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This page is for the refactoring of the existing extractors. The original wiki page Hosted VMs is still used for the deployments. 

 

ID (Extractor Name from config file,

same as queue name)

Programming

Language

SoftwareOSAssigned ToLink to repoWho wrote or worked on the code
DEPLOYED      
ncsa.image.ocrPythonTesseractLinuxruiliuocr 

ncsa.cv.faces

PythonOpenCVLinuxInna (may be?)https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/opencvLiana

ncsa.cv.eyes

PythonOpenCVLinuxInnahttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/opencvLiana

ncsa.cv.closeups

PythonOpenCVLinuxInnahttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/opencvLiana

ncsa.cv.profiles

PythonOpenCVLinuxInnahttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/opencvLiana

ncsa.cellprofiler.fluorescentcomet

Pythonpymedici (question)Windows https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/cellprofilerLiana

ncsa.cellprofiler.fly

Python Windows https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/cellprofilerLiana

ncsa.cellprofiler.human

Python Windows https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/cellprofilerLiana

ncsa.cellprofiler.silvercomet

Python Windows https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/cellprofilerLiana

ncsa.cellprofiler.speckle

Python Windows https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/cellprofilerLiana

ncsa.cellprofiler.trackobject

Python Windows https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/cellprofilerLiana

ncsa.cellprofiler.tumor

Python Windows https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/cellprofilerLiana

ncsa.cellprofiler.yeast

Python Windows https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/cellprofilerLiana

ncsa.image.sphog

Python Matlab, mnist-sphog Linux https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/handwritten/HandwrittenNumbers 
  • ncsa.image.caltech101
      
ncsa.bisque.histogram (notes: disabled)Python Linux   
ncsa.bisque.metadata (notes: disabled)Python Linux   
census-section-segmentorJava Linux https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/censusLiana, Inna
ncsa.cv.river PythonOpenCV (python), convert (from imagemagick), and GdalLinux https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/riverLiana
ncsa.geo.shpExtractorPython Linux https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-geo/browse 
ncsa.geotiffExtractorPython Linux https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-geo/browse 

ncsa.image.ponddetect

    https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-maps/browse/feature_detectionSandip, Marcus
ncsa.image.humanpref    https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-maps/browse/humanprefSandip, Marcus
       
NOT DEPLOYED      
ncsa.image.digitpy (notes: not in the Wiki page)Pythonopencv  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/handwritten/SimpleDigitPython 
ncsa.cv.pdfimages (not in the wiki page) pdfimages, from poppler-utils  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/poppler 
ncsa.cv.caltech101PythonMatlab and VLFeat 64-bit Mac OS  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/vlfeat 
dbpediaPython Natural Language Toolkit (NLTK) and rdflib. Luigi Marinihttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-dbpedia/browseLuigi Marini
digestPython   https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-digest/browse 
ncsa.image.geotiffPython

GDAL, Cython, numpy,
pygeoprocessing,
pika,
requests

    
ncsa.hpcPython   https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-hpc/browse 
LSVAJava   https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-lsva/browse 
LSVA integrated    https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-lsva-integrated/browse 
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