Date
Attendees
Agenda
- Running 2020 dataset
- maize-basalt
L1 output
10:18:25 INFO Opening C:/Workspace-ameriflux/ameriflux-pipeline/ameriflux_pipeline/data/2020/data_maize_basalt/pyfluxpro/output_ameriflux/L1_Ameriflux.txt 10:18:28 WARNING Global: existing time zone replaced with America/Chicago 10:18:28 INFO Starting L1 processing 10:18:28 INFO Parsing the L1 control file 10:18:28 INFO Reading Excel workbook pyfluxpro_input_ameriflux.xlsx 10:18:41 WARNING Variable CG3UpCo_Avg not found on sheet Met_data_30, skipping ... 10:18:41 WARNING Variable CG3DnCo_Avg not found on sheet Met_data_30, skipping ... 10:18:41 WARNING Variable NetTot_Avg not found on sheet Met_data_30, skipping ... 10:18:41 WARNING Variable VWC_5cm_Avg not found on sheet Met_data_30, skipping ... 10:18:41 WARNING Variable VWC_10cm_Avg not found on sheet Met_data_30, skipping ... 10:18:41 WARNING Variable VWC_20cm_Avg not found on sheet Met_data_30, skipping ... 10:18:41 WARNING Variable VWC_30cm_Avg not found on sheet Met_data_30, skipping ... 10:18:41 WARNING Variable VWC_50cm_Avg not found on sheet Met_data_30, skipping ... 10:18:41 WARNING Variable VWC_60cm_Avg not found on sheet Met_data_30, skipping ... 10:18:41 WARNING Variable VWC_75cm_Avg not found on sheet Met_data_30, skipping ... 10:18:41 WARNING Variable VWC_100cm_Avg not found on sheet Met_data_30, skipping ... 10:18:41 WARNING Variable CM3Up_Avg not found on sheet Met_data_30, skipping ... 10:18:41 WARNING Variable CM3Dn_Avg not found on sheet Met_data_30, skipping ... 10:18:41 WARNING Variable TIMESTAMP_END not found on sheet Met_data_30, skipping ... 10:18:41 WARNING Variable TIMESTAMP_START not found on sheet Met_data_30, skipping ... 10:18:41 WARNING Variable TC_5cm_Avg not found on sheet Met_data_30, skipping ... 10:18:41 WARNING Variable TC_10cm_Avg not found on sheet Met_data_30, skipping ... 10:18:41 WARNING Variable TC_20cm_Avg not found on sheet Met_data_30, skipping ... 10:18:41 WARNING Variable TC_30cm_Avg not found on sheet Met_data_30, skipping ... 10:18:41 WARNING Variable TC_40cm_Avg not found on sheet Met_data_30, skipping ... 10:18:41 WARNING Variable TC_50cm_Avg not found on sheet Met_data_30, skipping ... 10:18:41 WARNING Variable TC_60cm_Avg not found on sheet Met_data_30, skipping ... 10:18:41 WARNING Variable TC_75cm_Avg not found on sheet Met_data_30, skipping ... 10:18:41 WARNING Variable TC_100cm_Avg not found on sheet Met_data_30, skipping ... 10:18:41 INFO Merging full_output,Met_data_30 to a single data frame 10:18:41 INFO Converting data frame to data structure 10:18:42 INFO Getting variances from standard deviations & vice versa 10:18:42 INFO Checking missing data and QC flags are consistent 10:18:44 INFO Writing netCDF file maize_basalt_2020_L1.nc 10:18:44 INFO Finished L1 processing 10:18:44 INFO
L2 data
14:00:36 WARNING Variable TC_40cm_Avg not found on sheet Met_data_30, skipping ... 14:00:36 WARNING Variable TC_50cm_Avg not found on sheet Met_data_30, skipping ... 14:00:36 WARNING Variable TC_60cm_Avg not found on sheet Met_data_30, skipping ... 14:00:36 WARNING Variable TC_75cm_Avg not found on sheet Met_data_30, skipping ... 14:00:36 WARNING Variable TC_100cm_Avg not found on sheet Met_data_30, skipping ... 14:00:36 INFO Merging full_output,Met_data_30 to a single data frame 14:00:36 INFO Converting data frame to data structure 14:00:37 INFO Getting variances from standard deviations & vice versa 14:00:37 INFO Checking missing data and QC flags are consistent 14:00:39 INFO Writing netCDF file maize_basalt_2020_L1.nc 14:00:39 INFO Finished L1 processing 14:00:39 INFO 14:00:45 INFO Opening C:/Workspace-ameriflux/ameriflux-pipeline/ameriflux_pipeline/data/2020/data_maize_basalt/pyfluxpro/output_ameriflux/L2_ameriflux.txt 14:00:45 INFO Updated and saved control file L2_ameriflux.txt 14:00:59 INFO Starting L2 processing 14:00:59 INFO Reading netCDF file maize_basalt_2020_L1.nc 14:00:59 INFO Got data from 2020-07-01 12:00:00 to 2020-07-01 15:30:00 14:00:59 INFO Doing the QC checks at level L2 14:00:59 WARNING QC checks: series Fld not found in data structure, skipping ... 14:00:59 WARNING QC checks: series Flu not found in data structure, skipping ... 14:00:59 WARNING QC checks: series NETRAD not found in data structure, skipping ... 14:00:59 WARNING QC checks: series SWC_3_1_1 not found in data structure, skipping ... 14:00:59 WARNING QC checks: series SWC_3_2_1 not found in data structure, skipping ... 14:00:59 WARNING QC checks: series SWC_3_3_1 not found in data structure, skipping ... 14:00:59 WARNING QC checks: series SWC_3_4_1 not found in data structure, skipping ... 14:00:59 WARNING QC checks: series SWC_3_5_1 not found in data structure, skipping ... 14:00:59 WARNING QC checks: series SWC_3_6_1 not found in data structure, skipping ... 14:00:59 WARNING QC checks: series SWC_3_7_1 not found in data structure, skipping ... 14:00:59 WARNING QC checks: series SWC_3_8_1 not found in data structure, skipping ... 14:00:59 WARNING QC checks: series SWC_3_9_1 not found in data structure, skipping ... 14:00:59 WARNING QC checks: series SW_IN not found in data structure, skipping ... 14:00:59 WARNING QC checks: series SW_OUT not found in data structure, skipping ... 14:00:59 WARNING QC checks: series TS_3_1_1 not found in data structure, skipping ... 14:00:59 WARNING QC checks: series TS_3_2_1 not found in data structure, skipping ... 14:00:59 WARNING QC checks: series TS_3_3_1 not found in data structure, skipping ... 14:00:59 WARNING QC checks: series TS_3_4_1 not found in data structure, skipping ... 14:00:59 WARNING QC checks: series TS_3_5_1 not found in data structure, skipping ... 14:00:59 WARNING QC checks: series TS_3_6_1 not found in data structure, skipping ... 14:00:59 WARNING QC checks: series TS_3_7_1 not found in data structure, skipping ... 14:00:59 WARNING QC checks: series TS_3_8_1 not found in data structure, skipping ... 14:00:59 WARNING QC checks: series TS_3_9_1 not found in data structure, skipping ... 14:00:59 WARNING Dependencies: series Fld not found in data structure, skipping ... 14:00:59 WARNING Dependencies: series Flu not found in data structure, skipping ... 14:00:59 WARNING Dependencies: series NETRAD not found in data structure, skipping ... 14:00:59 WARNING Dependencies: series SWC_3_1_1 not found in data structure, skipping ... 14:00:59 WARNING Dependencies: series SWC_3_2_1 not found in data structure, skipping ... 14:00:59 WARNING Dependencies: series SWC_3_3_1 not found in data structure, skipping ... 14:00:59 WARNING Dependencies: series SWC_3_4_1 not found in data structure, skipping ... 14:00:59 WARNING Dependencies: series SWC_3_5_1 not found in data structure, skipping ... 14:00:59 WARNING Dependencies: series SWC_3_6_1 not found in data structure, skipping ... 14:00:59 WARNING Dependencies: series SWC_3_7_1 not found in data structure, skipping ... 14:00:59 WARNING Dependencies: series SWC_3_8_1 not found in data structure, skipping ... 14:00:59 WARNING Dependencies: series SWC_3_9_1 not found in data structure, skipping ... 14:00:59 WARNING Dependencies: series SW_IN not found in data structure, skipping ... 14:00:59 WARNING Dependencies: series SW_OUT not found in data structure, skipping ... 14:00:59 WARNING Dependencies: series TS_3_1_1 not found in data structure, skipping ... 14:00:59 WARNING Dependencies: series TS_3_2_1 not found in data structure, skipping ... 14:00:59 WARNING Dependencies: series TS_3_3_1 not found in data structure, skipping ... 14:00:59 WARNING Dependencies: series TS_3_4_1 not found in data structure, skipping ... 14:00:59 WARNING Dependencies: series TS_3_5_1 not found in data structure, skipping ... 14:00:59 WARNING Dependencies: series TS_3_6_1 not found in data structure, skipping ... 14:00:59 WARNING Dependencies: series TS_3_7_1 not found in data structure, skipping ... 14:00:59 WARNING Dependencies: series TS_3_8_1 not found in data structure, skipping ... 14:00:59 WARNING Dependencies: series TS_3_9_1 not found in data structure, skipping ... 14:00:59 INFO Doing the SONIC check 14:00:59 INFO No dependent variables found, skipping SONIC check ... 14:00:59 WARNING IRGA type not specified in Options section, using default (Li-7500) 14:00:59 INFO Doing the IRGA (Li-7500) check 14:00:59 INFO No dependent variables found, skipping IRGA check ... 14:00:59 INFO Checking missing data and QC flags are consistent 14:00:59 INFO Writing flag stats to maize_basalt_2020_L2_FlagStats.xls 14:00:59 INFO Writing netCDF file maize_basalt_2020_L2.nc 14:00:59 INFO Finished L2 processing 14:00:59 INFO Plotting L1 and L2 data 14:00:59 INFO Plotting series: ['SW_IN', 'SW_OUT', 'Fld', 'Flu', 'NETRAD'] 14:00:59 ERROR plttimeseries: series SW_IN not in data structure 14:00:59 ERROR plttimeseries: series SW_OUT not in data structure 14:00:59 ERROR plttimeseries: series Fld not in data structure 14:01:00 ERROR plttimeseries: series Flu not in data structure 14:01:00 ERROR plttimeseries: series NETRAD not in data structure 14:01:00 INFO Plotting series: ['TAU', 'USTAR', 'H', 'Fe', 'FC'] 14:01:03 INFO Plotting series: ['T_CANOPY', 'TA_1_1_1', 'TA_1_1_2', 'T_SONIC'] 14:01:05 INFO Plotting series: ['SWC_3_1_1', 'SWC_1_1_1', 'SWC_2_1_1', 'SWC_3_2_1', 'SWC_1_2_1', 'SWC_2_2_1', 'SWC_3_3_1'] 14:01:05 ERROR plttimeseries: series SWC_3_1_1 not in data structure 14:01:06 ERROR plttimeseries: series SWC_3_2_1 not in data structure 14:01:07 ERROR plttimeseries: series SWC_3_3_1 not in data structure 14:01:08 INFO Plotting series: ['SWC_3_4_1', 'SWC_3_5_1', 'SWC_1_3_1', 'SWC_2_3_1', 'SWC_3_6_1'] 14:01:08 ERROR plttimeseries: series SWC_3_4_1 not in data structure 14:01:08 ERROR plttimeseries: series SWC_3_5_1 not in data structure 14:01:09 ERROR plttimeseries: series SWC_3_6_1 not in data structure 14:01:10 INFO Plotting series: ['SWC_3_7_1', 'SWC_1_4_1', 'SWC_2_4_1', 'SWC_3_8_1', 'SWC_3_9_1'] 14:01:10 ERROR plttimeseries: series SWC_3_7_1 not in data structure 14:01:11 ERROR plttimeseries: series SWC_3_8_1 not in data structure 14:01:11 ERROR plttimeseries: series SWC_3_9_1 not in data structure 14:01:12 INFO Plotting series: ['TS_3_1_1', 'TS_1_1_1', 'TS_2_1_1', 'TS_3_2_1', 'TS_1_2_1', 'TS_2_2_1', 'TS_3_3_1'] 14:01:12 ERROR plttimeseries: series TS_3_1_1 not in data structure 14:01:12 ERROR plttimeseries: series TS_3_2_1 not in data structure 14:01:14 ERROR plttimeseries: series TS_3_3_1 not in data structure 14:01:15 INFO Plotting series: ['TS_3_4_1', 'TS_3_5_1', 'TS_1_3_1', 'TS_2_3_1', 'TS_3_6_1'] 14:01:15 ERROR plttimeseries: series TS_3_4_1 not in data structure 14:01:15 ERROR plttimeseries: series TS_3_5_1 not in data structure 14:01:15 ERROR plttimeseries: series TS_3_6_1 not in data structure 14:01:16 INFO Plotting series: ['TS_3_7_1', 'TS_1_4_1', 'TS_2_4_1', 'TS_3_8_1', 'TS_3_9_1'] 14:01:16 ERROR plttimeseries: series TS_3_7_1 not in data structure 14:01:17 ERROR plttimeseries: series TS_3_8_1 not in data structure 14:01:17 ERROR plttimeseries: series TS_3_9_1 not in data structure 14:01:18 INFO Plotting series: ['TS_1_1_1', 'SWC_1_1_1', 'G_1_1_1', 'G_2_1_1'] 14:01:20 INFO Plotting series: ['PA', 'WS', 'WD'] 14:01:22 INFO Plotting series: ['FC'] 14:01:23 INFO Plotting series: ['FETCH_70'] 14:01:24 INFO Finished plotting L1 and L2 data 14:01:24 INFO
- Presentation to Prof. Bernacchi