https://github.com/nds-org/nds-labs/tree/v2
Research Data Management Tools
Name | DescriptionPackaged | In Labs Workbench?
| Notes |
---|
browndog | Data transformation service, http://browndog.ncsa.illinois.edu/ | | |
ckan | Data portal, http://ckan.org/ | | |
clowder | Data hosting/sharing, https://clowder.ncsa.illinois.edu/ | | |
dataone | Repository, https | cyverse | Data storage/analysis, http://www.iplantcollaborativedataone.org/ | | dataone |
dataverse | ArchiveRepository, | httpshttp:// | www.dataonedataverse.org/ | | |
dataversedspace | ArchiveRepository, http://dataversewww.dspace.org/ | | | dspace
fedora | ArchiveRepository, http:// | www.dspacefedorarepository.org/ | | |
girder | Data hosting/sharing, http://girder.readthedocs.org/en/latest/index.html | | |
globus | Data sharingtransfer/publishing, https://www.globus.org/ | | |
hubzero | Tool sharing, https://hubzero.org/ | | |
irods | Federated Archive, http://irods.org/ | | |
owncloudomeka | Cloud storage Repository, https:// owncloudomeka.org/ | | |
scidrive | Data hosting/sharing, http://scidrive.org/ | | | solr | Search
zenodo | Data & software publication, http:// | lucenezenodo. | apache.org | /solr/ | | | tworavens | Statistical tools |
Data Analysis and Visualization
Name | Description | In Labs Workbench? | Notes |
---|
cyverse | Data storage/analysis, http:// |
datascienceiqharvard.edu/about-tworavenszenodo & software publication, httpzenodo Name | Description | Packaged | Notes |
---|
eclipse |
Software Development Environments
eclipseorgeclipse chetworavens | Statistical tools, http:// |
wwweclipseorg/che/idea | httpsjetbrainscomideapycharms | httpswww.jetbrains.com/pycharm Software Development Environments
Name | Description | Packaged | Notes |
---|
jupyter | Electronic notebook,
Data analysis and visualization
jupyterrstudioIDE for R, rstudioweka | Machine learning, httpcs.waikato.ac.nz/ml/weka/yt | Data visualization, httpyt-project.org ...
General Services
PackagedIn Labs Workbench? | Notes |
---|
apache | Web server, https://httpd.apache.org/ | | |
elasticsearch | Text indexing, https://www.elastic.co/cloud/signup | | |
gitlab | Source code management, https://about.gitlab.com/ | | |
glassfish | Java application server, https://glassfish.java.net/ | | |
kallithea | Source code management, https://kallithea-scm.org/ | | |
mediagoblin | Media publishing, http://mediagoblin.org/ | | |
mediawiki | Wiki, https://www.mediawiki.org/wiki/MediaWiki | | |
moinmoin | Wiki, https://moinmo.in/ | | |
mongodb | NoSQL database, https://www.mongodb.org/ | | |
mysql | Database, https://www.mysql.com/ | | |
nginx | Web server, http://nginx.org/en/
| | |
opencv | Computer vision tools, owncloud | Cloud storage, https |
httpopencv Previous version can be found here.