:58:28      [java]         at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:142)
05-Apr-2017 15:58:28      [java]         at java.net.URLClassLoader.defineClass(URLClassLoader.java:449)
05-Apr-2017 15:58:28      [java]         at java.net.URLClassLoader.access$100(URLClassLoader.java:71)
05-Apr-2017 15:58:28      [java]         at java.net.URLClassLoader$1.run(URLClassLoader.java:361)
05-Apr-2017 15:58:28      [java]         at java.net.URLClassLoader$1.run(URLClassLoader.java:355)
05-Apr-2017 15:58:28      [java]         at java.security.AccessController.doPrivileged(Native Method)
05-Apr-2017 15:58:28      [java]         at java.net.URLClassLoader.findClass(URLClassLoader.java:354)
05-Apr-2017 15:58:28      [java]         at java.lang.ClassLoader.loadClass(ClassLoader.java:425)
05-Apr-2017 15:58:28      [java]         at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:308)
05-Apr-2017 15:58:28      [java]         at java.lang.ClassLoader.loadClass(ClassLoader.java:358)
05-Apr-2017 15:58:28      [java]         at org.apache.xerces.dom.DOMImplementationImpl.createDocument(Unknown Source)
05-Apr-2017 15:58:28      [java]         at org.apache.xerces.dom.CoreDOMImplementationImpl.createDocument(Unknown Source)
05-Apr-2017 15:58:28      [java]         at java.util.prefs.XmlSupport.createPrefsDoc(XmlSupport.java:228)
05-Apr-2017 15:58:28      [java]         at java.util.prefs.XmlSupport.exportMap(XmlSupport.java:343)
05-Apr-2017 15:58:28      [java]         at java.util.prefs.FileSystemPreferences$7.run(FileSystemPreferences.java:622)
05-Apr-2017 15:58:28      [java]         at java.util.prefs.FileSystemPreferences$7.run(FileSystemPreferences.java:615)
05-Apr-2017 15:58:28      [java]         at java.security.AccessController.doPrivileged(Native Method)
05-Apr-2017 15:58:28      [java]         at java.util.prefs.FileSystemPreferences.writeBackCache(FileSystemPreferences.java:614)
05-Apr-2017 15:58:28      [java]         at java.util.prefs.FileSystemPreferences.syncSpiPrivileged(FileSystemPreferences.java:801)
05-Apr-2017 15:58:28      [java]         at java.util.prefs.FileSystemPreferences.access$2300(FileSystemPreferences.java:50)
05-Apr-2017 15:58:28      [java]         at java.util.prefs.FileSystemPreferences$12.run(FileSystemPreferences.java:771)
05-Apr-2017 15:58:28      [java]         at java.util.prefs.FileSystemPreferences$12.run(FileSystemPreferences.java:769)
05-Apr-2017 15:58:28      [java]         at java.security.AccessController.doPrivileged(Native Method)
05-Apr-2017 15:58:28      [java]         at java.util.prefs.FileSystemPreferences.syncSpi(FileSystemPreferences.java:768)
05-Apr-2017 15:58:28      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1332)
05-Apr-2017 15:58:28      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
05-Apr-2017 15:58:28      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
05-Apr-2017 15:58:28      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
05-Apr-2017 15:58:28      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
05-Apr-2017 15:58:28      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
05-Apr-2017 15:58:28      [java]         at java.util.prefs.AbstractPreferences.sync(AbstractPreferences.java:1323)
05-Apr-2017 15:58:28      [java]         at java.util.prefs.FileSystemPreferences.sync(FileSystemPreferences.java:747)
05-Apr-2017 15:58:28      [java]         at java.util.prefs.FileSystemPreferences.flush(FileSystemPreferences.java:824)
05-Apr-2017 15:58:28      [java]         at java.util.prefs.FileSystemPreferences.syncWorld(FileSystemPreferences.java:464)
05-Apr-2017 15:58:28      [java]         at java.util.prefs.FileSystemPreferences.access$1200(FileSystemPreferences.java:50)
05-Apr-2017 15:58:28      [java]         at java.util.prefs.FileSystemPreferences$3.run(FileSystemPreferences.java:432)
05-Apr-2017 15:58:28      [java]         at java.util.TimerThread.mainLoop(Timer.java:555)
05-Apr-2017 15:58:28      [java]         at java.util.TimerThread.run(Timer.java:505)
05-Apr-2017 15:58:28      [java] Caused by: java.lang.ClassNotFoundException: org.w3c.dom.ElementTraversal
05-Apr-2017 15:58:28      [java]         at java.net.URLClassLoader$1.run(URLClassLoader.java:366)
05-Apr-2017 15:58:28      [java]         at java.net.URLClassLoader$1.run(URLClassLoader.java:355)
05-Apr-2017 15:58:28      [java]         at java.security.AccessController.doPrivileged(Native Method)
05-Apr-2017 15:58:28      [java]         at java.net.URLClassLoader.findClass(URLClassLoader.java:354)
05-Apr-2017 15:58:28      [java]         at java.lang.ClassLoader.loadClass(ClassLoader.java:425)
05-Apr-2017 15:58:28      [java]         at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:308)
05-Apr-2017 15:58:28      [java]         at java.lang.ClassLoader.loadClass(ClassLoader.java:358)
05-Apr-2017 15:58:28      [java]         ... 40 more
05-Apr-2017 15:58:28      [java]    Compiling 6 permutations
05-Apr-2017 15:58:28      [java]       Compiling permutation 0...
05-Apr-2017 15:58:36      [java]       Compiling permutation 1...
05-Apr-2017 15:58:43      [java]       Compiling permutation 2...
05-Apr-2017 15:58:49      [java]       Compiling permutation 3...
05-Apr-2017 15:58:55      [java]       Compiling permutation 4...
05-Apr-2017 15:59:01      [java]       Compiling permutation 5...
05-Apr-2017 15:59:08      [java]    Compile of permutations succeeded
05-Apr-2017 15:59:08      [java] Exception in thread "Thread-1" java.lang.NoClassDefFoundError: org/w3c/dom/ElementTraversal
05-Apr-2017 15:59:08      [java]         at java.lang.ClassLoader.defineClass1(Native Method)
05-Apr-2017 15:59:08      [java]         at java.lang.ClassLoader.defineClass(ClassLoader.java:800)
05-Apr-2017 15:59:08      [java]         at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:142)
05-Apr-2017 15:59:08      [java]         at java.net.URLClassLoader.defineClass(URLClassLoader.java:449)
05-Apr-2017 15:59:08      [java]         at java.net.URLClassLoader.access$100(URLClassLoader.java:71)
05-Apr-2017 15:59:08      [java]         at java.net.URLClassLoader$1.run(URLClassLoader.java:361)
05-Apr-2017 15:59:08      [java]         at java.net.URLClassLoader$1.run(URLClassLoader.java:355)
05-Apr-2017 15:59:08      [java]         at java.security.AccessController.doPrivileged(Native Method)
05-Apr-2017 15:59:08      [java]         at java.net.URLClassLoader.findClass(URLClassLoader.java:354)
05-Apr-2017 15:59:08      [java]         at java.lang.ClassLoader.loadClass(ClassLoader.java:425)
05-Apr-2017 15:59:08      [java]         at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:308)
05-Apr-2017 15:59:08      [java]         at java.lang.ClassLoader.loadClass(ClassLoader.java:358)
05-Apr-2017 15:59:08      [java]         at org.apache.xerces.dom.DOMImplementationImpl.createDocument(Unknown Source)
05-Apr-2017 15:59:08      [java]         at org.apache.xerces.dom.CoreDOMImplementationImpl.createDocument(Unknown Source)
05-Apr-2017 15:59:08      [java]         at java.util.prefs.XmlSupport.createPrefsDoc(XmlSupport.java:228)
05-Apr-2017 15:59:08      [java]         at java.util.prefs.XmlSupport.exportMap(XmlSupport.java:343)
05-Apr-2017 15:59:08      [java]         at java.util.prefs.FileSystemPreferences$7.run(FileSystemPreferences.java:622)
05-Apr-2017 15:59:08      [java]         at java.util.prefs.FileSystemPreferences$7.run(FileSystemPreferences.java:615)
05-Apr-2017 15:59:08      [java]         at java.security.AccessController.doPrivileged(Native Method)
05-Apr-2017 15:59:08      [java]         at java.util.prefs.FileSystemPreferences.writeBackCache(FileSystemPreferences.java:614)
05-Apr-2017 15:59:08      [java]         at java.util.prefs.FileSystemPreferences.syncSpiPrivileged(FileSystemPreferences.java:801)
05-Apr-2017 15:59:08      [java]         at java.util.prefs.FileSystemPreferences.access$2300(FileSystemPreferences.java:50)
05-Apr-2017 15:59:08      [java]         at java.util.prefs.FileSystemPreferences$12.run(FileSystemPreferences.java:771)
05-Apr-2017 15:59:08      [java]         at java.util.prefs.FileSystemPreferences$12.run(FileSystemPreferences.java:769)
05-Apr-2017 15:59:08      [java]         at java.security.AccessController.doPrivileged(Native Method)
05-Apr-2017 15:59:08      [java]         at java.util.prefs.FileSystemPreferences.syncSpi(FileSystemPreferences.java:768)
05-Apr-2017 15:59:08      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1332)
05-Apr-2017 15:59:08      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
05-Apr-2017 15:59:08      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
05-Apr-2017 15:59:08      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
05-Apr-2017 15:59:08      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
05-Apr-2017 15:59:08      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
05-Apr-2017 15:59:08      [java]         at java.util.prefs.AbstractPreferences.sync(AbstractPreferences.java:1323)
05-Apr-2017 15:59:08      [java]         at java.util.prefs.FileSystemPreferences.sync(FileSystemPreferences.java:747)
05-Apr-2017 15:59:08      [java]         at java.util.prefs.FileSystemPreferences.flush(FileSystemPreferences.java:824)
05-Apr-2017 15:59:08      [java]         at java.util.prefs.FileSystemPreferences.syncWorld(FileSystemPreferences.java:464)
05-Apr-2017 15:59:08      [java]         at java.util.prefs.FileSystemPreferences.access$1200(FileSystemPreferences.java:50)
05-Apr-2017 15:59:08      [java]         at java.util.prefs.FileSystemPreferences$4$1.run(FileSystemPreferences.java:442)
05-Apr-2017 15:59:08      [java] Caused by: java.lang.ClassNotFoundException: org.w3c.dom.ElementTraversal
05-Apr-2017 15:59:08      [java]         at java.net.URLClassLoader$1.run(URLClassLoader.java:366)
05-Apr-2017 15:59:08      [java]         at java.net.URLClassLoader$1.run(URLClassLoader.java:355)
05-Apr-2017 15:59:08      [java]         at java.security.AccessController.doPrivileged(Native Method)
05-Apr-2017 15:59:08      [java]         at java.net.URLClassLoader.findClass(URLClassLoader.java:354)
05-Apr-2017 15:59:08      [java]         at java.lang.ClassLoader.loadClass(ClassLoader.java:425)
05-Apr-2017 15:59:08      [java]         at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:308)
05-Apr-2017 15:59:08      [java]         at java.lang.ClassLoader.loadClass(ClassLoader.java:358)
05-Apr-2017 15:59:08      [java]         ... 38 more
05-Apr-2017 15:59:08      [java] Linking into /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/mmdb
05-Apr-2017 15:59:08      [java]    Link succeeded
05-Apr-2017 15:59:08      [java]    Compilation succeeded -- 69.985s
05-Apr-2017 15:59:09      [java] Apr 05, 2017 3:59:09 PM java.util.prefs.FileSystemPreferences$6 run
05-Apr-2017 15:59:09      [java] WARNING: Prefs file removed in background /home/bamboo/.java/.userPrefs/com/google/gwt/dev/shell/prefs.xml
05-Apr-2017 15:59:09      [java] Compiling module edu.illinois.ncsa.mmdb.web.Embed
05-Apr-2017 15:59:11      [java]    Validating newly compiled units
05-Apr-2017 15:59:11      [java]       Ignored 1 unit with compilation errors in first pass.
05-Apr-2017 15:59:11      [java] Compile with -strict or with -logLevel set to TRACE or DEBUG to see all errors.
05-Apr-2017 15:59:26      [java]    Compiling 6 permutations
05-Apr-2017 15:59:26      [java]       Compiling permutation 0...
05-Apr-2017 15:59:30      [java]       Compiling permutation 1...
05-Apr-2017 15:59:33      [java]       Compiling permutation 2...
05-Apr-2017 15:59:35      [java]       Compiling permutation 3...
05-Apr-2017 15:59:38      [java]       Compiling permutation 4...
05-Apr-2017 15:59:39      [java] Exception in thread "Timer-0" java.lang.NoClassDefFoundError: org/w3c/dom/ElementTraversal
05-Apr-2017 15:59:39      [java]         at java.lang.ClassLoader.defineClass1(Native Method)
05-Apr-2017 15:59:39      [java]         at java.lang.ClassLoader.defineClass(ClassLoader.java:800)
05-Apr-2017 15:59:39      [java]         at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:142)
05-Apr-2017 15:59:39      [java]         at java.net.URLClassLoader.defineClass(URLClassLoader.java:449)
05-Apr-2017 15:59:39      [java]         at java.net.URLClassLoader.access$100(URLClassLoader.java:71)
05-Apr-2017 15:59:39      [java]         at java.net.URLClassLoader$1.run(URLClassLoader.java:361)
05-Apr-2017 15:59:39      [java]         at java.net.URLClassLoader$1.run(URLClassLoader.java:355)
05-Apr-2017 15:59:39      [java]         at java.security.AccessController.doPrivileged(Native Method)
05-Apr-2017 15:59:39      [java]         at java.net.URLClassLoader.findClass(URLClassLoader.java:354)
05-Apr-2017 15:59:39      [java]         at java.lang.ClassLoader.loadClass(ClassLoader.java:425)
05-Apr-2017 15:59:39      [java]         at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:308)
05-Apr-2017 15:59:39      [java]         at java.lang.ClassLoader.loadClass(ClassLoader.java:358)
05-Apr-2017 15:59:39      [java]         at org.apache.xerces.dom.DOMImplementationImpl.createDocument(Unknown Source)
05-Apr-2017 15:59:39      [java]         at org.apache.xerces.dom.CoreDOMImplementationImpl.createDocument(Unknown Source)
05-Apr-2017 15:59:39      [java]         at java.util.prefs.XmlSupport.createPrefsDoc(XmlSupport.java:228)
05-Apr-2017 15:59:39      [java]         at java.util.prefs.XmlSupport.exportMap(XmlSupport.java:343)
05-Apr-2017 15:59:39      [java]         at java.util.prefs.FileSystemPreferences$7.run(FileSystemPreferences.java:622)
05-Apr-2017 15:59:39      [java]         at java.util.prefs.FileSystemPreferences$7.run(FileSystemPreferences.java:615)
05-Apr-2017 15:59:39      [java]         at java.security.AccessController.doPrivileged(Native Method)
05-Apr-2017 15:59:39      [java]         at java.util.prefs.FileSystemPreferences.writeBackCache(FileSystemPreferences.java:614)
05-Apr-2017 15:59:39      [java]         at java.util.prefs.FileSystemPreferences.syncSpiPrivileged(FileSystemPreferences.java:801)
05-Apr-2017 15:59:39      [java]         at java.util.prefs.FileSystemPreferences.access$2300(FileSystemPreferences.java:50)
05-Apr-2017 15:59:39      [java]         at java.util.prefs.FileSystemPreferences$12.run(FileSystemPreferences.java:771)
05-Apr-2017 15:59:39      [java]         at java.util.prefs.FileSystemPreferences$12.run(FileSystemPreferences.java:769)
05-Apr-2017 15:59:39      [java]         at java.security.AccessController.doPrivileged(Native Method)
05-Apr-2017 15:59:39      [java]         at java.util.prefs.FileSystemPreferences.syncSpi(FileSystemPreferences.java:768)
05-Apr-2017 15:59:39      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1332)
05-Apr-2017 15:59:39      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
05-Apr-2017 15:59:39      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
05-Apr-2017 15:59:39      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
05-Apr-2017 15:59:39      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
05-Apr-2017 15:59:39      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
05-Apr-2017 15:59:39      [java]         at java.util.prefs.AbstractPreferences.sync(AbstractPreferences.java:1323)
05-Apr-2017 15:59:39      [java]         at java.util.prefs.FileSystemPreferences.sync(FileSystemPreferences.java:747)
05-Apr-2017 15:59:39      [java]         at java.util.prefs.FileSystemPreferences.flush(FileSystemPreferences.java:824)
05-Apr-2017 15:59:39      [java]         at java.util.prefs.FileSystemPreferences.syncWorld(FileSystemPreferences.java:464)
05-Apr-2017 15:59:39      [java]         at java.util.prefs.FileSystemPreferences.access$1200(FileSystemPreferences.java:50)
05-Apr-2017 15:59:39      [java]         at java.util.prefs.FileSystemPreferences$3.run(FileSystemPreferences.java:432)
05-Apr-2017 15:59:39      [java]         at java.util.TimerThread.mainLoop(Timer.java:555)
05-Apr-2017 15:59:39      [java]         at java.util.TimerThread.run(Timer.java:505)
05-Apr-2017 15:59:39      [java] Caused by: java.lang.ClassNotFoundException: org.w3c.dom.ElementTraversal
05-Apr-2017 15:59:39      [java]         at java.net.URLClassLoader$1.run(URLClassLoader.java:366)
05-Apr-2017 15:59:39      [java]         at java.net.URLClassLoader$1.run(URLClassLoader.java:355)
05-Apr-2017 15:59:39      [java]         at java.security.AccessController.doPrivileged(Native Method)
05-Apr-2017 15:59:39      [java]         at java.net.URLClassLoader.findClass(URLClassLoader.java:354)
05-Apr-2017 15:59:39      [java]         at java.lang.ClassLoader.loadClass(ClassLoader.java:425)
05-Apr-2017 15:59:39      [java]         at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:308)
05-Apr-2017 15:59:39      [java]         at java.lang.ClassLoader.loadClass(ClassLoader.java:358)
05-Apr-2017 15:59:39      [java]         ... 40 more
05-Apr-2017 15:59:40      [java]       Compiling permutation 5...
05-Apr-2017 15:59:42      [java]    Compile of permutations succeeded
05-Apr-2017 15:59:43      [java] Linking into /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/embed
05-Apr-2017 15:59:43      [java]    Link succeeded
05-Apr-2017 15:59:43      [java]    Compilation succeeded -- 33.719s
05-Apr-2017 15:59:43      [java] Exception in thread "Thread-1" java.lang.NoClassDefFoundError: org/w3c/dom/ElementTraversal
05-Apr-2017 15:59:43      [java]         at java.lang.ClassLoader.defineClass1(Native Method)
05-Apr-2017 15:59:43      [java]         at java.lang.ClassLoader.defineClass(ClassLoader.java:800)
05-Apr-2017 15:59:43      [java]         at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:142)
05-Apr-2017 15:59:43      [java]         at java.net.URLClassLoader.defineClass(URLClassLoader.java:449)
05-Apr-2017 15:59:43      [java]         at java.net.URLClassLoader.access$100(URLClassLoader.java:71)
05-Apr-2017 15:59:43      [java]         at java.net.URLClassLoader$1.run(URLClassLoader.java:361)
05-Apr-2017 15:59:43      [java]         at java.net.URLClassLoader$1.run(URLClassLoader.java:355)
05-Apr-2017 15:59:43      [java]         at java.security.AccessController.doPrivileged(Native Method)
05-Apr-2017 15:59:43      [java]         at java.net.URLClassLoader.findClass(URLClassLoader.java:354)
05-Apr-2017 15:59:43      [java]         at java.lang.ClassLoader.loadClass(ClassLoader.java:425)
05-Apr-2017 15:59:43      [java]         at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:308)
05-Apr-2017 15:59:43      [java]         at java.lang.ClassLoader.loadClass(ClassLoader.java:358)
05-Apr-2017 15:59:43      [java]         at org.apache.xerces.dom.DOMImplementationImpl.createDocument(Unknown Source)
05-Apr-2017 15:59:43      [java]         at org.apache.xerces.dom.CoreDOMImplementationImpl.createDocument(Unknown Source)
05-Apr-2017 15:59:43      [java]         at java.util.prefs.XmlSupport.createPrefsDoc(XmlSupport.java:228)
05-Apr-2017 15:59:43      [java]         at java.util.prefs.XmlSupport.exportMap(XmlSupport.java:343)
05-Apr-2017 15:59:43      [java]         at java.util.prefs.FileSystemPreferences$7.run(FileSystemPreferences.java:622)
05-Apr-2017 15:59:43      [java]         at java.util.prefs.FileSystemPreferences$7.run(FileSystemPreferences.java:615)
05-Apr-2017 15:59:43      [java]         at java.security.AccessController.doPrivileged(Native Method)
05-Apr-2017 15:59:43      [java]         at java.util.prefs.FileSystemPreferences.writeBackCache(FileSystemPreferences.java:614)
05-Apr-2017 15:59:43      [java]         at java.util.prefs.FileSystemPreferences.syncSpiPrivileged(FileSystemPreferences.java:801)
05-Apr-2017 15:59:43      [java]         at java.util.prefs.FileSystemPreferences.access$2300(FileSystemPreferences.java:50)
05-Apr-2017 15:59:43      [java]         at java.util.prefs.FileSystemPreferences$12.run(FileSystemPreferences.java:771)
05-Apr-2017 15:59:43      [java]         at java.util.prefs.FileSystemPreferences$12.run(FileSystemPreferences.java:769)
05-Apr-2017 15:59:43      [java]         at java.security.AccessController.doPrivileged(Native Method)
05-Apr-2017 15:59:43      [java]         at java.util.prefs.FileSystemPreferences.syncSpi(FileSystemPreferences.java:768)
05-Apr-2017 15:59:43      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1332)
05-Apr-2017 15:59:43      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
05-Apr-2017 15:59:43      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
05-Apr-2017 15:59:43      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
05-Apr-2017 15:59:43      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
05-Apr-2017 15:59:43      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
05-Apr-2017 15:59:43      [java]         at java.util.prefs.AbstractPreferences.sync(AbstractPreferences.java:1323)
05-Apr-2017 15:59:43      [java]         at java.util.prefs.FileSystemPreferences.sync(FileSystemPreferences.java:747)
05-Apr-2017 15:59:43      [java]         at java.util.prefs.FileSystemPreferences.flush(FileSystemPreferences.java:824)
05-Apr-2017 15:59:43      [java]         at java.util.prefs.FileSystemPreferences.syncWorld(FileSystemPreferences.java:464)
05-Apr-2017 15:59:43      [java]         at java.util.prefs.FileSystemPreferences.access$1200(FileSystemPreferences.java:50)
05-Apr-2017 15:59:43      [java]         at java.util.prefs.FileSystemPreferences$4$1.run(FileSystemPreferences.java:442)
05-Apr-2017 15:59:43      [java] Caused by: java.lang.ClassNotFoundException: org.w3c.dom.ElementTraversal
05-Apr-2017 15:59:43      [java]         at java.net.URLClassLoader$1.run(URLClassLoader.java:366)
05-Apr-2017 15:59:43      [java]         at java.net.URLClassLoader$1.run(URLClassLoader.java:355)
05-Apr-2017 15:59:43      [java]         at java.security.AccessController.doPrivileged(Native Method)
05-Apr-2017 15:59:43      [java]         at java.net.URLClassLoader.findClass(URLClassLoader.java:354)
05-Apr-2017 15:59:43      [java]         at java.lang.ClassLoader.loadClass(ClassLoader.java:425)
05-Apr-2017 15:59:43      [java]         at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:308)
05-Apr-2017 15:59:43      [java]         at java.lang.ClassLoader.loadClass(ClassLoader.java:358)
05-Apr-2017 15:59:43      [java]         ... 38 more
05-Apr-2017 15:59:43
05-Apr-2017 15:59:43 resources:
05-Apr-2017 15:59:43      [copy] Copying 6 files to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/WEB-INF/classes
05-Apr-2017 15:59:43      [copy] Copying 1 file to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/WEB-INF/classes
05-Apr-2017 15:59:43
05-Apr-2017 15:59:43 war:
05-Apr-2017 15:59:43       [zip] Building zip: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/medici.war
05-Apr-2017 15:59:46
05-Apr-2017 15:59:46 bamboo:
05-Apr-2017 15:59:46
05-Apr-2017 15:59:46 BUILD SUCCESSFUL
05-Apr-2017 15:59:46 Total time: 2 minutes 8 seconds
05-Apr-2017 15:59:46 Finished task 'Web App' with result: Success
05-Apr-2017 15:59:46 Running post build plugin 'Docker Container Cleanup'
05-Apr-2017 15:59:46 Running post build plugin 'NCover Results Collector'
05-Apr-2017 15:59:46 Running post build plugin 'Clover Results Collector'
05-Apr-2017 15:59:46 Running post build plugin 'npm Cache Cleanup'
05-Apr-2017 15:59:46 Running post build plugin 'Artifact Copier'
05-Apr-2017 15:59:46 Publishing an artifact: medici.war
05-Apr-2017 15:59:49 Finished publishing of artifact Job artifact: [medici.war], pattern: [medici.war] anchored at: [mmdb-gwt/edu.illinois.ncsa.mmdb.web] in 3.154 s
05-Apr-2017 15:59:49 Finalising the build...
05-Apr-2017 15:59:49 Stopping timer.
05-Apr-2017 15:59:49 Build MMDB-MEDICI78-JOB1-143 completed.
05-Apr-2017 15:59:50 Running on server: post build plugin 'NCover Results Collector'
05-Apr-2017 15:59:50 Running on server: post build plugin 'Build Hanging Detection Configuration'
05-Apr-2017 15:59:50 Running on server: post build plugin 'Clover Delta Calculator'
05-Apr-2017 15:59:50 Running on server: post build plugin 'Maven Dependencies Postprocessor'
05-Apr-2017 15:59:50 All post build plugins have finished
05-Apr-2017 15:59:50 Generating build results summary...
05-Apr-2017 15:59:50 Saving build results to disk...
05-Apr-2017 15:59:50 Logging substituted variables...
05-Apr-2017 15:59:50 Indexing build results...
05-Apr-2017 15:59:50 Finished building MMDB-MEDICI78-JOB1-143.