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Scientific

Qina Yan

Domain ToolType

Description                                     

RepositoriesContactDeployed?
 Hydrology
Hydrology




 

 








Advection Diffusion Solve a general advection-dispersion equation. Dong Kook Woo
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Chemical Mean AgeExtractorDetermine the mean age of chemical constituents with inputs of chemical dynamics. Dong Kook Woo
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Document Tables Extractor (ncsa.nlp.wordtables)Extractor https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-nlp/browse/WordTablesExtractor 
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GDAL (ncsa.geo.shpExtractor)Extractor https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-geo/browse
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GDAL (ncsa.geo.tiffExtractor)Extractor https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-geo/browse
 
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GDAL (ncsa.image.geotiff)Extractor https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-geotiff/browse
 
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Historical River Extractor (ncsa.cv.river)ExtractorExtract the river networks from the ancient hand-drawing maps and compare them with current river networkshttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/river
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Normalized Difference Vegetation Index (ncsa.arcgis.landsat7mosaic)Extractor https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-bd-cz/browse/ndviextractor
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River Chi IndexExtractorIdentify the river dynamics in a river basin and evaluate human activities' influences through Chi index in the streams. 
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River SinuosityExtractorStudy the maturity and equilibrium conditions of a stream through the sinuosity index.  
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Soil Moisture ChangeExtractorDetermine role of hydraulic redistribution in AZ (riparian site / upland site) by studying soil moisture change throughout different seasons. Esther Lee (estherl2010@gmail.com)
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Species ClassifierExtractorSAM based Species Classification from Hyperspectral data, Hyperspectral Indices, NDVI, SAVI, MSAVI, etc. Debsunder Dutta (debsunderdutta@gmail.com) leaving in July 2016

 

 
TerEx (ncsa.arcgis.floodplain)ExtractorIdentify the flat polygons and the heights inside a river valley.  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-bd-cz/browse/terex_floodplain
 
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Topographic DepressionsExtractorIdentify topographic depressions (TDs) and their distribution on landscape (Number, location, area, volume of TDs). 
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Tree DelineationConverterTree-wise voxelization of waveform data for lidar metrics that describes canopy structure (max intensity, height, etc...).  Individual tree delineation, tree leaf area density to describe vertical leaf distributio. https://opensource.ncsa.illinois.edu/bitbucket/projects/BD/repos/ir-lidar/browseKunxuan Wang
 
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Valley Safety ZonesExtractor1. Estimate submerging areas and water depths under extreme floods and map the safety zones in a river valley and 2. Understand river valley equilibrium condition. Qina Yan
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Vegetation IndicesExtractorCalculating vegetation indices such as NDVI and Surface Temperature from Landsat 7 and 8 satellite data. Debsunder Dutta (debsunderdutta@gmail.com) leaving in July 2016
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Ecology

 






netcdf (ncdump)Converter https://opensource.ncsa.illinois.edu/bitbucket/projects/POL/repos/converters-ncdump/browse
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PEcAn (PEcAn#Ameriflux)Converter https://opensource.ncsa.illinois.edu/bitbucket/projects/POL/repos/converters-pecan/browse
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PEcAn (PEcAn#DALEC)Converter https://opensource.ncsa.illinois.edu/bitbucket/projects/POL/repos/converters-pecan/browse
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PEcAn (PEcAn#ED2)Converter https://opensource.ncsa.illinois.edu/bitbucket/projects/POL/repos/converters-pecan/browse
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PEcAn (PEcAn#LINKAGES)Converter https://opensource.ncsa.illinois.edu/bitbucket/projects/POL/repos/converters-pecan/browse
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PEcAn (PEcAn#Sipnet)Converter https://opensource.ncsa.illinois.edu/bitbucket/projects/POL/repos/converters-pecan/browse
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PlantCV (terra.plantcv)Extractor https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-plantcv/browseYan Liu
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Civil & Environmental Engineering

Body of Water Detector (ncsa.image.ponddetect)

Extractor https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-maps/browse/feature_detection
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 GI IdentificationExtractor  
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 Human Preference Score (ncsa.image.humanpref)Extractor https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-maps/browse/humanpref
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Route Greenness (ncsa.xml.greenindexroute)

Extractor https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-maps/browse/greenroute
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 Social Media GI PreferencesExtractor  
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Stanford CoreNLP - Sentiment (ncsa.nlp.SNLPSentiment)Extractor https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-nlp/browse/SNLP/SNLPSentimentExtractor
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 TUV TriaxusExtractor  
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Social Science & Humanities





Bertillon Card Cell Extractor (ncsa.image.dmp)Extractor https://opensource.ncsa.illinois.edu/bitbucket/projects/DEBOD/repos/extractors-debod
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Census Form Cell Extractor (census-section-segmentor) Extractor https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/census
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Handwritten Decimals Extractor (ncsa.image.sphog.debod)Extractor https://opensource.ncsa.illinois.edu/bitbucket/projects/DEBOD/repos/extractors-handwrittendecimals
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Movie Slice (ncsa.movieslice)Extractor https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-movieslice/browse
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Person Detector (person-detector)Extractor https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-person-detector
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Person Tracker (ncsa.person-tracker)Extractor https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-person-tracking
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Video Analytics Toolbox (ncsa.cinemetrics_batch)Extractor https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-lsva-integrated/browse
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Biology, Genomics, MedicineFSL (mri2mesh)Extractor https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-mri/browse/mri2meshMarcus Slavenas
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Glomeruli (ncsa.msc.diagnosis)Extractor https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-msc/browse/Kidney
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General

Domain

Tool

TypeDescription                                     RepositoriesContactDeployed?

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

General

Calibre (ebook-converter)ConverterConvert e-books to a number of document formats.https://opensource.ncsa.illinois.edu/bitbucket/projects/POL/repos/converters-ebook-convert/browse 
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CMU Sphinx (ncsa.audio.speech2text)

ExtractorAudio recognition to extract text for speech within audio.https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-core/browse/audio/speech2text
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Daffodil (daffodil)ConverterConvert formats with a provided DFDL schema to XML.https://opensource.ncsa.illinois.edu/bitbucket/projects/POL/repos/converters-daffodil/browseKenton McHenry
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DBPedia (ncsa.dbpedia)ExtractorFind and define named entities within the given text.https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-dbpedia/browse
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FFmpeg (ffmpeg)ConverterConvert between a large number of video formats.https://opensource.ncsa.illinois.edu/bitbucket/projects/POL/repos/converters-ffmpeg/browse
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FLAC (flac)ConverterConvert to and from the FLAC format from other audio formats.https://opensource.ncsa.illinois.edu/bitbucket/projects/POL/repos/converters-flac/browse
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Ghostscript (ghostscript)ConverterConvert between document formats.https://opensource.ncsa.illinois.edu/bitbucket/projects/POL/repos/converters-ghostscript/browse
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htmldoc (htmldoc)ConverterConvert HTML to a number of document formats.https://opensource.ncsa.illinois.edu/bitbucket/projects/POL/repos/converters-htmldoc/browseKenton McHenry
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ImageMagick (ImageMagick)ConverterConvert between a large number of image formats.https://opensource.ncsa.illinois.edu/bitbucket/projects/POL/repos/converters-imagemagick/browseKenton McHenry
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ImageMagick (ncsa.image.metadata)ExtractorPull available EXIF image metadata from a given image.https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-core/browse/image/metadata
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Kabeja (kabeja)ConverterConvert between a handful of 3D and image formats.https://opensource.ncsa.illinois.edu/bitbucket/projects/POL/repos/converters-kabeja/browse 
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OpenCV - Faces (ncsa.cv.faces)

ExtractorFind faces in an image and return their locations.https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/extractors-opencv/extractors-opencv-facesKenton McHenry
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OpenCV - Eyes (ncsa.cv.eyes)

ExtractorFind eyes in an image and return their locations.https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/extractors-opencv/extractors-opencv-eyesKenton McHenry
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OpenCV - Closeups (ncsa.cv.closeups)

ExtractorDetermine whether an image is a closeup of a person or not.https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/extractors-opencv/extractors-opencv-closeupsKenton McHenry
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OpenCV - Profiles (ncsa.cv.profiles)

ExtractorFind human face profiles in an image and return their locations.https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/extractors-opencv/extractors-opencv-profilesKenton McHenry
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Langid (ncsa.nlp.simplelanguage)ExtractorIdentify the language of the given text.https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-nlp/browse/SimpleLanguage 
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LibreOffice (unoconv)ConverterConvert to and from a variety of document formats.https://opensource.ncsa.illinois.edu/bitbucket/projects/POL/repos/converters-unoconv/browse 
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NLTK - Summary (ncsa.nlp.simplesummary)ExtractorSummarize a body of text.https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-nlp/browse/SimpleSummary 
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Siegfried (siegfried)ExtractorExtract information about a given file relevant to identifying its type and validating its format.https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-siegfried/browse
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Stanford CoreNLP (ncsa.nlp.SNLP)ExtractorNatural Language Process extractions such as parts of speech, named entities, langauge, etc.https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-nlp/browse/SNLP/SNLPExtractor 
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Tesseract (ncsa.image.ocr)ExtractorObject Character Recognition (OCR) to extract text from images containing text.https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/extractors-tesseractKenton McHenry
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Tika (ncsa.nlp.tika)ExtractorDocument extractions such as language identification, ...https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-nlp/browse/tika
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txt2html (txt2html)ConverterConvert text documents to HTML.https://opensource.ncsa.illinois.edu/bitbucket/projects/POL/repos/converters-txt2html/browseKenton McHenry
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Versus - Color Distribution (ncsa.versus.image)ExtractorGenerate a distribution of color values within an image to be used for comparing how similar two images are.https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-versus/browse
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VLFeat (ncsa.image.caltech101)

ExtractorClassify images as to whether they contain objects from the Caltech101 dataset (e.g. people, airplanes, motorcycles, cougars, ...).https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/extractors-vlfeatKenton McHenry
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Zip (zip)ConverterUnzip zip archives.https://opensource.ncsa.illinois.edu/bitbucket/projects/POL/repos/converters-zip/browseKenton McHenry
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