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Scientific

Tool

TypeDescriptionSoftwareRepositoriesContactSiegfriedExtractor

 

 

 

   
Use Case ToolTypeDescriptionSoftwareRepositoriesContact

 

 

 

Hydrology

Historical River Extractor (ncsa.cv.river)Extractor OpenCV (python), convert (from imagemagick), and Gdalhttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/riverLiana
ncsa.geo.shpExtractor Extractor gdalhttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-geo/browseJong Lee
ncsa.geo.tiffExtractorExtractor gdalhttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-geo/browseJong Lee
ncsa.image.geotiff  

GDAL, Cython, numpy,
pygeoprocessing

https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-geotiff/browseRui, Mostafa Elag
ncsa.arcgis.landsat7mosaic  ArcGIShttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-bd-cz/browse/ndviextractorSmruti
ncsa.arcgis.floodplain  ArcGIShttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-bd-cz/browse/terex_floodplain/config.pySmruti

Biology

terra.plantcv  

pika
requests
wheel

https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-plantcv/browseYan

 

 

 

 

 

Green Infrastructure

Stanford CoreNLP Sentiment (ncsa.nlp.SNLPSentiment)   Stanford CoreNLP tool, java, mavenhttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-nlp/browse/SNLP/SNLPSentimentExtractorLiana, Marcus(?)

Body of Water Detector (ncsa.image.ponddetect)

  Matlabhttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-maps/browse/feature_detectionMarcus, Ankit
Human Preference Score (ncsa.image.humanpref)  Matlabhttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-maps/browse/humanprefMarcus, Ankit

ncsa.xml.greenindexroute, ncsa.csv.greenindexroute

  OpenCVhttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-maps/browse/greenrouteMarcus
 census-section-segmentor Extractor  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/censusLiana, Inna

ncsa.image.knn_numerals

  OpenCV Marcus
ncsa.nlp.wordtables   requests, pika, win32comhttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-nlp/browse/WordTablesExtractorLiana
       

General

LSVA 
  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-
siegfried
lsva/browse
Gregory JansenDBPedia
Liana, Constantinos
LSVA integrated   
Natural Language Toolkit (NLTK) and rdflib.
https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-lsva-
dbpedia
integrated/browse
Luigi Marini
Tesseract (
Sandeep Puthanveetil Satheesan
ncsa.
image.ocr)Extractor
movieslice  
Tesseract
 https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-
cv
movieslice/browse
/ocr
 

OpenCV Faces (ncsa.cv.faces)

Extractor 
Sandeep
mri2mesh  pymedici, subprocess, logging, os, numpy, shutil, zipfile
OpenCV
https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-
cv
mri/browse/
opencv
mri2mesh
 

OpenCV Eyes (ncsa.cv.eyes)

Extractor 
Marcus
msc-ChemCBCExtractor  requests, pika, openpyxl, xlrd, pymongo
OpenCV
https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-
cv
msc/browse/
opencv
ChemCBCExtractor
Liana
Yan
msc-IsletExtractor  requests, pika, openpyxl, xlrd, pymongo

OpenCV Closeups (ncsa.cv.closeups)

Extractor OpenCV
https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-
cv
msc/browse/
opencv
IsletExtractor
Liana
Yan
msc-MonitorExtractor  requests, pika, openpyxl, xlrd, pymongo

OpenCV Profiles (ncsa.cv.profiles)

Extractor OpenCV
https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-
cv
msc/browse/
opencv
MonitorExtractor
Liana
Yan
VLFeat (
ncsa.
image
msc.
caltech101)
dailymonitor
Extractor
  
 
requests, pika, openpyxl, xlrd, pymongohttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-
cv
msc/browse/
extractors-vlfeatKenton McHenryCMU Sphinx (ncsa.audio.speech2text)
OldMonitorExtractorAshwini
msc-PhenotypeExtractor  
CMU Sphinx, ffmpeg, sox

requests, pika, openpyxl, xlrd, pymongo

https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-
core
msc/browse/
audio/speech2text
PhenotypeExtractor
Marcus
Yan
person-detector
Langid (ncsa.nlp.simplelanguage)
  
numpy
 MATLAB, FFMPEG, requests and pikahttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-person-
nlp
detector/browse/
SimpleLanguage
python
Liana
Sandeep
NLTK Summary (
ncsa.
nlp.simplesummary) nltk.corpus,nltk.stem.porter and nltk.tokenize.punkt.
person-tracker  

Natural Language Toolkit (NLTK) for Python, NLTK Data or at least:

python, MATLAB, FFMPEG requests and pikahttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-person-
nlp
tracking/browse/
SimpleSummary
python
Liana
Sandeep
lsva-cedd
Versus Color Distribution (ncsa.versus.image)
  
Versus
 https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-
versus
cedd/browse
Kenton, Smruti
Constantinos
ncsa.cinemetrics
NOT DEPLOYED   
  
LSVA
 
  
https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-
lsva
cinemetrics/browse
Liana,
Constantinos
LSVA integrated
      

General

lsva-integratedncsa.movieslicemovieslicepymedici, subprocess, logging, os, numpy, shutil, zipfile

Tool

TypeDescriptionSoftwareRepositoriesContact
SiegfriedExtractor  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-siegfried/browse
Sandeep Puthanveetil Satheesan
Gregory Jansen
DBPedia   Natural Language Toolkit (NLTK) and rdflib.https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-dbpedia/browseSandeepmri2mesh  
Luigi Marini
Tesseract (ncsa.image.ocr)Extractor Tesseracthttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-mricv/browse/mri2meshocrMarcus 

OpenCV Faces (ncsa.cv.faces)

Extractor OpenCVmsc-ChemCBCExtractor  requests, pika, openpyxl, xlrd, pymongohttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-msccv/browse/ChemCBCExtractoropencvYanmsc-IsletExtractor 

OpenCV Eyes (ncsa.cv.eyes)

Extractor OpenCV  requests, pika, openpyxl, xlrd, pymongohttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-msccv/browse/IsletExtractoropencvYanmsc-MonitorExtractorLiana

OpenCV Closeups (ncsa.cv.closeups)

Extractor OpenCV  requests, pika, openpyxl, xlrd, pymongohttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-msccv/browse/MonitorExtractoropencvYanLiana

OpenCV Profiles (ncsa.

msc

cv.

dailymonitor

profiles)

 Extractor requests, pika, openpyxl, xlrd, pymongoOpenCVhttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-msccv/browse/OldMonitorExtractorAshwiniopencvLiana

VLFeat (ncsa.image.caltech101)

Extractormsc-PhenotypeExtractor  requests, pika, openpyxl, xlrd, pymongohttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-msccv/browse/PhenotypeExtractorYanextractors-vlfeatKenton McHenry

CMU Sphinx (ncsa.

nlp

audio.

SNLP

speech2text)

 Extractor  Stanford CoreNLP tool, java, mavenCMU Sphinx, ffmpeg, soxhttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-nlpcore/browse/SNLPaudio/SNLPExtractorspeech2textLianaMarcus
Langid (ncsa.nlp.tikasimplelanguage) Extractor  Tika project page, pymedicinumpyhttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-nlp/browse/tikaSimpleLanguageLianaperson-detector
NLTK Summary (ncsa.nlp.simplesummary)Extractor   MATLAB

Natural Language Toolkit (NLTK) for Python, NLTK Data or at least:

 nltk.corpus,nltk.stem.porter and nltk.tokenize.punkt.

, FFMPEG, requests and pika

https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-person-detectornlp/browse/pythonSimpleSummarySandeepLiana
Versus Color Distribution (ncsa.person-tracker.versus.image)Extractor  python, MATLAB, FFMPEG requests and pikaVersushttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-person-trackingversus/browse/pythonSandeepKenton, Smruti
Stanford CoreNLP (ncsa.nlp.SNLP)Extractorlsva-cedd   Stanford CoreNLP tool, java, mavenhttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-ceddnlp/browse/SNLP/SNLPExtractorConstantinosLiana
Tika (ncsa.cinemetricsnlp.tika)Extractor   Tika project page, pymedicihttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cinemetricsnlp/browse/tikaConstantinosLiana
ImageMagick (ncsa.image.metadata) Extractor  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-core/browse/image/metadataMax. Rob

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