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changes.mady.by.user Sara Lambert

Saved on Feb 25, 2016

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New Version Current

changes.mady.by.user Kenton McHenry

Saved on Aug 01, 2016

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Research Data Management Tools

Name	Description	In Labs Workbench?

Packaged

Notes

apacheWeb server,

browndog

Data transformation service, http

https

httpd

apache

org

browndog

ckan

Data

transformation service

portal, http://

browndog.ncsa.illinois.edu

ckan.org/
clowder	Data hosting/sharing, https://clowder.ncsa.illinois.edu/

cyverseData storage/analysis, http://www.iplantcollaborative.org/

dataone

Archive

Repository, https://www.dataone.org/
dataverse

Archive

Repository, http://dataverse.org/
dspace

Archive

Repository, http://www.dspace.org/

eclipse

fedora

IDE

Repository,

https

eclipse

fedorarepository.org/

elasticsearchText indexing, https://www.elastic.co/cloud/signup


girder	Data hosting/sharing, http://girder.readthedocs.org/en/latest/index.html

gitlabSource code management

globus

Data transfer/publishing, https://

about

gitlab

com

glassfishJava application server,

hubzero	Tool sharing, https://hubzero.org/
irods	Federated Archive, http

https

glassfish.java.net/

irods.org/
omeka	Repository, https://omeka.org/
scidrive	Data hosting/sharing, http://scidrive.org/
zenodo	Data & software publication, http://zenodo.org/

Data Analysis and Visualization

Name	Description	In Labs Workbench?	Notes
cyverse	Data storage/analysis, http://www.iplantcollaborative

globusData sharing, https://www.globus.org/

hubzeroTool sharing, https://hubzero

irodsArchive,

galaxy

Data intensive research platform, https

http

irods

galaxyproject.org/
jupyter	Electronic notebook, http://jupyter.org/

kallitheaSource code management, https://kallithea-scm.org/

mediagoblinMedia publishing


rstudio	IDE for R, https://www.rstudio.com/
tworavens	Statistical tools, http://datascience.iq.harvard.edu/about-tworavens
weka	Machine learning, http://www.cs.waikato.ac.nz/ml/weka/
yt	Data visualization, http://

mediagoblin

yt-project.org/

mediawikiWiki, https://www.mediawiki.org/wiki/MediaWiki

moinmoinWiki, https://moinmo.in/

mongodbNoSQL database,

Software Development Environments

Name	Description	In Labs Workbench?	Notes
cloud9	https://github.com/c9		License?
eclipse	https://eclipse.org/
eclipse che	http://www.eclipse.org/che/
idea	https://www.jetbrains.com/idea/
pycharms	https://www.

mongodb

org/

mysql

vscode

Database,

www

mysql

visualstudio.com/

General Services

Name	Description	In Labs Workbench?	Notes
apache

nginx

Web server,

http

nginx.org/en

httpd.apache.org/
elasticsearch	Text indexing, https://www.elastic.co/cloud/signup
gitlab	Source code management, https://about.gitlab.com/

opencvComputer vision tools,


glassfish	Java application server, https

http

opencv

glassfish.java.

org

owncloudCloud storage


kallithea	Source code management, https://

owncloud

kallithea-scm.org/

postgres

mediagoblin

Database

Media publishing, http://mediagoblin.org/
mediawiki	Wiki, https://www.

postgresql

mediawiki.org/wiki/MediaWiki
moinmoin	Wiki, https://moinmo.in/

rabbitmqDistributed messaging bus, http

mongodb

NoSQL database, https://www.

rabbitmq

com

rstudioIDE for R


mysql	Database, https://www.

rstudio

scidriveData hosting/sharing

nginx

Web server, http://

scidrive

solrSearch, http


owncloud	Cloud storage, https://

lucene.apache

solr/

tworavens

postgres

Statistical tools

Database, http://

datascience

iq

harvard.edu/about-tworavens

wekaMachine learning

org/
rabbitmq	Distributed messaging bus, http://www.

cs.waikato.ac.nz/ml/weka

yt

solr

Data visualization

Search, http://

yt-project

lucene.apache.org/solr/

zenodoData & software publication


xwiki	Wiki, http://

zenodo

www.xwiki.org/xwiki/bin/view/Main/WebHome

Previous version can be found here.