A few assumptions are that you have a tool that extracts some kind of metadata from a file or dataset and that you have installed Python, Git, and Docker as well as any other specific software needed by your extractor (if any) on your computer.
1. Install pyClowder2
Install pyClowder2, which is a Python library that helps to easily communicate with Clowder - the backend services of Brown Dog which handles extractions. The advantage of using this library is that it manages all communications with Clowder and RabbitMQ (the distributed messaging bus) and the developer doesn't have to take care of such tasks. Needless to say, an extractor can also be written in native Python without the use of pyClowder2, but it would be more time consuming.
pip install git+https://opensource.ncsa.illinois.edu/stash/scm/cats/pyclowder.git
2. Get Your Code Together
We have developed a template extractor written in Python. It is a simple wordcount extractor that counts lines, words, and characters in a text file. Clone the template extractor and rename the directory to an appropriate name that reflects the purpose of your extractor.
git clone https://opensource.ncsa.illinois.edu/bitbucket/scm/bd/extractors-template.git
mv extractors-template/ <your_extractor_name>
Make changes to extractors.py (main program). Consider the process_file method as the main method of an extractor and accordingly it needs to contain the main logic. You can call other methods in your python code from this method after importing necessary modules into this file.
3. Edit the Configuration
Edit extractor configuration file config.py:
Change the rabbitmq queue name - in this case replace "wordCount" with an appropriate name for your extractor
- Change the messageType field to reflect the MIME type(s) of the file for which you are writing the extractor
- Update other fields like rabbitmqURL, rabbitmqExchange, sslVerify, to include include
- If your extractor needs other custom parameters, they need to be added to config.py
4. Edit extractor.info.json
This file contains metadata about the extractor in JSON-LD format. Update all relevant fields as needed.
5. Edit the Dockerfile
Update the Dockerfile to install your software dependencies, provide necessary instructions in Dockerfile using the RUN command. You will need to add a line in Dockerfile to switch to the root user (
USER root) for getting proper permissions. For e.g., to install ImageMagick package using apt-get, add the following commands to Dockerfile:
RUN apt-get update && apt-get install -y imagemagick
6. Test Docker
You can test your extractor as follows:
docker-compose up -d
docker build -t <your_extractor_name> .
docker run --rm -i -t --link <your_extractor_name_with_only_alphabets>_rabbitmq_1:rabbitmq <your_extractor_name>
You should see the following in the terminal. This means that the extractor is running and waiting for messages:
INFO : pyclowder.extractors - Waiting for messages. To exit press CTRL+C
In this section, we describe the creation of a converter using the image converter written using ImageMagick.