Build: #34 was successful
Job: Default Job was successful
Build log
The build generated 738 lines of output. Download or view full build log.
| 23-Mar-2018 14:16:31 | Build Clowder - extractors-msc - Default Job #34 (CATS-MSC-JOB1-34) started building on agent buildserver-3.os.ncsa.edu |
| 23-Mar-2018 14:16:31 | Remote agent on host buildserver-3.os.ncsa.edu |
| 23-Mar-2018 14:16:31 | Build working directory is /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-MSC-JOB1 |
| 23-Mar-2018 14:16:31 | Executing build Clowder - extractors-msc - Default Job #34 (CATS-MSC-JOB1-34) |
| 23-Mar-2018 14:16:31 | Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout' |
| 23-Mar-2018 14:16:31 | Checking out into /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-MSC-JOB1 |
| 23-Mar-2018 14:16:31 | Updating source code to revision: 6aaab3692bc88bb1c0016521723c45399615c5f2 |
| 23-Mar-2018 14:16:31 | Fetching 'refs/heads/master' from 'ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-msc.git'. Will try to do a shallow fetch. |
| 23-Mar-2018 14:16:31 | Warning: Permanently added '[127.0.0.1]:40855' (RSA) to the list of known hosts. |
| 23-Mar-2018 14:16:31 | Checking out revision 6aaab3692bc88bb1c0016521723c45399615c5f2. |
| 23-Mar-2018 14:16:32 | Already on 'master' |
| 23-Mar-2018 14:16:32 | Updated source code to revision: 6aaab3692bc88bb1c0016521723c45399615c5f2 |
| 23-Mar-2018 14:16:32 | Finished task 'Checkout Default Repository' with result: Success |
| 23-Mar-2018 14:16:32 | Running pre-build action: VCS Version Collector |
| 23-Mar-2018 14:16:32 | Starting task 'docker build' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script' |
| 23-Mar-2018 14:16:32 | Beginning to execute external process for build 'Clowder - extractors-msc - Default Job #34 (CATS-MSC-JOB1-34)' ... running command line: /bin/sh docker.sh ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-MSC-JOB1 ... using extra environment variables: bamboo_planRepository_1_branch=master bamboo_capability_system_builder_command_npm_6=/home/bamboo/node-v6.9.1/bin/npm bamboo_capability_system_builder_command_buckminster_4_3=/home/bamboo/buckminster-4.3/buckminster bamboo_capability_system_builder_node_Node_js_v6_9_1=/home/bamboo/node-v6.9.1/bin/node bamboo_dependency_parent_0=CATS-PYC2-69 bamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster bamboo_dependency_parent_total=1 bamboo_planRepository_1_branchDisplayName=master bamboo_repository_revision_number=6aaab3692bc88bb1c0016521723c45399615c5f2 bamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-MSC-JOB1-34 bamboo_repository_127172627_branch_name=master bamboo_repository_127172627_git_branch=master bamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build bamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-MSC-JOB1 bamboo_planRepository_1_name=extractors-msc bamboo_buildKey=CATS-MSC-JOB1 bamboo_capability_system_os=linux bamboo_shortPlanName=extractors-msc bamboo_planRepository_name=extractors-msc bamboo_repository_127172627_git_username= bamboo_buildNumber=34 bamboo_shortJobName=Default Job bamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-MSC-JOB1-34 bamboo_planRepository_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-msc.git bamboo_agentId=143032321 bamboo_planName=Clowder - extractors-msc bamboo_repository_127172627_revision_number=6aaab3692bc88bb1c0016521723c45399615c5f2 bamboo_shortPlanKey=MSC bamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt bamboo_capability_system_builder_node_Node_js_v0_10_28=/home/bamboo/node-v0.10.28/bin/node bamboo_shortJobKey=JOB1 bamboo_planRepository_revision=6aaab3692bc88bb1c0016521723c45399615c5f2 bamboo_buildTimeStamp=2018-03-23T13:56:51.096-05:00 bamboo_repository_previous_revision_number=6aaab3692bc88bb1c0016521723c45399615c5f2 bamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm bamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1 bamboo_planRepository_previousRevision=6aaab3692bc88bb1c0016521723c45399615c5f2 bamboo_repository_git_branch=master bamboo_buildResultKey=CATS-MSC-JOB1-34 bamboo_repository_branch_name=master bamboo_buildPlanName=Clowder - extractors-msc - Default Job bamboo_planRepository_1_revision=6aaab3692bc88bb1c0016521723c45399615c5f2 bamboo_capability_system_builder_command_python3=/usr/bin/python3 bamboo_repository_name=extractors-msc bamboo_buildFailed=false bamboo_capability_system_docker_executable=/usr/bin/docker bamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt bamboo_planRepository_branch=master bamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir bamboo_capability_system_git_executable=/usr/bin/git bamboo_repository_git_username= bamboo_planRepository_1_previousRevision=6aaab3692bc88bb1c0016521723c45399615c5f2 bamboo_capability_system_builder_sbt_SBT_0_13_13=/home/bamboo/sbt-0.13.13 bamboo_repository_127172627_name=extractors-msc bamboo_planRepository_branchDisplayName=master bamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs bamboo_planRepository_1_type=bbserver bamboo_planRepository_branchName=master bamboo_capability_system_builder_command_python2_7=/usr/bin/python2.7 bamboo_capability_system_hostname=buildserver-1 bamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.8.0_66 bamboo_capability_system_software_mongo=/usr/bin/mongo bamboo_plan_storageTag=plan-126976035 bamboo_hg_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_hg-repositories-cache bamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs bamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl bamboo_capability_system_jdk_JDK_1_8_0_66=/home/bamboo/jdk1.8.0_66 bamboo_planRepository_1_username= bamboo_planRepository_type=bbserver bamboo_git_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_git-repositories-cache bamboo_repository_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-msc.git bamboo_repository_127172627_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-msc.git bamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node bamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4 bamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.3.9 bamboo_tmp_directory=/home/bamboo/bamboo-agent-home/temp bamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-MSC-JOB1 bamboo_planKey=CATS-MSC bamboo_planRepository_1_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-msc.git bamboo_planRepository_username= bamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_66 bamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41 bamboo_capability_system_builder_command_mkcrx=/home/bamboo/mkcrx/mkcrx.sh bamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60 bamboo_repository_127172627_previous_revision_number=6aaab3692bc88bb1c0016521723c45399615c5f2 bamboo_planRepository_1_branchName=master |
| 23-Mar-2018 14:16:32 | Sending build context to Docker daemon 2.284 MB |
| 23-Mar-2018 14:16:32 | |
| 23-Mar-2018 14:16:32 | Step 1/11 : FROM clowder/pyclowder:1 |
| 23-Mar-2018 14:16:32 | ---> d1a9e970ed30 |
| 23-Mar-2018 14:16:32 | Step 2/11 : MAINTAINER Rob Kooper <kooper@illinois.edu> |
| 23-Mar-2018 14:16:32 | ---> Using cache |
| 23-Mar-2018 14:16:32 | ---> b30688e34e78 |
| 23-Mar-2018 14:16:32 | Step 3/11 : VOLUME /matlab |
| 23-Mar-2018 14:16:32 | ---> Using cache |
| 23-Mar-2018 14:16:32 | ---> ea0302e156e3 |
| 23-Mar-2018 14:16:32 | Step 4/11 : ENV RABBITMQ_URI "" RABBITMQ_EXCHANGE "clowder" RABBITMQ_VHOST "%2F" RABBITMQ_QUEUE "ncsa.msc.diagnosis" MATLAB_BINARY "/matlab/bin/matlab" MAIN_SCRIPT "diagnosis.py" |
| 23-Mar-2018 14:16:32 | ---> Using cache |
| 23-Mar-2018 14:16:32 | ---> 5baad9087e42 |
| 23-Mar-2018 14:16:32 | Step 5/11 : USER root |
| 23-Mar-2018 14:16:32 | ---> Using cache |
| 23-Mar-2018 14:16:32 | ---> b1e0eaf77f64 |
| 23-Mar-2018 14:16:32 | Step 6/11 : RUN pip install --upgrade pip |
| 23-Mar-2018 14:16:32 | ---> Using cache |
| 23-Mar-2018 14:16:32 | ---> 909c5d4b0489 |
| 23-Mar-2018 14:16:32 | Step 7/11 : RUN apt-get -qq -y update && apt-get -y install libxext6 libxmu6 libxt6 wget && mkdir -p /matlab && rm -rf /var/lib/apt/lists/* |
| 23-Mar-2018 14:16:32 | ---> Using cache |
| 23-Mar-2018 14:16:32 | ---> c2e10a7222c5 |
| 23-Mar-2018 14:16:32 | Step 8/11 : USER clowder |
| 23-Mar-2018 14:16:32 | ---> Using cache |
| 23-Mar-2018 14:16:32 | ---> 0711b80bd134 |
| 23-Mar-2018 14:16:32 | Step 9/11 : COPY entrypoint.sh *.py *.m data/*.mat *.json /home/clowder/ |
| 23-Mar-2018 14:16:32 | ---> Using cache |
| 23-Mar-2018 14:16:32 | ---> 9b76965e9c53 |
| 23-Mar-2018 14:16:32 | Step 10/11 : ENTRYPOINT /home/clowder/entrypoint.sh |
| 23-Mar-2018 14:16:32 | ---> Using cache |
| 23-Mar-2018 14:16:32 | ---> 20838c1f0ebf |
| 23-Mar-2018 14:16:32 | Step 11/11 : CMD extractor |
| 23-Mar-2018 14:16:32 | ---> Using cache |
| 23-Mar-2018 14:16:32 | ---> 038f7522237e |
| 23-Mar-2018 14:16:32 | Successfully built 038f7522237e |
| 23-Mar-2018 14:16:32 | The push refers to a repository [docker.io/clowder/extractors-msc-kidney] |
| 23-Mar-2018 14:16:32 | 3543093191ef: Preparing |
| 23-Mar-2018 14:16:32 | c8cb9129a1f4: Preparing |
| 23-Mar-2018 14:16:32 | 0e79a11ae6b6: Preparing |
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| 23-Mar-2018 14:16:32 | 59669fcdd5eb: Preparing |
| 23-Mar-2018 14:16:32 | 0fbe2bcb1bf9: Waiting |
| 23-Mar-2018 14:16:32 | 7f7a065d245a: Preparing |
| 23-Mar-2018 14:16:32 | f96e6b25195f: Preparing |
| 23-Mar-2018 14:16:32 | c56153825175: Preparing |
| 23-Mar-2018 14:16:32 | ae620432889d: Preparing |
| 23-Mar-2018 14:16:32 | a2022691bf95: Preparing |
| 23-Mar-2018 14:16:32 | 7f7a065d245a: Waiting |
| 23-Mar-2018 14:16:32 | 59669fcdd5eb: Waiting |
| 23-Mar-2018 14:16:32 | f96e6b25195f: Waiting |
| 23-Mar-2018 14:16:32 | ae620432889d: Waiting |
| 23-Mar-2018 14:16:32 | c56153825175: Waiting |
| 23-Mar-2018 14:16:32 | f2297bdfc824: Layer already exists |
| 23-Mar-2018 14:16:32 | 0cdb02ac1d86: Layer already exists |
| 23-Mar-2018 14:16:32 | 0e79a11ae6b6: Layer already exists |
| 23-Mar-2018 14:16:32 | c8cb9129a1f4: Layer already exists |
| 23-Mar-2018 14:16:32 | 3543093191ef: Layer already exists |
| 23-Mar-2018 14:16:32 | 59669fcdd5eb: Layer already exists |
| 23-Mar-2018 14:16:32 | 0fbe2bcb1bf9: Layer already exists |
| 23-Mar-2018 14:16:32 | 7f7a065d245a: Layer already exists |
| 23-Mar-2018 14:16:32 | f96e6b25195f: Layer already exists |
| 23-Mar-2018 14:16:32 | ae620432889d: Layer already exists |
| 23-Mar-2018 14:16:32 | c56153825175: Layer already exists |
| 23-Mar-2018 14:16:33 | a2022691bf95: Layer already exists |
| 23-Mar-2018 14:16:33 | browndog_v0.2.0: digest: sha256:4569996f156e795c682a971f643b754f85a496e78097ad8513f2737d5197954e size: 2826 |
| 23-Mar-2018 14:16:33 | The push refers to a repository [docker.io/clowder/extractors-msc-kidney] |
| 23-Mar-2018 14:16:33 | 3543093191ef: Preparing |
| 23-Mar-2018 14:16:33 | c8cb9129a1f4: Preparing |
| 23-Mar-2018 14:16:33 | 0e79a11ae6b6: Preparing |
| 23-Mar-2018 14:16:33 | 0cdb02ac1d86: Preparing |
| 23-Mar-2018 14:16:33 | f2297bdfc824: Preparing |
| 23-Mar-2018 14:16:33 | 0fbe2bcb1bf9: Preparing |
| 23-Mar-2018 14:16:33 | 59669fcdd5eb: Preparing |
| 23-Mar-2018 14:16:33 | 7f7a065d245a: Preparing |
| 23-Mar-2018 14:16:33 | f96e6b25195f: Preparing |
| 23-Mar-2018 14:16:33 | c56153825175: Preparing |
| 23-Mar-2018 14:16:33 | ae620432889d: Preparing |
| 23-Mar-2018 14:16:33 | a2022691bf95: Preparing |
| 23-Mar-2018 14:16:33 | 0fbe2bcb1bf9: Waiting |
| 23-Mar-2018 14:16:33 | 59669fcdd5eb: Waiting |
| 23-Mar-2018 14:16:33 | f96e6b25195f: Waiting |
| 23-Mar-2018 14:16:33 | ae620432889d: Waiting |
| 23-Mar-2018 14:16:33 | a2022691bf95: Waiting |
| 23-Mar-2018 14:16:34 | f2297bdfc824: Layer already exists |
| 23-Mar-2018 14:16:34 | 0e79a11ae6b6: Layer already exists |
| 23-Mar-2018 14:16:34 | c8cb9129a1f4: Layer already exists |
| 23-Mar-2018 14:16:34 | 0cdb02ac1d86: Layer already exists |
| 23-Mar-2018 14:16:34 | 3543093191ef: Layer already exists |
| 23-Mar-2018 14:16:34 | 59669fcdd5eb: Layer already exists |
| 23-Mar-2018 14:16:34 | 0fbe2bcb1bf9: Layer already exists |
| 23-Mar-2018 14:16:34 | 7f7a065d245a: Layer already exists |
| 23-Mar-2018 14:16:34 | c56153825175: Layer already exists |
| 23-Mar-2018 14:16:34 | f96e6b25195f: Layer already exists |
| 23-Mar-2018 14:16:34 | ae620432889d: Layer already exists |
| 23-Mar-2018 14:16:34 | a2022691bf95: Layer already exists |
| 23-Mar-2018 14:16:34 | browndog_v0.3.0: digest: sha256:4569996f156e795c682a971f643b754f85a496e78097ad8513f2737d5197954e size: 2826 |
| 23-Mar-2018 14:16:34 | The push refers to a repository [docker.io/clowder/extractors-msc-kidney] |
| 23-Mar-2018 14:16:34 | 3543093191ef: Preparing |
| 23-Mar-2018 14:16:34 | c8cb9129a1f4: Preparing |
| 23-Mar-2018 14:16:34 | 0e79a11ae6b6: Preparing |
| 23-Mar-2018 14:16:34 | 0cdb02ac1d86: Preparing |
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| 23-Mar-2018 14:16:34 | ae620432889d: Preparing |
| 23-Mar-2018 14:16:34 | a2022691bf95: Preparing |
| 23-Mar-2018 14:16:34 | 0fbe2bcb1bf9: Waiting |
| 23-Mar-2018 14:16:34 | f96e6b25195f: Waiting |
| 23-Mar-2018 14:16:34 | 59669fcdd5eb: Waiting |
| 23-Mar-2018 14:16:34 | c56153825175: Waiting |
| 23-Mar-2018 14:16:34 | ae620432889d: Waiting |
| 23-Mar-2018 14:16:34 | 7f7a065d245a: Waiting |
| 23-Mar-2018 14:16:34 | a2022691bf95: Waiting |
| 23-Mar-2018 14:16:35 | 0cdb02ac1d86: Layer already exists |
| 23-Mar-2018 14:16:35 | f2297bdfc824: Layer already exists |
| 23-Mar-2018 14:16:35 | c8cb9129a1f4: Layer already exists |
| 23-Mar-2018 14:16:35 | 0e79a11ae6b6: Layer already exists |
| 23-Mar-2018 14:16:35 | 3543093191ef: Layer already exists |
| 23-Mar-2018 14:16:35 | 0fbe2bcb1bf9: Layer already exists |
| 23-Mar-2018 14:16:35 | 59669fcdd5eb: Layer already exists |
| 23-Mar-2018 14:16:35 | 7f7a065d245a: Layer already exists |
| 23-Mar-2018 14:16:35 | f96e6b25195f: Layer already exists |
| 23-Mar-2018 14:16:35 | c56153825175: Layer already exists |
| 23-Mar-2018 14:16:35 | ae620432889d: Layer already exists |
| 23-Mar-2018 14:16:35 | a2022691bf95: Layer already exists |
| 23-Mar-2018 14:16:35 | latest: digest: sha256:4569996f156e795c682a971f643b754f85a496e78097ad8513f2737d5197954e size: 2826 |
| 23-Mar-2018 14:16:36 | Untagged: 14387:latest |
| 23-Mar-2018 14:16:36 | Sending build context to Docker daemon 67.07 kB |
| 23-Mar-2018 14:16:36 | |
| 23-Mar-2018 14:16:36 | Step 1/11 : FROM clowder/pyclowder:1 |
| 23-Mar-2018 14:16:36 | ---> d1a9e970ed30 |
| 23-Mar-2018 14:16:36 | Step 2/11 : MAINTAINER Yan Zhao <yanzhao3@illinois.edu> |
| 23-Mar-2018 14:16:36 | ---> Using cache |
| 23-Mar-2018 14:16:36 | ---> 95c36e1341c0 |
| 23-Mar-2018 14:16:36 | Step 3/11 : ENV RABBITMQ_URI "" RABBITMQ_EXCHANGE "clowder" RABBITMQ_VHOST "%2F" RABBITMQ_QUEUE "ncsa.msc.IsletExtractor" MONGO_URI "" DB_USERNAME "" DB_PASSWORD "" MAIN_SCRIPT "extractor-Islet.py" |
| 23-Mar-2018 14:16:36 | ---> Using cache |
| 23-Mar-2018 14:16:36 | ---> c743636cd977 |
| 23-Mar-2018 14:16:36 | Step 4/11 : USER root |
| 23-Mar-2018 14:16:36 | ---> Using cache |
| 23-Mar-2018 14:16:36 | ---> 7d5eb79cc5d7 |
| 23-Mar-2018 14:16:36 | Step 5/11 : COPY requirements.txt /home/clowder/ |
| 23-Mar-2018 14:16:36 | ---> Using cache |
| 23-Mar-2018 14:16:36 | ---> 60bdacf7f7db |
| 23-Mar-2018 14:16:36 | Step 6/11 : RUN pip install --upgrade pip |
| 23-Mar-2018 14:16:36 | ---> Using cache |
| 23-Mar-2018 14:16:36 | ---> c66abff40dfd |
| 23-Mar-2018 14:16:36 | Step 7/11 : RUN pip install -r /home/clowder/requirements.txt |
| 23-Mar-2018 14:16:36 | ---> Using cache |
| 23-Mar-2018 14:16:36 | ---> 9295a3a9ed79 |
| 23-Mar-2018 14:16:36 | Step 8/11 : USER clowder |
| 23-Mar-2018 14:16:36 | ---> Using cache |
| 23-Mar-2018 14:16:36 | ---> f18ce40ae9c5 |
| 23-Mar-2018 14:16:36 | Step 9/11 : COPY entrypoint.sh *.py *.json /home/clowder/ |
| 23-Mar-2018 14:16:36 | ---> Using cache |
| 23-Mar-2018 14:16:36 | ---> ba2a4e13dbde |
| 23-Mar-2018 14:16:36 | Step 10/11 : ENTRYPOINT /home/clowder/entrypoint.sh |
| 23-Mar-2018 14:16:36 | ---> Using cache |
| 23-Mar-2018 14:16:36 | ---> bb48801ad0bb |
| 23-Mar-2018 14:16:36 | Step 11/11 : CMD extractor |
| 23-Mar-2018 14:16:36 | ---> Using cache |
| 23-Mar-2018 14:16:36 | ---> 3b009a5673fd |
| 23-Mar-2018 14:16:36 | Successfully built 3b009a5673fd |
| 23-Mar-2018 14:16:36 | The push refers to a repository [docker.io/clowder/extractors-msc-islet] |
| 23-Mar-2018 14:16:36 | 44687f7f5081: Preparing |
| 23-Mar-2018 14:16:36 | 24cf52cfd87d: Preparing |
| 23-Mar-2018 14:16:36 | 27230402bb5b: Preparing |
| 23-Mar-2018 14:16:36 | 4e079163f01a: Preparing |
| 23-Mar-2018 14:16:36 | 0cdb02ac1d86: Preparing |
| 23-Mar-2018 14:16:36 | f2297bdfc824: Preparing |
| 23-Mar-2018 14:16:36 | 0fbe2bcb1bf9: Preparing |
| 23-Mar-2018 14:16:36 | 59669fcdd5eb: Preparing |
| 23-Mar-2018 14:16:36 | 7f7a065d245a: Preparing |
| 23-Mar-2018 14:16:36 | f96e6b25195f: Preparing |
| 23-Mar-2018 14:16:36 | c56153825175: Preparing |
| 23-Mar-2018 14:16:36 | ae620432889d: Preparing |
| 23-Mar-2018 14:16:36 | a2022691bf95: Preparing |
| 23-Mar-2018 14:16:36 | 59669fcdd5eb: Waiting |
| 23-Mar-2018 14:16:36 | 7f7a065d245a: Waiting |
| 23-Mar-2018 14:16:36 | f96e6b25195f: Waiting |
| 23-Mar-2018 14:16:36 | c56153825175: Waiting |
| 23-Mar-2018 14:16:36 | ae620432889d: Waiting |
| 23-Mar-2018 14:16:36 | a2022691bf95: Waiting |
| 23-Mar-2018 14:16:36 | f2297bdfc824: Waiting |
| 23-Mar-2018 14:16:36 | 0fbe2bcb1bf9: Waiting |
| 23-Mar-2018 14:16:36 | 0cdb02ac1d86: Layer already exists |
| 23-Mar-2018 14:16:36 | 44687f7f5081: Layer already exists |
| 23-Mar-2018 14:16:36 | 4e079163f01a: Layer already exists |
| 23-Mar-2018 14:16:36 | 27230402bb5b: Layer already exists |
| 23-Mar-2018 14:16:36 | 24cf52cfd87d: Layer already exists |
| 23-Mar-2018 14:16:36 | f2297bdfc824: Layer already exists |
| 23-Mar-2018 14:16:36 | 0fbe2bcb1bf9: Layer already exists |
| 23-Mar-2018 14:16:36 | 7f7a065d245a: Layer already exists |
| 23-Mar-2018 14:16:36 | 59669fcdd5eb: Layer already exists |
| 23-Mar-2018 14:16:36 | f96e6b25195f: Layer already exists |
| 23-Mar-2018 14:16:36 | c56153825175: Layer already exists |
| 23-Mar-2018 14:16:37 | ae620432889d: Layer already exists |
| 23-Mar-2018 14:16:37 | a2022691bf95: Layer already exists |
| 23-Mar-2018 14:16:37 | browndog_v0.2.0: digest: sha256:47148bc597c9367c882158b5c622188b8182c676c90572ea737bc9cab9eced09 size: 3031 |
| 23-Mar-2018 14:16:38 | The push refers to a repository [docker.io/clowder/extractors-msc-islet] |
| 23-Mar-2018 14:16:38 | 44687f7f5081: Preparing |
| 23-Mar-2018 14:16:38 | 24cf52cfd87d: Preparing |
| 23-Mar-2018 14:16:38 | 27230402bb5b: Preparing |
| 23-Mar-2018 14:16:38 | 4e079163f01a: Preparing |
| 23-Mar-2018 14:16:38 | 0cdb02ac1d86: Preparing |
| 23-Mar-2018 14:16:38 | f2297bdfc824: Preparing |
| 23-Mar-2018 14:16:38 | 0fbe2bcb1bf9: Preparing |
| 23-Mar-2018 14:16:38 | f2297bdfc824: Waiting |
| 23-Mar-2018 14:16:38 | 59669fcdd5eb: Preparing |
| 23-Mar-2018 14:16:38 | 7f7a065d245a: Preparing |
| 23-Mar-2018 14:16:38 | f96e6b25195f: Preparing |
| 23-Mar-2018 14:16:38 | 0fbe2bcb1bf9: Waiting |
| 23-Mar-2018 14:16:38 | 59669fcdd5eb: Waiting |
| 23-Mar-2018 14:16:38 | c56153825175: Preparing |
| 23-Mar-2018 14:16:38 | ae620432889d: Preparing |
| 23-Mar-2018 14:16:38 | a2022691bf95: Preparing |
| 23-Mar-2018 14:16:38 | f96e6b25195f: Waiting |
| 23-Mar-2018 14:16:38 | c56153825175: Waiting |
| 23-Mar-2018 14:16:38 | ae620432889d: Waiting |
| 23-Mar-2018 14:16:38 | a2022691bf95: Waiting |
| 23-Mar-2018 14:16:38 | 0cdb02ac1d86: Layer already exists |
| 23-Mar-2018 14:16:38 | 4e079163f01a: Layer already exists |
| 23-Mar-2018 14:16:38 | 44687f7f5081: Layer already exists |
| 23-Mar-2018 14:16:38 | 24cf52cfd87d: Layer already exists |
| 23-Mar-2018 14:16:38 | 27230402bb5b: Layer already exists |
| 23-Mar-2018 14:16:38 | 59669fcdd5eb: Layer already exists |
| 23-Mar-2018 14:16:38 | 0fbe2bcb1bf9: Layer already exists |
| 23-Mar-2018 14:16:38 | f2297bdfc824: Layer already exists |
| 23-Mar-2018 14:16:38 | 7f7a065d245a: Layer already exists |
| 23-Mar-2018 14:16:38 | f96e6b25195f: Layer already exists |
| 23-Mar-2018 14:16:38 | c56153825175: Layer already exists |
| 23-Mar-2018 14:16:38 | ae620432889d: Layer already exists |
| 23-Mar-2018 14:16:39 | a2022691bf95: Layer already exists |
| 23-Mar-2018 14:16:39 | browndog_v0.3.0: digest: sha256:47148bc597c9367c882158b5c622188b8182c676c90572ea737bc9cab9eced09 size: 3031 |
| 23-Mar-2018 14:16:39 | The push refers to a repository [docker.io/clowder/extractors-msc-islet] |
| 23-Mar-2018 14:16:39 | 44687f7f5081: Preparing |
| 23-Mar-2018 14:16:39 | 24cf52cfd87d: Preparing |
| 23-Mar-2018 14:16:39 | 27230402bb5b: Preparing |
| 23-Mar-2018 14:16:39 | 4e079163f01a: Preparing |
| 23-Mar-2018 14:16:39 | 0cdb02ac1d86: Preparing |
| 23-Mar-2018 14:16:39 | f2297bdfc824: Preparing |
| 23-Mar-2018 14:16:39 | 0fbe2bcb1bf9: Preparing |
| 23-Mar-2018 14:16:39 | 59669fcdd5eb: Preparing |
| 23-Mar-2018 14:16:39 | 7f7a065d245a: Preparing |
| 23-Mar-2018 14:16:39 | f96e6b25195f: Preparing |
| 23-Mar-2018 14:16:39 | c56153825175: Preparing |
| 23-Mar-2018 14:16:39 | ae620432889d: Preparing |
| 23-Mar-2018 14:16:39 | a2022691bf95: Preparing |
| 23-Mar-2018 14:16:39 | 59669fcdd5eb: Waiting |
| 23-Mar-2018 14:16:39 | c56153825175: Waiting |
| 23-Mar-2018 14:16:39 | 7f7a065d245a: Waiting |
| 23-Mar-2018 14:16:39 | ae620432889d: Waiting |
| 23-Mar-2018 14:16:39 | f96e6b25195f: Waiting |
| 23-Mar-2018 14:16:39 | a2022691bf95: Waiting |
| 23-Mar-2018 14:16:39 | f2297bdfc824: Waiting |
| 23-Mar-2018 14:16:39 | 0fbe2bcb1bf9: Waiting |
| 23-Mar-2018 14:16:40 | 27230402bb5b: Layer already exists |
| 23-Mar-2018 14:16:40 | 0cdb02ac1d86: Layer already exists |
| 23-Mar-2018 14:16:40 | 24cf52cfd87d: Layer already exists |
| 23-Mar-2018 14:16:40 | 44687f7f5081: Layer already exists |
| 23-Mar-2018 14:16:40 | 4e079163f01a: Layer already exists |
| 23-Mar-2018 14:16:40 | f2297bdfc824: Layer already exists |
| 23-Mar-2018 14:16:40 | 59669fcdd5eb: Layer already exists |
| 23-Mar-2018 14:16:40 | 0fbe2bcb1bf9: Layer already exists |
| 23-Mar-2018 14:16:40 | 7f7a065d245a: Layer already exists |
| 23-Mar-2018 14:16:40 | f96e6b25195f: Layer already exists |
| 23-Mar-2018 14:16:40 | c56153825175: Layer already exists |
| 23-Mar-2018 14:16:40 | ae620432889d: Layer already exists |
| 23-Mar-2018 14:16:40 | a2022691bf95: Layer already exists |
| 23-Mar-2018 14:16:41 | latest: digest: sha256:47148bc597c9367c882158b5c622188b8182c676c90572ea737bc9cab9eced09 size: 3031 |
| 23-Mar-2018 14:16:41 | Untagged: 14387:latest |
| 23-Mar-2018 14:16:41 | Sending build context to Docker daemon 66.05 kB |
| 23-Mar-2018 14:16:41 | |
| 23-Mar-2018 14:16:41 | Step 1/11 : FROM clowder/pyclowder:1 |
| 23-Mar-2018 14:16:41 | ---> d1a9e970ed30 |
| 23-Mar-2018 14:16:41 | Step 2/11 : MAINTAINER Yan Zhao <yanzhao3@illinois.edu> |
| 23-Mar-2018 14:16:41 | ---> Using cache |
| 23-Mar-2018 14:16:41 | ---> 95c36e1341c0 |
| 23-Mar-2018 14:16:41 | Step 3/11 : ENV RABBITMQ_URI "" RABBITMQ_EXCHANGE "clowder" RABBITMQ_VHOST "%2F" RABBITMQ_QUEUE "ncsa.msc.ChemCBCExtractor" MONGO_URI "" DB_USERNAME "" DB_PASSWORD "" MAIN_SCRIPT "extractor-Chem.py" |
| 23-Mar-2018 14:16:41 | ---> Using cache |
| 23-Mar-2018 14:16:41 | ---> d9c601ede78c |
| 23-Mar-2018 14:16:41 | Step 4/11 : USER root |
| 23-Mar-2018 14:16:41 | ---> Using cache |
| 23-Mar-2018 14:16:41 | ---> 5afbb6c8481b |
| 23-Mar-2018 14:16:41 | Step 5/11 : COPY requirements.txt /home/clowder/ |
| 23-Mar-2018 14:16:41 | ---> Using cache |
| 23-Mar-2018 14:16:41 | ---> a8f43ae85449 |
| 23-Mar-2018 14:16:41 | Step 6/11 : RUN pip install --upgrade pip |
| 23-Mar-2018 14:16:41 | ---> Using cache |
| 23-Mar-2018 14:16:41 | ---> f82e9971fcb7 |
| 23-Mar-2018 14:16:41 | Step 7/11 : RUN pip install -r /home/clowder/requirements.txt |
| 23-Mar-2018 14:16:41 | ---> Using cache |
| 23-Mar-2018 14:16:41 | ---> 2544848d0a9a |
| 23-Mar-2018 14:16:41 | Step 8/11 : USER clowder |
| 23-Mar-2018 14:16:41 | ---> Using cache |
| 23-Mar-2018 14:16:41 | ---> e81573fd067d |
| 23-Mar-2018 14:16:41 | Step 9/11 : COPY entrypoint.sh *.py *.json /home/clowder/ |
| 23-Mar-2018 14:16:41 | ---> Using cache |
| 23-Mar-2018 14:16:41 | ---> bf0d954a532e |
| 23-Mar-2018 14:16:41 | Step 10/11 : ENTRYPOINT /home/clowder/entrypoint.sh |
| 23-Mar-2018 14:16:41 | ---> Using cache |
| 23-Mar-2018 14:16:41 | ---> a3ad92594e70 |
| 23-Mar-2018 14:16:41 | Step 11/11 : CMD extractor |
| 23-Mar-2018 14:16:41 | ---> Using cache |
| 23-Mar-2018 14:16:41 | ---> 74dba2ae3af3 |
| 23-Mar-2018 14:16:41 | Successfully built 74dba2ae3af3 |
| 23-Mar-2018 14:16:41 | The push refers to a repository [docker.io/clowder/extractors-msc-chemcbc] |
| 23-Mar-2018 14:16:41 | 0672cb628e73: Preparing |
| 23-Mar-2018 14:16:41 | 6e0b68f3a11e: Preparing |
| 23-Mar-2018 14:16:41 | 9301a9f98473: Preparing |
| 23-Mar-2018 14:16:41 | f928fa89dd53: Preparing |
| 23-Mar-2018 14:16:41 | 0cdb02ac1d86: Preparing |
| 23-Mar-2018 14:16:41 | f2297bdfc824: Preparing |
| 23-Mar-2018 14:16:41 | 0fbe2bcb1bf9: Preparing |
| 23-Mar-2018 14:16:41 | 59669fcdd5eb: Preparing |
| 23-Mar-2018 14:16:41 | 7f7a065d245a: Preparing |
| 23-Mar-2018 14:16:41 | f96e6b25195f: Preparing |
| 23-Mar-2018 14:16:41 | c56153825175: Preparing |
| 23-Mar-2018 14:16:41 | f2297bdfc824: Waiting |
| 23-Mar-2018 14:16:41 | ae620432889d: Preparing |
| 23-Mar-2018 14:16:41 | a2022691bf95: Preparing |
| 23-Mar-2018 14:16:41 | 59669fcdd5eb: Waiting |
| 23-Mar-2018 14:16:41 | ae620432889d: Waiting |
| 23-Mar-2018 14:16:41 | a2022691bf95: Waiting |
| 23-Mar-2018 14:16:41 | c56153825175: Waiting |
| 23-Mar-2018 14:16:41 | 7f7a065d245a: Waiting |
| 23-Mar-2018 14:16:41 | 0cdb02ac1d86: Layer already exists |
| 23-Mar-2018 14:16:41 | f928fa89dd53: Layer already exists |
| 23-Mar-2018 14:16:41 | 0672cb628e73: Layer already exists |
| 23-Mar-2018 14:16:41 | 6e0b68f3a11e: Layer already exists |
| 23-Mar-2018 14:16:41 | f2297bdfc824: Layer already exists |
| 23-Mar-2018 14:16:41 | 9301a9f98473: Layer already exists |
| 23-Mar-2018 14:16:41 | 0fbe2bcb1bf9: Layer already exists |
| 23-Mar-2018 14:16:41 | 59669fcdd5eb: Layer already exists |
| 23-Mar-2018 14:16:41 | 7f7a065d245a: Layer already exists |
| 23-Mar-2018 14:16:41 | c56153825175: Layer already exists |
| 23-Mar-2018 14:16:41 | f96e6b25195f: Layer already exists |
| 23-Mar-2018 14:16:42 | ae620432889d: Layer already exists |
| 23-Mar-2018 14:16:42 | a2022691bf95: Layer already exists |
| 23-Mar-2018 14:16:42 | browndog_v0.2.0: digest: sha256:b9c813a75801d726cf94a29f8266e1ca1708de6545d0af7c737682f6d1199dba size: 3031 |
| 23-Mar-2018 14:16:42 | The push refers to a repository [docker.io/clowder/extractors-msc-chemcbc] |
| 23-Mar-2018 14:16:42 | 0672cb628e73: Preparing |
| 23-Mar-2018 14:16:42 | 6e0b68f3a11e: Preparing |
| 23-Mar-2018 14:16:42 | 9301a9f98473: Preparing |
| 23-Mar-2018 14:16:42 | f928fa89dd53: Preparing |
| 23-Mar-2018 14:16:42 | 0cdb02ac1d86: Preparing |
| 23-Mar-2018 14:16:42 | f2297bdfc824: Preparing |
| 23-Mar-2018 14:16:42 | 0fbe2bcb1bf9: Preparing |
| 23-Mar-2018 14:16:42 | 59669fcdd5eb: Preparing |
| 23-Mar-2018 14:16:42 | 7f7a065d245a: Preparing |
| 23-Mar-2018 14:16:42 | f96e6b25195f: Preparing |
| 23-Mar-2018 14:16:42 | c56153825175: Preparing |
| 23-Mar-2018 14:16:42 | ae620432889d: Preparing |
| 23-Mar-2018 14:16:42 | a2022691bf95: Preparing |
| 23-Mar-2018 14:16:42 | f96e6b25195f: Waiting |
| 23-Mar-2018 14:16:42 | c56153825175: Waiting |
| 23-Mar-2018 14:16:42 | f2297bdfc824: Waiting |
| 23-Mar-2018 14:16:42 | ae620432889d: Waiting |
| 23-Mar-2018 14:16:42 | a2022691bf95: Waiting |
| 23-Mar-2018 14:16:42 | 0fbe2bcb1bf9: Waiting |
| 23-Mar-2018 14:16:42 | 59669fcdd5eb: Waiting |
| 23-Mar-2018 14:16:42 | 7f7a065d245a: Waiting |
| 23-Mar-2018 14:16:43 | 0cdb02ac1d86: Layer already exists |
| 23-Mar-2018 14:16:43 | 0672cb628e73: Layer already exists |
| 23-Mar-2018 14:16:43 | 6e0b68f3a11e: Layer already exists |
| 23-Mar-2018 14:16:43 | f928fa89dd53: Layer already exists |
| 23-Mar-2018 14:16:43 | 9301a9f98473: Layer already exists |
| 23-Mar-2018 14:16:43 | f2297bdfc824: Layer already exists |
| 23-Mar-2018 14:16:43 | 7f7a065d245a: Layer already exists |
| 23-Mar-2018 14:16:43 | 59669fcdd5eb: Layer already exists |
| 23-Mar-2018 14:16:43 | f96e6b25195f: Layer already exists |
| 23-Mar-2018 14:16:43 | 0fbe2bcb1bf9: Layer already exists |
| 23-Mar-2018 14:16:43 | ae620432889d: Layer already exists |
| 23-Mar-2018 14:16:43 | c56153825175: Layer already exists |
| 23-Mar-2018 14:16:43 | a2022691bf95: Layer already exists |
| 23-Mar-2018 14:16:43 | browndog_v0.3.0: digest: sha256:b9c813a75801d726cf94a29f8266e1ca1708de6545d0af7c737682f6d1199dba size: 3031 |
| 23-Mar-2018 14:16:44 | The push refers to a repository [docker.io/clowder/extractors-msc-chemcbc] |
| 23-Mar-2018 14:16:44 | 0672cb628e73: Preparing |
| 23-Mar-2018 14:16:44 | 6e0b68f3a11e: Preparing |
| 23-Mar-2018 14:16:44 | 9301a9f98473: Preparing |
| 23-Mar-2018 14:16:44 | f928fa89dd53: Preparing |
| 23-Mar-2018 14:16:44 | 0cdb02ac1d86: Preparing |
| 23-Mar-2018 14:16:44 | f2297bdfc824: Preparing |
| 23-Mar-2018 14:16:44 | 0fbe2bcb1bf9: Preparing |
| 23-Mar-2018 14:16:44 | 59669fcdd5eb: Preparing |
| 23-Mar-2018 14:16:44 | 7f7a065d245a: Preparing |
| 23-Mar-2018 14:16:44 | f96e6b25195f: Preparing |
| 23-Mar-2018 14:16:44 | c56153825175: Preparing |
| 23-Mar-2018 14:16:44 | ae620432889d: Preparing |
| 23-Mar-2018 14:16:44 | a2022691bf95: Preparing |
| 23-Mar-2018 14:16:44 | 0fbe2bcb1bf9: Waiting |
| 23-Mar-2018 14:16:44 | 59669fcdd5eb: Waiting |
| 23-Mar-2018 14:16:44 | 7f7a065d245a: Waiting |
| 23-Mar-2018 14:16:44 | f96e6b25195f: Waiting |
| 23-Mar-2018 14:16:44 | c56153825175: Waiting |
| 23-Mar-2018 14:16:44 | ae620432889d: Waiting |
| 23-Mar-2018 14:16:44 | a2022691bf95: Waiting |
| 23-Mar-2018 14:16:44 | f2297bdfc824: Waiting |
| 23-Mar-2018 14:16:44 | 0cdb02ac1d86: Layer already exists |
| 23-Mar-2018 14:16:44 | f928fa89dd53: Layer already exists |
| 23-Mar-2018 14:16:44 | 6e0b68f3a11e: Layer already exists |
| 23-Mar-2018 14:16:44 | 0672cb628e73: Layer already exists |
| 23-Mar-2018 14:16:44 | 9301a9f98473: Layer already exists |
| 23-Mar-2018 14:16:44 | f2297bdfc824: Layer already exists |
| 23-Mar-2018 14:16:44 | 59669fcdd5eb: Layer already exists |
| 23-Mar-2018 14:16:44 | 7f7a065d245a: Layer already exists |
| 23-Mar-2018 14:16:44 | f96e6b25195f: Layer already exists |
| 23-Mar-2018 14:16:44 | 0fbe2bcb1bf9: Layer already exists |
| 23-Mar-2018 14:16:44 | c56153825175: Layer already exists |
| 23-Mar-2018 14:16:44 | ae620432889d: Layer already exists |
| 23-Mar-2018 14:16:45 | a2022691bf95: Layer already exists |
| 23-Mar-2018 14:16:45 | latest: digest: sha256:b9c813a75801d726cf94a29f8266e1ca1708de6545d0af7c737682f6d1199dba size: 3031 |
| 23-Mar-2018 14:16:45 | Untagged: 14387:latest |
| 23-Mar-2018 14:16:45 | Sending build context to Docker daemon 198.1 kB |
| 23-Mar-2018 14:16:45 | |
| 23-Mar-2018 14:16:45 | Step 1/11 : FROM clowder/pyclowder:1 |
| 23-Mar-2018 14:16:45 | ---> d1a9e970ed30 |
| 23-Mar-2018 14:16:45 | Step 2/11 : MAINTAINER Yan Zhao <yanzhao3@illinois.edu> |
| 23-Mar-2018 14:16:45 | ---> Using cache |
| 23-Mar-2018 14:16:45 | ---> 95c36e1341c0 |
| 23-Mar-2018 14:16:45 | Step 3/11 : ENV RABBITMQ_URI "" RABBITMQ_EXCHANGE "clowder" RABBITMQ_VHOST "%2F" RABBITMQ_QUEUE "ncsa.msc.MonitorExtractor" MONGO_URI "" DB_USERNAME "" DB_PASSWORD "" MAIN_SCRIPT "extractor-Monitor.py" |
| 23-Mar-2018 14:16:45 | ---> Using cache |
| 23-Mar-2018 14:16:45 | ---> 54973135d069 |
| 23-Mar-2018 14:16:45 | Step 4/11 : USER root |
| 23-Mar-2018 14:16:45 | ---> Using cache |
| 23-Mar-2018 14:16:45 | ---> d745b5b5d902 |
| 23-Mar-2018 14:16:45 | Step 5/11 : COPY requirements.txt /home/clowder/ |
| 23-Mar-2018 14:16:45 | ---> Using cache |
| 23-Mar-2018 14:16:45 | ---> ea1969fa6879 |
| 23-Mar-2018 14:16:45 | Step 6/11 : RUN pip install --upgrade pip |
| 23-Mar-2018 14:16:45 | ---> Using cache |
| 23-Mar-2018 14:16:45 | ---> 5c17be3d0c0b |
| 23-Mar-2018 14:16:45 | Step 7/11 : RUN pip install -r /home/clowder/requirements.txt |
| 23-Mar-2018 14:16:45 | ---> Using cache |
| 23-Mar-2018 14:16:45 | ---> 007862a8cf1b |
| 23-Mar-2018 14:16:45 | Step 8/11 : USER clowder |
| 23-Mar-2018 14:16:45 | ---> Using cache |
| 23-Mar-2018 14:16:45 | ---> 5ba2fceade97 |
| 23-Mar-2018 14:16:45 | Step 9/11 : COPY entrypoint.sh *.py *.json /home/clowder/ |
| 23-Mar-2018 14:16:45 | ---> Using cache |
| 23-Mar-2018 14:16:45 | ---> d8bc2b09b30f |
| 23-Mar-2018 14:16:45 | Step 10/11 : ENTRYPOINT /home/clowder/entrypoint.sh |
| 23-Mar-2018 14:16:45 | ---> Using cache |
| 23-Mar-2018 14:16:45 | ---> a6731dbaeafe |
| 23-Mar-2018 14:16:45 | Step 11/11 : CMD extractor |
| 23-Mar-2018 14:16:45 | ---> Using cache |
| 23-Mar-2018 14:16:45 | ---> eb9ac109d2ff |
| 23-Mar-2018 14:16:45 | Successfully built eb9ac109d2ff |
| 23-Mar-2018 14:16:45 | The push refers to a repository [docker.io/clowder/extractors-msc-monitor] |
| 23-Mar-2018 14:16:45 | ed92e5cb33ab: Preparing |
| 23-Mar-2018 14:16:45 | 60ede1fb2a8a: Preparing |
| 23-Mar-2018 14:16:45 | febb8bdc4437: Preparing |
| 23-Mar-2018 14:16:45 | 0334fab2f1cf: Preparing |
| 23-Mar-2018 14:16:45 | 0cdb02ac1d86: Preparing |
| 23-Mar-2018 14:16:45 | f2297bdfc824: Preparing |
| 23-Mar-2018 14:16:45 | 0fbe2bcb1bf9: Preparing |
| 23-Mar-2018 14:16:45 | 59669fcdd5eb: Preparing |
| 23-Mar-2018 14:16:45 | 7f7a065d245a: Preparing |
| 23-Mar-2018 14:16:45 | f96e6b25195f: Preparing |
| 23-Mar-2018 14:16:45 | c56153825175: Preparing |
| 23-Mar-2018 14:16:45 | ae620432889d: Preparing |
| 23-Mar-2018 14:16:45 | a2022691bf95: Preparing |
| 23-Mar-2018 14:16:45 | 7f7a065d245a: Waiting |
| 23-Mar-2018 14:16:45 | f96e6b25195f: Waiting |
| 23-Mar-2018 14:16:45 | c56153825175: Waiting |
| 23-Mar-2018 14:16:45 | ae620432889d: Waiting |
| 23-Mar-2018 14:16:45 | a2022691bf95: Waiting |
| 23-Mar-2018 14:16:45 | 59669fcdd5eb: Waiting |
| 23-Mar-2018 14:16:45 | 0fbe2bcb1bf9: Waiting |
| 23-Mar-2018 14:16:45 | f2297bdfc824: Waiting |
| 23-Mar-2018 14:16:46 | 0cdb02ac1d86: Layer already exists |
| 23-Mar-2018 14:16:46 | febb8bdc4437: Layer already exists |
| 23-Mar-2018 14:16:46 | f2297bdfc824: Layer already exists |
| 23-Mar-2018 14:16:46 | ed92e5cb33ab: Layer already exists |
| 23-Mar-2018 14:16:46 | 0334fab2f1cf: Layer already exists |
| 23-Mar-2018 14:16:46 | 0fbe2bcb1bf9: Layer already exists |
| 23-Mar-2018 14:16:46 | 59669fcdd5eb: Layer already exists |
| 23-Mar-2018 14:16:46 | 7f7a065d245a: Layer already exists |
| 23-Mar-2018 14:16:46 | f96e6b25195f: Layer already exists |
| 23-Mar-2018 14:16:46 | c56153825175: Layer already exists |
| 23-Mar-2018 14:16:46 | ae620432889d: Layer already exists |
| 23-Mar-2018 14:16:46 | a2022691bf95: Layer already exists |
| 23-Mar-2018 14:16:48 | 60ede1fb2a8a: Layer already exists |
| 23-Mar-2018 14:16:49 | browndog_v0.2.0: digest: sha256:47e23e0af3157d9f351c253834ab4ed60846325da8b80d2e5698db20dc7d0211 size: 3031 |
| 23-Mar-2018 14:16:49 | The push refers to a repository [docker.io/clowder/extractors-msc-monitor] |
| 23-Mar-2018 14:16:49 | ed92e5cb33ab: Preparing |
| 23-Mar-2018 14:16:49 | 60ede1fb2a8a: Preparing |
| 23-Mar-2018 14:16:49 | febb8bdc4437: Preparing |
| 23-Mar-2018 14:16:49 | 0334fab2f1cf: Preparing |
| 23-Mar-2018 14:16:49 | 0cdb02ac1d86: Preparing |
| 23-Mar-2018 14:16:49 | f2297bdfc824: Preparing |
| 23-Mar-2018 14:16:49 | 0fbe2bcb1bf9: Preparing |
| 23-Mar-2018 14:16:49 | 59669fcdd5eb: Preparing |
| 23-Mar-2018 14:16:49 | 7f7a065d245a: Preparing |
| 23-Mar-2018 14:16:49 | f2297bdfc824: Waiting |
| 23-Mar-2018 14:16:49 | 0fbe2bcb1bf9: Waiting |
| 23-Mar-2018 14:16:49 | 59669fcdd5eb: Waiting |
| 23-Mar-2018 14:16:49 | f96e6b25195f: Preparing |
| 23-Mar-2018 14:16:49 | c56153825175: Preparing |
| 23-Mar-2018 14:16:49 | ae620432889d: Preparing |
| 23-Mar-2018 14:16:49 | 7f7a065d245a: Waiting |
| 23-Mar-2018 14:16:49 | c56153825175: Waiting |
| 23-Mar-2018 14:16:49 | a2022691bf95: Preparing |
| 23-Mar-2018 14:16:49 | ae620432889d: Waiting |
| 23-Mar-2018 14:16:49 | a2022691bf95: Waiting |
| 23-Mar-2018 14:16:49 | 60ede1fb2a8a: Layer already exists |
| 23-Mar-2018 14:16:49 | febb8bdc4437: Layer already exists |
| 23-Mar-2018 14:16:49 | 0cdb02ac1d86: Layer already exists |
| 23-Mar-2018 14:16:49 | 0334fab2f1cf: Layer already exists |
| 23-Mar-2018 14:16:49 | ed92e5cb33ab: Layer already exists |
| 23-Mar-2018 14:16:49 | 59669fcdd5eb: Layer already exists |
| 23-Mar-2018 14:16:49 | 7f7a065d245a: Layer already exists |
| 23-Mar-2018 14:16:49 | 0fbe2bcb1bf9: Layer already exists |
| 23-Mar-2018 14:16:49 | f2297bdfc824: Layer already exists |
| 23-Mar-2018 14:16:50 | f96e6b25195f: Layer already exists |
| 23-Mar-2018 14:16:50 | ae620432889d: Layer already exists |
| 23-Mar-2018 14:16:50 | c56153825175: Layer already exists |
| 23-Mar-2018 14:16:50 | a2022691bf95: Layer already exists |
| 23-Mar-2018 14:16:50 | browndog_v0.3.0: digest: sha256:47e23e0af3157d9f351c253834ab4ed60846325da8b80d2e5698db20dc7d0211 size: 3031 |
| 23-Mar-2018 14:16:50 | The push refers to a repository [docker.io/clowder/extractors-msc-monitor] |
| 23-Mar-2018 14:16:50 | ed92e5cb33ab: Preparing |
| 23-Mar-2018 14:16:50 | 60ede1fb2a8a: Preparing |
| 23-Mar-2018 14:16:50 | febb8bdc4437: Preparing |
| 23-Mar-2018 14:16:50 | 0334fab2f1cf: Preparing |
| 23-Mar-2018 14:16:50 | 0cdb02ac1d86: Preparing |
| 23-Mar-2018 14:16:50 | f2297bdfc824: Preparing |
| 23-Mar-2018 14:16:50 | 0fbe2bcb1bf9: Preparing |
| 23-Mar-2018 14:16:50 | 59669fcdd5eb: Preparing |
| 23-Mar-2018 14:16:50 | 7f7a065d245a: Preparing |
| 23-Mar-2018 14:16:50 | f96e6b25195f: Preparing |
| 23-Mar-2018 14:16:50 | c56153825175: Preparing |
| 23-Mar-2018 14:16:50 | ae620432889d: Preparing |
| 23-Mar-2018 14:16:50 | a2022691bf95: Preparing |
| 23-Mar-2018 14:16:50 | f2297bdfc824: Waiting |
| 23-Mar-2018 14:16:50 | 0fbe2bcb1bf9: Waiting |
| 23-Mar-2018 14:16:50 | 59669fcdd5eb: Waiting |
| 23-Mar-2018 14:16:50 | c56153825175: Waiting |
| 23-Mar-2018 14:16:50 | ae620432889d: Waiting |
| 23-Mar-2018 14:16:50 | a2022691bf95: Waiting |
| 23-Mar-2018 14:16:50 | f96e6b25195f: Waiting |
| 23-Mar-2018 14:16:51 | 0cdb02ac1d86: Layer already exists |
| 23-Mar-2018 14:16:51 | ed92e5cb33ab: Layer already exists |
| 23-Mar-2018 14:16:51 | febb8bdc4437: Layer already exists |
| 23-Mar-2018 14:16:51 | 60ede1fb2a8a: Layer already exists |
| 23-Mar-2018 14:16:51 | 0334fab2f1cf: Layer already exists |
| 23-Mar-2018 14:16:51 | f2297bdfc824: Layer already exists |
| 23-Mar-2018 14:16:51 | 0fbe2bcb1bf9: Layer already exists |
| 23-Mar-2018 14:16:51 | f96e6b25195f: Layer already exists |
| 23-Mar-2018 14:16:51 | 7f7a065d245a: Layer already exists |
| 23-Mar-2018 14:16:51 | 59669fcdd5eb: Layer already exists |
| 23-Mar-2018 14:16:51 | c56153825175: Layer already exists |
| 23-Mar-2018 14:16:51 | ae620432889d: Layer already exists |
| 23-Mar-2018 14:16:51 | a2022691bf95: Layer already exists |
| 23-Mar-2018 14:16:51 | latest: digest: sha256:47e23e0af3157d9f351c253834ab4ed60846325da8b80d2e5698db20dc7d0211 size: 3031 |
| 23-Mar-2018 14:16:52 | Untagged: 14387:latest |
| 23-Mar-2018 14:16:52 | Sending build context to Docker daemon 12.1 MB |
| 23-Mar-2018 14:16:52 | |
| 23-Mar-2018 14:16:52 | Step 1/11 : FROM clowder/pyclowder:1 |
| 23-Mar-2018 14:16:52 | ---> d1a9e970ed30 |
| 23-Mar-2018 14:16:52 | Step 2/11 : MAINTAINER Yan Zhao <yanzhao3@illinois.edu> |
| 23-Mar-2018 14:16:52 | ---> Using cache |
| 23-Mar-2018 14:16:52 | ---> 95c36e1341c0 |
| 23-Mar-2018 14:16:52 | Step 3/11 : ENV RABBITMQ_URI "" RABBITMQ_EXCHANGE "clowder" RABBITMQ_VHOST "%2F" RABBITMQ_QUEUE "ncsa.msc.PhenotypeExtractor" MONGO_URI "" DB_USERNAME "" DB_PASSWORD "" MAIN_SCRIPT "extractor-Phenotype.py" |
| 23-Mar-2018 14:16:52 | ---> Using cache |
| 23-Mar-2018 14:16:52 | ---> db39494c9783 |
| 23-Mar-2018 14:16:52 | Step 4/11 : USER root |
| 23-Mar-2018 14:16:52 | ---> Using cache |
| 23-Mar-2018 14:16:52 | ---> b739392e4533 |
| 23-Mar-2018 14:16:52 | Step 5/11 : COPY requirements.txt /home/clowder/ |
| 23-Mar-2018 14:16:52 | ---> Using cache |
| 23-Mar-2018 14:16:52 | ---> cc4b4872c39c |
| 23-Mar-2018 14:16:52 | Step 6/11 : RUN pip install --upgrade pip |
| 23-Mar-2018 14:16:52 | ---> Using cache |
| 23-Mar-2018 14:16:52 | ---> c6c3ada9c712 |
| 23-Mar-2018 14:16:52 | Step 7/11 : RUN pip install -r /home/clowder/requirements.txt |
| 23-Mar-2018 14:16:52 | ---> Using cache |
| 23-Mar-2018 14:16:52 | ---> e9ca28db6010 |
| 23-Mar-2018 14:16:52 | Step 8/11 : USER clowder |
| 23-Mar-2018 14:16:52 | ---> Using cache |
| 23-Mar-2018 14:16:52 | ---> a6a402d64e8c |
| 23-Mar-2018 14:16:52 | Step 9/11 : COPY entrypoint.sh *.py *.json /home/clowder/ |
| 23-Mar-2018 14:16:52 | ---> Using cache |
| 23-Mar-2018 14:16:52 | ---> 710e4b23b6d7 |
| 23-Mar-2018 14:16:52 | Step 10/11 : ENTRYPOINT /home/clowder/entrypoint.sh |
| 23-Mar-2018 14:16:52 | ---> Using cache |
| 23-Mar-2018 14:16:52 | ---> 4dca45ac6a64 |
| 23-Mar-2018 14:16:52 | Step 11/11 : CMD extractor |
| 23-Mar-2018 14:16:52 | ---> Using cache |
| 23-Mar-2018 14:16:52 | ---> 7feb97bb3ef5 |
| 23-Mar-2018 14:16:53 | Successfully built 7feb97bb3ef5 |
| 23-Mar-2018 14:16:53 | The push refers to a repository [docker.io/clowder/extractors-msc-phenotype] |
| 23-Mar-2018 14:16:53 | c96d4277e65f: Preparing |
| 23-Mar-2018 14:16:53 | 47b44d3905b3: Preparing |
| 23-Mar-2018 14:16:53 | 71513dca0b72: Preparing |
| 23-Mar-2018 14:16:53 | 2a4defffaad8: Preparing |
| 23-Mar-2018 14:16:53 | 0cdb02ac1d86: Preparing |
| 23-Mar-2018 14:16:53 | f2297bdfc824: Preparing |
| 23-Mar-2018 14:16:53 | 0fbe2bcb1bf9: Preparing |
| 23-Mar-2018 14:16:53 | f2297bdfc824: Waiting |
| 23-Mar-2018 14:16:53 | 59669fcdd5eb: Preparing |
| 23-Mar-2018 14:16:53 | 7f7a065d245a: Preparing |
| 23-Mar-2018 14:16:53 | f96e6b25195f: Preparing |
| 23-Mar-2018 14:16:53 | 0fbe2bcb1bf9: Waiting |
| 23-Mar-2018 14:16:53 | c56153825175: Preparing |
| 23-Mar-2018 14:16:53 | ae620432889d: Preparing |
| 23-Mar-2018 14:16:53 | a2022691bf95: Preparing |
| 23-Mar-2018 14:16:53 | f96e6b25195f: Waiting |
| 23-Mar-2018 14:16:53 | 7f7a065d245a: Waiting |
| 23-Mar-2018 14:16:53 | 59669fcdd5eb: Waiting |
| 23-Mar-2018 14:16:53 | c56153825175: Waiting |
| 23-Mar-2018 14:16:53 | ae620432889d: Waiting |
| 23-Mar-2018 14:16:53 | a2022691bf95: Waiting |
| 23-Mar-2018 14:16:54 | 0cdb02ac1d86: Layer already exists |
| 23-Mar-2018 14:16:54 | 2a4defffaad8: Layer already exists |
| 23-Mar-2018 14:16:54 | f2297bdfc824: Layer already exists |
| 23-Mar-2018 14:16:54 | 47b44d3905b3: Layer already exists |
| 23-Mar-2018 14:16:54 | c96d4277e65f: Layer already exists |
| 23-Mar-2018 14:16:54 | 71513dca0b72: Layer already exists |
| 23-Mar-2018 14:16:54 | 0fbe2bcb1bf9: Layer already exists |
| 23-Mar-2018 14:16:54 | 59669fcdd5eb: Layer already exists |
| 23-Mar-2018 14:16:54 | 7f7a065d245a: Layer already exists |
| 23-Mar-2018 14:16:54 | f96e6b25195f: Layer already exists |
| 23-Mar-2018 14:16:54 | c56153825175: Layer already exists |
| 23-Mar-2018 14:16:54 | ae620432889d: Layer already exists |
| 23-Mar-2018 14:16:54 | a2022691bf95: Layer already exists |
| 23-Mar-2018 14:16:56 | browndog_v0.2.0: digest: sha256:34e500f77ac67683ceb18462d2fe4b2ba3d72bdac5abe635a219d2cf062b41b3 size: 3031 |
| 23-Mar-2018 14:16:56 | The push refers to a repository [docker.io/clowder/extractors-msc-phenotype] |
| 23-Mar-2018 14:16:56 | c96d4277e65f: Preparing |
| 23-Mar-2018 14:16:56 | 47b44d3905b3: Preparing |
| 23-Mar-2018 14:16:56 | 71513dca0b72: Preparing |
| 23-Mar-2018 14:16:56 | 2a4defffaad8: Preparing |
| 23-Mar-2018 14:16:56 | 0cdb02ac1d86: Preparing |
| 23-Mar-2018 14:16:56 | f2297bdfc824: Preparing |
| 23-Mar-2018 14:16:56 | 0fbe2bcb1bf9: Preparing |
| 23-Mar-2018 14:16:56 | 59669fcdd5eb: Preparing |
| 23-Mar-2018 14:16:56 | 7f7a065d245a: Preparing |
| 23-Mar-2018 14:16:56 | f96e6b25195f: Preparing |
| 23-Mar-2018 14:16:56 | c56153825175: Preparing |
| 23-Mar-2018 14:16:56 | ae620432889d: Preparing |
| 23-Mar-2018 14:16:56 | a2022691bf95: Preparing |
| 23-Mar-2018 14:16:56 | 7f7a065d245a: Waiting |
| 23-Mar-2018 14:16:56 | f96e6b25195f: Waiting |
| 23-Mar-2018 14:16:56 | ae620432889d: Waiting |
| 23-Mar-2018 14:16:56 | c56153825175: Waiting |
| 23-Mar-2018 14:16:56 | a2022691bf95: Waiting |
| 23-Mar-2018 14:16:56 | f2297bdfc824: Waiting |
| 23-Mar-2018 14:16:56 | 0fbe2bcb1bf9: Waiting |
| 23-Mar-2018 14:16:56 | 59669fcdd5eb: Waiting |
| 23-Mar-2018 14:16:56 | 0cdb02ac1d86: Layer already exists |
| 23-Mar-2018 14:16:56 | 47b44d3905b3: Layer already exists |
| 23-Mar-2018 14:16:56 | c96d4277e65f: Layer already exists |
| 23-Mar-2018 14:16:56 | 2a4defffaad8: Layer already exists |
| 23-Mar-2018 14:16:56 | 71513dca0b72: Layer already exists |
| 23-Mar-2018 14:16:56 | f2297bdfc824: Layer already exists |
| 23-Mar-2018 14:16:56 | 0fbe2bcb1bf9: Layer already exists |
| 23-Mar-2018 14:16:56 | 59669fcdd5eb: Layer already exists |
| 23-Mar-2018 14:16:56 | 7f7a065d245a: Layer already exists |
| 23-Mar-2018 14:16:56 | f96e6b25195f: Layer already exists |
| 23-Mar-2018 14:16:56 | c56153825175: Layer already exists |
| 23-Mar-2018 14:16:56 | ae620432889d: Layer already exists |
| 23-Mar-2018 14:16:57 | a2022691bf95: Layer already exists |
| 23-Mar-2018 14:16:57 | browndog_v0.3.0: digest: sha256:34e500f77ac67683ceb18462d2fe4b2ba3d72bdac5abe635a219d2cf062b41b3 size: 3031 |
| 23-Mar-2018 14:16:57 | The push refers to a repository [docker.io/clowder/extractors-msc-phenotype] |
| 23-Mar-2018 14:16:57 | c96d4277e65f: Preparing |
| 23-Mar-2018 14:16:57 | 47b44d3905b3: Preparing |
| 23-Mar-2018 14:16:57 | 71513dca0b72: Preparing |
| 23-Mar-2018 14:16:57 | 2a4defffaad8: Preparing |
| 23-Mar-2018 14:16:57 | 0cdb02ac1d86: Preparing |
| 23-Mar-2018 14:16:57 | f2297bdfc824: Preparing |
| 23-Mar-2018 14:16:57 | 0fbe2bcb1bf9: Preparing |
| 23-Mar-2018 14:16:57 | 59669fcdd5eb: Preparing |
| 23-Mar-2018 14:16:57 | 7f7a065d245a: Preparing |
| 23-Mar-2018 14:16:57 | f96e6b25195f: Preparing |
| 23-Mar-2018 14:16:57 | c56153825175: Preparing |
| 23-Mar-2018 14:16:57 | ae620432889d: Preparing |
| 23-Mar-2018 14:16:57 | a2022691bf95: Preparing |
| 23-Mar-2018 14:16:57 | 7f7a065d245a: Waiting |
| 23-Mar-2018 14:16:57 | f96e6b25195f: Waiting |
| 23-Mar-2018 14:16:57 | f2297bdfc824: Waiting |
| 23-Mar-2018 14:16:57 | 0fbe2bcb1bf9: Waiting |
| 23-Mar-2018 14:16:57 | c56153825175: Waiting |
| 23-Mar-2018 14:16:57 | a2022691bf95: Waiting |
| 23-Mar-2018 14:16:57 | ae620432889d: Waiting |
| 23-Mar-2018 14:16:57 | 59669fcdd5eb: Waiting |
| 23-Mar-2018 14:16:57 | c96d4277e65f: Layer already exists |
| 23-Mar-2018 14:16:57 | 0cdb02ac1d86: Layer already exists |
| 23-Mar-2018 14:16:57 | 71513dca0b72: Layer already exists |
| 23-Mar-2018 14:16:57 | 2a4defffaad8: Layer already exists |
| 23-Mar-2018 14:16:57 | 47b44d3905b3: Layer already exists |
| 23-Mar-2018 14:16:58 | f2297bdfc824: Layer already exists |
| 23-Mar-2018 14:16:58 | 7f7a065d245a: Layer already exists |
| 23-Mar-2018 14:16:58 | 59669fcdd5eb: Layer already exists |
| 23-Mar-2018 14:16:58 | 0fbe2bcb1bf9: Layer already exists |
| 23-Mar-2018 14:16:58 | f96e6b25195f: Layer already exists |
| 23-Mar-2018 14:16:58 | c56153825175: Layer already exists |
| 23-Mar-2018 14:16:58 | ae620432889d: Layer already exists |
| 23-Mar-2018 14:16:58 | a2022691bf95: Layer already exists |
| 23-Mar-2018 14:16:58 | latest: digest: sha256:34e500f77ac67683ceb18462d2fe4b2ba3d72bdac5abe635a219d2cf062b41b3 size: 3031 |
| 23-Mar-2018 14:16:58 | Untagged: 14387:latest |
| 23-Mar-2018 14:16:58 | Finished task 'docker build' with result: Success |
| 23-Mar-2018 14:16:58 | Running post build plugin 'Docker Container Cleanup' |
| 23-Mar-2018 14:16:58 | Running post build plugin 'NCover Results Collector' |
| 23-Mar-2018 14:16:58 | Running post build plugin 'Clover Results Collector' |
| 23-Mar-2018 14:16:58 | Running post build plugin 'npm Cache Cleanup' |
| 23-Mar-2018 14:16:58 | Running post build plugin 'Artifact Copier' |
| 23-Mar-2018 14:16:58 | Finalising the build... |
| 23-Mar-2018 14:16:58 | Stopping timer. |
| 23-Mar-2018 14:16:58 | Build CATS-MSC-JOB1-34 completed. |
| 23-Mar-2018 14:16:58 | Running on server: post build plugin 'NCover Results Collector' |
| 23-Mar-2018 14:16:58 | Running on server: post build plugin 'Build Hanging Detection Configuration' |
| 23-Mar-2018 14:16:58 | Running on server: post build plugin 'Clover Delta Calculator' |
| 23-Mar-2018 14:16:58 | Running on server: post build plugin 'Maven Dependencies Postprocessor' |
| 23-Mar-2018 14:16:58 | All post build plugins have finished |
| 23-Mar-2018 14:16:58 | Generating build results summary... |
| 23-Mar-2018 14:16:58 | Saving build results to disk... |
| 23-Mar-2018 14:16:58 | Logging substituted variables... |
| 23-Mar-2018 14:16:58 | Indexing build results... |
| 23-Mar-2018 14:16:58 | Finished building CATS-MSC-JOB1-34. |