Build: #36 was successful
Job: Default Job was successful
Build log
The build generated 751 lines of output. Download or view full build log.
| 18-Apr-2018 21:44:27 | Build Clowder - extractors-msc - Default Job #36 (CATS-MSC-JOB1-36) started building on agent buildserver-1.os.ncsa.edu |
| 18-Apr-2018 21:44:27 | Remote agent on host buildserver-1.os.ncsa.edu |
| 18-Apr-2018 21:44:27 | Build working directory is /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-MSC-JOB1 |
| 18-Apr-2018 21:44:27 | Executing build Clowder - extractors-msc - Default Job #36 (CATS-MSC-JOB1-36) |
| 18-Apr-2018 21:44:27 | Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout' |
| 18-Apr-2018 21:44:27 | Checking out into /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-MSC-JOB1 |
| 18-Apr-2018 21:44:27 | Updating source code to revision: 6aaab3692bc88bb1c0016521723c45399615c5f2 |
| 18-Apr-2018 21:44:27 | Fetching 'refs/heads/master' from 'ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-msc.git'. Will try to do a shallow fetch. |
| 18-Apr-2018 21:44:27 | Warning: Permanently added '[127.0.0.1]:34990' (RSA) to the list of known hosts. |
| 18-Apr-2018 21:44:27 | Checking out revision 6aaab3692bc88bb1c0016521723c45399615c5f2. |
| 18-Apr-2018 21:44:27 | Already on 'master' |
| 18-Apr-2018 21:44:27 | Updated source code to revision: 6aaab3692bc88bb1c0016521723c45399615c5f2 |
| 18-Apr-2018 21:44:27 | Finished task 'Checkout Default Repository' with result: Success |
| 18-Apr-2018 21:44:27 | Running pre-build action: VCS Version Collector |
| 18-Apr-2018 21:44:27 | Starting task 'docker build' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script' |
| 18-Apr-2018 21:44:27 | Beginning to execute external process for build 'Clowder - extractors-msc - Default Job #36 (CATS-MSC-JOB1-36)' ... running command line: /bin/sh docker.sh ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-MSC-JOB1 ... using extra environment variables: bamboo_planRepository_1_branch=master bamboo_capability_system_builder_command_npm_6=/home/bamboo/node-v6.9.1/bin/npm bamboo_capability_system_builder_command_buckminster_4_3=/home/bamboo/buckminster-4.3/buckminster bamboo_capability_system_builder_node_Node_js_v6_9_1=/home/bamboo/node-v6.9.1/bin/node bamboo_dependency_parent_0=CATS-PYC2-71 bamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster bamboo_dependency_parent_total=1 bamboo_planRepository_1_branchDisplayName=master bamboo_repository_revision_number=6aaab3692bc88bb1c0016521723c45399615c5f2 bamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-MSC-JOB1-36 bamboo_repository_127172627_branch_name=master bamboo_repository_127172627_git_branch=master bamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build bamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-MSC-JOB1 bamboo_planRepository_1_name=extractors-msc bamboo_buildKey=CATS-MSC-JOB1 bamboo_capability_system_os=linux bamboo_shortPlanName=extractors-msc bamboo_planRepository_name=extractors-msc bamboo_repository_127172627_git_username= bamboo_buildNumber=36 bamboo_shortJobName=Default Job bamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-MSC-JOB1-36 bamboo_planRepository_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-msc.git bamboo_agentId=140673027 bamboo_planName=Clowder - extractors-msc bamboo_repository_127172627_revision_number=6aaab3692bc88bb1c0016521723c45399615c5f2 bamboo_shortPlanKey=MSC bamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt bamboo_capability_system_builder_node_Node_js_v0_10_28=/home/bamboo/node-v0.10.28/bin/node bamboo_shortJobKey=JOB1 bamboo_planRepository_revision=6aaab3692bc88bb1c0016521723c45399615c5f2 bamboo_buildTimeStamp=2018-04-18T21:15:51.782-05:00 bamboo_repository_previous_revision_number=6aaab3692bc88bb1c0016521723c45399615c5f2 bamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm bamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1 bamboo_planRepository_previousRevision=6aaab3692bc88bb1c0016521723c45399615c5f2 bamboo_repository_git_branch=master bamboo_buildResultKey=CATS-MSC-JOB1-36 bamboo_repository_branch_name=master bamboo_buildPlanName=Clowder - extractors-msc - Default Job bamboo_planRepository_1_revision=6aaab3692bc88bb1c0016521723c45399615c5f2 bamboo_capability_system_builder_command_python3=/usr/bin/python3 bamboo_repository_name=extractors-msc bamboo_buildFailed=false bamboo_capability_system_docker_executable=/usr/bin/docker bamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt bamboo_planRepository_branch=master bamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir bamboo_capability_system_git_executable=/usr/bin/git bamboo_repository_git_username= bamboo_planRepository_1_previousRevision=6aaab3692bc88bb1c0016521723c45399615c5f2 bamboo_capability_system_builder_sbt_SBT_0_13_13=/home/bamboo/sbt-0.13.13 bamboo_repository_127172627_name=extractors-msc bamboo_planRepository_branchDisplayName=master bamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs bamboo_planRepository_1_type=bbserver bamboo_planRepository_branchName=master bamboo_capability_system_builder_command_python2_7=/usr/bin/python2.7 bamboo_capability_system_hostname=buildserver-1 bamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.8.0_66 bamboo_capability_system_software_mongo=/usr/bin/mongo bamboo_plan_storageTag=plan-126976035 bamboo_hg_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_hg-repositories-cache bamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs bamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl bamboo_capability_system_jdk_JDK_1_8_0_66=/home/bamboo/jdk1.8.0_66 bamboo_planRepository_1_username= bamboo_planRepository_type=bbserver bamboo_git_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_git-repositories-cache bamboo_repository_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-msc.git bamboo_repository_127172627_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-msc.git bamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node bamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4 bamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.3.9 bamboo_tmp_directory=/home/bamboo/bamboo-agent-home/temp bamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-MSC-JOB1 bamboo_planKey=CATS-MSC bamboo_planRepository_1_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-msc.git bamboo_planRepository_username= bamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_66 bamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41 bamboo_capability_system_builder_command_mkcrx=/home/bamboo/mkcrx/mkcrx.sh bamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60 bamboo_repository_127172627_previous_revision_number=6aaab3692bc88bb1c0016521723c45399615c5f2 bamboo_planRepository_1_branchName=master |
| 18-Apr-2018 21:44:27 | Sending build context to Docker daemon 2.284MB |
| 18-Apr-2018 21:44:27 | |
| 18-Apr-2018 21:44:27 | Step 1/11 : FROM clowder/pyclowder:1 |
| 18-Apr-2018 21:44:27 | ---> d1a9e970ed30 |
| 18-Apr-2018 21:44:27 | Step 2/11 : MAINTAINER Rob Kooper <kooper@illinois.edu> |
| 18-Apr-2018 21:44:27 | ---> Using cache |
| 18-Apr-2018 21:44:27 | ---> 199b32438235 |
| 18-Apr-2018 21:44:27 | Step 3/11 : VOLUME /matlab |
| 18-Apr-2018 21:44:27 | ---> Using cache |
| 18-Apr-2018 21:44:27 | ---> 7fada06ede8a |
| 18-Apr-2018 21:44:27 | Step 4/11 : ENV RABBITMQ_URI="" RABBITMQ_EXCHANGE="clowder" RABBITMQ_VHOST="%2F" RABBITMQ_QUEUE="ncsa.msc.diagnosis" MATLAB_BINARY="/matlab/bin/matlab" MAIN_SCRIPT="diagnosis.py" |
| 18-Apr-2018 21:44:27 | ---> Using cache |
| 18-Apr-2018 21:44:27 | ---> 16acceb9cc21 |
| 18-Apr-2018 21:44:27 | Step 5/11 : USER root |
| 18-Apr-2018 21:44:27 | ---> Using cache |
| 18-Apr-2018 21:44:27 | ---> b37ef4634ddb |
| 18-Apr-2018 21:44:27 | Step 6/11 : RUN pip install --upgrade pip |
| 18-Apr-2018 21:44:27 | ---> Using cache |
| 18-Apr-2018 21:44:27 | ---> 7821086222d9 |
| 18-Apr-2018 21:44:27 | Step 7/11 : RUN apt-get -qq -y update && apt-get -y install libxext6 libxmu6 libxt6 wget && mkdir -p /matlab && rm -rf /var/lib/apt/lists/* |
| 18-Apr-2018 21:44:27 | ---> Using cache |
| 18-Apr-2018 21:44:27 | ---> 3b85732d8c98 |
| 18-Apr-2018 21:44:27 | Step 8/11 : USER clowder |
| 18-Apr-2018 21:44:27 | ---> Using cache |
| 18-Apr-2018 21:44:27 | ---> d80b9bd311d3 |
| 18-Apr-2018 21:44:27 | Step 9/11 : COPY entrypoint.sh *.py *.m data/*.mat *.json /home/clowder/ |
| 18-Apr-2018 21:44:27 | ---> Using cache |
| 18-Apr-2018 21:44:27 | ---> 8b415eba15fc |
| 18-Apr-2018 21:44:27 | Step 10/11 : ENTRYPOINT ["/home/clowder/entrypoint.sh"] |
| 18-Apr-2018 21:44:27 | ---> Using cache |
| 18-Apr-2018 21:44:27 | ---> 492d3d285daa |
| 18-Apr-2018 21:44:27 | Step 11/11 : CMD ["extractor"] |
| 18-Apr-2018 21:44:27 | ---> Using cache |
| 18-Apr-2018 21:44:27 | ---> 48c1c411b9b7 |
| 18-Apr-2018 21:44:27 | Successfully built 48c1c411b9b7 |
| 18-Apr-2018 21:44:27 | Successfully tagged 22210:latest |
| 18-Apr-2018 21:44:28 | The push refers to repository [docker.io/clowder/extractors-msc-kidney] |
| 18-Apr-2018 21:44:28 | a2ffe2e4f347: Preparing |
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| 18-Apr-2018 21:44:28 | 7f7a065d245a: Waiting |
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| 18-Apr-2018 21:44:28 | ae620432889d: Preparing |
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| 18-Apr-2018 21:44:28 | c56153825175: Waiting |
| 18-Apr-2018 21:44:28 | ae620432889d: Waiting |
| 18-Apr-2018 21:44:28 | a2022691bf95: Waiting |
| 18-Apr-2018 21:44:28 | 0cdb02ac1d86: Layer already exists |
| 18-Apr-2018 21:44:28 | f2297bdfc824: Layer already exists |
| 18-Apr-2018 21:44:28 | a2ffe2e4f347: Layer already exists |
| 18-Apr-2018 21:44:28 | 80d567800b34: Layer already exists |
| 18-Apr-2018 21:44:28 | 0fbe2bcb1bf9: Layer already exists |
| 18-Apr-2018 21:44:28 | 41c6ef0756f7: Layer already exists |
| 18-Apr-2018 21:44:33 | ae620432889d: Layer already exists |
| 18-Apr-2018 21:44:33 | c56153825175: Layer already exists |
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| 18-Apr-2018 21:44:33 | f96e6b25195f: Layer already exists |
| 18-Apr-2018 21:44:33 | 7f7a065d245a: Layer already exists |
| 18-Apr-2018 21:44:33 | a2022691bf95: Layer already exists |
| 18-Apr-2018 21:44:34 | browndog_v0.2.0: digest: sha256:6b03848eec43baa01d47e32c994b064d9ea0cc3b081dfce35dc2cd1053da45e2 size: 2826 |
| 18-Apr-2018 21:44:35 | The push refers to repository [docker.io/clowder/extractors-msc-kidney] |
| 18-Apr-2018 21:44:40 | a2ffe2e4f347: Preparing |
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| 18-Apr-2018 21:44:40 | a2022691bf95: Preparing |
| 18-Apr-2018 21:44:40 | 0fbe2bcb1bf9: Waiting |
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| 18-Apr-2018 21:44:40 | 7f7a065d245a: Waiting |
| 18-Apr-2018 21:44:40 | ae620432889d: Waiting |
| 18-Apr-2018 21:44:40 | a2022691bf95: Waiting |
| 18-Apr-2018 21:44:40 | 0cdb02ac1d86: Layer already exists |
| 18-Apr-2018 21:44:40 | 41c6ef0756f7: Layer already exists |
| 18-Apr-2018 21:44:40 | 80d567800b34: Layer already exists |
| 18-Apr-2018 21:44:40 | f2297bdfc824: Layer already exists |
| 18-Apr-2018 21:44:40 | a2ffe2e4f347: Layer already exists |
| 18-Apr-2018 21:44:45 | c56153825175: Layer already exists |
| 18-Apr-2018 21:44:45 | 0fbe2bcb1bf9: Layer already exists |
| 18-Apr-2018 21:44:45 | 59669fcdd5eb: Layer already exists |
| 18-Apr-2018 21:44:45 | f96e6b25195f: Layer already exists |
| 18-Apr-2018 21:44:45 | 7f7a065d245a: Layer already exists |
| 18-Apr-2018 21:44:45 | ae620432889d: Layer already exists |
| 18-Apr-2018 21:44:45 | a2022691bf95: Layer already exists |
| 18-Apr-2018 21:44:46 | browndog_v0.3.0: digest: sha256:6b03848eec43baa01d47e32c994b064d9ea0cc3b081dfce35dc2cd1053da45e2 size: 2826 |
| 18-Apr-2018 21:44:46 | The push refers to repository [docker.io/clowder/extractors-msc-kidney] |
| 18-Apr-2018 21:44:46 | a2ffe2e4f347: Preparing |
| 18-Apr-2018 21:44:46 | 41c6ef0756f7: Preparing |
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| 18-Apr-2018 21:44:46 | 7f7a065d245a: Waiting |
| 18-Apr-2018 21:44:46 | f96e6b25195f: Waiting |
| 18-Apr-2018 21:44:46 | c56153825175: Waiting |
| 18-Apr-2018 21:44:46 | ae620432889d: Waiting |
| 18-Apr-2018 21:44:46 | a2022691bf95: Waiting |
| 18-Apr-2018 21:44:46 | 0fbe2bcb1bf9: Waiting |
| 18-Apr-2018 21:44:46 | 59669fcdd5eb: Waiting |
| 18-Apr-2018 21:44:46 | 41c6ef0756f7: Layer already exists |
| 18-Apr-2018 21:44:46 | 0cdb02ac1d86: Layer already exists |
| 18-Apr-2018 21:44:46 | a2ffe2e4f347: Layer already exists |
| 18-Apr-2018 21:44:46 | f2297bdfc824: Layer already exists |
| 18-Apr-2018 21:44:47 | 59669fcdd5eb: Layer already exists |
| 18-Apr-2018 21:44:47 | 7f7a065d245a: Layer already exists |
| 18-Apr-2018 21:44:47 | 0fbe2bcb1bf9: Layer already exists |
| 18-Apr-2018 21:44:47 | f96e6b25195f: Layer already exists |
| 18-Apr-2018 21:44:47 | 80d567800b34: Layer already exists |
| 18-Apr-2018 21:44:47 | ae620432889d: Layer already exists |
| 18-Apr-2018 21:44:47 | c56153825175: Layer already exists |
| 18-Apr-2018 21:44:47 | a2022691bf95: Layer already exists |
| 18-Apr-2018 21:44:47 | latest: digest: sha256:6b03848eec43baa01d47e32c994b064d9ea0cc3b081dfce35dc2cd1053da45e2 size: 2826 |
| 18-Apr-2018 21:44:47 | Untagged: 22210:latest |
| 18-Apr-2018 21:44:47 | Sending build context to Docker daemon 67.07kB |
| 18-Apr-2018 21:44:47 | |
| 18-Apr-2018 21:44:47 | Step 1/11 : FROM clowder/pyclowder:1 |
| 18-Apr-2018 21:44:47 | ---> d1a9e970ed30 |
| 18-Apr-2018 21:44:47 | Step 2/11 : MAINTAINER Yan Zhao <yanzhao3@illinois.edu> |
| 18-Apr-2018 21:44:47 | ---> Using cache |
| 18-Apr-2018 21:44:47 | ---> 46bf81116550 |
| 18-Apr-2018 21:44:47 | Step 3/11 : ENV RABBITMQ_URI="" RABBITMQ_EXCHANGE="clowder" RABBITMQ_VHOST="%2F" RABBITMQ_QUEUE="ncsa.msc.IsletExtractor" MONGO_URI="" DB_USERNAME="" DB_PASSWORD="" MAIN_SCRIPT="extractor-Islet.py" |
| 18-Apr-2018 21:44:47 | ---> Using cache |
| 18-Apr-2018 21:44:47 | ---> dd2ad7a1b589 |
| 18-Apr-2018 21:44:47 | Step 4/11 : USER root |
| 18-Apr-2018 21:44:47 | ---> Using cache |
| 18-Apr-2018 21:44:47 | ---> 91c3848d3f31 |
| 18-Apr-2018 21:44:47 | Step 5/11 : COPY requirements.txt /home/clowder/ |
| 18-Apr-2018 21:44:47 | ---> Using cache |
| 18-Apr-2018 21:44:47 | ---> c75c51142d7c |
| 18-Apr-2018 21:44:47 | Step 6/11 : RUN pip install --upgrade pip |
| 18-Apr-2018 21:44:47 | ---> Using cache |
| 18-Apr-2018 21:44:47 | ---> 1c0d3f87f103 |
| 18-Apr-2018 21:44:47 | Step 7/11 : RUN pip install -r /home/clowder/requirements.txt |
| 18-Apr-2018 21:44:47 | ---> Using cache |
| 18-Apr-2018 21:44:47 | ---> cf2cf73f0483 |
| 18-Apr-2018 21:44:47 | Step 8/11 : USER clowder |
| 18-Apr-2018 21:44:47 | ---> Using cache |
| 18-Apr-2018 21:44:47 | ---> f3a8548c2226 |
| 18-Apr-2018 21:44:47 | Step 9/11 : COPY entrypoint.sh *.py *.json /home/clowder/ |
| 18-Apr-2018 21:44:47 | ---> Using cache |
| 18-Apr-2018 21:44:47 | ---> bf7cda114213 |
| 18-Apr-2018 21:44:47 | Step 10/11 : ENTRYPOINT ["/home/clowder/entrypoint.sh"] |
| 18-Apr-2018 21:44:47 | ---> Using cache |
| 18-Apr-2018 21:44:47 | ---> 11ec3b401994 |
| 18-Apr-2018 21:44:47 | Step 11/11 : CMD ["extractor"] |
| 18-Apr-2018 21:44:47 | ---> Using cache |
| 18-Apr-2018 21:44:47 | ---> e6e961517398 |
| 18-Apr-2018 21:44:47 | Successfully built e6e961517398 |
| 18-Apr-2018 21:44:48 | Successfully tagged 22210:latest |
| 18-Apr-2018 21:44:48 | The push refers to repository [docker.io/clowder/extractors-msc-islet] |
| 18-Apr-2018 21:44:48 | 82cd06ddb546: Preparing |
| 18-Apr-2018 21:44:48 | 72da6a0b7931: Preparing |
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| 18-Apr-2018 21:44:48 | a2022691bf95: Preparing |
| 18-Apr-2018 21:44:48 | f2297bdfc824: Waiting |
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| 18-Apr-2018 21:44:48 | a2022691bf95: Waiting |
| 18-Apr-2018 21:44:48 | 0cdb02ac1d86: Layer already exists |
| 18-Apr-2018 21:44:48 | 273abc9933de: Layer already exists |
| 18-Apr-2018 21:44:48 | f2297bdfc824: Layer already exists |
| 18-Apr-2018 21:44:48 | 72da6a0b7931: Layer already exists |
| 18-Apr-2018 21:44:48 | 82cd06ddb546: Layer already exists |
| 18-Apr-2018 21:44:48 | cd077f8b5a6d: Layer already exists |
| 18-Apr-2018 21:44:48 | 0fbe2bcb1bf9: Layer already exists |
| 18-Apr-2018 21:44:48 | 59669fcdd5eb: Layer already exists |
| 18-Apr-2018 21:44:49 | 7f7a065d245a: Layer already exists |
| 18-Apr-2018 21:44:54 | f96e6b25195f: Layer already exists |
| 18-Apr-2018 21:44:54 | c56153825175: Layer already exists |
| 18-Apr-2018 21:44:54 | ae620432889d: Layer already exists |
| 18-Apr-2018 21:44:54 | a2022691bf95: Layer already exists |
| 18-Apr-2018 21:44:54 | browndog_v0.2.0: digest: sha256:5da9646126fd0ebca15b3a4131f98734229fb7e1a42207650f836ae2dd43ca38 size: 3031 |
| 18-Apr-2018 21:44:56 | The push refers to repository [docker.io/clowder/extractors-msc-islet] |
| 18-Apr-2018 21:44:56 | 82cd06ddb546: Preparing |
| 18-Apr-2018 21:44:56 | 72da6a0b7931: Preparing |
| 18-Apr-2018 21:44:56 | cd077f8b5a6d: Preparing |
| 18-Apr-2018 21:44:56 | 273abc9933de: Preparing |
| 18-Apr-2018 21:44:56 | 0cdb02ac1d86: Preparing |
| 18-Apr-2018 21:44:56 | f2297bdfc824: Preparing |
| 18-Apr-2018 21:44:56 | 0fbe2bcb1bf9: Preparing |
| 18-Apr-2018 21:44:56 | 59669fcdd5eb: Preparing |
| 18-Apr-2018 21:44:56 | 7f7a065d245a: Preparing |
| 18-Apr-2018 21:44:56 | f96e6b25195f: Preparing |
| 18-Apr-2018 21:44:56 | c56153825175: Preparing |
| 18-Apr-2018 21:44:56 | ae620432889d: Preparing |
| 18-Apr-2018 21:44:56 | a2022691bf95: Preparing |
| 18-Apr-2018 21:44:56 | f2297bdfc824: Waiting |
| 18-Apr-2018 21:44:56 | 0fbe2bcb1bf9: Waiting |
| 18-Apr-2018 21:44:56 | 59669fcdd5eb: Waiting |
| 18-Apr-2018 21:44:56 | 7f7a065d245a: Waiting |
| 18-Apr-2018 21:44:56 | f96e6b25195f: Waiting |
| 18-Apr-2018 21:44:56 | c56153825175: Waiting |
| 18-Apr-2018 21:44:56 | ae620432889d: Waiting |
| 18-Apr-2018 21:44:56 | a2022691bf95: Waiting |
| 18-Apr-2018 21:44:56 | 82cd06ddb546: Layer already exists |
| 18-Apr-2018 21:44:56 | 0cdb02ac1d86: Layer already exists |
| 18-Apr-2018 21:44:56 | 72da6a0b7931: Layer already exists |
| 18-Apr-2018 21:44:56 | cd077f8b5a6d: Layer already exists |
| 18-Apr-2018 21:44:56 | 273abc9933de: Layer already exists |
| 18-Apr-2018 21:44:56 | f2297bdfc824: Layer already exists |
| 18-Apr-2018 21:44:56 | 7f7a065d245a: Layer already exists |
| 18-Apr-2018 21:44:56 | 59669fcdd5eb: Layer already exists |
| 18-Apr-2018 21:44:56 | 0fbe2bcb1bf9: Layer already exists |
| 18-Apr-2018 21:44:56 | f96e6b25195f: Layer already exists |
| 18-Apr-2018 21:44:56 | c56153825175: Layer already exists |
| 18-Apr-2018 21:44:57 | ae620432889d: Layer already exists |
| 18-Apr-2018 21:44:57 | a2022691bf95: Layer already exists |
| 18-Apr-2018 21:44:57 | browndog_v0.3.0: digest: sha256:5da9646126fd0ebca15b3a4131f98734229fb7e1a42207650f836ae2dd43ca38 size: 3031 |
| 18-Apr-2018 21:44:57 | The push refers to repository [docker.io/clowder/extractors-msc-islet] |
| 18-Apr-2018 21:44:57 | 82cd06ddb546: Preparing |
| 18-Apr-2018 21:44:57 | 72da6a0b7931: Preparing |
| 18-Apr-2018 21:44:57 | cd077f8b5a6d: Preparing |
| 18-Apr-2018 21:44:57 | 273abc9933de: Preparing |
| 18-Apr-2018 21:44:57 | 0cdb02ac1d86: Preparing |
| 18-Apr-2018 21:44:57 | f2297bdfc824: Preparing |
| 18-Apr-2018 21:44:57 | 0fbe2bcb1bf9: Preparing |
| 18-Apr-2018 21:44:57 | 59669fcdd5eb: Preparing |
| 18-Apr-2018 21:44:57 | 7f7a065d245a: Preparing |
| 18-Apr-2018 21:44:57 | f96e6b25195f: Preparing |
| 18-Apr-2018 21:44:57 | c56153825175: Preparing |
| 18-Apr-2018 21:44:57 | ae620432889d: Preparing |
| 18-Apr-2018 21:44:57 | a2022691bf95: Preparing |
| 18-Apr-2018 21:44:57 | 59669fcdd5eb: Waiting |
| 18-Apr-2018 21:44:57 | 7f7a065d245a: Waiting |
| 18-Apr-2018 21:44:57 | f96e6b25195f: Waiting |
| 18-Apr-2018 21:44:57 | c56153825175: Waiting |
| 18-Apr-2018 21:44:57 | ae620432889d: Waiting |
| 18-Apr-2018 21:44:57 | a2022691bf95: Waiting |
| 18-Apr-2018 21:44:57 | f2297bdfc824: Waiting |
| 18-Apr-2018 21:44:57 | 0fbe2bcb1bf9: Waiting |
| 18-Apr-2018 21:44:58 | 0cdb02ac1d86: Layer already exists |
| 18-Apr-2018 21:44:58 | 72da6a0b7931: Layer already exists |
| 18-Apr-2018 21:44:58 | 82cd06ddb546: Layer already exists |
| 18-Apr-2018 21:44:58 | 273abc9933de: Layer already exists |
| 18-Apr-2018 21:44:58 | cd077f8b5a6d: Layer already exists |
| 18-Apr-2018 21:44:58 | 59669fcdd5eb: Layer already exists |
| 18-Apr-2018 21:44:58 | 7f7a065d245a: Layer already exists |
| 18-Apr-2018 21:44:58 | 0fbe2bcb1bf9: Layer already exists |
| 18-Apr-2018 21:44:58 | f2297bdfc824: Layer already exists |
| 18-Apr-2018 21:44:58 | f96e6b25195f: Layer already exists |
| 18-Apr-2018 21:44:58 | ae620432889d: Layer already exists |
| 18-Apr-2018 21:45:03 | c56153825175: Layer already exists |
| 18-Apr-2018 21:45:03 | a2022691bf95: Layer already exists |
| 18-Apr-2018 21:45:03 | latest: digest: sha256:5da9646126fd0ebca15b3a4131f98734229fb7e1a42207650f836ae2dd43ca38 size: 3031 |
| 18-Apr-2018 21:45:03 | Untagged: 22210:latest |
| 18-Apr-2018 21:45:04 | Sending build context to Docker daemon 66.05kB |
| 18-Apr-2018 21:45:04 | |
| 18-Apr-2018 21:45:04 | Step 1/11 : FROM clowder/pyclowder:1 |
| 18-Apr-2018 21:45:04 | ---> d1a9e970ed30 |
| 18-Apr-2018 21:45:04 | Step 2/11 : MAINTAINER Yan Zhao <yanzhao3@illinois.edu> |
| 18-Apr-2018 21:45:04 | ---> Using cache |
| 18-Apr-2018 21:45:04 | ---> 46bf81116550 |
| 18-Apr-2018 21:45:04 | Step 3/11 : ENV RABBITMQ_URI="" RABBITMQ_EXCHANGE="clowder" RABBITMQ_VHOST="%2F" RABBITMQ_QUEUE="ncsa.msc.ChemCBCExtractor" MONGO_URI="" DB_USERNAME="" DB_PASSWORD="" MAIN_SCRIPT="extractor-Chem.py" |
| 18-Apr-2018 21:45:04 | ---> Using cache |
| 18-Apr-2018 21:45:04 | ---> d4b5f9ca7750 |
| 18-Apr-2018 21:45:04 | Step 4/11 : USER root |
| 18-Apr-2018 21:45:04 | ---> Using cache |
| 18-Apr-2018 21:45:04 | ---> a99230797089 |
| 18-Apr-2018 21:45:04 | Step 5/11 : COPY requirements.txt /home/clowder/ |
| 18-Apr-2018 21:45:04 | ---> Using cache |
| 18-Apr-2018 21:45:04 | ---> 065a544b0599 |
| 18-Apr-2018 21:45:04 | Step 6/11 : RUN pip install --upgrade pip |
| 18-Apr-2018 21:45:04 | ---> Using cache |
| 18-Apr-2018 21:45:04 | ---> df6d2e7d1130 |
| 18-Apr-2018 21:45:04 | Step 7/11 : RUN pip install -r /home/clowder/requirements.txt |
| 18-Apr-2018 21:45:04 | ---> Using cache |
| 18-Apr-2018 21:45:04 | ---> 4de36593cd66 |
| 18-Apr-2018 21:45:04 | Step 8/11 : USER clowder |
| 18-Apr-2018 21:45:04 | ---> Using cache |
| 18-Apr-2018 21:45:04 | ---> 74b4d587dc9f |
| 18-Apr-2018 21:45:04 | Step 9/11 : COPY entrypoint.sh *.py *.json /home/clowder/ |
| 18-Apr-2018 21:45:04 | ---> Using cache |
| 18-Apr-2018 21:45:04 | ---> d386756a41cd |
| 18-Apr-2018 21:45:04 | Step 10/11 : ENTRYPOINT ["/home/clowder/entrypoint.sh"] |
| 18-Apr-2018 21:45:04 | ---> Using cache |
| 18-Apr-2018 21:45:04 | ---> 452106dfbd0f |
| 18-Apr-2018 21:45:04 | Step 11/11 : CMD ["extractor"] |
| 18-Apr-2018 21:45:04 | ---> Using cache |
| 18-Apr-2018 21:45:04 | ---> 1f0d0a7da8dd |
| 18-Apr-2018 21:45:04 | Successfully built 1f0d0a7da8dd |
| 18-Apr-2018 21:45:04 | Successfully tagged 22210:latest |
| 18-Apr-2018 21:45:04 | The push refers to repository [docker.io/clowder/extractors-msc-chemcbc] |
| 18-Apr-2018 21:45:04 | 9ffdd3dc6673: Preparing |
| 18-Apr-2018 21:45:04 | 695eaee0b84c: Preparing |
| 18-Apr-2018 21:45:04 | 4685a92e073c: Preparing |
| 18-Apr-2018 21:45:04 | 1cd7cbd2febc: Preparing |
| 18-Apr-2018 21:45:04 | 0cdb02ac1d86: Preparing |
| 18-Apr-2018 21:45:04 | f2297bdfc824: Preparing |
| 18-Apr-2018 21:45:04 | 0fbe2bcb1bf9: Preparing |
| 18-Apr-2018 21:45:04 | 59669fcdd5eb: Preparing |
| 18-Apr-2018 21:45:04 | 7f7a065d245a: Preparing |
| 18-Apr-2018 21:45:04 | f96e6b25195f: Preparing |
| 18-Apr-2018 21:45:04 | c56153825175: Preparing |
| 18-Apr-2018 21:45:04 | ae620432889d: Preparing |
| 18-Apr-2018 21:45:04 | a2022691bf95: Preparing |
| 18-Apr-2018 21:45:04 | 59669fcdd5eb: Waiting |
| 18-Apr-2018 21:45:04 | 7f7a065d245a: Waiting |
| 18-Apr-2018 21:45:04 | f96e6b25195f: Waiting |
| 18-Apr-2018 21:45:04 | c56153825175: Waiting |
| 18-Apr-2018 21:45:04 | ae620432889d: Waiting |
| 18-Apr-2018 21:45:04 | a2022691bf95: Waiting |
| 18-Apr-2018 21:45:04 | 0fbe2bcb1bf9: Waiting |
| 18-Apr-2018 21:45:04 | f2297bdfc824: Waiting |
| 18-Apr-2018 21:45:04 | 0cdb02ac1d86: Layer already exists |
| 18-Apr-2018 21:45:04 | 4685a92e073c: Layer already exists |
| 18-Apr-2018 21:45:04 | 1cd7cbd2febc: Layer already exists |
| 18-Apr-2018 21:45:04 | 695eaee0b84c: Layer already exists |
| 18-Apr-2018 21:45:06 | 9ffdd3dc6673: Layer already exists |
| 18-Apr-2018 21:45:09 | f96e6b25195f: Layer already exists |
| 18-Apr-2018 21:45:09 | 0fbe2bcb1bf9: Layer already exists |
| 18-Apr-2018 21:45:09 | 7f7a065d245a: Layer already exists |
| 18-Apr-2018 21:45:09 | 59669fcdd5eb: Layer already exists |
| 18-Apr-2018 21:45:09 | f2297bdfc824: Layer already exists |
| 18-Apr-2018 21:45:10 | c56153825175: Layer already exists |
| 18-Apr-2018 21:45:10 | ae620432889d: Layer already exists |
| 18-Apr-2018 21:45:10 | a2022691bf95: Layer already exists |
| 18-Apr-2018 21:45:10 | browndog_v0.2.0: digest: sha256:e498ced47865dfbf603789504ffd4e791d2553ff6a760e3957a020c866c9b645 size: 3031 |
| 18-Apr-2018 21:45:11 | The push refers to repository [docker.io/clowder/extractors-msc-chemcbc] |
| 18-Apr-2018 21:45:11 | 9ffdd3dc6673: Preparing |
| 18-Apr-2018 21:45:11 | 695eaee0b84c: Preparing |
| 18-Apr-2018 21:45:11 | 4685a92e073c: Preparing |
| 18-Apr-2018 21:45:11 | 1cd7cbd2febc: Preparing |
| 18-Apr-2018 21:45:11 | 0cdb02ac1d86: Preparing |
| 18-Apr-2018 21:45:11 | f2297bdfc824: Preparing |
| 18-Apr-2018 21:45:11 | 0fbe2bcb1bf9: Preparing |
| 18-Apr-2018 21:45:11 | 59669fcdd5eb: Preparing |
| 18-Apr-2018 21:45:11 | 7f7a065d245a: Preparing |
| 18-Apr-2018 21:45:11 | f96e6b25195f: Preparing |
| 18-Apr-2018 21:45:11 | f2297bdfc824: Waiting |
| 18-Apr-2018 21:45:11 | 0fbe2bcb1bf9: Waiting |
| 18-Apr-2018 21:45:11 | 59669fcdd5eb: Waiting |
| 18-Apr-2018 21:45:11 | 7f7a065d245a: Waiting |
| 18-Apr-2018 21:45:11 | c56153825175: Preparing |
| 18-Apr-2018 21:45:11 | ae620432889d: Preparing |
| 18-Apr-2018 21:45:11 | a2022691bf95: Preparing |
| 18-Apr-2018 21:45:11 | c56153825175: Waiting |
| 18-Apr-2018 21:45:11 | ae620432889d: Waiting |
| 18-Apr-2018 21:45:11 | a2022691bf95: Waiting |
| 18-Apr-2018 21:45:11 | f96e6b25195f: Waiting |
| 18-Apr-2018 21:45:11 | 9ffdd3dc6673: Layer already exists |
| 18-Apr-2018 21:45:11 | 0cdb02ac1d86: Layer already exists |
| 18-Apr-2018 21:45:11 | 4685a92e073c: Layer already exists |
| 18-Apr-2018 21:45:11 | 695eaee0b84c: Layer already exists |
| 18-Apr-2018 21:45:11 | 1cd7cbd2febc: Layer already exists |
| 18-Apr-2018 21:45:11 | 0fbe2bcb1bf9: Layer already exists |
| 18-Apr-2018 21:45:11 | 59669fcdd5eb: Layer already exists |
| 18-Apr-2018 21:45:11 | 7f7a065d245a: Layer already exists |
| 18-Apr-2018 21:45:11 | f96e6b25195f: Layer already exists |
| 18-Apr-2018 21:45:11 | f2297bdfc824: Layer already exists |
| 18-Apr-2018 21:45:11 | c56153825175: Layer already exists |
| 18-Apr-2018 21:45:11 | ae620432889d: Layer already exists |
| 18-Apr-2018 21:45:11 | a2022691bf95: Layer already exists |
| 18-Apr-2018 21:45:12 | browndog_v0.3.0: digest: sha256:e498ced47865dfbf603789504ffd4e791d2553ff6a760e3957a020c866c9b645 size: 3031 |
| 18-Apr-2018 21:45:12 | The push refers to repository [docker.io/clowder/extractors-msc-chemcbc] |
| 18-Apr-2018 21:45:12 | 9ffdd3dc6673: Preparing |
| 18-Apr-2018 21:45:12 | 695eaee0b84c: Preparing |
| 18-Apr-2018 21:45:12 | 4685a92e073c: Preparing |
| 18-Apr-2018 21:45:12 | 1cd7cbd2febc: Preparing |
| 18-Apr-2018 21:45:12 | 0cdb02ac1d86: Preparing |
| 18-Apr-2018 21:45:12 | f2297bdfc824: Preparing |
| 18-Apr-2018 21:45:12 | 0fbe2bcb1bf9: Preparing |
| 18-Apr-2018 21:45:12 | 59669fcdd5eb: Preparing |
| 18-Apr-2018 21:45:12 | 7f7a065d245a: Preparing |
| 18-Apr-2018 21:45:12 | f96e6b25195f: Preparing |
| 18-Apr-2018 21:45:12 | c56153825175: Preparing |
| 18-Apr-2018 21:45:12 | ae620432889d: Preparing |
| 18-Apr-2018 21:45:12 | a2022691bf95: Preparing |
| 18-Apr-2018 21:45:12 | 59669fcdd5eb: Waiting |
| 18-Apr-2018 21:45:12 | 7f7a065d245a: Waiting |
| 18-Apr-2018 21:45:12 | f96e6b25195f: Waiting |
| 18-Apr-2018 21:45:12 | c56153825175: Waiting |
| 18-Apr-2018 21:45:12 | ae620432889d: Waiting |
| 18-Apr-2018 21:45:12 | a2022691bf95: Waiting |
| 18-Apr-2018 21:45:12 | f2297bdfc824: Waiting |
| 18-Apr-2018 21:45:12 | 0fbe2bcb1bf9: Waiting |
| 18-Apr-2018 21:45:13 | 695eaee0b84c: Layer already exists |
| 18-Apr-2018 21:45:13 | 4685a92e073c: Layer already exists |
| 18-Apr-2018 21:45:13 | 9ffdd3dc6673: Layer already exists |
| 18-Apr-2018 21:45:13 | 0cdb02ac1d86: Layer already exists |
| 18-Apr-2018 21:45:13 | 1cd7cbd2febc: Layer already exists |
| 18-Apr-2018 21:45:13 | f2297bdfc824: Layer already exists |
| 18-Apr-2018 21:45:13 | 0fbe2bcb1bf9: Layer already exists |
| 18-Apr-2018 21:45:13 | f96e6b25195f: Layer already exists |
| 18-Apr-2018 21:45:13 | 59669fcdd5eb: Layer already exists |
| 18-Apr-2018 21:45:13 | 7f7a065d245a: Layer already exists |
| 18-Apr-2018 21:45:13 | ae620432889d: Layer already exists |
| 18-Apr-2018 21:45:13 | c56153825175: Layer already exists |
| 18-Apr-2018 21:45:13 | a2022691bf95: Layer already exists |
| 18-Apr-2018 21:45:13 | latest: digest: sha256:e498ced47865dfbf603789504ffd4e791d2553ff6a760e3957a020c866c9b645 size: 3031 |
| 18-Apr-2018 21:45:14 | Untagged: 22210:latest |
| 18-Apr-2018 21:45:14 | Sending build context to Docker daemon 198.1kB |
| 18-Apr-2018 21:45:14 | |
| 18-Apr-2018 21:45:14 | Step 1/11 : FROM clowder/pyclowder:1 |
| 18-Apr-2018 21:45:14 | ---> d1a9e970ed30 |
| 18-Apr-2018 21:45:14 | Step 2/11 : MAINTAINER Yan Zhao <yanzhao3@illinois.edu> |
| 18-Apr-2018 21:45:14 | ---> Using cache |
| 18-Apr-2018 21:45:14 | ---> 46bf81116550 |
| 18-Apr-2018 21:45:14 | Step 3/11 : ENV RABBITMQ_URI="" RABBITMQ_EXCHANGE="clowder" RABBITMQ_VHOST="%2F" RABBITMQ_QUEUE="ncsa.msc.MonitorExtractor" MONGO_URI="" DB_USERNAME="" DB_PASSWORD="" MAIN_SCRIPT="extractor-Monitor.py" |
| 18-Apr-2018 21:45:14 | ---> Using cache |
| 18-Apr-2018 21:45:14 | ---> 6612cb4532ae |
| 18-Apr-2018 21:45:14 | Step 4/11 : USER root |
| 18-Apr-2018 21:45:14 | ---> Using cache |
| 18-Apr-2018 21:45:14 | ---> a939e24e5e36 |
| 18-Apr-2018 21:45:14 | Step 5/11 : COPY requirements.txt /home/clowder/ |
| 18-Apr-2018 21:45:14 | ---> Using cache |
| 18-Apr-2018 21:45:14 | ---> 796505cd296f |
| 18-Apr-2018 21:45:14 | Step 6/11 : RUN pip install --upgrade pip |
| 18-Apr-2018 21:45:14 | ---> Using cache |
| 18-Apr-2018 21:45:14 | ---> c39deed02ffe |
| 18-Apr-2018 21:45:14 | Step 7/11 : RUN pip install -r /home/clowder/requirements.txt |
| 18-Apr-2018 21:45:14 | ---> Using cache |
| 18-Apr-2018 21:45:14 | ---> 980c152d5e6f |
| 18-Apr-2018 21:45:14 | Step 8/11 : USER clowder |
| 18-Apr-2018 21:45:14 | ---> Using cache |
| 18-Apr-2018 21:45:14 | ---> 79d45cc94dda |
| 18-Apr-2018 21:45:14 | Step 9/11 : COPY entrypoint.sh *.py *.json /home/clowder/ |
| 18-Apr-2018 21:45:14 | ---> Using cache |
| 18-Apr-2018 21:45:14 | ---> 8d367fc2568b |
| 18-Apr-2018 21:45:14 | Step 10/11 : ENTRYPOINT ["/home/clowder/entrypoint.sh"] |
| 18-Apr-2018 21:45:14 | ---> Using cache |
| 18-Apr-2018 21:45:14 | ---> fd6605ff1eed |
| 18-Apr-2018 21:45:14 | Step 11/11 : CMD ["extractor"] |
| 18-Apr-2018 21:45:14 | ---> Using cache |
| 18-Apr-2018 21:45:14 | ---> 11a0c838f3da |
| 18-Apr-2018 21:45:14 | Successfully built 11a0c838f3da |
| 18-Apr-2018 21:45:14 | Successfully tagged 22210:latest |
| 18-Apr-2018 21:45:14 | The push refers to repository [docker.io/clowder/extractors-msc-monitor] |
| 18-Apr-2018 21:45:14 | 630a4020e5d2: Preparing |
| 18-Apr-2018 21:45:14 | 4d32a6daeb31: Preparing |
| 18-Apr-2018 21:45:14 | 55f1d62ecf61: Preparing |
| 18-Apr-2018 21:45:14 | 51db3fc7aab4: Preparing |
| 18-Apr-2018 21:45:14 | 0cdb02ac1d86: Preparing |
| 18-Apr-2018 21:45:14 | f2297bdfc824: Preparing |
| 18-Apr-2018 21:45:14 | 0fbe2bcb1bf9: Preparing |
| 18-Apr-2018 21:45:14 | 59669fcdd5eb: Preparing |
| 18-Apr-2018 21:45:14 | 7f7a065d245a: Preparing |
| 18-Apr-2018 21:45:14 | f96e6b25195f: Preparing |
| 18-Apr-2018 21:45:14 | c56153825175: Preparing |
| 18-Apr-2018 21:45:14 | ae620432889d: Preparing |
| 18-Apr-2018 21:45:14 | a2022691bf95: Preparing |
| 18-Apr-2018 21:45:14 | f2297bdfc824: Waiting |
| 18-Apr-2018 21:45:14 | 0fbe2bcb1bf9: Waiting |
| 18-Apr-2018 21:45:14 | 59669fcdd5eb: Waiting |
| 18-Apr-2018 21:45:14 | 7f7a065d245a: Waiting |
| 18-Apr-2018 21:45:14 | f96e6b25195f: Waiting |
| 18-Apr-2018 21:45:14 | c56153825175: Waiting |
| 18-Apr-2018 21:45:14 | ae620432889d: Waiting |
| 18-Apr-2018 21:45:14 | a2022691bf95: Waiting |
| 18-Apr-2018 21:45:14 | 0cdb02ac1d86: Layer already exists |
| 18-Apr-2018 21:45:14 | 4d32a6daeb31: Layer already exists |
| 18-Apr-2018 21:45:15 | 55f1d62ecf61: Layer already exists |
| 18-Apr-2018 21:45:15 | 51db3fc7aab4: Layer already exists |
| 18-Apr-2018 21:45:15 | f2297bdfc824: Layer already exists |
| 18-Apr-2018 21:45:15 | 630a4020e5d2: Layer already exists |
| 18-Apr-2018 21:45:15 | 0fbe2bcb1bf9: Layer already exists |
| 18-Apr-2018 21:45:15 | 59669fcdd5eb: Layer already exists |
| 18-Apr-2018 21:45:15 | 7f7a065d245a: Layer already exists |
| 18-Apr-2018 21:45:15 | f96e6b25195f: Layer already exists |
| 18-Apr-2018 21:45:15 | c56153825175: Layer already exists |
| 18-Apr-2018 21:45:15 | ae620432889d: Layer already exists |
| 18-Apr-2018 21:45:15 | a2022691bf95: Layer already exists |
| 18-Apr-2018 21:45:16 | browndog_v0.2.0: digest: sha256:d02b674f2f2d6c69e89b390850093db1ae887220a1daf89ba6881ed7d378b78d size: 3031 |
| 18-Apr-2018 21:45:16 | The push refers to repository [docker.io/clowder/extractors-msc-monitor] |
| 18-Apr-2018 21:45:16 | 630a4020e5d2: Preparing |
| 18-Apr-2018 21:45:16 | 4d32a6daeb31: Preparing |
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| 18-Apr-2018 21:45:16 | a2022691bf95: Preparing |
| 18-Apr-2018 21:45:16 | 59669fcdd5eb: Waiting |
| 18-Apr-2018 21:45:16 | 7f7a065d245a: Waiting |
| 18-Apr-2018 21:45:16 | f96e6b25195f: Waiting |
| 18-Apr-2018 21:45:16 | c56153825175: Waiting |
| 18-Apr-2018 21:45:16 | f2297bdfc824: Waiting |
| 18-Apr-2018 21:45:16 | ae620432889d: Waiting |
| 18-Apr-2018 21:45:16 | 0fbe2bcb1bf9: Waiting |
| 18-Apr-2018 21:45:16 | a2022691bf95: Waiting |
| 18-Apr-2018 21:45:16 | 4d32a6daeb31: Layer already exists |
| 18-Apr-2018 21:45:16 | 51db3fc7aab4: Layer already exists |
| 18-Apr-2018 21:45:16 | 0cdb02ac1d86: Layer already exists |
| 18-Apr-2018 21:45:16 | 55f1d62ecf61: Layer already exists |
| 18-Apr-2018 21:45:16 | 0fbe2bcb1bf9: Layer already exists |
| 18-Apr-2018 21:45:16 | f2297bdfc824: Layer already exists |
| 18-Apr-2018 21:45:16 | 7f7a065d245a: Layer already exists |
| 18-Apr-2018 21:45:16 | 59669fcdd5eb: Layer already exists |
| 18-Apr-2018 21:45:16 | 630a4020e5d2: Layer already exists |
| 18-Apr-2018 21:45:17 | ae620432889d: Layer already exists |
| 18-Apr-2018 21:45:17 | c56153825175: Layer already exists |
| 18-Apr-2018 21:45:17 | f96e6b25195f: Layer already exists |
| 18-Apr-2018 21:45:17 | a2022691bf95: Layer already exists |
| 18-Apr-2018 21:45:17 | browndog_v0.3.0: digest: sha256:d02b674f2f2d6c69e89b390850093db1ae887220a1daf89ba6881ed7d378b78d size: 3031 |
| 18-Apr-2018 21:45:17 | The push refers to repository [docker.io/clowder/extractors-msc-monitor] |
| 18-Apr-2018 21:45:17 | 630a4020e5d2: Preparing |
| 18-Apr-2018 21:45:17 | 4d32a6daeb31: Preparing |
| 18-Apr-2018 21:45:17 | 55f1d62ecf61: Preparing |
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| 18-Apr-2018 21:45:17 | ae620432889d: Preparing |
| 18-Apr-2018 21:45:17 | a2022691bf95: Preparing |
| 18-Apr-2018 21:45:17 | 7f7a065d245a: Waiting |
| 18-Apr-2018 21:45:17 | a2022691bf95: Waiting |
| 18-Apr-2018 21:45:17 | f96e6b25195f: Waiting |
| 18-Apr-2018 21:45:17 | c56153825175: Waiting |
| 18-Apr-2018 21:45:17 | ae620432889d: Waiting |
| 18-Apr-2018 21:45:17 | 0fbe2bcb1bf9: Waiting |
| 18-Apr-2018 21:45:17 | f2297bdfc824: Waiting |
| 18-Apr-2018 21:45:17 | 59669fcdd5eb: Waiting |
| 18-Apr-2018 21:45:18 | 0cdb02ac1d86: Layer already exists |
| 18-Apr-2018 21:45:18 | 630a4020e5d2: Layer already exists |
| 18-Apr-2018 21:45:23 | 0fbe2bcb1bf9: Layer already exists |
| 18-Apr-2018 21:45:23 | f2297bdfc824: Layer already exists |
| 18-Apr-2018 21:45:23 | 51db3fc7aab4: Layer already exists |
| 18-Apr-2018 21:45:23 | 55f1d62ecf61: Layer already exists |
| 18-Apr-2018 21:45:23 | 4d32a6daeb31: Layer already exists |
| 18-Apr-2018 21:45:23 | 7f7a065d245a: Layer already exists |
| 18-Apr-2018 21:45:23 | 59669fcdd5eb: Layer already exists |
| 18-Apr-2018 21:45:23 | f96e6b25195f: Layer already exists |
| 18-Apr-2018 21:45:23 | c56153825175: Layer already exists |
| 18-Apr-2018 21:45:23 | ae620432889d: Layer already exists |
| 18-Apr-2018 21:45:23 | a2022691bf95: Layer already exists |
| 18-Apr-2018 21:45:23 | latest: digest: sha256:d02b674f2f2d6c69e89b390850093db1ae887220a1daf89ba6881ed7d378b78d size: 3031 |
| 18-Apr-2018 21:45:24 | Untagged: 22210:latest |
| 18-Apr-2018 21:45:24 | Sending build context to Docker daemon 12.1MB |
| 18-Apr-2018 21:45:24 | |
| 18-Apr-2018 21:45:24 | Step 1/11 : FROM clowder/pyclowder:1 |
| 18-Apr-2018 21:45:24 | ---> d1a9e970ed30 |
| 18-Apr-2018 21:45:24 | Step 2/11 : MAINTAINER Yan Zhao <yanzhao3@illinois.edu> |
| 18-Apr-2018 21:45:24 | ---> Using cache |
| 18-Apr-2018 21:45:24 | ---> 46bf81116550 |
| 18-Apr-2018 21:45:24 | Step 3/11 : ENV RABBITMQ_URI="" RABBITMQ_EXCHANGE="clowder" RABBITMQ_VHOST="%2F" RABBITMQ_QUEUE="ncsa.msc.PhenotypeExtractor" MONGO_URI="" DB_USERNAME="" DB_PASSWORD="" MAIN_SCRIPT="extractor-Phenotype.py" |
| 18-Apr-2018 21:45:24 | ---> Using cache |
| 18-Apr-2018 21:45:24 | ---> 1604a36dc849 |
| 18-Apr-2018 21:45:24 | Step 4/11 : USER root |
| 18-Apr-2018 21:45:24 | ---> Using cache |
| 18-Apr-2018 21:45:24 | ---> c40e6365dcbe |
| 18-Apr-2018 21:45:24 | Step 5/11 : COPY requirements.txt /home/clowder/ |
| 18-Apr-2018 21:45:24 | ---> Using cache |
| 18-Apr-2018 21:45:24 | ---> 7fc75f453906 |
| 18-Apr-2018 21:45:24 | Step 6/11 : RUN pip install --upgrade pip |
| 18-Apr-2018 21:45:24 | ---> Using cache |
| 18-Apr-2018 21:45:24 | ---> 8df4a7ffb6fb |
| 18-Apr-2018 21:45:24 | Step 7/11 : RUN pip install -r /home/clowder/requirements.txt |
| 18-Apr-2018 21:45:24 | ---> Using cache |
| 18-Apr-2018 21:45:24 | ---> fd74ef1aceda |
| 18-Apr-2018 21:45:24 | Step 8/11 : USER clowder |
| 18-Apr-2018 21:45:24 | ---> Using cache |
| 18-Apr-2018 21:45:24 | ---> 630208e60695 |
| 18-Apr-2018 21:45:24 | Step 9/11 : COPY entrypoint.sh *.py *.json /home/clowder/ |
| 18-Apr-2018 21:45:24 | ---> Using cache |
| 18-Apr-2018 21:45:24 | ---> 8c7d7ad853eb |
| 18-Apr-2018 21:45:24 | Step 10/11 : ENTRYPOINT ["/home/clowder/entrypoint.sh"] |
| 18-Apr-2018 21:45:24 | ---> Using cache |
| 18-Apr-2018 21:45:24 | ---> e585421734f6 |
| 18-Apr-2018 21:45:24 | Step 11/11 : CMD ["extractor"] |
| 18-Apr-2018 21:45:24 | ---> Using cache |
| 18-Apr-2018 21:45:24 | ---> 225624e9556a |
| 18-Apr-2018 21:45:24 | Successfully built 225624e9556a |
| 18-Apr-2018 21:45:24 | Successfully tagged 22210:latest |
| 18-Apr-2018 21:45:24 | The push refers to repository [docker.io/clowder/extractors-msc-phenotype] |
| 18-Apr-2018 21:45:24 | 20baf33cf4e5: Preparing |
| 18-Apr-2018 21:45:24 | 67d3d610e020: Preparing |
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| 18-Apr-2018 21:45:24 | f2297bdfc824: Waiting |
| 18-Apr-2018 21:45:24 | 0fbe2bcb1bf9: Waiting |
| 18-Apr-2018 21:45:24 | 59669fcdd5eb: Waiting |
| 18-Apr-2018 21:45:24 | 7f7a065d245a: Waiting |
| 18-Apr-2018 21:45:24 | f96e6b25195f: Waiting |
| 18-Apr-2018 21:45:24 | c56153825175: Waiting |
| 18-Apr-2018 21:45:24 | ae620432889d: Waiting |
| 18-Apr-2018 21:45:24 | a2022691bf95: Waiting |
| 18-Apr-2018 21:45:25 | 0cdb02ac1d86: Layer already exists |
| 18-Apr-2018 21:45:25 | 20baf33cf4e5: Layer already exists |
| 18-Apr-2018 21:45:25 | b4d78dfb2d96: Layer already exists |
| 18-Apr-2018 21:45:25 | f2297bdfc824: Layer already exists |
| 18-Apr-2018 21:45:25 | 764b1463235e: Layer already exists |
| 18-Apr-2018 21:45:25 | 0fbe2bcb1bf9: Layer already exists |
| 18-Apr-2018 21:45:25 | 59669fcdd5eb: Layer already exists |
| 18-Apr-2018 21:45:25 | 7f7a065d245a: Layer already exists |
| 18-Apr-2018 21:45:25 | f96e6b25195f: Layer already exists |
| 18-Apr-2018 21:45:25 | c56153825175: Layer already exists |
| 18-Apr-2018 21:45:25 | ae620432889d: Layer already exists |
| 18-Apr-2018 21:45:25 | a2022691bf95: Layer already exists |
| 18-Apr-2018 21:45:25 | 67d3d610e020: Layer already exists |
| 18-Apr-2018 21:45:26 | browndog_v0.2.0: digest: sha256:35428eac474992acdc01a32f6a860e0d5aa4cd9499174b5c6e3c9797a19a19cc size: 3031 |
| 18-Apr-2018 21:45:26 | The push refers to repository [docker.io/clowder/extractors-msc-phenotype] |
| 18-Apr-2018 21:45:31 | 20baf33cf4e5: Preparing |
| 18-Apr-2018 21:45:31 | 67d3d610e020: Preparing |
| 18-Apr-2018 21:45:31 | b4d78dfb2d96: Preparing |
| 18-Apr-2018 21:45:31 | 764b1463235e: Preparing |
| 18-Apr-2018 21:45:31 | 0cdb02ac1d86: Preparing |
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| 18-Apr-2018 21:45:31 | 0fbe2bcb1bf9: Preparing |
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| 18-Apr-2018 21:45:31 | c56153825175: Preparing |
| 18-Apr-2018 21:45:31 | ae620432889d: Preparing |
| 18-Apr-2018 21:45:31 | a2022691bf95: Preparing |
| 18-Apr-2018 21:45:31 | f2297bdfc824: Waiting |
| 18-Apr-2018 21:45:31 | 0fbe2bcb1bf9: Waiting |
| 18-Apr-2018 21:45:31 | 59669fcdd5eb: Waiting |
| 18-Apr-2018 21:45:31 | 7f7a065d245a: Waiting |
| 18-Apr-2018 21:45:31 | f96e6b25195f: Waiting |
| 18-Apr-2018 21:45:31 | c56153825175: Waiting |
| 18-Apr-2018 21:45:31 | ae620432889d: Waiting |
| 18-Apr-2018 21:45:31 | a2022691bf95: Waiting |
| 18-Apr-2018 21:45:32 | 67d3d610e020: Layer already exists |
| 18-Apr-2018 21:45:32 | b4d78dfb2d96: Layer already exists |
| 18-Apr-2018 21:45:32 | 0cdb02ac1d86: Layer already exists |
| 18-Apr-2018 21:45:32 | 764b1463235e: Layer already exists |
| 18-Apr-2018 21:45:32 | f2297bdfc824: Layer already exists |
| 18-Apr-2018 21:45:32 | 59669fcdd5eb: Layer already exists |
| 18-Apr-2018 21:45:32 | 0fbe2bcb1bf9: Layer already exists |
| 18-Apr-2018 21:45:32 | 7f7a065d245a: Layer already exists |
| 18-Apr-2018 21:45:32 | c56153825175: Layer already exists |
| 18-Apr-2018 21:45:32 | ae620432889d: Layer already exists |
| 18-Apr-2018 21:45:32 | f96e6b25195f: Layer already exists |
| 18-Apr-2018 21:45:32 | a2022691bf95: Layer already exists |
| 18-Apr-2018 21:45:37 | 20baf33cf4e5: Layer already exists |
| 18-Apr-2018 21:45:37 | browndog_v0.3.0: digest: sha256:35428eac474992acdc01a32f6a860e0d5aa4cd9499174b5c6e3c9797a19a19cc size: 3031 |
| 18-Apr-2018 21:45:37 | The push refers to repository [docker.io/clowder/extractors-msc-phenotype] |
| 18-Apr-2018 21:45:37 | 20baf33cf4e5: Preparing |
| 18-Apr-2018 21:45:37 | 67d3d610e020: Preparing |
| 18-Apr-2018 21:45:37 | b4d78dfb2d96: Preparing |
| 18-Apr-2018 21:45:37 | 764b1463235e: Preparing |
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| 18-Apr-2018 21:45:37 | 0fbe2bcb1bf9: Preparing |
| 18-Apr-2018 21:45:37 | 59669fcdd5eb: Preparing |
| 18-Apr-2018 21:45:37 | 7f7a065d245a: Preparing |
| 18-Apr-2018 21:45:37 | f96e6b25195f: Preparing |
| 18-Apr-2018 21:45:37 | c56153825175: Preparing |
| 18-Apr-2018 21:45:37 | ae620432889d: Preparing |
| 18-Apr-2018 21:45:37 | a2022691bf95: Preparing |
| 18-Apr-2018 21:45:37 | f2297bdfc824: Waiting |
| 18-Apr-2018 21:45:37 | 0fbe2bcb1bf9: Waiting |
| 18-Apr-2018 21:45:37 | 59669fcdd5eb: Waiting |
| 18-Apr-2018 21:45:37 | 7f7a065d245a: Waiting |
| 18-Apr-2018 21:45:37 | f96e6b25195f: Waiting |
| 18-Apr-2018 21:45:37 | c56153825175: Waiting |
| 18-Apr-2018 21:45:37 | ae620432889d: Waiting |
| 18-Apr-2018 21:45:37 | a2022691bf95: Waiting |
| 18-Apr-2018 21:45:38 | b4d78dfb2d96: Layer already exists |
| 18-Apr-2018 21:45:38 | 20baf33cf4e5: Layer already exists |
| 18-Apr-2018 21:45:38 | 67d3d610e020: Layer already exists |
| 18-Apr-2018 21:45:38 | 0cdb02ac1d86: Layer already exists |
| 18-Apr-2018 21:45:38 | f2297bdfc824: Layer already exists |
| 18-Apr-2018 21:45:38 | 0fbe2bcb1bf9: Layer already exists |
| 18-Apr-2018 21:45:38 | 59669fcdd5eb: Layer already exists |
| 18-Apr-2018 21:45:38 | 7f7a065d245a: Layer already exists |
| 18-Apr-2018 21:45:38 | 764b1463235e: Layer already exists |
| 18-Apr-2018 21:45:38 | c56153825175: Layer already exists |
| 18-Apr-2018 21:45:38 | ae620432889d: Layer already exists |
| 18-Apr-2018 21:45:38 | f96e6b25195f: Layer already exists |
| 18-Apr-2018 21:45:38 | a2022691bf95: Layer already exists |
| 18-Apr-2018 21:45:38 | latest: digest: sha256:35428eac474992acdc01a32f6a860e0d5aa4cd9499174b5c6e3c9797a19a19cc size: 3031 |
| 18-Apr-2018 21:45:39 | Untagged: 22210:latest |
| 18-Apr-2018 21:45:39 | Finished task 'docker build' with result: Success |
| 18-Apr-2018 21:45:39 | Running post build plugin 'Docker Container Cleanup' |
| 18-Apr-2018 21:45:39 | Running post build plugin 'NCover Results Collector' |
| 18-Apr-2018 21:45:39 | Running post build plugin 'Clover Results Collector' |
| 18-Apr-2018 21:45:39 | Running post build plugin 'npm Cache Cleanup' |
| 18-Apr-2018 21:45:39 | Running post build plugin 'Artifact Copier' |
| 18-Apr-2018 21:45:39 | Finalising the build... |
| 18-Apr-2018 21:45:39 | Stopping timer. |
| 18-Apr-2018 21:45:39 | Build CATS-MSC-JOB1-36 completed. |
| 18-Apr-2018 21:45:39 | Running on server: post build plugin 'NCover Results Collector' |
| 18-Apr-2018 21:45:39 | Running on server: post build plugin 'Build Hanging Detection Configuration' |
| 18-Apr-2018 21:45:39 | Running on server: post build plugin 'Clover Delta Calculator' |
| 18-Apr-2018 21:45:39 | Running on server: post build plugin 'Maven Dependencies Postprocessor' |
| 18-Apr-2018 21:45:39 | All post build plugins have finished |
| 18-Apr-2018 21:45:39 | Generating build results summary... |
| 18-Apr-2018 21:45:39 | Saving build results to disk... |
| 18-Apr-2018 21:45:39 | Logging substituted variables... |
| 18-Apr-2018 21:45:39 | Indexing build results... |
| 18-Apr-2018 21:45:39 | Finished building CATS-MSC-JOB1-36. |