Build: #38 was successful
Job: Default Job was successful
Build log
The build generated 1,100 lines of output. The output is too long and has been truncated to the last 1,000 lines. Download or view full build log.
| 12-Jul-2018 14:13:02 | The following additional packages will be installed: |
| 12-Jul-2018 14:13:02 | libice6 libidn11 libsm6 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 |
| 12-Jul-2018 14:13:02 | x11-common |
| 12-Jul-2018 14:13:02 | The following NEW packages will be installed: |
| 12-Jul-2018 14:13:02 | libice6 libidn11 libsm6 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 |
| 12-Jul-2018 14:13:02 | libxext6 libxmu6 libxt6 wget x11-common |
| 12-Jul-2018 14:13:02 | 0 upgraded, 13 newly installed, 0 to remove and 47 not upgraded. |
| 12-Jul-2018 14:13:02 | Need to get 1402 kB of archives. |
| 12-Jul-2018 14:13:02 | After this operation, 5596 kB of additional disk space will be used. |
| 12-Jul-2018 14:13:02 | Get:1 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxau6 amd64 1:1.0.8-1 [8376 B] |
| 12-Jul-2018 14:13:02 | Get:2 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxdmcp6 amd64 1:1.1.2-1.1 [11.0 kB] |
| 12-Jul-2018 14:13:02 | Get:3 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcb1 amd64 1.11.1-1ubuntu1 [40.0 kB] |
| 12-Jul-2018 14:13:02 | Get:4 http://archive.ubuntu.com/ubuntu xenial/main amd64 libx11-data all 2:1.6.3-1ubuntu2 [113 kB] |
| 12-Jul-2018 14:13:02 | Get:5 http://archive.ubuntu.com/ubuntu xenial/main amd64 libx11-6 amd64 2:1.6.3-1ubuntu2 [571 kB] |
| 12-Jul-2018 14:13:03 | Get:6 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxext6 amd64 2:1.3.3-1 [29.4 kB] |
| 12-Jul-2018 14:13:03 | Get:7 http://archive.ubuntu.com/ubuntu xenial/main amd64 x11-common all 1:7.7+13ubuntu3 [22.4 kB] |
| 12-Jul-2018 14:13:03 | Get:8 http://archive.ubuntu.com/ubuntu xenial/main amd64 libice6 amd64 2:1.0.9-1 [39.2 kB] |
| 12-Jul-2018 14:13:03 | Get:9 http://archive.ubuntu.com/ubuntu xenial/main amd64 libsm6 amd64 2:1.2.2-1 [15.8 kB] |
| 12-Jul-2018 14:13:03 | Get:10 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libidn11 amd64 1.32-3ubuntu1.2 [46.5 kB] |
| 12-Jul-2018 14:13:03 | Get:11 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 wget amd64 1.17.1-1ubuntu1.4 [299 kB] |
| 12-Jul-2018 14:13:03 | Get:12 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxt6 amd64 1:1.1.5-0ubuntu1 [160 kB] |
| 12-Jul-2018 14:13:03 | Get:13 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxmu6 amd64 2:1.1.2-2 [46.0 kB] |
| 12-Jul-2018 14:13:03 | debconf: delaying package configuration, since apt-utils is not installed |
| 12-Jul-2018 14:13:03 | Fetched 1402 kB in 0s (1586 kB/s) |
| 12-Jul-2018 14:13:03 | Selecting previously unselected package libxau6:amd64. |
| 12-Jul-2018 14:13:03 | (Reading database ... |
| 12-Jul-2018 14:13:03 | (Reading database ... 5% |
| 12-Jul-2018 14:13:03 | (Reading database ... 10% |
| 12-Jul-2018 14:13:03 | (Reading database ... 15% |
| 12-Jul-2018 14:13:03 | (Reading database ... 20% |
| 12-Jul-2018 14:13:03 | (Reading database ... 25% |
| 12-Jul-2018 14:13:03 | (Reading database ... 30% |
| 12-Jul-2018 14:13:03 | (Reading database ... 35% |
| 12-Jul-2018 14:13:03 | (Reading database ... 40% |
| 12-Jul-2018 14:13:03 | (Reading database ... 45% |
| 12-Jul-2018 14:13:03 | (Reading database ... 50% |
| 12-Jul-2018 14:13:03 | (Reading database ... 55% |
| 12-Jul-2018 14:13:03 | (Reading database ... 60% |
| 12-Jul-2018 14:13:03 | (Reading database ... 65% |
| 12-Jul-2018 14:13:03 | (Reading database ... 70% |
| 12-Jul-2018 14:13:03 | (Reading database ... 75% |
| 12-Jul-2018 14:13:03 | (Reading database ... 80% |
| 12-Jul-2018 14:13:03 | (Reading database ... 85% |
| 12-Jul-2018 14:13:03 | (Reading database ... 90% |
| 12-Jul-2018 14:13:03 | (Reading database ... 95% |
| 12-Jul-2018 14:13:03 | (Reading database ... 100% |
| 12-Jul-2018 14:13:03 | (Reading database ... 6101 files and directories currently installed.) |
| 12-Jul-2018 14:13:03 | Preparing to unpack .../libxau6_1%3a1.0.8-1_amd64.deb ... |
| 12-Jul-2018 14:13:03 | Unpacking libxau6:amd64 (1:1.0.8-1) ... |
| 12-Jul-2018 14:13:04 | Selecting previously unselected package libxdmcp6:amd64. |
| 12-Jul-2018 14:13:04 | Preparing to unpack .../libxdmcp6_1%3a1.1.2-1.1_amd64.deb ... |
| 12-Jul-2018 14:13:04 | Unpacking libxdmcp6:amd64 (1:1.1.2-1.1) ... |
| 12-Jul-2018 14:13:04 | Selecting previously unselected package libxcb1:amd64. |
| 12-Jul-2018 14:13:04 | Preparing to unpack .../libxcb1_1.11.1-1ubuntu1_amd64.deb ... |
| 12-Jul-2018 14:13:05 | Unpacking libxcb1:amd64 (1.11.1-1ubuntu1) ... |
| 12-Jul-2018 14:13:05 | Selecting previously unselected package libx11-data. |
| 12-Jul-2018 14:13:05 | Preparing to unpack .../libx11-data_2%3a1.6.3-1ubuntu2_all.deb ... |
| 12-Jul-2018 14:13:05 | Unpacking libx11-data (2:1.6.3-1ubuntu2) ... |
| 12-Jul-2018 14:13:07 | Selecting previously unselected package libx11-6:amd64. |
| 12-Jul-2018 14:13:07 | Preparing to unpack .../libx11-6_2%3a1.6.3-1ubuntu2_amd64.deb ... |
| 12-Jul-2018 14:13:07 | Unpacking libx11-6:amd64 (2:1.6.3-1ubuntu2) ... |
| 12-Jul-2018 14:13:07 | Selecting previously unselected package libxext6:amd64. |
| 12-Jul-2018 14:13:07 | Preparing to unpack .../libxext6_2%3a1.3.3-1_amd64.deb ... |
| 12-Jul-2018 14:13:07 | Unpacking libxext6:amd64 (2:1.3.3-1) ... |
| 12-Jul-2018 14:13:08 | Selecting previously unselected package x11-common. |
| 12-Jul-2018 14:13:08 | Preparing to unpack .../x11-common_1%3a7.7+13ubuntu3_all.deb ... |
| 12-Jul-2018 14:13:08 | Unpacking x11-common (1:7.7+13ubuntu3) ... |
| 12-Jul-2018 14:13:09 | Selecting previously unselected package libice6:amd64. |
| 12-Jul-2018 14:13:09 | Preparing to unpack .../libice6_2%3a1.0.9-1_amd64.deb ... |
| 12-Jul-2018 14:13:09 | Unpacking libice6:amd64 (2:1.0.9-1) ... |
| 12-Jul-2018 14:13:10 | Selecting previously unselected package libsm6:amd64. |
| 12-Jul-2018 14:13:10 | Preparing to unpack .../libsm6_2%3a1.2.2-1_amd64.deb ... |
| 12-Jul-2018 14:13:10 | Unpacking libsm6:amd64 (2:1.2.2-1) ... |
| 12-Jul-2018 14:13:11 | Selecting previously unselected package libidn11:amd64. |
| 12-Jul-2018 14:13:11 | Preparing to unpack .../libidn11_1.32-3ubuntu1.2_amd64.deb ... |
| 12-Jul-2018 14:13:11 | Unpacking libidn11:amd64 (1.32-3ubuntu1.2) ... |
| 12-Jul-2018 14:13:11 | Selecting previously unselected package wget. |
| 12-Jul-2018 14:13:11 | Preparing to unpack .../wget_1.17.1-1ubuntu1.4_amd64.deb ... |
| 12-Jul-2018 14:13:11 | Unpacking wget (1.17.1-1ubuntu1.4) ... |
| 12-Jul-2018 14:13:12 | Selecting previously unselected package libxt6:amd64. |
| 12-Jul-2018 14:13:12 | Preparing to unpack .../libxt6_1%3a1.1.5-0ubuntu1_amd64.deb ... |
| 12-Jul-2018 14:13:12 | Unpacking libxt6:amd64 (1:1.1.5-0ubuntu1) ... |
| 12-Jul-2018 14:13:14 | Selecting previously unselected package libxmu6:amd64. |
| 12-Jul-2018 14:13:14 | Preparing to unpack .../libxmu6_2%3a1.1.2-2_amd64.deb ... |
| 12-Jul-2018 14:13:14 | Unpacking libxmu6:amd64 (2:1.1.2-2) ... |
| 12-Jul-2018 14:13:15 | Processing triggers for libc-bin (2.23-0ubuntu9) ... |
| 12-Jul-2018 14:13:16 | Processing triggers for systemd (229-4ubuntu19) ... |
| 12-Jul-2018 14:13:16 | Setting up libxau6:amd64 (1:1.0.8-1) ... |
| 12-Jul-2018 14:13:17 | Setting up libxdmcp6:amd64 (1:1.1.2-1.1) ... |
| 12-Jul-2018 14:13:17 | Setting up libxcb1:amd64 (1.11.1-1ubuntu1) ... |
| 12-Jul-2018 14:13:17 | Setting up libx11-data (2:1.6.3-1ubuntu2) ... |
| 12-Jul-2018 14:13:17 | Setting up libx11-6:amd64 (2:1.6.3-1ubuntu2) ... |
| 12-Jul-2018 14:13:18 | Setting up libxext6:amd64 (2:1.3.3-1) ... |
| 12-Jul-2018 14:13:18 | Setting up x11-common (1:7.7+13ubuntu3) ... |
| 12-Jul-2018 14:13:21 | debconf: unable to initialize frontend: Dialog |
| 12-Jul-2018 14:13:21 | debconf: (TERM is not set, so the dialog frontend is not usable.) |
| 12-Jul-2018 14:13:21 | debconf: falling back to frontend: Readline |
| 12-Jul-2018 14:13:21 | debconf: unable to initialize frontend: Readline |
| 12-Jul-2018 14:13:21 | debconf: (Can't locate Term/ReadLine.pm in @INC (you may need to install the Term::ReadLine module) (@INC contains: /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.22.1 /usr/local/share/perl/5.22.1 /usr/lib/x86_64-linux-gnu/perl5/5.22 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl/5.22 /usr/share/perl/5.22 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base .) at /usr/share/perl5/Debconf/FrontEnd/Readline.pm line 7.) |
| 12-Jul-2018 14:13:21 | debconf: falling back to frontend: Teletype |
| 12-Jul-2018 14:13:21 | update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults |
| 12-Jul-2018 14:13:21 | invoke-rc.d: could not determine current runlevel |
| 12-Jul-2018 14:13:21 | invoke-rc.d: policy-rc.d denied execution of start. |
| 12-Jul-2018 14:13:21 | Setting up libice6:amd64 (2:1.0.9-1) ... |
| 12-Jul-2018 14:13:22 | Setting up libsm6:amd64 (2:1.2.2-1) ... |
| 12-Jul-2018 14:13:22 | Setting up libidn11:amd64 (1.32-3ubuntu1.2) ... |
| 12-Jul-2018 14:13:23 | Setting up wget (1.17.1-1ubuntu1.4) ... |
| 12-Jul-2018 14:13:23 | Setting up libxt6:amd64 (1:1.1.5-0ubuntu1) ... |
| 12-Jul-2018 14:13:23 | Setting up libxmu6:amd64 (2:1.1.2-2) ... |
| 12-Jul-2018 14:13:23 | Processing triggers for libc-bin (2.23-0ubuntu9) ... |
| 12-Jul-2018 14:13:24 | Processing triggers for systemd (229-4ubuntu19) ... |
| 12-Jul-2018 14:13:25 | Removing intermediate container 59fd7da6f4fc |
| 12-Jul-2018 14:13:25 | ---> d49db99d0077 |
| 12-Jul-2018 14:13:25 | Step 8/11 : USER clowder |
| 12-Jul-2018 14:13:25 | ---> Running in af1d5be62fe4 |
| 12-Jul-2018 14:13:26 | Removing intermediate container af1d5be62fe4 |
| 12-Jul-2018 14:13:26 | ---> b48deeb59a45 |
| 12-Jul-2018 14:13:26 | Step 9/11 : COPY entrypoint.sh *.py *.m data/*.mat *.json /home/clowder/ |
| 12-Jul-2018 14:13:27 | ---> 7e079c919b9a |
| 12-Jul-2018 14:13:27 | Step 10/11 : ENTRYPOINT ["/home/clowder/entrypoint.sh"] |
| 12-Jul-2018 14:13:27 | ---> Running in 0009a942fe50 |
| 12-Jul-2018 14:13:28 | Removing intermediate container 0009a942fe50 |
| 12-Jul-2018 14:13:28 | ---> 7100bf64b4ad |
| 12-Jul-2018 14:13:28 | Step 11/11 : CMD ["extractor"] |
| 12-Jul-2018 14:13:28 | ---> Running in f7da38904459 |
| 12-Jul-2018 14:13:28 | Removing intermediate container f7da38904459 |
| 12-Jul-2018 14:13:28 | ---> 9ad814c64136 |
| 12-Jul-2018 14:13:28 | Successfully built 9ad814c64136 |
| 12-Jul-2018 14:13:29 | Successfully tagged 6184:latest |
| 12-Jul-2018 14:13:29 | The push refers to repository [docker.io/clowder/extractors-msc-kidney] |
| 12-Jul-2018 14:13:29 | 348f612055a3: Preparing |
| 12-Jul-2018 14:13:29 | 0418e9eae634: Preparing |
| 12-Jul-2018 14:13:29 | 43645af78199: Preparing |
| 12-Jul-2018 14:13:29 | 0cdb02ac1d86: Preparing |
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| 12-Jul-2018 14:13:29 | 0fbe2bcb1bf9: Preparing |
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| 12-Jul-2018 14:13:29 | a2022691bf95: Preparing |
| 12-Jul-2018 14:13:29 | 0fbe2bcb1bf9: Waiting |
| 12-Jul-2018 14:13:29 | c56153825175: Waiting |
| 12-Jul-2018 14:13:29 | ae620432889d: Waiting |
| 12-Jul-2018 14:13:29 | 59669fcdd5eb: Waiting |
| 12-Jul-2018 14:13:29 | a2022691bf95: Waiting |
| 12-Jul-2018 14:13:29 | 7f7a065d245a: Waiting |
| 12-Jul-2018 14:13:29 | f96e6b25195f: Waiting |
| 12-Jul-2018 14:13:29 | f2297bdfc824: Layer already exists |
| 12-Jul-2018 14:13:29 | 0cdb02ac1d86: Layer already exists |
| 12-Jul-2018 14:13:30 | 0fbe2bcb1bf9: Layer already exists |
| 12-Jul-2018 14:13:30 | 59669fcdd5eb: Layer already exists |
| 12-Jul-2018 14:13:30 | 7f7a065d245a: Layer already exists |
| 12-Jul-2018 14:13:30 | f96e6b25195f: Layer already exists |
| 12-Jul-2018 14:13:30 | c56153825175: Layer already exists |
| 12-Jul-2018 14:13:30 | ae620432889d: Layer already exists |
| 12-Jul-2018 14:13:30 | a2022691bf95: Layer already exists |
| 12-Jul-2018 14:13:31 | 348f612055a3: Pushed |
| 12-Jul-2018 14:13:31 | 0418e9eae634: Pushed |
| 12-Jul-2018 14:13:31 | 43645af78199: Pushed |
| 12-Jul-2018 14:13:33 | browndog_v0.2.0: digest: sha256:e7848692da0aa93013ebe4f3e02dc423c4cb2c32b4a80947bfab62398726ce1d size: 2826 |
| 12-Jul-2018 14:13:33 | The push refers to repository [docker.io/clowder/extractors-msc-kidney] |
| 12-Jul-2018 14:13:33 | 348f612055a3: Preparing |
| 12-Jul-2018 14:13:33 | 0418e9eae634: Preparing |
| 12-Jul-2018 14:13:33 | 43645af78199: Preparing |
| 12-Jul-2018 14:13:33 | 0cdb02ac1d86: Preparing |
| 12-Jul-2018 14:13:33 | f2297bdfc824: Preparing |
| 12-Jul-2018 14:13:33 | 0fbe2bcb1bf9: Preparing |
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| 12-Jul-2018 14:13:33 | 7f7a065d245a: Preparing |
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| 12-Jul-2018 14:13:33 | c56153825175: Preparing |
| 12-Jul-2018 14:13:33 | ae620432889d: Preparing |
| 12-Jul-2018 14:13:33 | a2022691bf95: Preparing |
| 12-Jul-2018 14:13:33 | 7f7a065d245a: Waiting |
| 12-Jul-2018 14:13:33 | f96e6b25195f: Waiting |
| 12-Jul-2018 14:13:33 | c56153825175: Waiting |
| 12-Jul-2018 14:13:33 | ae620432889d: Waiting |
| 12-Jul-2018 14:13:33 | 0fbe2bcb1bf9: Waiting |
| 12-Jul-2018 14:13:33 | a2022691bf95: Waiting |
| 12-Jul-2018 14:13:33 | 59669fcdd5eb: Waiting |
| 12-Jul-2018 14:13:34 | 0418e9eae634: Layer already exists |
| 12-Jul-2018 14:13:34 | 43645af78199: Layer already exists |
| 12-Jul-2018 14:13:34 | 348f612055a3: Layer already exists |
| 12-Jul-2018 14:13:34 | 0cdb02ac1d86: Layer already exists |
| 12-Jul-2018 14:13:34 | f2297bdfc824: Layer already exists |
| 12-Jul-2018 14:13:34 | 0fbe2bcb1bf9: Layer already exists |
| 12-Jul-2018 14:13:34 | 59669fcdd5eb: Layer already exists |
| 12-Jul-2018 14:13:34 | 7f7a065d245a: Layer already exists |
| 12-Jul-2018 14:13:34 | f96e6b25195f: Layer already exists |
| 12-Jul-2018 14:13:34 | c56153825175: Layer already exists |
| 12-Jul-2018 14:13:34 | ae620432889d: Layer already exists |
| 12-Jul-2018 14:13:34 | a2022691bf95: Layer already exists |
| 12-Jul-2018 14:13:34 | browndog_v0.3.0: digest: sha256:e7848692da0aa93013ebe4f3e02dc423c4cb2c32b4a80947bfab62398726ce1d size: 2826 |
| 12-Jul-2018 14:13:35 | The push refers to repository [docker.io/clowder/extractors-msc-kidney] |
| 12-Jul-2018 14:13:35 | 348f612055a3: Preparing |
| 12-Jul-2018 14:13:35 | 0418e9eae634: Preparing |
| 12-Jul-2018 14:13:35 | 43645af78199: Preparing |
| 12-Jul-2018 14:13:35 | 0cdb02ac1d86: Preparing |
| 12-Jul-2018 14:13:35 | f2297bdfc824: Preparing |
| 12-Jul-2018 14:13:35 | 0fbe2bcb1bf9: Preparing |
| 12-Jul-2018 14:13:35 | 59669fcdd5eb: Preparing |
| 12-Jul-2018 14:13:35 | 7f7a065d245a: Preparing |
| 12-Jul-2018 14:13:35 | f96e6b25195f: Preparing |
| 12-Jul-2018 14:13:35 | c56153825175: Preparing |
| 12-Jul-2018 14:13:35 | ae620432889d: Preparing |
| 12-Jul-2018 14:13:35 | a2022691bf95: Preparing |
| 12-Jul-2018 14:13:35 | f96e6b25195f: Waiting |
| 12-Jul-2018 14:13:35 | c56153825175: Waiting |
| 12-Jul-2018 14:13:35 | ae620432889d: Waiting |
| 12-Jul-2018 14:13:35 | a2022691bf95: Waiting |
| 12-Jul-2018 14:13:35 | 0fbe2bcb1bf9: Waiting |
| 12-Jul-2018 14:13:35 | 59669fcdd5eb: Waiting |
| 12-Jul-2018 14:13:35 | 7f7a065d245a: Waiting |
| 12-Jul-2018 14:13:35 | 348f612055a3: Layer already exists |
| 12-Jul-2018 14:13:35 | 43645af78199: Layer already exists |
| 12-Jul-2018 14:13:35 | 0cdb02ac1d86: Layer already exists |
| 12-Jul-2018 14:13:35 | 0418e9eae634: Layer already exists |
| 12-Jul-2018 14:13:35 | f2297bdfc824: Layer already exists |
| 12-Jul-2018 14:13:35 | 7f7a065d245a: Layer already exists |
| 12-Jul-2018 14:13:35 | 59669fcdd5eb: Layer already exists |
| 12-Jul-2018 14:13:35 | c56153825175: Layer already exists |
| 12-Jul-2018 14:13:35 | f96e6b25195f: Layer already exists |
| 12-Jul-2018 14:13:35 | 0fbe2bcb1bf9: Layer already exists |
| 12-Jul-2018 14:13:36 | ae620432889d: Layer already exists |
| 12-Jul-2018 14:13:36 | a2022691bf95: Layer already exists |
| 12-Jul-2018 14:13:36 | latest: digest: sha256:e7848692da0aa93013ebe4f3e02dc423c4cb2c32b4a80947bfab62398726ce1d size: 2826 |
| 12-Jul-2018 14:13:36 | Untagged: 6184:latest |
| 12-Jul-2018 14:13:36 | Sending build context to Docker daemon 67.07kB |
| 12-Jul-2018 14:13:36 | |
| 12-Jul-2018 14:13:36 | Step 1/11 : FROM clowder/pyclowder:1 |
| 12-Jul-2018 14:13:36 | ---> d1a9e970ed30 |
| 12-Jul-2018 14:13:36 | Step 2/11 : MAINTAINER Yan Zhao <yanzhao3@illinois.edu> |
| 12-Jul-2018 14:13:36 | ---> Running in 70b00e8cff98 |
| 12-Jul-2018 14:13:37 | Removing intermediate container 70b00e8cff98 |
| 12-Jul-2018 14:13:37 | ---> 1b1daf5ef823 |
| 12-Jul-2018 14:13:37 | Step 3/11 : ENV RABBITMQ_URI="" RABBITMQ_EXCHANGE="clowder" RABBITMQ_VHOST="%2F" RABBITMQ_QUEUE="ncsa.msc.IsletExtractor" MONGO_URI="" DB_USERNAME="" DB_PASSWORD="" MAIN_SCRIPT="extractor-Islet.py" |
| 12-Jul-2018 14:13:37 | ---> Running in f2c863e74fbe |
| 12-Jul-2018 14:13:38 | Removing intermediate container f2c863e74fbe |
| 12-Jul-2018 14:13:38 | ---> 09f8b6e1e832 |
| 12-Jul-2018 14:13:38 | Step 4/11 : USER root |
| 12-Jul-2018 14:13:38 | ---> Running in da285e473453 |
| 12-Jul-2018 14:13:38 | Removing intermediate container da285e473453 |
| 12-Jul-2018 14:13:38 | ---> 493b13c7548d |
| 12-Jul-2018 14:13:38 | Step 5/11 : COPY requirements.txt /home/clowder/ |
| 12-Jul-2018 14:13:39 | ---> 480255bc34dc |
| 12-Jul-2018 14:13:39 | Step 6/11 : RUN pip install --upgrade pip |
| 12-Jul-2018 14:13:39 | ---> Running in 0d6392a002ac |
| 12-Jul-2018 14:13:41 | Collecting pip |
| 12-Jul-2018 14:13:41 | Downloading https://files.pythonhosted.org/packages/0f/74/ecd13431bcc456ed390b44c8a6e917c1820365cbebcb6a8974d1cd045ab4/pip-10.0.1-py2.py3-none-any.whl (1.3MB) |
| 12-Jul-2018 14:13:41 | Installing collected packages: pip |
| 12-Jul-2018 14:13:41 | Found existing installation: pip 8.1.1 |
| 12-Jul-2018 14:13:41 | Not uninstalling pip at /usr/lib/python2.7/dist-packages, outside environment /usr |
| 12-Jul-2018 14:13:42 | Successfully installed pip-10.0.1 |
| 12-Jul-2018 14:13:44 | Removing intermediate container 0d6392a002ac |
| 12-Jul-2018 14:13:44 | ---> 81b12ee1fb0a |
| 12-Jul-2018 14:13:44 | Step 7/11 : RUN pip install -r /home/clowder/requirements.txt |
| 12-Jul-2018 14:13:44 | ---> Running in 5c14543fc9b1 |
| 12-Jul-2018 14:13:45 | Requirement already satisfied: argparse==1.2.1 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 1)) (1.2.1) |
| 12-Jul-2018 14:13:45 | Collecting openpyxl==1.6.2 (from -r /home/clowder/requirements.txt (line 2)) |
| 12-Jul-2018 14:13:45 | Downloading https://files.pythonhosted.org/packages/96/53/3782b6cc03500c0949a7ba9dba0c70da95d63d0ed4a04446123987ff983f/openpyxl-1.6.2.tar.gz (199kB) |
| 12-Jul-2018 14:13:46 | Collecting pika==0.9.14 (from -r /home/clowder/requirements.txt (line 3)) |
| 12-Jul-2018 14:13:46 | Downloading https://files.pythonhosted.org/packages/2b/5b/4c5b6eafc63e0985b926267579a1e2534af70df0a45932f0c23fcc5f1b88/pika-0.9.14.tar.gz (72kB) |
| 12-Jul-2018 14:13:46 | Collecting pymongo==3.2.1 (from -r /home/clowder/requirements.txt (line 4)) |
| 12-Jul-2018 14:13:46 | Downloading https://files.pythonhosted.org/packages/d7/94/9aa9ddd3e885caa307c0db8af5a1f5d266d3db44e1ae89bd4e14841ab8d0/pymongo-3.2.1.tar.gz (647kB) |
| 12-Jul-2018 14:13:47 | Collecting pytz==2014.3 (from -r /home/clowder/requirements.txt (line 5)) |
| 12-Jul-2018 14:13:47 | Downloading https://files.pythonhosted.org/packages/e2/8d/af599c0388f46775c6b039d8b9c4acda2f6ef86787312a35291fff4cb7ca/pytz-2014.3.tar.bz2 (158kB) |
| 12-Jul-2018 14:13:47 | Collecting requests==2.2.1 (from -r /home/clowder/requirements.txt (line 6)) |
| 12-Jul-2018 14:13:47 | Downloading https://files.pythonhosted.org/packages/7d/15/6efffc6aee666e1456852c2bf1d483b46bf971a2d509b35a98fc3eae1c60/requests-2.2.1-py2.py3-none-any.whl (625kB) |
| 12-Jul-2018 14:13:47 | Requirement already satisfied: wsgiref==0.1.2 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 7)) (0.1.2) |
| 12-Jul-2018 14:13:47 | Collecting xlrd==0.9.3 (from -r /home/clowder/requirements.txt (line 8)) |
| 12-Jul-2018 14:13:48 | Downloading https://files.pythonhosted.org/packages/b1/13/6fbcb55fef0b34c70cb3753741eaafc0e91553a1318653587a7d145caf15/xlrd-0.9.3.tar.gz (178kB) |
| 12-Jul-2018 14:13:48 | Installing collected packages: openpyxl, pika, pymongo, pytz, requests, xlrd |
| 12-Jul-2018 14:13:48 | Running setup.py install for openpyxl: started |
| 12-Jul-2018 14:13:48 | Running setup.py install for openpyxl: finished with status 'done' |
| 12-Jul-2018 14:13:48 | Found existing installation: pika 0.11.0 |
| 12-Jul-2018 14:13:48 | Uninstalling pika-0.11.0: |
| 12-Jul-2018 14:13:51 | Successfully uninstalled pika-0.11.0 |
| 12-Jul-2018 14:13:51 | Running setup.py install for pika: started |
| 12-Jul-2018 14:13:52 | Running setup.py install for pika: finished with status 'done' |
| 12-Jul-2018 14:13:52 | Running setup.py install for pymongo: started |
| 12-Jul-2018 14:13:52 | Running setup.py install for pymongo: finished with status 'done' |
| 12-Jul-2018 14:13:52 | Running setup.py install for pytz: started |
| 12-Jul-2018 14:13:52 | Running setup.py install for pytz: finished with status 'done' |
| 12-Jul-2018 14:13:52 | Found existing installation: requests 2.18.4 |
| 12-Jul-2018 14:13:52 | Uninstalling requests-2.18.4: |
| 12-Jul-2018 14:13:56 | Successfully uninstalled requests-2.18.4 |
| 12-Jul-2018 14:13:56 | Running setup.py install for xlrd: started |
| 12-Jul-2018 14:13:56 | Running setup.py install for xlrd: finished with status 'done' |
| 12-Jul-2018 14:13:56 | Successfully installed openpyxl-1.6.2 pika-0.9.14 pymongo-3.2.1 pytz-2014.3 requests-2.2.1 xlrd-0.9.3 |
| 12-Jul-2018 14:13:58 | Removing intermediate container 5c14543fc9b1 |
| 12-Jul-2018 14:13:58 | ---> 5b3bd244f33c |
| 12-Jul-2018 14:13:58 | Step 8/11 : USER clowder |
| 12-Jul-2018 14:13:58 | ---> Running in 600b2e66c4c4 |
| 12-Jul-2018 14:13:59 | Removing intermediate container 600b2e66c4c4 |
| 12-Jul-2018 14:13:59 | ---> b540b99ca2bc |
| 12-Jul-2018 14:13:59 | Step 9/11 : COPY entrypoint.sh *.py *.json /home/clowder/ |
| 12-Jul-2018 14:14:01 | ---> 72968d1ec1f9 |
| 12-Jul-2018 14:14:01 | Step 10/11 : ENTRYPOINT ["/home/clowder/entrypoint.sh"] |
| 12-Jul-2018 14:14:01 | ---> Running in 1ee8787a68f3 |
| 12-Jul-2018 14:14:01 | Removing intermediate container 1ee8787a68f3 |
| 12-Jul-2018 14:14:01 | ---> 024fb0ae82fa |
| 12-Jul-2018 14:14:01 | Step 11/11 : CMD ["extractor"] |
| 12-Jul-2018 14:14:01 | ---> Running in 237a25783b4a |
| 12-Jul-2018 14:14:02 | Removing intermediate container 237a25783b4a |
| 12-Jul-2018 14:14:02 | ---> 01179f1dfd70 |
| 12-Jul-2018 14:14:02 | Successfully built 01179f1dfd70 |
| 12-Jul-2018 14:14:02 | Successfully tagged 6184:latest |
| 12-Jul-2018 14:14:02 | The push refers to repository [docker.io/clowder/extractors-msc-islet] |
| 12-Jul-2018 14:14:02 | 7df031fbf90f: Preparing |
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| 12-Jul-2018 14:14:03 | 0cdb02ac1d86: Layer already exists |
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| 12-Jul-2018 14:14:03 | 0fbe2bcb1bf9: Layer already exists |
| 12-Jul-2018 14:14:08 | 59669fcdd5eb: Layer already exists |
| 12-Jul-2018 14:14:08 | f62e4ab8310e: Pushed |
| 12-Jul-2018 14:14:08 | 7f7a065d245a: Layer already exists |
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| 12-Jul-2018 14:14:09 | c56153825175: Layer already exists |
| 12-Jul-2018 14:14:09 | ae620432889d: Layer already exists |
| 12-Jul-2018 14:14:09 | cc459a36f3f4: Pushed |
| 12-Jul-2018 14:14:09 | a2022691bf95: Layer already exists |
| 12-Jul-2018 14:14:09 | 7df031fbf90f: Pushed |
| 12-Jul-2018 14:14:09 | 220fcddb886b: Pushed |
| 12-Jul-2018 14:14:13 | browndog_v0.2.0: digest: sha256:5d6ae4fc3fe144d68ff5442056ea5376ca5190974604ea79c17f1691d6dbc6ba size: 3031 |
| 12-Jul-2018 14:14:13 | The push refers to repository [docker.io/clowder/extractors-msc-islet] |
| 12-Jul-2018 14:14:13 | 7df031fbf90f: Preparing |
| 12-Jul-2018 14:14:13 | cc459a36f3f4: Preparing |
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| 12-Jul-2018 14:14:13 | 59669fcdd5eb: Waiting |
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| 12-Jul-2018 14:14:13 | c56153825175: Waiting |
| 12-Jul-2018 14:14:13 | ae620432889d: Waiting |
| 12-Jul-2018 14:14:13 | a2022691bf95: Waiting |
| 12-Jul-2018 14:14:13 | f2297bdfc824: Waiting |
| 12-Jul-2018 14:14:13 | 0fbe2bcb1bf9: Waiting |
| 12-Jul-2018 14:14:14 | 7df031fbf90f: Layer already exists |
| 12-Jul-2018 14:14:14 | 0cdb02ac1d86: Layer already exists |
| 12-Jul-2018 14:14:14 | cc459a36f3f4: Layer already exists |
| 12-Jul-2018 14:14:14 | f62e4ab8310e: Layer already exists |
| 12-Jul-2018 14:14:14 | 220fcddb886b: Layer already exists |
| 12-Jul-2018 14:14:14 | f2297bdfc824: Layer already exists |
| 12-Jul-2018 14:14:14 | 0fbe2bcb1bf9: Layer already exists |
| 12-Jul-2018 14:14:14 | 59669fcdd5eb: Layer already exists |
| 12-Jul-2018 14:14:14 | 7f7a065d245a: Layer already exists |
| 12-Jul-2018 14:14:14 | f96e6b25195f: Layer already exists |
| 12-Jul-2018 14:14:14 | c56153825175: Layer already exists |
| 12-Jul-2018 14:14:14 | a2022691bf95: Layer already exists |
| 12-Jul-2018 14:14:14 | ae620432889d: Layer already exists |
| 12-Jul-2018 14:14:15 | browndog_v0.3.0: digest: sha256:5d6ae4fc3fe144d68ff5442056ea5376ca5190974604ea79c17f1691d6dbc6ba size: 3031 |
| 12-Jul-2018 14:14:15 | The push refers to repository [docker.io/clowder/extractors-msc-islet] |
| 12-Jul-2018 14:14:15 | 7df031fbf90f: Preparing |
| 12-Jul-2018 14:14:15 | cc459a36f3f4: Preparing |
| 12-Jul-2018 14:14:15 | 220fcddb886b: Preparing |
| 12-Jul-2018 14:14:15 | f62e4ab8310e: Preparing |
| 12-Jul-2018 14:14:15 | 0cdb02ac1d86: Preparing |
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| 12-Jul-2018 14:14:15 | 0fbe2bcb1bf9: Preparing |
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| 12-Jul-2018 14:14:15 | c56153825175: Preparing |
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| 12-Jul-2018 14:14:15 | a2022691bf95: Preparing |
| 12-Jul-2018 14:14:15 | f2297bdfc824: Waiting |
| 12-Jul-2018 14:14:15 | 0fbe2bcb1bf9: Waiting |
| 12-Jul-2018 14:14:15 | 59669fcdd5eb: Waiting |
| 12-Jul-2018 14:14:15 | 7f7a065d245a: Waiting |
| 12-Jul-2018 14:14:15 | f96e6b25195f: Waiting |
| 12-Jul-2018 14:14:15 | c56153825175: Waiting |
| 12-Jul-2018 14:14:15 | ae620432889d: Waiting |
| 12-Jul-2018 14:14:15 | a2022691bf95: Waiting |
| 12-Jul-2018 14:14:15 | 220fcddb886b: Layer already exists |
| 12-Jul-2018 14:14:15 | 0cdb02ac1d86: Layer already exists |
| 12-Jul-2018 14:14:15 | cc459a36f3f4: Layer already exists |
| 12-Jul-2018 14:14:15 | f62e4ab8310e: Layer already exists |
| 12-Jul-2018 14:14:15 | 7df031fbf90f: Layer already exists |
| 12-Jul-2018 14:14:16 | f2297bdfc824: Layer already exists |
| 12-Jul-2018 14:14:16 | 59669fcdd5eb: Layer already exists |
| 12-Jul-2018 14:14:16 | f96e6b25195f: Layer already exists |
| 12-Jul-2018 14:14:16 | 7f7a065d245a: Layer already exists |
| 12-Jul-2018 14:14:16 | 0fbe2bcb1bf9: Layer already exists |
| 12-Jul-2018 14:14:16 | c56153825175: Layer already exists |
| 12-Jul-2018 14:14:16 | ae620432889d: Layer already exists |
| 12-Jul-2018 14:14:16 | a2022691bf95: Layer already exists |
| 12-Jul-2018 14:14:16 | latest: digest: sha256:5d6ae4fc3fe144d68ff5442056ea5376ca5190974604ea79c17f1691d6dbc6ba size: 3031 |
| 12-Jul-2018 14:14:16 | Untagged: 6184:latest |
| 12-Jul-2018 14:14:16 | Sending build context to Docker daemon 66.05kB |
| 12-Jul-2018 14:14:16 | |
| 12-Jul-2018 14:14:16 | Step 1/11 : FROM clowder/pyclowder:1 |
| 12-Jul-2018 14:14:16 | ---> d1a9e970ed30 |
| 12-Jul-2018 14:14:16 | Step 2/11 : MAINTAINER Yan Zhao <yanzhao3@illinois.edu> |
| 12-Jul-2018 14:14:16 | ---> Using cache |
| 12-Jul-2018 14:14:16 | ---> 1b1daf5ef823 |
| 12-Jul-2018 14:14:16 | Step 3/11 : ENV RABBITMQ_URI="" RABBITMQ_EXCHANGE="clowder" RABBITMQ_VHOST="%2F" RABBITMQ_QUEUE="ncsa.msc.ChemCBCExtractor" MONGO_URI="" DB_USERNAME="" DB_PASSWORD="" MAIN_SCRIPT="extractor-Chem.py" |
| 12-Jul-2018 14:14:17 | ---> Running in 7dc984ca47fb |
| 12-Jul-2018 14:14:18 | Removing intermediate container 7dc984ca47fb |
| 12-Jul-2018 14:14:18 | ---> 587fcd69d49f |
| 12-Jul-2018 14:14:18 | Step 4/11 : USER root |
| 12-Jul-2018 14:14:18 | ---> Running in cb4b5ae00f74 |
| 12-Jul-2018 14:14:18 | Removing intermediate container cb4b5ae00f74 |
| 12-Jul-2018 14:14:18 | ---> f69145a1d0df |
| 12-Jul-2018 14:14:18 | Step 5/11 : COPY requirements.txt /home/clowder/ |
| 12-Jul-2018 14:14:19 | ---> e1d7194a4c4c |
| 12-Jul-2018 14:14:19 | Step 6/11 : RUN pip install --upgrade pip |
| 12-Jul-2018 14:14:19 | ---> Running in 27ea2b34527d |
| 12-Jul-2018 14:14:20 | Collecting pip |
| 12-Jul-2018 14:14:21 | Downloading https://files.pythonhosted.org/packages/0f/74/ecd13431bcc456ed390b44c8a6e917c1820365cbebcb6a8974d1cd045ab4/pip-10.0.1-py2.py3-none-any.whl (1.3MB) |
| 12-Jul-2018 14:14:21 | Installing collected packages: pip |
| 12-Jul-2018 14:14:21 | Found existing installation: pip 8.1.1 |
| 12-Jul-2018 14:14:21 | Not uninstalling pip at /usr/lib/python2.7/dist-packages, outside environment /usr |
| 12-Jul-2018 14:14:21 | Successfully installed pip-10.0.1 |
| 12-Jul-2018 14:14:23 | Removing intermediate container 27ea2b34527d |
| 12-Jul-2018 14:14:23 | ---> 67089b72ac0b |
| 12-Jul-2018 14:14:23 | Step 7/11 : RUN pip install -r /home/clowder/requirements.txt |
| 12-Jul-2018 14:14:24 | ---> Running in 1ef9ed99c84a |
| 12-Jul-2018 14:14:24 | Requirement already satisfied: argparse==1.2.1 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 1)) (1.2.1) |
| 12-Jul-2018 14:14:24 | Collecting openpyxl==1.6.2 (from -r /home/clowder/requirements.txt (line 2)) |
| 12-Jul-2018 14:14:25 | Downloading https://files.pythonhosted.org/packages/96/53/3782b6cc03500c0949a7ba9dba0c70da95d63d0ed4a04446123987ff983f/openpyxl-1.6.2.tar.gz (199kB) |
| 12-Jul-2018 14:14:25 | Collecting pika==0.9.14 (from -r /home/clowder/requirements.txt (line 3)) |
| 12-Jul-2018 14:14:25 | Downloading https://files.pythonhosted.org/packages/2b/5b/4c5b6eafc63e0985b926267579a1e2534af70df0a45932f0c23fcc5f1b88/pika-0.9.14.tar.gz (72kB) |
| 12-Jul-2018 14:14:25 | Collecting pymongo==3.2.1 (from -r /home/clowder/requirements.txt (line 4)) |
| 12-Jul-2018 14:14:26 | Downloading https://files.pythonhosted.org/packages/d7/94/9aa9ddd3e885caa307c0db8af5a1f5d266d3db44e1ae89bd4e14841ab8d0/pymongo-3.2.1.tar.gz (647kB) |
| 12-Jul-2018 14:14:26 | Collecting pytz==2014.3 (from -r /home/clowder/requirements.txt (line 5)) |
| 12-Jul-2018 14:14:26 | Downloading https://files.pythonhosted.org/packages/e2/8d/af599c0388f46775c6b039d8b9c4acda2f6ef86787312a35291fff4cb7ca/pytz-2014.3.tar.bz2 (158kB) |
| 12-Jul-2018 14:14:27 | Collecting requests==2.2.1 (from -r /home/clowder/requirements.txt (line 6)) |
| 12-Jul-2018 14:14:27 | Downloading https://files.pythonhosted.org/packages/7d/15/6efffc6aee666e1456852c2bf1d483b46bf971a2d509b35a98fc3eae1c60/requests-2.2.1-py2.py3-none-any.whl (625kB) |
| 12-Jul-2018 14:14:27 | Requirement already satisfied: wsgiref==0.1.2 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 7)) (0.1.2) |
| 12-Jul-2018 14:14:27 | Collecting xlrd==0.9.3 (from -r /home/clowder/requirements.txt (line 8)) |
| 12-Jul-2018 14:14:27 | Downloading https://files.pythonhosted.org/packages/b1/13/6fbcb55fef0b34c70cb3753741eaafc0e91553a1318653587a7d145caf15/xlrd-0.9.3.tar.gz (178kB) |
| 12-Jul-2018 14:14:27 | Installing collected packages: openpyxl, pika, pymongo, pytz, requests, xlrd |
| 12-Jul-2018 14:14:27 | Running setup.py install for openpyxl: started |
| 12-Jul-2018 14:14:27 | Running setup.py install for openpyxl: finished with status 'done' |
| 12-Jul-2018 14:14:27 | Found existing installation: pika 0.11.0 |
| 12-Jul-2018 14:14:27 | Uninstalling pika-0.11.0: |
| 12-Jul-2018 14:14:29 | Successfully uninstalled pika-0.11.0 |
| 12-Jul-2018 14:14:29 | Running setup.py install for pika: started |
| 12-Jul-2018 14:14:29 | Running setup.py install for pika: finished with status 'done' |
| 12-Jul-2018 14:14:29 | Running setup.py install for pymongo: started |
| 12-Jul-2018 14:14:30 | Running setup.py install for pymongo: finished with status 'done' |
| 12-Jul-2018 14:14:30 | Running setup.py install for pytz: started |
| 12-Jul-2018 14:14:30 | Running setup.py install for pytz: finished with status 'done' |
| 12-Jul-2018 14:14:30 | Found existing installation: requests 2.18.4 |
| 12-Jul-2018 14:14:30 | Uninstalling requests-2.18.4: |
| 12-Jul-2018 14:14:31 | Successfully uninstalled requests-2.18.4 |
| 12-Jul-2018 14:14:31 | Running setup.py install for xlrd: started |
| 12-Jul-2018 14:14:32 | Running setup.py install for xlrd: finished with status 'done' |
| 12-Jul-2018 14:14:32 | Successfully installed openpyxl-1.6.2 pika-0.9.14 pymongo-3.2.1 pytz-2014.3 requests-2.2.1 xlrd-0.9.3 |
| 12-Jul-2018 14:14:33 | Removing intermediate container 1ef9ed99c84a |
| 12-Jul-2018 14:14:33 | ---> cac81b86eccc |
| 12-Jul-2018 14:14:33 | Step 8/11 : USER clowder |
| 12-Jul-2018 14:14:34 | ---> Running in 1e3c9ff38398 |
| 12-Jul-2018 14:14:34 | Removing intermediate container 1e3c9ff38398 |
| 12-Jul-2018 14:14:34 | ---> 65c3b7f81fb7 |
| 12-Jul-2018 14:14:34 | Step 9/11 : COPY entrypoint.sh *.py *.json /home/clowder/ |
| 12-Jul-2018 14:14:35 | ---> 92a67dbd3288 |
| 12-Jul-2018 14:14:35 | Step 10/11 : ENTRYPOINT ["/home/clowder/entrypoint.sh"] |
| 12-Jul-2018 14:14:35 | ---> Running in d6df8c0a1602 |
| 12-Jul-2018 14:14:35 | Removing intermediate container d6df8c0a1602 |
| 12-Jul-2018 14:14:35 | ---> 649a7eeb5b73 |
| 12-Jul-2018 14:14:35 | Step 11/11 : CMD ["extractor"] |
| 12-Jul-2018 14:14:35 | ---> Running in 4301aa7009a3 |
| 12-Jul-2018 14:14:36 | Removing intermediate container 4301aa7009a3 |
| 12-Jul-2018 14:14:36 | ---> 880e242c9d2c |
| 12-Jul-2018 14:14:36 | Successfully built 880e242c9d2c |
| 12-Jul-2018 14:14:36 | Successfully tagged 6184:latest |
| 12-Jul-2018 14:14:36 | The push refers to repository [docker.io/clowder/extractors-msc-chemcbc] |
| 12-Jul-2018 14:14:36 | a0db69d5072d: Preparing |
| 12-Jul-2018 14:14:36 | 0892292c24bf: Preparing |
| 12-Jul-2018 14:14:36 | 4ba8d14a2dba: Preparing |
| 12-Jul-2018 14:14:36 | aef0cd477448: Preparing |
| 12-Jul-2018 14:14:36 | 0cdb02ac1d86: Preparing |
| 12-Jul-2018 14:14:36 | f2297bdfc824: Preparing |
| 12-Jul-2018 14:14:36 | 0fbe2bcb1bf9: Preparing |
| 12-Jul-2018 14:14:36 | 59669fcdd5eb: Preparing |
| 12-Jul-2018 14:14:36 | 7f7a065d245a: Preparing |
| 12-Jul-2018 14:14:36 | f96e6b25195f: Preparing |
| 12-Jul-2018 14:14:36 | c56153825175: Preparing |
| 12-Jul-2018 14:14:36 | ae620432889d: Preparing |
| 12-Jul-2018 14:14:36 | a2022691bf95: Preparing |
| 12-Jul-2018 14:14:36 | f2297bdfc824: Waiting |
| 12-Jul-2018 14:14:36 | 0fbe2bcb1bf9: Waiting |
| 12-Jul-2018 14:14:36 | 59669fcdd5eb: Waiting |
| 12-Jul-2018 14:14:36 | 7f7a065d245a: Waiting |
| 12-Jul-2018 14:14:36 | f96e6b25195f: Waiting |
| 12-Jul-2018 14:14:36 | c56153825175: Waiting |
| 12-Jul-2018 14:14:36 | ae620432889d: Waiting |
| 12-Jul-2018 14:14:37 | 0cdb02ac1d86: Layer already exists |
| 12-Jul-2018 14:14:37 | f2297bdfc824: Layer already exists |
| 12-Jul-2018 14:14:37 | 0fbe2bcb1bf9: Layer already exists |
| 12-Jul-2018 14:14:37 | 59669fcdd5eb: Layer already exists |
| 12-Jul-2018 14:14:37 | 7f7a065d245a: Layer already exists |
| 12-Jul-2018 14:14:37 | aef0cd477448: Pushed |
| 12-Jul-2018 14:14:37 | f96e6b25195f: Layer already exists |
| 12-Jul-2018 14:14:38 | c56153825175: Layer already exists |
| 12-Jul-2018 14:14:38 | ae620432889d: Layer already exists |
| 12-Jul-2018 14:14:38 | a2022691bf95: Layer already exists |
| 12-Jul-2018 14:14:38 | a0db69d5072d: Pushed |
| 12-Jul-2018 14:14:38 | 0892292c24bf: Pushed |
| 12-Jul-2018 14:14:39 | 4ba8d14a2dba: Pushed |
| 12-Jul-2018 14:14:41 | browndog_v0.2.0: digest: sha256:69342f3fbd6a6c066926566266b085fa21ad40270dcb31605d2c2ba4a8e2d0ac size: 3031 |
| 12-Jul-2018 14:14:41 | The push refers to repository [docker.io/clowder/extractors-msc-chemcbc] |
| 12-Jul-2018 14:14:42 | a0db69d5072d: Preparing |
| 12-Jul-2018 14:14:42 | 0892292c24bf: Preparing |
| 12-Jul-2018 14:14:42 | 4ba8d14a2dba: Preparing |
| 12-Jul-2018 14:14:42 | aef0cd477448: Preparing |
| 12-Jul-2018 14:14:42 | 0cdb02ac1d86: Preparing |
| 12-Jul-2018 14:14:42 | f2297bdfc824: Preparing |
| 12-Jul-2018 14:14:42 | 0fbe2bcb1bf9: Preparing |
| 12-Jul-2018 14:14:42 | 59669fcdd5eb: Preparing |
| 12-Jul-2018 14:14:42 | 7f7a065d245a: Preparing |
| 12-Jul-2018 14:14:42 | f96e6b25195f: Preparing |
| 12-Jul-2018 14:14:42 | 0fbe2bcb1bf9: Waiting |
| 12-Jul-2018 14:14:42 | f2297bdfc824: Waiting |
| 12-Jul-2018 14:14:42 | 59669fcdd5eb: Waiting |
| 12-Jul-2018 14:14:42 | 7f7a065d245a: Waiting |
| 12-Jul-2018 14:14:42 | c56153825175: Preparing |
| 12-Jul-2018 14:14:42 | ae620432889d: Preparing |
| 12-Jul-2018 14:14:42 | a2022691bf95: Preparing |
| 12-Jul-2018 14:14:42 | f96e6b25195f: Waiting |
| 12-Jul-2018 14:14:42 | ae620432889d: Waiting |
| 12-Jul-2018 14:14:42 | c56153825175: Waiting |
| 12-Jul-2018 14:14:42 | a2022691bf95: Waiting |
| 12-Jul-2018 14:14:42 | 4ba8d14a2dba: Layer already exists |
| 12-Jul-2018 14:14:42 | aef0cd477448: Layer already exists |
| 12-Jul-2018 14:14:42 | a0db69d5072d: Layer already exists |
| 12-Jul-2018 14:14:42 | 0cdb02ac1d86: Layer already exists |
| 12-Jul-2018 14:14:42 | 0892292c24bf: Layer already exists |
| 12-Jul-2018 14:14:42 | f2297bdfc824: Layer already exists |
| 12-Jul-2018 14:14:42 | 7f7a065d245a: Layer already exists |
| 12-Jul-2018 14:14:42 | 59669fcdd5eb: Layer already exists |
| 12-Jul-2018 14:14:42 | 0fbe2bcb1bf9: Layer already exists |
| 12-Jul-2018 14:14:42 | f96e6b25195f: Layer already exists |
| 12-Jul-2018 14:14:42 | c56153825175: Layer already exists |
| 12-Jul-2018 14:14:42 | ae620432889d: Layer already exists |
| 12-Jul-2018 14:14:42 | a2022691bf95: Layer already exists |
| 12-Jul-2018 14:14:43 | browndog_v0.3.0: digest: sha256:69342f3fbd6a6c066926566266b085fa21ad40270dcb31605d2c2ba4a8e2d0ac size: 3031 |
| 12-Jul-2018 14:14:43 | The push refers to repository [docker.io/clowder/extractors-msc-chemcbc] |
| 12-Jul-2018 14:14:43 | a0db69d5072d: Preparing |
| 12-Jul-2018 14:14:43 | 0892292c24bf: Preparing |
| 12-Jul-2018 14:14:43 | 4ba8d14a2dba: Preparing |
| 12-Jul-2018 14:14:43 | aef0cd477448: Preparing |
| 12-Jul-2018 14:14:43 | 0cdb02ac1d86: Preparing |
| 12-Jul-2018 14:14:43 | f2297bdfc824: Preparing |
| 12-Jul-2018 14:14:43 | 0fbe2bcb1bf9: Preparing |
| 12-Jul-2018 14:14:43 | 59669fcdd5eb: Preparing |
| 12-Jul-2018 14:14:43 | 7f7a065d245a: Preparing |
| 12-Jul-2018 14:14:43 | f96e6b25195f: Preparing |
| 12-Jul-2018 14:14:43 | c56153825175: Preparing |
| 12-Jul-2018 14:14:43 | ae620432889d: Preparing |
| 12-Jul-2018 14:14:43 | a2022691bf95: Preparing |
| 12-Jul-2018 14:14:43 | f2297bdfc824: Waiting |
| 12-Jul-2018 14:14:43 | 0fbe2bcb1bf9: Waiting |
| 12-Jul-2018 14:14:43 | 59669fcdd5eb: Waiting |
| 12-Jul-2018 14:14:43 | 7f7a065d245a: Waiting |
| 12-Jul-2018 14:14:43 | f96e6b25195f: Waiting |
| 12-Jul-2018 14:14:43 | c56153825175: Waiting |
| 12-Jul-2018 14:14:43 | ae620432889d: Waiting |
| 12-Jul-2018 14:14:43 | a2022691bf95: Waiting |
| 12-Jul-2018 14:14:43 | 0892292c24bf: Layer already exists |
| 12-Jul-2018 14:14:43 | aef0cd477448: Layer already exists |
| 12-Jul-2018 14:14:43 | 4ba8d14a2dba: Layer already exists |
| 12-Jul-2018 14:14:43 | 0cdb02ac1d86: Layer already exists |
| 12-Jul-2018 14:14:43 | a0db69d5072d: Layer already exists |
| 12-Jul-2018 14:14:44 | 0fbe2bcb1bf9: Layer already exists |
| 12-Jul-2018 14:14:44 | 59669fcdd5eb: Layer already exists |
| 12-Jul-2018 14:14:44 | 7f7a065d245a: Layer already exists |
| 12-Jul-2018 14:14:44 | f2297bdfc824: Layer already exists |
| 12-Jul-2018 14:14:44 | f96e6b25195f: Layer already exists |
| 12-Jul-2018 14:14:44 | c56153825175: Layer already exists |
| 12-Jul-2018 14:14:44 | a2022691bf95: Layer already exists |
| 12-Jul-2018 14:14:44 | ae620432889d: Layer already exists |
| 12-Jul-2018 14:14:44 | latest: digest: sha256:69342f3fbd6a6c066926566266b085fa21ad40270dcb31605d2c2ba4a8e2d0ac size: 3031 |
| 12-Jul-2018 14:14:44 | Untagged: 6184:latest |
| 12-Jul-2018 14:14:44 | Sending build context to Docker daemon 198.1kB |
| 12-Jul-2018 14:14:44 | |
| 12-Jul-2018 14:14:44 | Step 1/11 : FROM clowder/pyclowder:1 |
| 12-Jul-2018 14:14:44 | ---> d1a9e970ed30 |
| 12-Jul-2018 14:14:44 | Step 2/11 : MAINTAINER Yan Zhao <yanzhao3@illinois.edu> |
| 12-Jul-2018 14:14:44 | ---> Using cache |
| 12-Jul-2018 14:14:44 | ---> 1b1daf5ef823 |
| 12-Jul-2018 14:14:44 | Step 3/11 : ENV RABBITMQ_URI="" RABBITMQ_EXCHANGE="clowder" RABBITMQ_VHOST="%2F" RABBITMQ_QUEUE="ncsa.msc.MonitorExtractor" MONGO_URI="" DB_USERNAME="" DB_PASSWORD="" MAIN_SCRIPT="extractor-Monitor.py" |
| 12-Jul-2018 14:14:45 | ---> Running in 5d61d18368e5 |
| 12-Jul-2018 14:14:45 | Removing intermediate container 5d61d18368e5 |
| 12-Jul-2018 14:14:45 | ---> 0493d953fac7 |
| 12-Jul-2018 14:14:45 | Step 4/11 : USER root |
| 12-Jul-2018 14:14:45 | ---> Running in 0266a705fe8a |
| 12-Jul-2018 14:14:45 | Removing intermediate container 0266a705fe8a |
| 12-Jul-2018 14:14:45 | ---> 569648ccc2f2 |
| 12-Jul-2018 14:14:45 | Step 5/11 : COPY requirements.txt /home/clowder/ |
| 12-Jul-2018 14:14:46 | ---> 6f39f63a0774 |
| 12-Jul-2018 14:14:46 | Step 6/11 : RUN pip install --upgrade pip |
| 12-Jul-2018 14:14:46 | ---> Running in 17bb03d48e27 |
| 12-Jul-2018 14:14:47 | Collecting pip |
| 12-Jul-2018 14:14:47 | Downloading https://files.pythonhosted.org/packages/0f/74/ecd13431bcc456ed390b44c8a6e917c1820365cbebcb6a8974d1cd045ab4/pip-10.0.1-py2.py3-none-any.whl (1.3MB) |
| 12-Jul-2018 14:14:47 | Installing collected packages: pip |
| 12-Jul-2018 14:14:47 | Found existing installation: pip 8.1.1 |
| 12-Jul-2018 14:14:47 | Not uninstalling pip at /usr/lib/python2.7/dist-packages, outside environment /usr |
| 12-Jul-2018 14:14:48 | Successfully installed pip-10.0.1 |
| 12-Jul-2018 14:14:49 | Removing intermediate container 17bb03d48e27 |
| 12-Jul-2018 14:14:49 | ---> 4276a247af28 |
| 12-Jul-2018 14:14:49 | Step 7/11 : RUN pip install -r /home/clowder/requirements.txt |
| 12-Jul-2018 14:14:50 | ---> Running in de0c0175851b |
| 12-Jul-2018 14:14:50 | Requirement already satisfied: argparse==1.2.1 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 1)) (1.2.1) |
| 12-Jul-2018 14:14:50 | Collecting openpyxl==1.6.2 (from -r /home/clowder/requirements.txt (line 2)) |
| 12-Jul-2018 14:14:50 | Downloading https://files.pythonhosted.org/packages/96/53/3782b6cc03500c0949a7ba9dba0c70da95d63d0ed4a04446123987ff983f/openpyxl-1.6.2.tar.gz (199kB) |
| 12-Jul-2018 14:14:51 | Collecting pika==0.9.14 (from -r /home/clowder/requirements.txt (line 3)) |
| 12-Jul-2018 14:14:51 | Downloading https://files.pythonhosted.org/packages/2b/5b/4c5b6eafc63e0985b926267579a1e2534af70df0a45932f0c23fcc5f1b88/pika-0.9.14.tar.gz (72kB) |
| 12-Jul-2018 14:14:51 | Collecting pymongo==3.2.1 (from -r /home/clowder/requirements.txt (line 4)) |
| 12-Jul-2018 14:14:52 | Downloading https://files.pythonhosted.org/packages/d7/94/9aa9ddd3e885caa307c0db8af5a1f5d266d3db44e1ae89bd4e14841ab8d0/pymongo-3.2.1.tar.gz (647kB) |
| 12-Jul-2018 14:14:52 | Collecting pytz==2014.3 (from -r /home/clowder/requirements.txt (line 5)) |
| 12-Jul-2018 14:14:52 | Downloading https://files.pythonhosted.org/packages/e2/8d/af599c0388f46775c6b039d8b9c4acda2f6ef86787312a35291fff4cb7ca/pytz-2014.3.tar.bz2 (158kB) |
| 12-Jul-2018 14:14:53 | Collecting requests==2.2.1 (from -r /home/clowder/requirements.txt (line 6)) |
| 12-Jul-2018 14:14:53 | Downloading https://files.pythonhosted.org/packages/7d/15/6efffc6aee666e1456852c2bf1d483b46bf971a2d509b35a98fc3eae1c60/requests-2.2.1-py2.py3-none-any.whl (625kB) |
| 12-Jul-2018 14:14:53 | Requirement already satisfied: wsgiref==0.1.2 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 7)) (0.1.2) |
| 12-Jul-2018 14:14:53 | Collecting xlrd==0.9.3 (from -r /home/clowder/requirements.txt (line 8)) |
| 12-Jul-2018 14:14:53 | Downloading https://files.pythonhosted.org/packages/b1/13/6fbcb55fef0b34c70cb3753741eaafc0e91553a1318653587a7d145caf15/xlrd-0.9.3.tar.gz (178kB) |
| 12-Jul-2018 14:14:53 | Installing collected packages: openpyxl, pika, pymongo, pytz, requests, xlrd |
| 12-Jul-2018 14:14:53 | Running setup.py install for openpyxl: started |
| 12-Jul-2018 14:14:53 | Running setup.py install for openpyxl: finished with status 'done' |
| 12-Jul-2018 14:14:53 | Found existing installation: pika 0.11.0 |
| 12-Jul-2018 14:14:53 | Uninstalling pika-0.11.0: |
| 12-Jul-2018 14:14:54 | Successfully uninstalled pika-0.11.0 |
| 12-Jul-2018 14:14:54 | Running setup.py install for pika: started |
| 12-Jul-2018 14:14:55 | Running setup.py install for pika: finished with status 'done' |
| 12-Jul-2018 14:14:55 | Running setup.py install for pymongo: started |
| 12-Jul-2018 14:14:55 | Running setup.py install for pymongo: finished with status 'done' |
| 12-Jul-2018 14:14:55 | Running setup.py install for pytz: started |
| 12-Jul-2018 14:14:56 | Running setup.py install for pytz: finished with status 'done' |
| 12-Jul-2018 14:14:56 | Found existing installation: requests 2.18.4 |
| 12-Jul-2018 14:14:56 | Uninstalling requests-2.18.4: |
| 12-Jul-2018 14:14:57 | Successfully uninstalled requests-2.18.4 |
| 12-Jul-2018 14:14:58 | Running setup.py install for xlrd: started |
| 12-Jul-2018 14:14:58 | Running setup.py install for xlrd: finished with status 'done' |
| 12-Jul-2018 14:14:58 | Successfully installed openpyxl-1.6.2 pika-0.9.14 pymongo-3.2.1 pytz-2014.3 requests-2.2.1 xlrd-0.9.3 |
| 12-Jul-2018 14:14:59 | Removing intermediate container de0c0175851b |
| 12-Jul-2018 14:14:59 | ---> 405413e755ed |
| 12-Jul-2018 14:14:59 | Step 8/11 : USER clowder |
| 12-Jul-2018 14:15:00 | ---> Running in 3d8193d8b89a |
| 12-Jul-2018 14:15:00 | Removing intermediate container 3d8193d8b89a |
| 12-Jul-2018 14:15:00 | ---> e53ddd82a952 |
| 12-Jul-2018 14:15:00 | Step 9/11 : COPY entrypoint.sh *.py *.json /home/clowder/ |
| 12-Jul-2018 14:15:01 | ---> 72b8b1f89e60 |
| 12-Jul-2018 14:15:01 | Step 10/11 : ENTRYPOINT ["/home/clowder/entrypoint.sh"] |
| 12-Jul-2018 14:15:02 | ---> Running in 19fddae1f2ac |
| 12-Jul-2018 14:15:03 | Removing intermediate container 19fddae1f2ac |
| 12-Jul-2018 14:15:03 | ---> fe119c3684a8 |
| 12-Jul-2018 14:15:03 | Step 11/11 : CMD ["extractor"] |
| 12-Jul-2018 14:15:03 | ---> Running in 6ec5bee289d7 |
| 12-Jul-2018 14:15:03 | Removing intermediate container 6ec5bee289d7 |
| 12-Jul-2018 14:15:03 | ---> 8fadfbf81071 |
| 12-Jul-2018 14:15:03 | Successfully built 8fadfbf81071 |
| 12-Jul-2018 14:15:04 | Successfully tagged 6184:latest |
| 12-Jul-2018 14:15:04 | The push refers to repository [docker.io/clowder/extractors-msc-monitor] |
| 12-Jul-2018 14:15:04 | dc989afa6c96: Preparing |
| 12-Jul-2018 14:15:04 | 8759b325e544: Preparing |
| 12-Jul-2018 14:15:04 | 46ac2faea553: Preparing |
| 12-Jul-2018 14:15:04 | 4664189bd5db: Preparing |
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| 12-Jul-2018 14:15:04 | c56153825175: Preparing |
| 12-Jul-2018 14:15:04 | ae620432889d: Preparing |
| 12-Jul-2018 14:15:04 | a2022691bf95: Preparing |
| 12-Jul-2018 14:15:04 | f2297bdfc824: Waiting |
| 12-Jul-2018 14:15:04 | 0fbe2bcb1bf9: Waiting |
| 12-Jul-2018 14:15:04 | 59669fcdd5eb: Waiting |
| 12-Jul-2018 14:15:04 | 7f7a065d245a: Waiting |
| 12-Jul-2018 14:15:04 | f96e6b25195f: Waiting |
| 12-Jul-2018 14:15:04 | c56153825175: Waiting |
| 12-Jul-2018 14:15:04 | ae620432889d: Waiting |
| 12-Jul-2018 14:15:04 | a2022691bf95: Waiting |
| 12-Jul-2018 14:15:04 | 0cdb02ac1d86: Layer already exists |
| 12-Jul-2018 14:15:05 | f2297bdfc824: Layer already exists |
| 12-Jul-2018 14:15:05 | 0fbe2bcb1bf9: Layer already exists |
| 12-Jul-2018 14:15:05 | 59669fcdd5eb: Layer already exists |
| 12-Jul-2018 14:15:05 | 7f7a065d245a: Layer already exists |
| 12-Jul-2018 14:15:05 | f96e6b25195f: Layer already exists |
| 12-Jul-2018 14:15:05 | dc989afa6c96: Pushed |
| 12-Jul-2018 14:15:06 | c56153825175: Layer already exists |
| 12-Jul-2018 14:15:06 | ae620432889d: Layer already exists |
| 12-Jul-2018 14:15:06 | a2022691bf95: Layer already exists |
| 12-Jul-2018 14:15:06 | 46ac2faea553: Pushed |
| 12-Jul-2018 14:15:06 | 4664189bd5db: Pushed |
| 12-Jul-2018 14:15:07 | 8759b325e544: Pushed |
| 12-Jul-2018 14:15:08 | browndog_v0.2.0: digest: sha256:0c8e0c3ae356f29d0c5e14c379e5a484f753a97f0053d38591a28ec0b47d3801 size: 3031 |
| 12-Jul-2018 14:15:09 | The push refers to repository [docker.io/clowder/extractors-msc-monitor] |
| 12-Jul-2018 14:15:09 | dc989afa6c96: Preparing |
| 12-Jul-2018 14:15:09 | 8759b325e544: Preparing |
| 12-Jul-2018 14:15:09 | 46ac2faea553: Preparing |
| 12-Jul-2018 14:15:09 | 4664189bd5db: Preparing |
| 12-Jul-2018 14:15:09 | 0cdb02ac1d86: Preparing |
| 12-Jul-2018 14:15:09 | f2297bdfc824: Preparing |
| 12-Jul-2018 14:15:09 | 0fbe2bcb1bf9: Preparing |
| 12-Jul-2018 14:15:09 | 59669fcdd5eb: Preparing |
| 12-Jul-2018 14:15:09 | 7f7a065d245a: Preparing |
| 12-Jul-2018 14:15:09 | f96e6b25195f: Preparing |
| 12-Jul-2018 14:15:09 | c56153825175: Preparing |
| 12-Jul-2018 14:15:09 | ae620432889d: Preparing |
| 12-Jul-2018 14:15:09 | a2022691bf95: Preparing |
| 12-Jul-2018 14:15:09 | 59669fcdd5eb: Waiting |
| 12-Jul-2018 14:15:09 | 7f7a065d245a: Waiting |
| 12-Jul-2018 14:15:09 | f96e6b25195f: Waiting |
| 12-Jul-2018 14:15:09 | a2022691bf95: Waiting |
| 12-Jul-2018 14:15:09 | c56153825175: Waiting |
| 12-Jul-2018 14:15:09 | ae620432889d: Waiting |
| 12-Jul-2018 14:15:09 | f2297bdfc824: Waiting |
| 12-Jul-2018 14:15:09 | 0fbe2bcb1bf9: Waiting |
| 12-Jul-2018 14:15:09 | 46ac2faea553: Layer already exists |
| 12-Jul-2018 14:15:09 | 4664189bd5db: Layer already exists |
| 12-Jul-2018 14:15:09 | 8759b325e544: Layer already exists |
| 12-Jul-2018 14:15:09 | dc989afa6c96: Layer already exists |
| 12-Jul-2018 14:15:09 | 0cdb02ac1d86: Layer already exists |
| 12-Jul-2018 14:15:09 | f2297bdfc824: Layer already exists |
| 12-Jul-2018 14:15:10 | 59669fcdd5eb: Layer already exists |
| 12-Jul-2018 14:15:10 | 0fbe2bcb1bf9: Layer already exists |
| 12-Jul-2018 14:15:10 | 7f7a065d245a: Layer already exists |
| 12-Jul-2018 14:15:10 | f96e6b25195f: Layer already exists |
| 12-Jul-2018 14:15:10 | ae620432889d: Layer already exists |
| 12-Jul-2018 14:15:10 | c56153825175: Layer already exists |
| 12-Jul-2018 14:15:10 | a2022691bf95: Layer already exists |
| 12-Jul-2018 14:15:10 | browndog_v0.3.0: digest: sha256:0c8e0c3ae356f29d0c5e14c379e5a484f753a97f0053d38591a28ec0b47d3801 size: 3031 |
| 12-Jul-2018 14:15:10 | The push refers to repository [docker.io/clowder/extractors-msc-monitor] |
| 12-Jul-2018 14:15:10 | dc989afa6c96: Preparing |
| 12-Jul-2018 14:15:10 | 8759b325e544: Preparing |
| 12-Jul-2018 14:15:10 | 46ac2faea553: Preparing |
| 12-Jul-2018 14:15:10 | 4664189bd5db: Preparing |
| 12-Jul-2018 14:15:10 | 0cdb02ac1d86: Preparing |
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| 12-Jul-2018 14:15:10 | 59669fcdd5eb: Preparing |
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| 12-Jul-2018 14:15:10 | c56153825175: Preparing |
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| 12-Jul-2018 14:15:10 | a2022691bf95: Preparing |
| 12-Jul-2018 14:15:10 | f2297bdfc824: Waiting |
| 12-Jul-2018 14:15:10 | 0fbe2bcb1bf9: Waiting |
| 12-Jul-2018 14:15:10 | 59669fcdd5eb: Waiting |
| 12-Jul-2018 14:15:10 | 7f7a065d245a: Waiting |
| 12-Jul-2018 14:15:10 | f96e6b25195f: Waiting |
| 12-Jul-2018 14:15:10 | c56153825175: Waiting |
| 12-Jul-2018 14:15:10 | ae620432889d: Waiting |
| 12-Jul-2018 14:15:10 | a2022691bf95: Waiting |
| 12-Jul-2018 14:15:11 | 0cdb02ac1d86: Layer already exists |
| 12-Jul-2018 14:15:11 | 8759b325e544: Layer already exists |
| 12-Jul-2018 14:15:11 | dc989afa6c96: Layer already exists |
| 12-Jul-2018 14:15:11 | 46ac2faea553: Layer already exists |
| 12-Jul-2018 14:15:11 | 4664189bd5db: Layer already exists |
| 12-Jul-2018 14:15:11 | f2297bdfc824: Layer already exists |
| 12-Jul-2018 14:15:11 | 59669fcdd5eb: Layer already exists |
| 12-Jul-2018 14:15:11 | 0fbe2bcb1bf9: Layer already exists |
| 12-Jul-2018 14:15:11 | 7f7a065d245a: Layer already exists |
| 12-Jul-2018 14:15:11 | f96e6b25195f: Layer already exists |
| 12-Jul-2018 14:15:11 | c56153825175: Layer already exists |
| 12-Jul-2018 14:15:11 | ae620432889d: Layer already exists |
| 12-Jul-2018 14:15:11 | a2022691bf95: Layer already exists |
| 12-Jul-2018 14:15:11 | latest: digest: sha256:0c8e0c3ae356f29d0c5e14c379e5a484f753a97f0053d38591a28ec0b47d3801 size: 3031 |
| 12-Jul-2018 14:15:12 | Untagged: 6184:latest |
| 12-Jul-2018 14:15:12 | Sending build context to Docker daemon 12.1MB |
| 12-Jul-2018 14:15:12 | |
| 12-Jul-2018 14:15:12 | Step 1/11 : FROM clowder/pyclowder:1 |
| 12-Jul-2018 14:15:12 | ---> d1a9e970ed30 |
| 12-Jul-2018 14:15:12 | Step 2/11 : MAINTAINER Yan Zhao <yanzhao3@illinois.edu> |
| 12-Jul-2018 14:15:12 | ---> Using cache |
| 12-Jul-2018 14:15:12 | ---> 1b1daf5ef823 |
| 12-Jul-2018 14:15:12 | Step 3/11 : ENV RABBITMQ_URI="" RABBITMQ_EXCHANGE="clowder" RABBITMQ_VHOST="%2F" RABBITMQ_QUEUE="ncsa.msc.PhenotypeExtractor" MONGO_URI="" DB_USERNAME="" DB_PASSWORD="" MAIN_SCRIPT="extractor-Phenotype.py" |
| 12-Jul-2018 14:15:12 | ---> Running in 67498b8594bf |
| 12-Jul-2018 14:15:12 | Removing intermediate container 67498b8594bf |
| 12-Jul-2018 14:15:12 | ---> 596229e8ce31 |
| 12-Jul-2018 14:15:12 | Step 4/11 : USER root |
| 12-Jul-2018 14:15:12 | ---> Running in 59507408e486 |
| 12-Jul-2018 14:15:13 | Removing intermediate container 59507408e486 |
| 12-Jul-2018 14:15:13 | ---> 6e3d4fa1824a |
| 12-Jul-2018 14:15:13 | Step 5/11 : COPY requirements.txt /home/clowder/ |
| 12-Jul-2018 14:15:13 | ---> 9fbb399afeba |
| 12-Jul-2018 14:15:13 | Step 6/11 : RUN pip install --upgrade pip |
| 12-Jul-2018 14:15:14 | ---> Running in 8c86e4a92adc |
| 12-Jul-2018 14:15:15 | Collecting pip |
| 12-Jul-2018 14:15:15 | Downloading https://files.pythonhosted.org/packages/0f/74/ecd13431bcc456ed390b44c8a6e917c1820365cbebcb6a8974d1cd045ab4/pip-10.0.1-py2.py3-none-any.whl (1.3MB) |
| 12-Jul-2018 14:15:15 | Installing collected packages: pip |
| 12-Jul-2018 14:15:15 | Found existing installation: pip 8.1.1 |
| 12-Jul-2018 14:15:15 | Not uninstalling pip at /usr/lib/python2.7/dist-packages, outside environment /usr |
| 12-Jul-2018 14:15:16 | Successfully installed pip-10.0.1 |
| 12-Jul-2018 14:15:17 | Removing intermediate container 8c86e4a92adc |
| 12-Jul-2018 14:15:17 | ---> d6094bc42ca9 |
| 12-Jul-2018 14:15:17 | Step 7/11 : RUN pip install -r /home/clowder/requirements.txt |
| 12-Jul-2018 14:15:18 | ---> Running in 9f4774db4789 |
| 12-Jul-2018 14:15:18 | Requirement already satisfied: argparse==1.2.1 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 1)) (1.2.1) |
| 12-Jul-2018 14:15:18 | Collecting openpyxl==1.6.2 (from -r /home/clowder/requirements.txt (line 2)) |
| 12-Jul-2018 14:15:19 | Downloading https://files.pythonhosted.org/packages/96/53/3782b6cc03500c0949a7ba9dba0c70da95d63d0ed4a04446123987ff983f/openpyxl-1.6.2.tar.gz (199kB) |
| 12-Jul-2018 14:15:19 | Collecting pika==0.9.14 (from -r /home/clowder/requirements.txt (line 3)) |
| 12-Jul-2018 14:15:19 | Downloading https://files.pythonhosted.org/packages/2b/5b/4c5b6eafc63e0985b926267579a1e2534af70df0a45932f0c23fcc5f1b88/pika-0.9.14.tar.gz (72kB) |
| 12-Jul-2018 14:15:19 | Collecting pymongo==3.2.1 (from -r /home/clowder/requirements.txt (line 4)) |
| 12-Jul-2018 14:15:20 | Downloading https://files.pythonhosted.org/packages/d7/94/9aa9ddd3e885caa307c0db8af5a1f5d266d3db44e1ae89bd4e14841ab8d0/pymongo-3.2.1.tar.gz (647kB) |
| 12-Jul-2018 14:15:20 | Collecting pytz==2014.3 (from -r /home/clowder/requirements.txt (line 5)) |
| 12-Jul-2018 14:15:20 | Downloading https://files.pythonhosted.org/packages/e2/8d/af599c0388f46775c6b039d8b9c4acda2f6ef86787312a35291fff4cb7ca/pytz-2014.3.tar.bz2 (158kB) |
| 12-Jul-2018 14:15:21 | Collecting requests==2.2.1 (from -r /home/clowder/requirements.txt (line 6)) |
| 12-Jul-2018 14:15:21 | Downloading https://files.pythonhosted.org/packages/7d/15/6efffc6aee666e1456852c2bf1d483b46bf971a2d509b35a98fc3eae1c60/requests-2.2.1-py2.py3-none-any.whl (625kB) |
| 12-Jul-2018 14:15:21 | Requirement already satisfied: wsgiref==0.1.2 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 7)) (0.1.2) |
| 12-Jul-2018 14:15:21 | Collecting xlrd==0.9.3 (from -r /home/clowder/requirements.txt (line 8)) |
| 12-Jul-2018 14:15:21 | Downloading https://files.pythonhosted.org/packages/b1/13/6fbcb55fef0b34c70cb3753741eaafc0e91553a1318653587a7d145caf15/xlrd-0.9.3.tar.gz (178kB) |
| 12-Jul-2018 14:15:21 | Installing collected packages: openpyxl, pika, pymongo, pytz, requests, xlrd |
| 12-Jul-2018 14:15:21 | Running setup.py install for openpyxl: started |
| 12-Jul-2018 14:15:22 | Running setup.py install for openpyxl: finished with status 'done' |
| 12-Jul-2018 14:15:22 | Found existing installation: pika 0.11.0 |
| 12-Jul-2018 14:15:22 | Uninstalling pika-0.11.0: |
| 12-Jul-2018 14:15:23 | Successfully uninstalled pika-0.11.0 |
| 12-Jul-2018 14:15:23 | Running setup.py install for pika: started |
| 12-Jul-2018 14:15:23 | Running setup.py install for pika: finished with status 'done' |
| 12-Jul-2018 14:15:23 | Running setup.py install for pymongo: started |
| 12-Jul-2018 14:15:24 | Running setup.py install for pymongo: finished with status 'done' |
| 12-Jul-2018 14:15:24 | Running setup.py install for pytz: started |
| 12-Jul-2018 14:15:24 | Running setup.py install for pytz: finished with status 'done' |
| 12-Jul-2018 14:15:24 | Found existing installation: requests 2.18.4 |
| 12-Jul-2018 14:15:24 | Uninstalling requests-2.18.4: |
| 12-Jul-2018 14:15:25 | Successfully uninstalled requests-2.18.4 |
| 12-Jul-2018 14:15:26 | Running setup.py install for xlrd: started |
| 12-Jul-2018 14:15:26 | Running setup.py install for xlrd: finished with status 'done' |
| 12-Jul-2018 14:15:26 | Successfully installed openpyxl-1.6.2 pika-0.9.14 pymongo-3.2.1 pytz-2014.3 requests-2.2.1 xlrd-0.9.3 |
| 12-Jul-2018 14:15:27 | Removing intermediate container 9f4774db4789 |
| 12-Jul-2018 14:15:27 | ---> d72b3ce14cec |
| 12-Jul-2018 14:15:27 | Step 8/11 : USER clowder |
| 12-Jul-2018 14:15:27 | ---> Running in 62b2adb3c193 |
| 12-Jul-2018 14:15:28 | Removing intermediate container 62b2adb3c193 |
| 12-Jul-2018 14:15:28 | ---> c8b810798f6c |
| 12-Jul-2018 14:15:28 | Step 9/11 : COPY entrypoint.sh *.py *.json /home/clowder/ |
| 12-Jul-2018 14:15:29 | ---> b56bde19362f |
| 12-Jul-2018 14:15:29 | Step 10/11 : ENTRYPOINT ["/home/clowder/entrypoint.sh"] |
| 12-Jul-2018 14:15:29 | ---> Running in 0d961c176e7a |
| 12-Jul-2018 14:15:29 | Removing intermediate container 0d961c176e7a |
| 12-Jul-2018 14:15:29 | ---> 404e714daee0 |
| 12-Jul-2018 14:15:29 | Step 11/11 : CMD ["extractor"] |
| 12-Jul-2018 14:15:29 | ---> Running in 128c88f40d0c |
| 12-Jul-2018 14:15:30 | Removing intermediate container 128c88f40d0c |
| 12-Jul-2018 14:15:30 | ---> d55963b2f3a0 |
| 12-Jul-2018 14:15:30 | Successfully built d55963b2f3a0 |
| 12-Jul-2018 14:15:30 | Successfully tagged 6184:latest |
| 12-Jul-2018 14:15:30 | The push refers to repository [docker.io/clowder/extractors-msc-phenotype] |
| 12-Jul-2018 14:15:30 | 36f7674bd726: Preparing |
| 12-Jul-2018 14:15:30 | cb673411fe62: Preparing |
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| 12-Jul-2018 14:15:36 | 0cdb02ac1d86: Layer already exists |
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| 12-Jul-2018 14:15:37 | f96e6b25195f: Layer already exists |
| 12-Jul-2018 14:15:37 | 36f7674bd726: Pushed |
| 12-Jul-2018 14:15:37 | c56153825175: Layer already exists |
| 12-Jul-2018 14:15:37 | a2022691bf95: Layer already exists |
| 12-Jul-2018 14:15:37 | ae620432889d: Layer already exists |
| 12-Jul-2018 14:15:37 | 414d65f7ecb8: Pushed |
| 12-Jul-2018 14:15:38 | 34bfb2693129: Pushed |
| 12-Jul-2018 14:15:39 | cb673411fe62: Pushed |
| 12-Jul-2018 14:15:44 | browndog_v0.2.0: digest: sha256:056447037fdd7f13a01a8d33dae60f6034f56c7f288dab53fb211e7bef379510 size: 3031 |
| 12-Jul-2018 14:15:44 | The push refers to repository [docker.io/clowder/extractors-msc-phenotype] |
| 12-Jul-2018 14:15:44 | 36f7674bd726: Preparing |
| 12-Jul-2018 14:15:44 | cb673411fe62: Preparing |
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| 12-Jul-2018 14:15:45 | 0cdb02ac1d86: Layer already exists |
| 12-Jul-2018 14:15:45 | cb673411fe62: Layer already exists |
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| 12-Jul-2018 14:15:45 | 414d65f7ecb8: Layer already exists |
| 12-Jul-2018 14:15:45 | 36f7674bd726: Layer already exists |
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| 12-Jul-2018 14:15:45 | c56153825175: Layer already exists |
| 12-Jul-2018 14:15:45 | ae620432889d: Layer already exists |
| 12-Jul-2018 14:15:45 | a2022691bf95: Layer already exists |
| 12-Jul-2018 14:15:46 | browndog_v0.3.0: digest: sha256:056447037fdd7f13a01a8d33dae60f6034f56c7f288dab53fb211e7bef379510 size: 3031 |
| 12-Jul-2018 14:15:47 | The push refers to repository [docker.io/clowder/extractors-msc-phenotype] |
| 12-Jul-2018 14:15:47 | 36f7674bd726: Preparing |
| 12-Jul-2018 14:15:47 | cb673411fe62: Preparing |
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| 12-Jul-2018 14:15:47 | 414d65f7ecb8: Layer already exists |
| 12-Jul-2018 14:15:47 | 34bfb2693129: Layer already exists |
| 12-Jul-2018 14:15:47 | cb673411fe62: Layer already exists |
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| 12-Jul-2018 14:15:47 | 0fbe2bcb1bf9: Layer already exists |
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| 12-Jul-2018 14:15:47 | 59669fcdd5eb: Layer already exists |
| 12-Jul-2018 14:15:47 | f96e6b25195f: Layer already exists |
| 12-Jul-2018 14:15:47 | c56153825175: Layer already exists |
| 12-Jul-2018 14:15:47 | a2022691bf95: Layer already exists |
| 12-Jul-2018 14:15:47 | ae620432889d: Layer already exists |
| 12-Jul-2018 14:15:48 | latest: digest: sha256:056447037fdd7f13a01a8d33dae60f6034f56c7f288dab53fb211e7bef379510 size: 3031 |
| 12-Jul-2018 14:15:48 | Untagged: 6184:latest |
| 12-Jul-2018 14:15:48 | Finished task 'docker build' with result: Success |
| 12-Jul-2018 14:15:48 | Running post build plugin 'Docker Container Cleanup' |
| 12-Jul-2018 14:15:48 | Running post build plugin 'NCover Results Collector' |
| 12-Jul-2018 14:15:48 | Running post build plugin 'Clover Results Collector' |
| 12-Jul-2018 14:15:48 | Running post build plugin 'npm Cache Cleanup' |
| 12-Jul-2018 14:15:48 | Running post build plugin 'Artifact Copier' |
| 12-Jul-2018 14:15:48 | Finalising the build... |
| 12-Jul-2018 14:15:48 | Stopping timer. |
| 12-Jul-2018 14:15:48 | Build CATS-MSC-JOB1-38 completed. |
| 12-Jul-2018 14:15:48 | Running on server: post build plugin 'NCover Results Collector' |
| 12-Jul-2018 14:15:48 | Running on server: post build plugin 'Build Hanging Detection Configuration' |
| 12-Jul-2018 14:15:48 | Running on server: post build plugin 'Clover Delta Calculator' |
| 12-Jul-2018 14:15:48 | Running on server: post build plugin 'Maven Dependencies Postprocessor' |
| 12-Jul-2018 14:15:48 | All post build plugins have finished |
| 12-Jul-2018 14:15:48 | Generating build results summary... |
| 12-Jul-2018 14:15:48 | Saving build results to disk... |
| 12-Jul-2018 14:15:48 | Logging substituted variables... |
| 12-Jul-2018 14:15:48 | Indexing build results... |
| 12-Jul-2018 14:15:48 | Finished building CATS-MSC-JOB1-38. |