Research Data Management Tools
Name | Description | In Labs Workbench? | Notes |
---|---|---|---|
browndog | Data transformation service, http |
...
...
browndog.ncsa.illinois.edu/ | |||
ckan | Data portal, http://ckan.org/ | ||
clowder | Data hosting/sharing, https://clowder.ncsa.illinois.edu/ | ||
dataone | Repository, https://www.dataone.org/ | ||
dataverse | Repository, http://dataverse.org/ | ||
dspace | Repository, http://www.dspace.org/ | ||
fedora | Repository, http://fedorarepository.org/ | ||
girder | Data hosting/sharing, http://girder.readthedocs.org/en/latest/index.html | ||
globus | Data transfer/publishing, https://www.globus.org/ | ||
hubzero | Tool sharing, https://hubzero.org/ | ||
irods | Federated Archive, http://irods.org/ | ||
omeka | Repository, https://omeka.org/ | ||
scidrive | Data hosting/sharing, http://scidrive.org/ | ||
zenodo | Data & software publication, http://zenodo.org/ |
Data Analysis and Visualization
Name | Description | In Labs Workbench? | Notes |
---|---|---|---|
cyverse | Data storage/analysis, http://www.iplantcollaborative.org/ | ||
galaxy | Data intensive research platform, https://galaxyproject.org/ | ||
jupyter | Electronic notebook, http://jupyter.org/ | ||
rstudio | IDE for R, https://www.rstudio.com/ | ||
tworavens | Statistical tools, http://datascience.iq.harvard.edu/about-tworavens | ||
weka | Machine learning, http://www.cs.waikato.ac.nz/ml/weka/ | ||
yt | Data visualization, http://yt-project.org/ |
Software Development Environments
Name | Description | In Labs Workbench? | Notes |
---|---|---|---|
cloud9 | https://github.com/c9 | License? | |
eclipse | https://eclipse.org/ | ||
eclipse che | http://www.eclipse.org/che/ | ||
idea | https://www.jetbrains.com/idea/ | ||
pycharms | https://www.jetbrains.com/pycharm/ | ||
vscode | https://code.visualstudio.com/ |
General Services
Name | Description | In Labs Workbench? | Notes |
---|---|---|---|
apache | Web server, https://httpd.apache.org/ | ||
elasticsearch | Text indexing, https://www.elastic.co/cloud/signup | ||
gitlab | Source code management, https://about.gitlab.com/ | ||
glassfish | Java application server, https://glassfish.java.net/ | ||
kallithea | Source code management, https://kallithea-scm.org/ | ||
mediagoblin | Media publishing, http://mediagoblin.org/ | ||
mediawiki | Wiki, https://www.mediawiki.org/wiki/MediaWiki | ||
moinmoin | Wiki, https://moinmo.in/ | ||
mongodb | NoSQL database, https://www.mongodb.org/ | ||
mysql | Database, https://www.mysql.com/ | ||
nginx | Web server, http://nginx.org/en/ | ||
owncloud | Cloud storage, https://owncloud.org/ | ||
postgres | Database, http://www.postgresql.org/ | ||
rabbitmq | Distributed messaging bus, http://www.rabbitmq.com/ | ||
solr | Search, http://lucene.apache.org/solr/ | ||
xwiki | Wiki, http://www.xwiki.org/xwiki/bin/view/Main/WebHome |
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busybox
Busybox provides several stripped-down Unix tools in a single executable file. It is lightweight and portable and is specifically created for embedded operating systems with very limited resources. For instance, you can perform most linux commands on Android with Buysbox instead of installing all required files.
busybox is docker's core image. To get it type: docker pull busybox
Curldrop is a simple (less than 100 LOC) web application that allows you to upload files straight from your Terminal with curl.
curldrop can be found here: https://github.com/xarthisius/curldrop
Development Environment for yt, it's docker image containing everything that's required for yt to run.
The front end to enable browse and modify the Docker registry in the web-browser.
docker-registry-frontend, see first line of service file
Docker registry is used to push Docker images for storage and sharing.
docker-registry: another integral part of docker:
docker pull docker/registry (https://github.com/docker/docker-registry)
We should probably use v2 instead (https://docs.docker.com/registry/deploying/)
fuse to irods
(docker image only)
A simple wrapper around node-http-proxy that adds a REST API for updating the routing table.
proxy is specifically 'configurable-http-proxy' https://github.com/xarthisius/configurable-http-proxy
Matt/Venkat
OS object store
Previous version can be found here.