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Research Data Management Tools

Name	Description	In Labs Workbench?

Packaged

Notes

apacheWeb server,

browndog

Data transformation service, http

https

httpd

apache

org

browndog

ckan

Data

transformation service

portal, http://

browndog.ncsa.illinois.edu

ckan.org/
clowder	Data hosting/sharing, https://clowder.ncsa.illinois.edu/

cyverseData storage/analysis, http://www.iplantcollaborative.org/

dataone

Data Analysis and Visualization

Name	Description	In Labs Workbench?	Notes
cyverse	Data storage/analysis, http://www.iplantcollaborative.org/

irodsArchive,

galaxy

Data intensive research platform, https

http

://

irods

galaxyproject.org/
jupyter	Electronic notebook, http://jupyter.org/

kallitheaSource code management


rstudio	IDE for R, https://

kallithea-scm.org/

mediagoblinMedia publishing

www.rstudio.com/
tworavens	Statistical tools, http://

mediagoblin.org/

mediawikiWiki,

datascience.iq.harvard.edu/about-tworavens
weka	Machine learning, http

https

://www.

mediawiki.org/wiki/MediaWiki

moinmoinWiki,

cs.waikato.ac.nz/ml/weka/
yt	Data visualization, http://yt-project.org/

Software Development Environments

Name	Description	In Labs Workbench?	Notes
cloud9	https://

moinmo

github.

in

com/c9

License?

mongodb

eclipse

NoSQL database,

https://eclipse.org/
eclipse che	http

https

://www.

mongodb

eclipse.org/che/

mysql

idea

Database,

https://www.

mysql

jetbrains.com/idea/

nginxWeb server,

pycharms

http

nginx

org

en

opencvComputer vision tools,


vscode	https

http

://

opencv

code.visualstudio.

org

com/

General Services

Name	Description	In Labs Workbench?	Notes
apache	Web server

owncloudCloud storage

, https://

owncloud

httpd.apache.org/

postgresDatabase, http


elasticsearch	Text indexing, https://www.

postgresql

elastic.

org

co/cloud/signup

rabbitmqDistributed messaging bus, http

gitlab

Source code management, https://

www

about.

rabbitmq

gitlab.com/

rstudioIDE for R

glassfish

Java application server, https://

www

glassfish.

rstudio

java.

com

net/

scidriveData hosting/sharing


kallithea	Source code management, https://kallithea-scm.org/
mediagoblin	Media publishing, http://

scidrive

mediagoblin.org/

solr

mediawiki

Search

Wiki,

http

lucene

apache

solr

tworavens

moinmoin

Statistical tools

Wiki,

http

https://

datascience.iq.harvard.edu/about-tworavens

moinmo.in/
mongodb	NoSQL database, https://www.mongodb.org/

wekaMachine learning,


mysql	Database, https

http

://www.

cs.waikato.ac.nz/ml/weka

mysql.com/
nginx	Web server, http://nginx.org/en/
owncloud	Cloud storage, https://owncloud.org/
postgres	Database, http://www.postgresql.org/

xwikiWiki


rabbitmq	Distributed messaging bus, http://www.

xwiki

rabbitmq.com/

yt

solr

Data visualization

Search, http://

yt-project

lucene.apache.org/solr/

zenodoData & software publication


xwiki	Wiki, http://

zenodo

www.xwiki.org/xwiki/bin/view/Main/WebHome

Previous version can be found here.

hubzero.org/
irods	Federated Archive, http://irods.org/
omeka	Repository, https://omeka.org/

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Versions Compared

Old Version 34

New Version Current

Key

Research Data Management Tools

Data Analysis and Visualization

Software Development Environments

General Services


girder	Data hosting/sharing, http://girder.readthedocs.org/en/latest/index.html

scidrive.org/
zenodo	Data & software publication, http://zenodo.org/

Repository, https://www.dataone.org/
dataverse

Repository, http://dataverse.org/
dspace