ID (Extractor Name from config file, same as queue name) | Programming Language | Software | OS | Can be Dockerized? | Assigned To | Repo | Author |
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| DEPLOYED |
|---|
| ncsa.image.ocr | Python | Tesseract | Linux | | Rui | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/ocr | |
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ncsa.cv.faces | Python | OpenCV | Linux | | Rui | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/opencv | Liana |
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ncsa.cv.eyes | Python | OpenCV | Linux | | Rui | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/opencv | Liana |
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ncsa.cv.closeups | Python | OpenCV | Linux | | Rui | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/opencv | Liana |
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ncsa.cv.profiles | Python | OpenCV | Linux | | Rui | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/opencv | Liana |
|---|
ncsa.cellprofiler.fluorescentcomet | Python | pymedici  | Windows | No | | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/cellprofiler | Liana |
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ncsa.cellprofiler.fly | Python | | Windows | No | | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/cellprofiler | Liana |
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ncsa.cellprofiler.human | Python | | Windows | No | | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/cellprofiler | Liana |
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ncsa.cellprofiler.silvercomet | Python | | Windows | No | | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/cellprofiler | Liana |
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ncsa.cellprofiler.speckle | Python | | Windows | No | | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/cellprofiler | Liana |
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ncsa.cellprofiler.trackobject | Python | | Windows | No | | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/cellprofiler | Liana |
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ncsa.cellprofiler.tumor | Python | | Windows | No | | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/cellprofiler | Liana |
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ncsa.cellprofiler.yeast | Python | | Windows | No | | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/cellprofiler | Liana |
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ncsa.image.sphog | Python | Matlab, mnist-sphog | Linux | | | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/handwritten/HandwrittenNumbers | |
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ncsa.image.caltech101 | | | | | | | |
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| ncsa.bisque.histogram (notes: disabled) | Python | | Linux | | | | |
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| ncsa.bisque.metadata (notes: disabled) | Python | | Linux | | | | |
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| census-section-segmentor | Java | | Linux | | | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/census | Liana, Inna |
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| ncsa.cv.river | Python | OpenCV (python), convert (from imagemagick), and Gdal | Linux | | | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/river | Liana |
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| ncsa.geo.shpExtractor | Python | gdal | Linux | | | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-geo/browse | Jong Lee |
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| ncsa.geo.tiffExtractor | Python | gdal | Linux | | | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-geo/browse | Jong Lee |
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| ncsa.image.geotiff | Python | GDAL, Cython, numpy,
pygeoprocessing | Linux | | Rui | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-geotiff/browse | Rui, Mostafa Elag |
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ncsa.image.ponddetect | Python | Matlab | Linux | | | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-maps/browse/feature_detection | Marcus, Ankit |
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| ncsa.image.humanpref | Python | Matlab | Linux | | | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-maps/browse/humanpref | Marcus, Ankit |
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ncsa.xml.greenindexroute, ncsa.csv.greenindexroute | Python | OpenCV | Linux | | | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-maps/browse/greenroute | Marcus |
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ncsa.image.knn_numerals | Python | OpenCV | Linux | | | | Marcus |
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ncsa.audio.speech2text | Java | CMU Sphinx, ffmpeg, sox | Linux | | | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-core/browse/audio/speech2text | Marcus |
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| ncsa.audio.preview | Python | | | | Inna | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-core/browse/audio/preview | |
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| ncsa.nlp.simplelanguage | Python | numpy | | | Inna | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-nlp/browse/SimpleLanguage | Liana |
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| ncsa.nlp.simplesummary | Python | Natural Language Toolkit (NLTK) for Python, NLTK Data or at least: nltk.corpus,nltk.stem.porter and nltk.tokenize.punkt. | | | | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-nlp/browse/SimpleSummary | Liana |
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| ncsa.nlp.SNLPSentiment | Java | Stanford CoreNLP tool, java, maven | | | | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-nlp/browse/SNLP/SNLPSentimentExtractor | Liana, Marcus(?) |
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| ncsa.nlp.wordtables | Python | requests, pika, win32com | | | | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-nlp/browse/WordTablesExtractor | Liana |
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| siegfried | Python | | | | | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-siegfried/browse | Gregory Jansen |
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| ncsa.versus.image | Java | Versus | Linux | | | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-versus/browse | Kenton, Smruti |
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| ncsa.image.preview (note: check if really deployed. there is an extractor in Hosted VMs list with a similar name.) | Python | | | | | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-core/browse/image/preview | Rob, Sandeep |
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| ncsa.pdf.preview (note: check if really deployed. there is an extractor in Hosted VMs list with a similar name.) | Python | | | | | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-core/browse/pdf/preview | Rob |
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| ncsa.video.preview (note: check if really deployed. there is an extractor in Hosted VMs list with a similar name.) | Python | | | | | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-core/browse/video/preview | Rob |
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| NOT DEPLOYED |
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| ncsa.image.digitpy | Python | opencv | | | | | | | | |
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| | | | | | | | |
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| https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/handwritten/SimpleDigitPython | |
| ncsa.cv.pdfimages | | pdfimages, from poppler-utils | | | | | | | | | NOT DEPLOYED | | | | | | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/poppler | |
|---|
| ncsa.imagecv.digitpycaltech101 | Python | opencv | Matlab and VLFeat | 64-bit Mac OS | | | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/handwritten/SimpleDigitPythonvlfeat | | ncsa.cv.pdfimages | | pdfimages, from poppler-utils | |
|---|
| dbpedia | Python | Natural Language Toolkit (NLTK) and rdflib. | | | | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cvdbpedia/browse/poppler | |
|---|
| digest | | ncsa.cv.caltech101 | Python | Matlab and VLFeat | 64-bit Mac OS | | | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cvdigest/browse/vlfeat | |
|---|
| dbpediancsa.hpc | Python | Natural Language Toolkit (NLTK) and rdflib. | | | Luigi Marini | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-dbpediahpc/browse | | |
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| LSVA | Java | digest | Python | | | | | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-digestlsva/browse | | Liana, Constantinos |
|---|
| LSVA integrated | | ncsa.hpc | Python | | | | | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-hpclsva-integrated/browse | |
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| LSVAncsa.movieslice | JavaPython | | | | | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-lsvamovieslice/browse | Sandeep | Liana, Constantinos | LSVA integrated |
|---|
| mri2mesh | Python | pymedici, subprocess, logging, os, numpy, shutil, zipfile | | | | | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-lsva-integratedmri/browse/mri2mesh | | ncsa.movieslice | Marcus |
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| msc-ChemCBCExtractor | Python | requests, pika, openpyxl, xlrd, pymongo | Linux | | | Python | | | | | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-movieslicemsc/browse/ChemCBCExtractor | SandeepYan |
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| mri2meshmsc-IsletExtractor | Python | pymedicirequests, subprocesspika, loggingopenpyxl, os, numpy, shutil, zipfilexlrd, pymongo | Linux | | | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-mrimsc/browse/mri2meshIsletExtractor | MarcusYan |
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| msc-ChemCBCExtractorMonitorExtractor | Python | requests, pika, openpyxl, xlrdxlrd, pymongo | Linux | | | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-msc/browse/ChemCBCExtractorMonitorExtractor | Yan |
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| ncsa.msc-IsletExtractor.dailymonitor | Python | requests, pika, openpyxl, xlrd, pymongo | Linux | Yan Zhao | not used | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-msc/browse/IsletExtractorOldMonitorExtractor | YanAshwini |
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| msc-MonitorExtractorPhenotypeExtractor | Python | requests, pika, openpyxl, xlrd, pymongo | Linux | | | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-msc/browse/MonitorExtractorPhenotypeExtractor | Yan |
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| ncsa.mscnlp.dailymonitorSNLP | Python | Java | Stanford CoreNLP tool, java, mavenrequests, pika, openpyxl, xlrd, pymongo | | | not used | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-mscnlp/browse/OldMonitorExtractorSNLP/SNLPExtractor | Ashwini | Liana |
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| ncsa.nlp.tikamsc-PhenotypeExtractor | Python | requests, pika, openpyxl, xlrd, pymongo | Linux Tika project page, pymedici | | Yan Zhao | | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-mscnlp/browse/PhenotypeExtractortika | Yan | Liana |
|---|
| person-detector | Python | MATLAB, FFMPEG, requests and pika | ncsa.nlp.SNLP | Java | Stanford CoreNLP tool, java, maven | | | | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-person-nlpdetector/browse/SNLP/SNLPExtractorpython | LianaSandeep |
|---|
| ncsa.nlp.tikaperson-tracker | Python | Tika project page, pymedicipython, MATLAB, FFMPEG requests and pika | | | Kenton McHenry | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-person-nlptracking/browse/tikapython | Liana | Sandeep |
|---|
| terra.plantcvperson-detector | Python MATLAB | , FFMPEG, requests and pika pika
requests
wheel | | | | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-person-detectorplantcv/browse/python | Sandeep | ncsa.person-tracker | Yan |
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| medici_PTM_thumbnails | Java | | Python | python, MATLAB, FFMPEG requests and pika | | | | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-person-trackingptm/browse/pythonPTMThumbnailExtractor | Sandeep | Constantinos |
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| medici_PTM_metadata | Java | | terra.plantcv | Python | pika
requests
wheel | | | | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-plantcvptm/browse | Yan | /PTMMetadataExtractor | Constantinos |
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Name not clear PtmMetadata(?) medici_PTM_thumbnails | Java | | | | | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-ptm/browse/PTMThumbnailExtractorPTMMetadata | Constantinos |
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| medici_PTMptm_metadatamaps | Java | | | | | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-ptm/browse/PTMMetadataExtractorPTMMapsExtractor | Constantinos |
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| medici_ptm_3d | Name not clear PtmMetadata(?) | Java | | | | | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-ptm/browse/PTMMetadataPTM3DExtractor | Constantinos |
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| medici_images_ptm_maps | Java | | | | | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-ptm/browse/PTMMapsExtractorImagesPTMExtractor | Constantinos | medici_ptm_3d | |
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extractors-rabbitmq (look like examples) | Java | | | | | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-ptmrabbitmq/browse/PTM3DExtractor | Constantinos | medici_images_ptm | |
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| Name not clear extractors-seabird/ | ScalaJava | | | | | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-ptmseabird/browse/ImagesPTMExtractor | Constantinos | Luigi |
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| medici_3d_x3d (one of extractors-3d) | Java | extractors-rabbitmq (look like examples) | | | | | | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-rabbitmq3d/browse/ObjJSONExtractor | | Constantinos |
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| medici_3d_obj_merger (one of extractors-3d) | Java | Name not clear extractors-seabird/ | Scala | | | | | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-seabird3d/browse/OBJMergerExtractor | LuigiConstantinos |
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| medici_3d_x3d oni (one of extractors-3d) | Java | | | | | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-3d/browse/ObjJSONExtractorOniExtractor | Constantinos |
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| medici_3dply_obj _merger (one of extractors-3d) | Java | | | | | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-3d/browse/OBJMergerExtractorPlyObjExtractor | Constantinos |
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| medici_3d_oni metadata (one of extractors-3d) | Java | | | | | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-3d/browse/OniExtractorThreeDMetadataExtractor | Constantinos |
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| medici_plyx3d_obj html (one of extractors-3d) | Java | | | | | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-3d/browse/PlyObjExtractorX3DhtmlExtractor | Constantinos | medici_3d_metadata (one of extractors-3d) | Java | | | |
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| ncsa.arcgis.landsat7mosaic | Python | ArcGIS | Windows | No | | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-3dbd-cz/browse/ThreeDMetadataExtractorndviextractor | Constantinos | medici_x3d_html (one of extractors-3d) | Smruti |
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| ncsa.arcgis.floodplain | Python | ArcGIS | Windows | No | Java | | | | | | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-3dbd-cz/browse/X3DhtmlExtractorterex_floodplain/config.py | Smruti |
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| medici_book | Java | | | | | Constantinos | ncsa.arcgis.landsat7mosaic | Python | ArcGIS | Windows | No | Smruti Padhy | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-bd-czbooks/browse/ndviextractorBookPreviewExtractor | Smruti | ncsa.arcgis.floodplain | Python | ArcGIS | Windows | No | Theerasit Issaranon |
|---|
| medici_image_pyramid | Java | | | | Smruti Padhy | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-bd-czbooks/browse/terex_floodplain/config.py | Smruti | ImagePreviewPyramidExtractor-shebook | Theerasit Issaranon |
|---|
| shebookmedici_book | Java | | | | | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-books/browse/ BookPreviewExtractor | Theerasit Issaranon | medici_image_pyramid | Java SheBookPreviewExtractor/src/BookPreviewExtractor | | | | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-books/browse /ImagePreviewPyramidExtractor-shebook/SheBookPreviewExtractor/src/bookpreviewextractor | Theerasit Issaranon |
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| shebooklsva-cedd | Java | | | | | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-books/browse/SheBookPreviewExtractor/src/BookPreviewExtractorcedd/browse | Constantinos |
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| ncsa.cinemetrics | Python | | | | | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-bookscinemetrics/browse/SheBookPreviewExtractor/src/bookpreviewextractor | Theerasit Issaranon | | Constantinos |
|---|
| ncsa.image.metadata | Python | lsva-cedd | Java | | | | | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-ceddcore/browse/image/metadata | Max. RobConstantinos |
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| ncsa.debod.cinemetricssegmentor | Python | | | | | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATSDEBOD/repos/extractors-cinemetricscellsegmentor/browse | Constantinos |
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| ncsa.image.metadatadmp | Python | | | | | https://opensource.ncsa.illinois.edu/bitbucket/projects/ CATSDEBOD/repos/extractors- coredebod/browse /image/metadata | Max. Rob | https://opensource.ncsa.illinois.edu/bitbucket/projects/DEBOD/repos/extractors-dmp/browse | |
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| ncsa.image.sphog.debodncsa.debod.segmentor | | | | | | https://opensource.ncsa.illinois.edu/bitbucket/projects/DEBOD/repos/extractors-cellsegmentorhandwrittendecimals/browse | |
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| dmp | | | | | | https://opensource.ncsa.illinois.edu/bitbucket/projects/DEBODIARP/repos/extractors-debod/browse https://opensource.ncsa.illinois.edu/bitbucket/projects/DEBOD/repos/extractors-dmp/browse | | image_fetcher/browse/extractors/remove_circle | Marcus |
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| ncsa.cv.meangreyncsa.image.sphog.debod | | | | | | https://opensource.ncsa.illinois.edu/bitbucket/projects/DEBODIARP/repos/image_fetcher/browse/extractors-handwrittendecimals/browsemean_grey | Marcus |
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