Research Data Management Tools
| Name | Description | In Labs Workbench? | Notes |
|---|---|---|---|
| browndog | Data transformation service, http://browndog.ncsa.illinois.edu/ | ||
| ckan | Data portal, http://ckan.org/ | ||
| clowder | Data hosting/sharing, https://clowder.ncsa.illinois.edu/ | ||
| dataone | Repository, https://www.dataone.org/ | ||
| dataverse | Repository, http://dataverse.org/ | ||
| dspace | Repository, http://www.dspace.org/ | ||
| fedora | Repository, http://fedorarepository.org/ | ||
| girder | Data hosting/sharing, http://girder.readthedocs.org/en/latest/index.html | ||
| globus | Data transfer/publishing, https://www.globus.org/ | ||
| hubzero | Tool sharing, https://hubzero.org/ | ||
| irods | Federated Archive, http://irods.org/ | ||
| omeka | Repository, https://omeka.org/ | ||
| scidrive | Data hosting/sharing, http://scidrive.org/ | ||
| zenodo | Data & software publication, http://zenodo.org/ |
Data Analysis and Visualization
| Name | Description | In Labs Workbench? | Notes |
|---|---|---|---|
| cyverse | Data storage/analysis, http://www.iplantcollaborative.org/ | ||
| galaxy | Data intensive research platform, https://galaxyproject.org/ | ||
| jupyter | Electronic notebook, http://jupyter.org/ | ||
| rstudio | IDE for R, https://www.rstudio.com/ | ||
| tworavens | Statistical tools, http://datascience.iq.harvard.edu/about-tworavens | ||
| weka | Machine learning, http://www.cs.waikato.ac.nz/ml/weka/ | ||
| yt | Data visualization, http://yt-project.org/ |
Software Development Environments
| Name | Description | In Labs Workbench? | Notes |
|---|---|---|---|
| cloud9 | https://github.com/c9 | License? | |
| eclipse | https://eclipse.org/ | ||
| eclipse che | http://www.eclipse.org/che/ | ||
| idea | https://www.jetbrains.com/idea/ | ||
| pycharms | https://www.jetbrains.com/pycharm/ | ||
| vscode | https://code.visualstudio.com/ |
General Services
| Name | Description | In Labs Workbench? | Notes |
|---|---|---|---|
| apache | Web server, https://httpd.apache.org/ | ||
| elasticsearch | Text indexing, https://www.elastic.co/cloud/signup | ||
| gitlab | Source code management, https://about.gitlab.com/ | ||
| glassfish | Java application server, https://glassfish.java.net/ | ||
| kallithea | Source code management, https://kallithea-scm.org/ | ||
| mediagoblin | Media publishing, http://mediagoblin.org/ | ||
| mediawiki | Wiki, https://www.mediawiki.org/wiki/MediaWiki | ||
| moinmoin | Wiki, https://moinmo.in/ | ||
| mongodb | NoSQL database, https://www.mongodb.org/ | ||
| mysql | Database, https://www.mysql.com/ | ||
| nginx | Web server, http://nginx.org/en/ | ||
| owncloud | Cloud storage, https://owncloud.org/ | ||
| postgres | Database, http://www.postgresql.org/ | ||
| rabbitmq | Distributed messaging bus, http://www.rabbitmq.com/ | ||
| solr | Search, http://lucene.apache.org/solr/ | ||
| xwiki | Wiki, http://www.xwiki.org/xwiki/bin/view/Main/WebHome |
Previous version can be found here.
This page is for both current and potential future services.
For additional technical details on implemented services, see:
https://bitbucket.org/nds-org/nds-labs/src/68ba7f28b6b2c3569247fb76bf88f6791447a850/README
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Used By
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busybox
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Busybox provides several stripped-down Unix tools in a single executable file. It is lightweight and portable and is specifically created for embedded operating systems with very limited resources. For instance, you can perform most linux commands on Android with Buysbox instead of installing all required files.
busybox is docker's core image. To get it type: docker pull busybox
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Curldrop is a simple (less than 100 LOC) web application that allows you to upload files straight from your Terminal with curl.
curldrop can be found here: https://github.com/xarthisius/curldrop
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Development Environment for yt, it's docker image containing everything that's required for yt to run.
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The front end to enable browse and modify the Docker registry in the web-browser.
docker-registry-frontend, see first line of service file
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Docker registry is used to push Docker images for storage and sharing.
docker-registry: another integral part of docker:
docker pull docker/registry (https://github.com/docker/docker-registry)
We should probably use v2 instead (https://docs.docker.com/registry/deploying/)
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Not working
DELETE ME
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Hipache is a distributed proxy designed to route high volumes of http and websocket traffic to unusually large numbers of virtual hosts, in a highly dynamic topology where backends are added and removed several times per second.
Hipache - was a dead end, should be just removed
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Can not be built
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fuse to irods
(docker image only)
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A simple wrapper around node-http-proxy that adds a REST API for updating the routing table.
proxy is specifically 'configurable-http-proxy' https://github.com/xarthisius/configurable-http-proxy
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Matt/Venkat
OS object store
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