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https://github.com/nds-org/nds-labs/tree/v2

Research Data Management Tools

Name	Description	Packaged

apacheWeb server, https://httpd.apache.org/

Notes
browndog	Data transformation service, http://browndog.ncsa.illinois.edu/
clowder	Data hosting/sharing, https://clowder.ncsa.illinois.edu/
cyverse	Data storage/analysis, http://www.iplantcollaborative.org/
dataone	Archive, https://www.dataone.org/
dataverse	Archive, http://dataverse.org/
dspace	Archive, http://www.dspace.org/

eclipseIDE,

girder

Data hosting/sharing, http

https

eclipse

girder.readthedocs.org/en/latest/index.html

elasticsearchText indexing


globus	Data sharing, https://www.

elastic

co

cloud/signup

girder

hubzero

Data hosting/

Tool sharing,

http

girder

readthedocs.

en/latest/index.html

gitlabSource code management,


irods	Archive, http

https

about

gitlab.com

glassfishJava application server

owncloud

Cloud storage, https://

glassfish

java.net

globus


scidrive	Data hosting/sharing,

https

www

globus.

hubzero

solr

Tool sharing

Search,

https

hubzero

lucene.apache.org/solr/

irods

tworavens

Archive

Statistical tools, http://

irods.org/

datascience.iq.harvard.edu/about-tworavens

jupyterElectronic notebook


zenodo	Data & software publication, http://

jupyter

kallitheaSource code management,

Software Development Environments

Name	Description	Packaged	Notes
eclipse	https://

kallithea-scm

mediagoblin

eclipse che

Media publishing,

mediagoblin

www.eclipse.org/che/

mediawiki

idea

Wiki,

mediawiki

org

wiki

MediaWiki

moinmoin

pycharms

Wiki,

moinmo.in

www.jetbrains.com/pycharm/

mongodb

vscode

NoSQL database,

https://code.visualstudio.com/

Data analysis and visualization

Name	Description	Packaged	Notes
jupyter	Electronic notebook, http://jupyter

www.mongodb

mysql

rstudio

Database

IDE for R, https://www.

mysql

nginx

weka

Web server

Machine learning, http://

nginx.org/en

www.cs.waikato.ac.nz/ml/weka/

opencvComputer vision tools


yt	Data visualization, http://

opencv

yt-project.org/

owncloudCloud storage

Other services

Name	Description	Packaged
apache	Web server, https://

owncloud

httpd.apache.org/

postgres

elasticsearch

Database

Text indexing,

http

postgresql

org

co/cloud/signup

rabbitmqDistributed messaging bus, http

gitlab

Source code management, https://

www

rabbitmq

rstudioIDE for R

glassfish

Java application server, https://

www

rstudio

com

scidriveData hosting/sharing

kallithea	Source code management, https://kallithea-scm.org/
mediagoblin	Media publishing, http://

scidrive

mediagoblin.org/

solr

mediawiki

Search

Wiki,

http

lucene

apache

solr

tworavens

moinmoin

Statistical tools

Wiki,

http

datascience.iq.harvard.edu/about-tworavens

moinmo.in/
mongodb	NoSQL database, https://www.mongodb.org/

weka

mysql

Machine learning

Database,

http

cs.waikato.ac.nz/ml/weka

mysql.com/
nginx	Web server, http://nginx.org/en/
opencv	Computer vision tools, http://opencv.org/

xwiki

postgres

Wiki

Database, http://www.

xwiki

postgresql.org/

xwiki/bin/view/Main/WebHome


rabbitmq	Distributed messaging bus, http://www.rabbitmq.com/

yt

solr

Data visualization

Search, http://

yt-project

lucene.apache.org/solr/

zenodoData & software publication

xwiki

zenodo

www.xwiki.org/xwiki/bin/view/Main/WebHome

Previous version can be found here.