Who | Planned - Monday | Accomplished - Friday |
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| INCROE - Science code: wrap up Fuyu's code; pass 2nd round edits to Xian
- Pyincore: add data service test and fix pyincore according to failed cases
- Semantic: meet with Omar to start implementing
- Other tasks TBD
SMM - faculty trolling project: prettify the frontend and add UI components
- meetings
- Clowder related tasks (if have time)
| INCROE - Science code: wrap up Fuyu's code; pass 2nd round edits to Xian
- Pyincore: add data service test and fix pyincore according to failed cases
- Fragility browser on jupyterlab
SMM - faculty trolling project: prettify the frontend and add UI components
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| - Cover Crop
- Project meeting/web design review
- Update covercrop VM with new genotype for Rye
- Code review
- FarmDoc
- Document migration steps for moving covercrop postgres/geoserver to fd-geoserver
- IN-Core
- Continue working on moving building damage analyses to pyincore
- Work on utility to create result dataset
- Code review
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Gowtham Naraharisetty | INCORE - Implement PUT test cases for data service
- Start moving Water Network Analysis code from v1 to python
Farm doc - Setup local dev environment. Run Soil Converter locally
- Migrate postgres tables to the new farmdoc VM
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| | |
| | Vacation Mon- Tue, Sick Wed - Fri | Vacation Mon- Tue, Sick Wed - Fri |
| - KnowEng
- Various changes to imputation function in Data_Cleanup_Pipeline
- Allowing replace NA value with customized value when write to file
- Testing for output reproducebility for samples_clustering_pipeline and general_clustering_pipeline
- Add intersection check for Feature_Prioritization_Pipeline & refactor the common code between Gene_Prioritization_Pipeline and Feature_Prioritization_Pipeline
- Update Dockerfile in all repositories to sync on latest base_image and maintainer list
- Build docker image for data_cleanup_pipeline and signature_analysis_pipeline
- Investigate issue with input file cannot be correctly read by pandas
- In-Core
| - KnowEng
- Finished several changes to imputation function in Data_Cleanup_Pipeline
- Removed impute_na from Geneset_Characterization_Pipeline
- Added impute_na to Gene_Prioritization_Pipeline and Feature_Prioritization_Pipeline
- Added default option of imputation to be reject
- Added new tests
- Added option to allow replacing NA value with any customized characters.
- Tested samples_clustering_pipeline and general_clustering_pipeline for reproducebility issue and reported findings.
- Added intersection check for Feature_Prioritization_Pipeline & refactor the common code between Gene_Prioritization_Pipeline and Feature_Prioritization_Pipeline
- Update Dockerfile in all repositories to sync on latest base_image and maintainer lists
- Built docker image for data_cleanup_pipeline and signature_analysis_pipeline
- Investigated the issue that input data was altered without any changes and found that duplicate columns was causing this. Need more investigation.
- In-Core
- Reviewed new building_damage_analysis.py
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| - CSSI proposal
- Clowder documentation
- Clowder 1.4 release and PR reviews
- Syngenta extractors
- Geodashboard PR reviews
- BD PR rewiews
- Vacation Friday
| - CSSI proposal
- Clowder documentation
- Clowder 1.4 release and PR reviews
- BD PR rewiews
- Vacation Friday
- Created Cyprus Clowder instance
- Created IMLCZO parsers VM
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| - gltg
- vbd
- parsing mosquito data
- running model
| |
| - laser 3d format conversion
- pipeline health monitoring
| |
| - MDF
- continue read the docs for the Sphinx
- NDS Workbench, run Forge examples
- script cron job discuss with Chad
- script for FF pipeline
- Farmdoc
- FD-10 - finishIn Progress
- FD-11 - convert arcCoPay In Progress
- setup VM for the presentation
| - MDF
- not done
- yes
- e-mail to Chad, discussed, involve ben
- no big progress
- Farmdoc
- e-mail to Amanda about resources, Friday meeting
- 5 min presentation
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| - NDS / TERRA
- Keep trying to scale up the TERRA Workbench
- Maintenance where needed
- KnowEnG
- Last week on the project
- Kubernetes Demo on Wednesday
- NIH Demo on Friday
- Crops in Silico
- Continue collecting feedback and iterating until satisfied
| - NDS / TERRA
- Keep Failed attempts trying to scale up the TERRA Workbench
- Maintenance where neededMinor Workbench maintenance
- KnowEnG
- NIH Demo cancelled due to scheduling conflicts
- Wrap up final bits of Kubernetes for their stuff
- Crops in Silico
- Continue collecting feedback and iterating until satisfied
|
| - GLTG
Jira |
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server | JIRA |
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columns | key,summary,type,created,updated,due,assignee,reporter,priority,status,resolution |
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serverId | b14d4ad9-eb00-3a94-88ac-a843fb6fa1ca |
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key | GLGVO-426 |
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- IMLCZO
Jira |
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server | JIRA |
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columns | key,summary,type,created,updated,due,assignee,reporter,priority,status,resolution |
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serverId | b14d4ad9-eb00-3a94-88ac-a843fb6fa1ca |
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key | IMLCZO-225 |
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|
- Re-run Parsers for Flux Tower and Allerton non-Decagon
| - GLTG
Jira |
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showSummary | false |
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server | JIRA |
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columns | key,summary,type,created,updated,due,assignee,reporter,priority,status,resolution |
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serverId | b14d4ad9-eb00-3a94-88ac-a843fb6fa1ca |
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key | GEOD-1076 |
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|
Jira |
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showSummary | false |
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server | JIRA |
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columns | key,summary,type,created,updated,due,assignee,reporter,priority,status,resolution |
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serverId | b14d4ad9-eb00-3a94-88ac-a843fb6fa1ca |
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key | GLGVO-422 |
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|
Jira |
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showSummary | false |
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server | JIRA |
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columns | key,summary,type,created,updated,due,assignee,reporter,priority,status,resolution |
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serverId | b14d4ad9-eb00-3a94-88ac-a843fb6fa1ca |
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key | GLGVO-426 |
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|
- IMLCZO
- Re-ran Parsers for Flux Tower and Allerton non-Decagon
Jira |
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showSummary | false |
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server | JIRA |
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columns | key,summary,type,created,updated,due,assignee,reporter,priority,status,resolution |
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serverId | b14d4ad9-eb00-3a94-88ac-a843fb6fa1ca |
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key | IMLCZO-225 |
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|
Jira |
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showSummary | false |
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server | JIRA |
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columns | key,summary,type,created,updated,due,assignee,reporter,priority,status,resolution |
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serverId | b14d4ad9-eb00-3a94-88ac-a843fb6fa1ca |
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key | IMLCZO-226 |
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| | |
| - Industry - Pix4D Extractor (W.I.P.)
- k8s dev setup/test for KnowEnG (W.I.P.)
| - Industry - Pix4D Extractor (W.I.P.)
- k8s dev setup/test for KnowEnG (W.I.P.)
|
| - LSST
- operations requirement gathering
- parsl
- PEcAn
- htcondor meeting
- create RC VM
- Industry
- check on progress of new hardware
- extractors per space
- TERRA
- NCSA/ISDA
| |
| - BD
- CCROP
- Tool to generate experiment file from template based on user input
- Other tasks
- JUDEL
- Apply Tesseract for OCR and newspaper article segmentation
| - BD
- CCROP
- Completed development for tool to generate experiment file from template based on user input
- JUDEL
- Working on applying Tesseract for OCR and newspaper article segmentation.
|
| - Even tho I read a lot of email while I was out - I still have email to catch up on
- Sprint Updates
- Brown Dog Qtr 1 2018 report - kickoff
- Get back in a groove and catch up on everything else
- new tablet?
| |
| | - BD
- upgrade to pyclowder2 for meangrey
- check the silhouette for clusterman – failed to get an answer
- fix pecan shiny
- GLM
- ingest USGS 04024000 on dev.
- add helper text for USGS quality code
- CC
- new UI
- initial implement for user session service.
|
| - Finish pycsw extractor by adding geotiff function
- Update docker for pyincore/opensees incore jupyterhub docker
- Update kubernetes with pyincore jupyterlab
- Prepare the COE demo
| - Finished pycsw extractor and tested it with docker and clowder
- Updated docker for pyincore, opensees, and other jupyterlab extension
- Updated kubernetes with new jupyter lab
- Tested web mapping on the jupyterlab
|