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Research Data Management Tools

NameDescriptionIn Labs Workbench?
Notes
browndogData transformation service, http

...

...

browndog.ncsa.illinois.edu/
  •   
 
ckanData portal, http://ckan.org/
  •   
 
clowderData hosting/sharing, https://clowder.ncsa.illinois.edu/
  •   
 
dataoneRepository

...

NameDescriptionStatusapacheWeb server
, https://
httpd.apache
www.dataone.org/
  •   
 
dataverseRepository, http://dataverse.org/
  •   
browndogData transformation service
 
dspaceRepository, http://
browndog
www.
ncsa.illinois.edu/
  •   
clowder
dspace.org/
  •   
 
fedoraRepository, http://fedorarepository.org/
  •   
 
girderData hosting/sharing, http://girder.readthedocs.org/en/latest/index.html
  •   
 
globusData transfer/publishing, https://
clowder.ncsa.illinois.edu/
www.globus.org/
  •   
 
hubzeroTool sharing, https://hubzero.org/
  •   
 
irodsFederated Archive, http://irods.org/
  •   
 
omeka

Repository, https://omeka.org/

  •   
 
scidriveData hosting/sharing, http://scidrive.org/
  •   
 
zenodoData & software publication, http://zenodo.org/
  •    
 

Data Analysis and Visualization

NameDescriptionIn Labs Workbench?Notes
  •   
cyverseData storage/analysis, http://www.iplantcollaborative.org/
  •   
 
dataoneArchive
galaxyData intensive research platform, https://
www.dataone
galaxyproject.org/
  •   
 
dataverse
jupyter
Archive
Electronic notebook, http://
dataverse
jupyter.org/
  •   
 
dspace
rstudio
Archive
IDE for R,
http
https://www.
dspace
rstudio.
org
com/
  •   
 
eclipse
tworavens
IDE
Statistical tools,
https
http://
eclipse.org/
datascience.iq.harvard.edu/about-tworavens
  •   
elasticsearchText indexing,
 
wekaMachine learning, http
https
://www.
elastic.co/cloud/signup
cs.waikato.ac.nz/ml/weka/
  •   
girderData hosting/sharing,
 
ytData visualization, http://yt-project.org/
  •   
 

Software Development Environments

NameDescriptionIn Labs Workbench?Notes
cloud9https://github.com/c9
  •   
License?
eclipsehttps://eclipse.org/
  •   
 
eclipse chehttp://
girder
www.
readthedocs
eclipse.org
/en/latest/index.html
  •   
gitlabSource code management,
/che/
  •   
 
ideahttps://www.jetbrains.com/idea/
  •   
 
pycharmshttps://
about
www.
gitlab
jetbrains.com/pycharm/
  •   
     
 
glassfish
vscode
Java application server,
https://
glassfish
code.
java
visualstudio.
net
com/
  •   
 
globus

General Services

NameDescriptionIn Labs Workbench?Notes
apacheWeb server
Data sharing
, https://
www
httpd.
globus
apache.org/
  •   
hubzeroTool sharing
 
elasticsearchText indexing, https://
hubzero.org/
  •   
irodsArchive, http://irods.org/
  •   
jupyterElectronic notebook, http://jupyter.org/ 
www.elastic.co/cloud/signup
  •   
 
gitlabSource code management, https://about.gitlab.com/
  •   
 
glassfishJava application server, https://glassfish.java.net/
  •   
 
kallitheaSource code management, https://kallithea-scm.org/ 
  •   
 
mediagoblinMedia publishing, http://mediagoblin.org/
  •   
 
mediawikiWiki, https://www.mediawiki.org/wiki/MediaWiki
  •   
 
moinmoinWiki, https://moinmo.in/
  •   
 
mongodbNoSQL database, https://www.mongodb.org/
  •   
 
mysqlDatabase, https://www.mysql.com/
  •   
 
nginxWeb server, http://nginx.org/en/
  •   
opencv
Computer vision tools, http://opencv.org/
 
owncloudCloud storage, https://owncloud.org/
  •   
 
postgresDatabase, http://www.postgresql.org/
  •   
 
rabbitmqDistributed messaging bus, http://www.rabbitmq.com/
  •   
rstudioIDE for R, https://www.rstudio.com/
  •   
scidrive 
Data hosting/sharing, http://scidrive.org/
 
solrSearch, http://lucene.apache.org/solr/
  •  
tworavensStatistical tools, http://datascience.iq.harvard.edu/about-tworavens
  •  
 
weka
xwiki
Machine learning
  •   
ytData visualization, http://yt-project.org/
  •   
zenodoData & software publication, http://zenodo.org/ 
Wiki, http://www.
cs.waikato.ac.nz/ml/weka/
xwiki.org/xwiki/bin/view/Main/WebHome
  •   
 

Previous version can be found here.