https://github.com/nds-org/nds-labs/tree/v2
packaged=Docker container is available
Research Data Management Tools
Name | DescriptionPackaged | In Labs Workbench?
| Notes |
---|
browndog | Data transformation service, http://browndog.ncsa.illinois.edu/ | | |
ckan | Data portal, http://ckan.org/ | | |
clowder | Data hosting/sharing, https://clowder.ncsa.illinois.edu/ | | | cyverse | Data storage/analysis, http://www.iplantcollaborative.org/ | | |
dataone | Repository, https://www.dataone.org/ | | |
dataverse | Repository, http://dataverse.org/ | | |
dspace | Repository, http://www.dspace.org/ | | |
fedora | Repository, http://fedorarepository.org/ | | | galaxy | https://galaxyproject.org/ | | |
girder | Data hosting/sharing, http://girder.readthedocs.org/en/latest/index.html | | |
globus | Data sharing, https://www.globus.org/ | | |
hubzero | Tool sharing, https://hubzero.org/ | | |
irods | Federated Archive, http://irods.org/ | | |
omeka | | | | owncloud | Cloud storage Repository, https:// owncloudomeka.org/ | | | |
scidrive | Data hosting/sharing, http://scidrive.org/ | | |
solr | Search, http://lucene.apache.org/solr/ | | |
tworavens | Statistical tools, http://datascience.iq.harvard.edu/about-tworavens | | |
zenodo | Data & software publication, http://zenodo.org/ | | |
...
Data Analysis and Visualization
Name | Description | Packaged | Notes |
---|
eclipse | eclipse eclipse chejupyter | Electronic notebook, http:// |
www.eclipseche/ideajetbrains/ideapycharms | httpsjetbrains.com/pycharmvscode | httpscode.visualstudio.com
Data analysis and visualization
Software Development Environments
Name | Description | Packaged | Notes |
---|
galaxy | Data intensive research platform, galaxyprojectjupyterElectronic notebook, jupyterrstudioIDE for R, rstudioweka | Machine learning, http cs.waikato.ac.nz/ml/weka/yt | Data visualization, httpyt-project.org...
General Services
Name | Description | Packaged | Notes |
---|
apache | Web server, https://httpd.apache.org/ | | |
elasticsearch | Text indexing, https://www.elastic.co/cloud/signup | | |
gitlab | Source code management, https://about.gitlab.com/ | | |
glassfish | Java application server, https://glassfish.java.net/ | | |
kallithea | Source code management, https://kallithea-scm.org/ | | |
mediagoblin | Media publishing, http://mediagoblin.org/ | | |
mediawiki | Wiki, https://www.mediawiki.org/wiki/MediaWiki | | |
moinmoin | Wiki, https://moinmo.in/ | | |
mongodb | NoSQL database, https://www.mongodb.org/ | | |
mysql | Database, https://www.mysql.com/ | | |
nginx | Web server, http://nginx.org/en/
| | opencv | Computer vision |
owncloud | Cloud storage, https | tools, http:// | opencvowncloud.org/ | | |
postgres | Database, http://www.postgresql.org/ | | |
rabbitmq | Distributed messaging bus, http://www.rabbitmq.com/ | | |
solr | Search, http://lucene.apache.org/solr/ | | |
xwiki | Wiki, http://www.xwiki.org/xwiki/bin/view/Main/WebHome | | |
Previous version can be found here.