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https://github.com/nds-org/nds-labs/tree/v2

packaged=Docker container is available

Research Data Management Tools

Data storage/analysis, http:/www.iplantcollaborative.org/Searchlucene.apachesolr/Statistical tools

Name	DescriptionPackaged	In Labs Workbench?	Notes
browndog	Data transformation service, http://browndog.ncsa.illinois.edu/
ckan	Data portal, http://ckan.org/
clowder	Data hosting/sharing, https://clowder.ncsa.illinois.edu/			cyverse	/
dataone	Repository, https://www.dataone.org/
dataverse	Repository, http://dataverse.org/
dspace	Repository, http://www.dspace.org/
fedora	Repository, http://fedorarepository.org/		galaxy	https://galaxyproject.org/
girder	Data hosting/sharing, http://girder.readthedocs.org/en/latest/index.html
globus	Data sharingtransfer/publishing, https://www.globus.org/
hubzero	Tool sharing, https://hubzero.org/
irods	Federated Archive, http://irods.org/
omeka				owncloud	Cloud storage Repository, https:// owncloud omeka.org/
scidrive	Data hosting/sharing, http://scidrive.org/			solr
zenodo	Data & software publication, http://	zenodo.org/				tworavens

Data Analysis and Visualization

Name	Description	In Labs Workbench?	Notes
cyverse	Data storage/analysis, http://

datascience

www.

iq

iplantcollaborative.

harvard.edu/about-tworavens

org/

zenodo

galaxy

Data

& software publication, http

intensive research platform, https://

zenodo

galaxyproject.org/

Software Development Environments

jupyter

Electronic notebook, http

NameDescriptionPackagedNoteseclipsehttps

://

eclipse

jupyter.org/

eclipse chehttp

rstudio

IDE for R, https://www.

eclipse

rstudio.

org/che

com/

ideahttps

tworavens

Statistical tools, http://

www

datascience.iq.

jetbrains

harvard.

com/idea/

edu/about-tworavens

pycharmshttps

weka	Machine learning, http://www.cs.waikato.

jetbrains

ac.

com

nz/ml/

pycharm

weka/

vscodehttps

yt	Data visualization, http://

code.visualstudio.com

yt-project.org/

...

Software Development Environments

Name	Description

PackagedNotesgalaxyData intensive research platform,

In Labs Workbench?	Notes
cloud9	https://github.com/c9		License?
eclipse	https://

galaxyproject

eclipse.org/

jupyter

eclipse che

Electronic notebook,

http://

jupyter

www.eclipse.org/che/

rstudio

idea

IDE for R,

https://www.

rstudio

jetbrains.com/idea/

wekaMachine learning,

pycharms

https

http

://www.

cs.waikato.ac.nz/ml/weka

jetbrains.com/pycharm/

ytData visualization, http


vscode	https://

yt-project.org

code.visualstudio.com/

...

General Services

Name	Description

Packaged

In Labs Workbench?	Notes
apache	Web server, https://httpd.apache.org/
elasticsearch	Text indexing, https://www.elastic.co/cloud/signup
gitlab	Source code management, https://about.gitlab.com/
glassfish	Java application server, https://glassfish.java.net/
kallithea	Source code management, https://kallithea-scm.org/
mediagoblin	Media publishing, http://mediagoblin.org/
mediawiki	Wiki, https://www.mediawiki.org/wiki/MediaWiki
moinmoin	Wiki, https://moinmo.in/
mongodb	NoSQL database, https://www.mongodb.org/
mysql	Database, https://www.mysql.com/
nginx	Web server, http://nginx.org/en/

opencvComputer vision tools,

owncloud

Cloud storage, https

http

://

opencv

owncloud.org/
postgres	Database, http://www.postgresql.org/
rabbitmq	Distributed messaging bus, http://www.rabbitmq.com/
solr	Search, http://lucene.apache.org/solr/
xwiki	Wiki, http://www.xwiki.org/xwiki/bin/view/Main/WebHome

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Key

Research Data Management Tools

Data Analysis and Visualization

Software Development Environments

Software Development Environments

General Services