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NameDescriptionPackaged
apacheWeb server, https://httpd.apache.org/
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browndogData transformation service, http://browndog.ncsa.illinois.edu/
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clowderData hosting/sharing, https://clowder.ncsa.illinois.edu/
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cyverseData storage/analysis, http://www.iplantcollaborative.org/
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dataoneArchive, https://www.dataone.org/
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dataverseArchive, http://dataverse.org/
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dspaceArchive, http://www.dspace.org/
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eclipseIDE, https://eclipse.org/
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elasticsearchText indexing, https://www.elastic.co/cloud/signup
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girderData hosting/sharing, http://girder.readthedocs.org/en/latest/index.html
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gitlabSource code management, https://about.gitlab.com/
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glassfishJava application server, https://glassfish.java.net/
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globusData sharing, https://www.globus.org/
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hubzeroTool sharing, https://hubzero.org/
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irodsArchive, http://irods.org/
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jupyterElectronic notebook, http://jupyter.org/
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kallitheaSource code management, https://kallithea-scm.org/ 
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mediagoblinMedia publishing, http://mediagoblin.org/
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mediawikiWiki, https://www.mediawiki.org/wiki/MediaWiki
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moinmoinWiki, https://moinmo.in/
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mongodbNoSQL database, https://www.mongodb.org/
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mysqlDatabase, https://www.mysql.com/
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nginxWeb server, http://nginx.org/en/
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opencvComputer vision tools, http://opencv.org/
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owncloudCloud storage, https://owncloud.org/
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postgresDatabase, http://www.postgresql.org/
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rabbitmqDistributed messaging bus, http://www.rabbitmq.com/
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rstudioIDE for R, https://www.rstudio.com/
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scidriveData hosting/sharing, http://scidrive.org/
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solrSearch, http://lucene.apache.org/solr/
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tworavensStatistical tools, http://datascience.iq.harvard.edu/about-tworavens
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wekaMachine learning, http://www.cs.waikato.ac.nz/ml/weka/
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ytData visualization, http://yt-project.org/
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zenodoData & software publication, http://zenodo.org/
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