https://github.com/nds-org/nds-labs/tree/v2
packaged=Docker container is available
Research Data Management Tools
| Name | Description | Packaged | Notes |
|---|---|---|---|
| browndog | Data transformation service, http://browndog.ncsa.illinois.edu/ | ||
| ckan | Data portal, http://ckan.org/ | ||
| clowder | Data hosting/sharing, https://clowder.ncsa.illinois.edu/ | ||
| cyverse | Data storage/analysis, http://www.iplantcollaborative.org/ | ||
| dataone | ArchiveRepository, https://www.dataone.org/ | ||
| dataverse | ArchiveRepository, http://dataverse.org/ | ||
| dspace | ArchiveRepository, http://www.dspace.org/ | ||
| fedora | Repository, http://fedorarepository.org/ | ||
| galaxy | https://galaxyproject.org/ | ||
| girder | Data hosting/sharing, http://girder.readthedocs.org/en/latest/index.html | ||
| globus | Data sharing, https://www.globus.org/ | ||
| hubzero | Tool sharing, https://hubzero.org/ | ||
| irods | Archive, http://irods.org/ | ||
| omeka | |||
| owncloud | Cloud storage, https://owncloud.org/ | ||
| scidrive | Data hosting/sharing, http://scidrive.org/ | ||
| solr | Search, http://lucene.apache.org/solr/ | ||
| tworavens | Statistical tools, http://datascience.iq.harvard.edu/about-tworavens | ||
| zenodo | Data & software publication, http://zenodo.org/ |
...
Software Development Environments
| Name | Description | Packaged | Notes |
|---|---|---|---|
| eclipse | https://eclipse.org/ | ||
| eclipse che | http://www.eclipse.org/che/ | ||
| idea | https://www.jetbrains.com/idea/ | ||
| pycharms | https://www.jetbrains.com/pycharm/ | ||
| vscode | https://code.visualstudio.com/ |
...
Data analysis and visualization
| Name | Description | Packaged | Notes |
|---|---|---|---|
| galaxy | Data intensive research platform, https://galaxyproject.org/ | ||
| jupyter | Electronic notebook, http://jupyter.org/ | ||
| rstudio | IDE for R, https://www.rstudio.com/ | ||
| weka | Machine learning, http://www.cs.waikato.ac.nz/ml/weka/ | ||
| yt | Data visualization, http://yt-project.org/ |
Other services
| Name | Description | Packaged |
|---|---|---|
| apache | Web server, https://httpd.apache.org/ | |
| elasticsearch | Text indexing, https://www.elastic.co/cloud/signup | |
| gitlab | Source code management, https://about.gitlab.com/ | |
| glassfish | Java application server, https://glassfish.java.net/ | |
| kallithea | Source code management, https://kallithea-scm.org/ | |
| mediagoblin | Media publishing, http://mediagoblin.org/ | |
| mediawiki | Wiki, https://www.mediawiki.org/wiki/MediaWiki | |
| moinmoin | Wiki, https://moinmo.in/ | |
| mongodb | NoSQL database, https://www.mongodb.org/ | |
| mysql | Database, https://www.mysql.com/ | |
| nginx | Web server, http://nginx.org/en/ | |
| opencv | Computer vision tools, http://opencv.org/ | |
| postgres | Database, http://www.postgresql.org/ | |
| rabbitmq | Distributed messaging bus, http://www.rabbitmq.com/ | |
| solr | Search, http://lucene.apache.org/solr/ | |
| xwiki | Wiki, http://www.xwiki.org/xwiki/bin/view/Main/WebHome |
...