Build: #42 was successful
Job: Default Job was successful
Build log
The build generated 1,106 lines of output. The output is too long and has been truncated to the last 1,000 lines. Download or view full build log.
| 14-Oct-2019 14:26:16 | libxext6 libxmu6 libxt6 wget x11-common |
| 14-Oct-2019 14:26:16 | 0 upgraded, 13 newly installed, 0 to remove and 59 not upgraded. |
| 14-Oct-2019 14:26:16 | Need to get 1402 kB of archives. |
| 14-Oct-2019 14:26:16 | After this operation, 5597 kB of additional disk space will be used. |
| 14-Oct-2019 14:26:16 | Get:1 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxau6 amd64 1:1.0.8-1 [8376 B] |
| 14-Oct-2019 14:26:16 | Get:2 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxdmcp6 amd64 1:1.1.2-1.1 [11.0 kB] |
| 14-Oct-2019 14:26:17 | Get:3 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcb1 amd64 1.11.1-1ubuntu1 [40.0 kB] |
| 14-Oct-2019 14:26:17 | Get:4 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libx11-data all 2:1.6.3-1ubuntu2.1 [113 kB] |
| 14-Oct-2019 14:26:17 | Get:5 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libx11-6 amd64 2:1.6.3-1ubuntu2.1 [570 kB] |
| 14-Oct-2019 14:26:18 | Get:6 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxext6 amd64 2:1.3.3-1 [29.4 kB] |
| 14-Oct-2019 14:26:18 | Get:7 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 x11-common all 1:7.7+13ubuntu3.1 [22.9 kB] |
| 14-Oct-2019 14:26:19 | Get:8 http://archive.ubuntu.com/ubuntu xenial/main amd64 libice6 amd64 2:1.0.9-1 [39.2 kB] |
| 14-Oct-2019 14:26:19 | Get:9 http://archive.ubuntu.com/ubuntu xenial/main amd64 libsm6 amd64 2:1.2.2-1 [15.8 kB] |
| 14-Oct-2019 14:26:19 | Get:10 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libidn11 amd64 1.32-3ubuntu1.2 [46.5 kB] |
| 14-Oct-2019 14:26:20 | Get:11 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 wget amd64 1.17.1-1ubuntu1.5 [299 kB] |
| 14-Oct-2019 14:26:20 | Get:12 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxt6 amd64 1:1.1.5-0ubuntu1 [160 kB] |
| 14-Oct-2019 14:26:21 | Get:13 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxmu6 amd64 2:1.1.2-2 [46.0 kB] |
| 14-Oct-2019 14:26:22 | debconf: delaying package configuration, since apt-utils is not installed |
| 14-Oct-2019 14:26:22 | Fetched 1402 kB in 5s (258 kB/s) |
| 14-Oct-2019 14:26:23 | Selecting previously unselected package libxau6:amd64. |
| 14-Oct-2019 14:26:23 | (Reading database ... |
| 14-Oct-2019 14:26:23 | (Reading database ... 5% |
| 14-Oct-2019 14:26:23 | (Reading database ... 10% |
| 14-Oct-2019 14:26:23 | (Reading database ... 15% |
| 14-Oct-2019 14:26:23 | (Reading database ... 20% |
| 14-Oct-2019 14:26:23 | (Reading database ... 25% |
| 14-Oct-2019 14:26:23 | (Reading database ... 30% |
| 14-Oct-2019 14:26:23 | (Reading database ... 35% |
| 14-Oct-2019 14:26:23 | (Reading database ... 40% |
| 14-Oct-2019 14:26:23 | (Reading database ... 45% |
| 14-Oct-2019 14:26:23 | (Reading database ... 50% |
| 14-Oct-2019 14:26:23 | (Reading database ... 55% |
| 14-Oct-2019 14:26:23 | (Reading database ... 60% |
| 14-Oct-2019 14:26:23 | (Reading database ... 65% |
| 14-Oct-2019 14:26:23 | (Reading database ... 70% |
| 14-Oct-2019 14:26:23 | (Reading database ... 75% |
| 14-Oct-2019 14:26:23 | (Reading database ... 80% |
| 14-Oct-2019 14:26:23 | (Reading database ... 85% |
| 14-Oct-2019 14:26:23 | (Reading database ... 90% |
| 14-Oct-2019 14:26:23 | (Reading database ... 95% |
| 14-Oct-2019 14:26:23 | (Reading database ... 100% |
| 14-Oct-2019 14:26:23 | (Reading database ... 6101 files and directories currently installed.) |
| 14-Oct-2019 14:26:23 | Preparing to unpack .../libxau6_1%3a1.0.8-1_amd64.deb ... |
| 14-Oct-2019 14:26:23 | Unpacking libxau6:amd64 (1:1.0.8-1) ... |
| 14-Oct-2019 14:26:24 | Selecting previously unselected package libxdmcp6:amd64. |
| 14-Oct-2019 14:26:24 | Preparing to unpack .../libxdmcp6_1%3a1.1.2-1.1_amd64.deb ... |
| 14-Oct-2019 14:26:25 | Unpacking libxdmcp6:amd64 (1:1.1.2-1.1) ... |
| 14-Oct-2019 14:26:26 | Selecting previously unselected package libxcb1:amd64. |
| 14-Oct-2019 14:26:26 | Preparing to unpack .../libxcb1_1.11.1-1ubuntu1_amd64.deb ... |
| 14-Oct-2019 14:26:26 | Unpacking libxcb1:amd64 (1.11.1-1ubuntu1) ... |
| 14-Oct-2019 14:26:28 | Selecting previously unselected package libx11-data. |
| 14-Oct-2019 14:26:28 | Preparing to unpack .../libx11-data_2%3a1.6.3-1ubuntu2.1_all.deb ... |
| 14-Oct-2019 14:26:28 | Unpacking libx11-data (2:1.6.3-1ubuntu2.1) ... |
| 14-Oct-2019 14:26:30 | Selecting previously unselected package libx11-6:amd64. |
| 14-Oct-2019 14:26:30 | Preparing to unpack .../libx11-6_2%3a1.6.3-1ubuntu2.1_amd64.deb ... |
| 14-Oct-2019 14:26:30 | Unpacking libx11-6:amd64 (2:1.6.3-1ubuntu2.1) ... |
| 14-Oct-2019 14:26:32 | Selecting previously unselected package libxext6:amd64. |
| 14-Oct-2019 14:26:32 | Preparing to unpack .../libxext6_2%3a1.3.3-1_amd64.deb ... |
| 14-Oct-2019 14:26:32 | Unpacking libxext6:amd64 (2:1.3.3-1) ... |
| 14-Oct-2019 14:26:33 | Selecting previously unselected package x11-common. |
| 14-Oct-2019 14:26:33 | Preparing to unpack .../x11-common_1%3a7.7+13ubuntu3.1_all.deb ... |
| 14-Oct-2019 14:26:33 | dpkg-query: no packages found matching nux-tools |
| 14-Oct-2019 14:26:33 | Unpacking x11-common (1:7.7+13ubuntu3.1) ... |
| 14-Oct-2019 14:26:34 | Selecting previously unselected package libice6:amd64. |
| 14-Oct-2019 14:26:34 | Preparing to unpack .../libice6_2%3a1.0.9-1_amd64.deb ... |
| 14-Oct-2019 14:26:35 | Unpacking libice6:amd64 (2:1.0.9-1) ... |
| 14-Oct-2019 14:26:35 | Selecting previously unselected package libsm6:amd64. |
| 14-Oct-2019 14:26:35 | Preparing to unpack .../libsm6_2%3a1.2.2-1_amd64.deb ... |
| 14-Oct-2019 14:26:36 | Unpacking libsm6:amd64 (2:1.2.2-1) ... |
| 14-Oct-2019 14:26:37 | Selecting previously unselected package libidn11:amd64. |
| 14-Oct-2019 14:26:37 | Preparing to unpack .../libidn11_1.32-3ubuntu1.2_amd64.deb ... |
| 14-Oct-2019 14:26:37 | Unpacking libidn11:amd64 (1.32-3ubuntu1.2) ... |
| 14-Oct-2019 14:26:38 | Selecting previously unselected package wget. |
| 14-Oct-2019 14:26:38 | Preparing to unpack .../wget_1.17.1-1ubuntu1.5_amd64.deb ... |
| 14-Oct-2019 14:26:38 | Unpacking wget (1.17.1-1ubuntu1.5) ... |
| 14-Oct-2019 14:26:39 | Selecting previously unselected package libxt6:amd64. |
| 14-Oct-2019 14:26:39 | Preparing to unpack .../libxt6_1%3a1.1.5-0ubuntu1_amd64.deb ... |
| 14-Oct-2019 14:26:39 | Unpacking libxt6:amd64 (1:1.1.5-0ubuntu1) ... |
| 14-Oct-2019 14:26:40 | Selecting previously unselected package libxmu6:amd64. |
| 14-Oct-2019 14:26:40 | Preparing to unpack .../libxmu6_2%3a1.1.2-2_amd64.deb ... |
| 14-Oct-2019 14:26:40 | Unpacking libxmu6:amd64 (2:1.1.2-2) ... |
| 14-Oct-2019 14:26:40 | Processing triggers for libc-bin (2.23-0ubuntu9) ... |
| 14-Oct-2019 14:26:40 | Processing triggers for systemd (229-4ubuntu19) ... |
| 14-Oct-2019 14:26:41 | Setting up libxau6:amd64 (1:1.0.8-1) ... |
| 14-Oct-2019 14:26:42 | Setting up libxdmcp6:amd64 (1:1.1.2-1.1) ... |
| 14-Oct-2019 14:26:42 | Setting up libxcb1:amd64 (1.11.1-1ubuntu1) ... |
| 14-Oct-2019 14:26:43 | Setting up libx11-data (2:1.6.3-1ubuntu2.1) ... |
| 14-Oct-2019 14:26:43 | Setting up libx11-6:amd64 (2:1.6.3-1ubuntu2.1) ... |
| 14-Oct-2019 14:26:43 | Setting up libxext6:amd64 (2:1.3.3-1) ... |
| 14-Oct-2019 14:26:43 | Setting up x11-common (1:7.7+13ubuntu3.1) ... |
| 14-Oct-2019 14:26:46 | debconf: unable to initialize frontend: Dialog |
| 14-Oct-2019 14:26:46 | debconf: (TERM is not set, so the dialog frontend is not usable.) |
| 14-Oct-2019 14:26:46 | debconf: falling back to frontend: Readline |
| 14-Oct-2019 14:26:46 | debconf: unable to initialize frontend: Readline |
| 14-Oct-2019 14:26:46 | debconf: (Can't locate Term/ReadLine.pm in @INC (you may need to install the Term::ReadLine module) (@INC contains: /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.22.1 /usr/local/share/perl/5.22.1 /usr/lib/x86_64-linux-gnu/perl5/5.22 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl/5.22 /usr/share/perl/5.22 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base .) at /usr/share/perl5/Debconf/FrontEnd/Readline.pm line 7.) |
| 14-Oct-2019 14:26:46 | debconf: falling back to frontend: Teletype |
| 14-Oct-2019 14:26:46 | update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults |
| 14-Oct-2019 14:26:46 | invoke-rc.d: could not determine current runlevel |
| 14-Oct-2019 14:26:46 | invoke-rc.d: policy-rc.d denied execution of start. |
| 14-Oct-2019 14:26:46 | Setting up libice6:amd64 (2:1.0.9-1) ... |
| 14-Oct-2019 14:26:47 | Setting up libsm6:amd64 (2:1.2.2-1) ... |
| 14-Oct-2019 14:26:47 | Setting up libidn11:amd64 (1.32-3ubuntu1.2) ... |
| 14-Oct-2019 14:26:48 | Setting up wget (1.17.1-1ubuntu1.5) ... |
| 14-Oct-2019 14:26:48 | Setting up libxt6:amd64 (1:1.1.5-0ubuntu1) ... |
| 14-Oct-2019 14:26:48 | Setting up libxmu6:amd64 (2:1.1.2-2) ... |
| 14-Oct-2019 14:26:49 | Processing triggers for libc-bin (2.23-0ubuntu9) ... |
| 14-Oct-2019 14:26:49 | Processing triggers for systemd (229-4ubuntu19) ... |
| 14-Oct-2019 14:26:52 | Removing intermediate container f13d78f48eea |
| 14-Oct-2019 14:26:52 | ---> a4fd5861f766 |
| 14-Oct-2019 14:26:52 | Step 8/11 : USER clowder |
| 14-Oct-2019 14:26:52 | ---> Running in f0b937bf40ef |
| 14-Oct-2019 14:26:53 | Removing intermediate container f0b937bf40ef |
| 14-Oct-2019 14:26:53 | ---> 62fe5814c869 |
| 14-Oct-2019 14:26:53 | Step 9/11 : COPY entrypoint.sh *.py *.m data/*.mat *.json /home/clowder/ |
| 14-Oct-2019 14:26:55 | ---> 7938d4b4d0db |
| 14-Oct-2019 14:26:55 | Step 10/11 : ENTRYPOINT ["/home/clowder/entrypoint.sh"] |
| 14-Oct-2019 14:26:55 | ---> Running in 46e8f9e0d4f2 |
| 14-Oct-2019 14:26:56 | Removing intermediate container 46e8f9e0d4f2 |
| 14-Oct-2019 14:26:56 | ---> bb52b6ba75a3 |
| 14-Oct-2019 14:26:56 | Step 11/11 : CMD ["extractor"] |
| 14-Oct-2019 14:26:56 | ---> Running in 7ddf11a7250f |
| 14-Oct-2019 14:26:57 | Removing intermediate container 7ddf11a7250f |
| 14-Oct-2019 14:26:57 | ---> fd7a6ff85817 |
| 14-Oct-2019 14:26:57 | Successfully built fd7a6ff85817 |
| 14-Oct-2019 14:26:57 | Successfully tagged 6425:latest |
| 14-Oct-2019 14:26:57 | The push refers to repository [docker.io/clowder/extractors-msc-kidney] |
| 14-Oct-2019 14:26:57 | 5b13ab2c4873: Preparing |
| 14-Oct-2019 14:26:57 | b9f76c736e84: Preparing |
| 14-Oct-2019 14:26:57 | 818491c962c9: Preparing |
| 14-Oct-2019 14:26:57 | 0cdb02ac1d86: Preparing |
| 14-Oct-2019 14:26:57 | f2297bdfc824: Preparing |
| 14-Oct-2019 14:26:57 | 0fbe2bcb1bf9: Preparing |
| 14-Oct-2019 14:26:57 | 59669fcdd5eb: Preparing |
| 14-Oct-2019 14:26:57 | 7f7a065d245a: Preparing |
| 14-Oct-2019 14:26:57 | f96e6b25195f: Preparing |
| 14-Oct-2019 14:26:57 | 0fbe2bcb1bf9: Waiting |
| 14-Oct-2019 14:26:57 | 59669fcdd5eb: Waiting |
| 14-Oct-2019 14:26:57 | 7f7a065d245a: Waiting |
| 14-Oct-2019 14:26:57 | c56153825175: Preparing |
| 14-Oct-2019 14:26:57 | ae620432889d: Preparing |
| 14-Oct-2019 14:26:57 | a2022691bf95: Preparing |
| 14-Oct-2019 14:26:57 | f96e6b25195f: Waiting |
| 14-Oct-2019 14:26:57 | c56153825175: Waiting |
| 14-Oct-2019 14:26:57 | ae620432889d: Waiting |
| 14-Oct-2019 14:26:57 | a2022691bf95: Waiting |
| 14-Oct-2019 14:26:58 | f2297bdfc824: Layer already exists |
| 14-Oct-2019 14:26:58 | 0cdb02ac1d86: Layer already exists |
| 14-Oct-2019 14:26:58 | 59669fcdd5eb: Layer already exists |
| 14-Oct-2019 14:26:58 | 0fbe2bcb1bf9: Layer already exists |
| 14-Oct-2019 14:26:58 | 7f7a065d245a: Layer already exists |
| 14-Oct-2019 14:26:58 | f96e6b25195f: Layer already exists |
| 14-Oct-2019 14:26:58 | c56153825175: Layer already exists |
| 14-Oct-2019 14:26:58 | ae620432889d: Layer already exists |
| 14-Oct-2019 14:26:58 | a2022691bf95: Layer already exists |
| 14-Oct-2019 14:26:59 | 5b13ab2c4873: Pushed |
| 14-Oct-2019 14:27:00 | b9f76c736e84: Pushed |
| 14-Oct-2019 14:27:00 | 818491c962c9: Pushed |
| 14-Oct-2019 14:27:04 | browndog_v0.2.0: digest: sha256:68e09ca2852f3adf92f671e2466f98ead039bfca1ad62a9ff061633a4fbd0ad7 size: 2826 |
| 14-Oct-2019 14:27:04 | The push refers to repository [docker.io/clowder/extractors-msc-kidney] |
| 14-Oct-2019 14:27:04 | 5b13ab2c4873: Preparing |
| 14-Oct-2019 14:27:04 | b9f76c736e84: Preparing |
| 14-Oct-2019 14:27:04 | 818491c962c9: Preparing |
| 14-Oct-2019 14:27:04 | 0cdb02ac1d86: Preparing |
| 14-Oct-2019 14:27:04 | f2297bdfc824: Preparing |
| 14-Oct-2019 14:27:04 | 0fbe2bcb1bf9: Preparing |
| 14-Oct-2019 14:27:04 | 59669fcdd5eb: Preparing |
| 14-Oct-2019 14:27:04 | 7f7a065d245a: Preparing |
| 14-Oct-2019 14:27:04 | f96e6b25195f: Preparing |
| 14-Oct-2019 14:27:04 | c56153825175: Preparing |
| 14-Oct-2019 14:27:04 | ae620432889d: Preparing |
| 14-Oct-2019 14:27:04 | a2022691bf95: Preparing |
| 14-Oct-2019 14:27:04 | f96e6b25195f: Waiting |
| 14-Oct-2019 14:27:04 | c56153825175: Waiting |
| 14-Oct-2019 14:27:04 | ae620432889d: Waiting |
| 14-Oct-2019 14:27:04 | a2022691bf95: Waiting |
| 14-Oct-2019 14:27:04 | 0fbe2bcb1bf9: Waiting |
| 14-Oct-2019 14:27:04 | 59669fcdd5eb: Waiting |
| 14-Oct-2019 14:27:04 | 7f7a065d245a: Waiting |
| 14-Oct-2019 14:27:04 | 0cdb02ac1d86: Layer already exists |
| 14-Oct-2019 14:27:04 | b9f76c736e84: Layer already exists |
| 14-Oct-2019 14:27:04 | 818491c962c9: Layer already exists |
| 14-Oct-2019 14:27:04 | 5b13ab2c4873: Layer already exists |
| 14-Oct-2019 14:27:05 | f96e6b25195f: Layer already exists |
| 14-Oct-2019 14:27:05 | 0fbe2bcb1bf9: Layer already exists |
| 14-Oct-2019 14:27:05 | 7f7a065d245a: Layer already exists |
| 14-Oct-2019 14:27:05 | 59669fcdd5eb: Layer already exists |
| 14-Oct-2019 14:27:05 | c56153825175: Layer already exists |
| 14-Oct-2019 14:27:05 | ae620432889d: Layer already exists |
| 14-Oct-2019 14:27:05 | f2297bdfc824: Layer already exists |
| 14-Oct-2019 14:27:05 | a2022691bf95: Layer already exists |
| 14-Oct-2019 14:27:06 | browndog_v0.3.0: digest: sha256:68e09ca2852f3adf92f671e2466f98ead039bfca1ad62a9ff061633a4fbd0ad7 size: 2826 |
| 14-Oct-2019 14:27:06 | The push refers to repository [docker.io/clowder/extractors-msc-kidney] |
| 14-Oct-2019 14:27:06 | 5b13ab2c4873: Preparing |
| 14-Oct-2019 14:27:06 | b9f76c736e84: Preparing |
| 14-Oct-2019 14:27:06 | 818491c962c9: Preparing |
| 14-Oct-2019 14:27:06 | 0cdb02ac1d86: Preparing |
| 14-Oct-2019 14:27:06 | f2297bdfc824: Preparing |
| 14-Oct-2019 14:27:06 | 0fbe2bcb1bf9: Preparing |
| 14-Oct-2019 14:27:06 | 59669fcdd5eb: Preparing |
| 14-Oct-2019 14:27:06 | 0fbe2bcb1bf9: Waiting |
| 14-Oct-2019 14:27:06 | 7f7a065d245a: Preparing |
| 14-Oct-2019 14:27:06 | f96e6b25195f: Preparing |
| 14-Oct-2019 14:27:06 | c56153825175: Preparing |
| 14-Oct-2019 14:27:06 | ae620432889d: Preparing |
| 14-Oct-2019 14:27:06 | a2022691bf95: Preparing |
| 14-Oct-2019 14:27:06 | 59669fcdd5eb: Waiting |
| 14-Oct-2019 14:27:06 | 7f7a065d245a: Waiting |
| 14-Oct-2019 14:27:06 | f96e6b25195f: Waiting |
| 14-Oct-2019 14:27:06 | c56153825175: Waiting |
| 14-Oct-2019 14:27:06 | ae620432889d: Waiting |
| 14-Oct-2019 14:27:06 | a2022691bf95: Waiting |
| 14-Oct-2019 14:27:06 | b9f76c736e84: Layer already exists |
| 14-Oct-2019 14:27:06 | 818491c962c9: Layer already exists |
| 14-Oct-2019 14:27:06 | f2297bdfc824: Layer already exists |
| 14-Oct-2019 14:27:06 | 0cdb02ac1d86: Layer already exists |
| 14-Oct-2019 14:27:07 | 5b13ab2c4873: Layer already exists |
| 14-Oct-2019 14:27:07 | 59669fcdd5eb: Layer already exists |
| 14-Oct-2019 14:27:07 | 0fbe2bcb1bf9: Layer already exists |
| 14-Oct-2019 14:27:07 | 7f7a065d245a: Layer already exists |
| 14-Oct-2019 14:27:07 | f96e6b25195f: Layer already exists |
| 14-Oct-2019 14:27:07 | c56153825175: Layer already exists |
| 14-Oct-2019 14:27:07 | ae620432889d: Layer already exists |
| 14-Oct-2019 14:27:07 | a2022691bf95: Layer already exists |
| 14-Oct-2019 14:27:07 | latest: digest: sha256:68e09ca2852f3adf92f671e2466f98ead039bfca1ad62a9ff061633a4fbd0ad7 size: 2826 |
| 14-Oct-2019 14:27:07 | Untagged: 6425:latest |
| 14-Oct-2019 14:27:08 | Sending build context to Docker daemon 67.07kB |
| 14-Oct-2019 14:27:08 | |
| 14-Oct-2019 14:27:08 | Step 1/11 : FROM clowder/pyclowder:1 |
| 14-Oct-2019 14:27:08 | ---> d1a9e970ed30 |
| 14-Oct-2019 14:27:08 | Step 2/11 : MAINTAINER Yan Zhao <yanzhao3@illinois.edu> |
| 14-Oct-2019 14:27:08 | ---> Running in 8803020707f0 |
| 14-Oct-2019 14:27:08 | Removing intermediate container 8803020707f0 |
| 14-Oct-2019 14:27:08 | ---> 44d958d7f080 |
| 14-Oct-2019 14:27:08 | Step 3/11 : ENV RABBITMQ_URI="" RABBITMQ_EXCHANGE="clowder" RABBITMQ_VHOST="%2F" RABBITMQ_QUEUE="ncsa.msc.IsletExtractor" MONGO_URI="" DB_USERNAME="" DB_PASSWORD="" MAIN_SCRIPT="extractor-Islet.py" |
| 14-Oct-2019 14:27:09 | ---> Running in 8c111e4cfc90 |
| 14-Oct-2019 14:27:10 | Removing intermediate container 8c111e4cfc90 |
| 14-Oct-2019 14:27:10 | ---> a2933c47ad20 |
| 14-Oct-2019 14:27:10 | Step 4/11 : USER root |
| 14-Oct-2019 14:27:10 | ---> Running in 48aee9f371bd |
| 14-Oct-2019 14:27:11 | Removing intermediate container 48aee9f371bd |
| 14-Oct-2019 14:27:11 | ---> 6c536dcf1fca |
| 14-Oct-2019 14:27:11 | Step 5/11 : COPY requirements.txt /home/clowder/ |
| 14-Oct-2019 14:27:12 | ---> e6075ef29cac |
| 14-Oct-2019 14:27:12 | Step 6/11 : RUN pip install --upgrade pip |
| 14-Oct-2019 14:27:12 | ---> Running in 0e55ff0adaa1 |
| 14-Oct-2019 14:27:15 | Collecting pip |
| 14-Oct-2019 14:27:15 | Downloading https://files.pythonhosted.org/packages/4a/08/6ca123073af4ebc4c5488a5bc8a010ac57aa39ce4d3c8a931ad504de4185/pip-19.3-py2.py3-none-any.whl (1.4MB) |
| 14-Oct-2019 14:27:15 | Installing collected packages: pip |
| 14-Oct-2019 14:27:15 | Found existing installation: pip 8.1.1 |
| 14-Oct-2019 14:27:15 | Not uninstalling pip at /usr/lib/python2.7/dist-packages, outside environment /usr |
| 14-Oct-2019 14:27:16 | Successfully installed pip-19.3 |
| 14-Oct-2019 14:27:18 | Removing intermediate container 0e55ff0adaa1 |
| 14-Oct-2019 14:27:18 | ---> e941fb9f1fbe |
| 14-Oct-2019 14:27:18 | Step 7/11 : RUN pip install -r /home/clowder/requirements.txt |
| 14-Oct-2019 14:27:18 | ---> Running in 0e9a90416ce2 |
| 14-Oct-2019 14:27:20 | DEPRECATION: Python 2.7 will reach the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 won't be maintained after that date. A future version of pip will drop support for Python 2.7. More details about Python 2 support in pip, can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support |
| 14-Oct-2019 14:27:20 | Requirement already satisfied: argparse==1.2.1 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 1)) (1.2.1) |
| 14-Oct-2019 14:27:20 | Collecting openpyxl==1.6.2 |
| 14-Oct-2019 14:27:20 | Downloading https://files.pythonhosted.org/packages/96/53/3782b6cc03500c0949a7ba9dba0c70da95d63d0ed4a04446123987ff983f/openpyxl-1.6.2.tar.gz (199kB) |
| 14-Oct-2019 14:27:20 | Collecting pika==0.9.14 |
| 14-Oct-2019 14:27:20 | Downloading https://files.pythonhosted.org/packages/2b/5b/4c5b6eafc63e0985b926267579a1e2534af70df0a45932f0c23fcc5f1b88/pika-0.9.14.tar.gz (72kB) |
| 14-Oct-2019 14:27:21 | Collecting pymongo==3.2.1 |
| 14-Oct-2019 14:27:21 | Downloading https://files.pythonhosted.org/packages/d7/94/9aa9ddd3e885caa307c0db8af5a1f5d266d3db44e1ae89bd4e14841ab8d0/pymongo-3.2.1.tar.gz (647kB) |
| 14-Oct-2019 14:27:22 | Collecting pytz==2014.3 |
| 14-Oct-2019 14:27:22 | Downloading https://files.pythonhosted.org/packages/e2/8d/af599c0388f46775c6b039d8b9c4acda2f6ef86787312a35291fff4cb7ca/pytz-2014.3.tar.bz2 (158kB) |
| 14-Oct-2019 14:27:23 | Collecting requests==2.2.1 |
| 14-Oct-2019 14:27:23 | Downloading https://files.pythonhosted.org/packages/7d/15/6efffc6aee666e1456852c2bf1d483b46bf971a2d509b35a98fc3eae1c60/requests-2.2.1-py2.py3-none-any.whl (625kB) |
| 14-Oct-2019 14:27:23 | Requirement already satisfied: wsgiref==0.1.2 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 7)) (0.1.2) |
| 14-Oct-2019 14:27:23 | Collecting xlrd==0.9.3 |
| 14-Oct-2019 14:27:23 | Downloading https://files.pythonhosted.org/packages/b1/13/6fbcb55fef0b34c70cb3753741eaafc0e91553a1318653587a7d145caf15/xlrd-0.9.3.tar.gz (178kB) |
| 14-Oct-2019 14:27:24 | Installing collected packages: openpyxl, pika, pymongo, pytz, requests, xlrd |
| 14-Oct-2019 14:27:24 | Running setup.py install for openpyxl: started |
| 14-Oct-2019 14:27:24 | Running setup.py install for openpyxl: finished with status 'done' |
| 14-Oct-2019 14:27:24 | Found existing installation: pika 0.11.0 |
| 14-Oct-2019 14:27:24 | Uninstalling pika-0.11.0: |
| 14-Oct-2019 14:27:24 | Successfully uninstalled pika-0.11.0 |
| 14-Oct-2019 14:27:24 | Running setup.py install for pika: started |
| 14-Oct-2019 14:27:24 | Running setup.py install for pika: finished with status 'done' |
| 14-Oct-2019 14:27:24 | Running setup.py install for pymongo: started |
| 14-Oct-2019 14:27:25 | Running setup.py install for pymongo: finished with status 'done' |
| 14-Oct-2019 14:27:25 | Running setup.py install for pytz: started |
| 14-Oct-2019 14:27:25 | Running setup.py install for pytz: finished with status 'done' |
| 14-Oct-2019 14:27:25 | Found existing installation: requests 2.18.4 |
| 14-Oct-2019 14:27:25 | Uninstalling requests-2.18.4: |
| 14-Oct-2019 14:27:25 | Successfully uninstalled requests-2.18.4 |
| 14-Oct-2019 14:27:26 | Running setup.py install for xlrd: started |
| 14-Oct-2019 14:27:26 | Running setup.py install for xlrd: finished with status 'done' |
| 14-Oct-2019 14:27:26 | Successfully installed openpyxl-1.6.2 pika-0.9.14 pymongo-3.2.1 pytz-2014.3 requests-2.2.1 xlrd-0.9.3 |
| 14-Oct-2019 14:27:28 | Removing intermediate container 0e9a90416ce2 |
| 14-Oct-2019 14:27:28 | ---> 7f1820bc330d |
| 14-Oct-2019 14:27:28 | Step 8/11 : USER clowder |
| 14-Oct-2019 14:27:29 | ---> Running in 89c36933e220 |
| 14-Oct-2019 14:27:29 | Removing intermediate container 89c36933e220 |
| 14-Oct-2019 14:27:29 | ---> c4d3179d9bcf |
| 14-Oct-2019 14:27:29 | Step 9/11 : COPY entrypoint.sh *.py *.json /home/clowder/ |
| 14-Oct-2019 14:27:31 | ---> 2037da8d554f |
| 14-Oct-2019 14:27:31 | Step 10/11 : ENTRYPOINT ["/home/clowder/entrypoint.sh"] |
| 14-Oct-2019 14:27:31 | ---> Running in cf206bc9a2b6 |
| 14-Oct-2019 14:27:32 | Removing intermediate container cf206bc9a2b6 |
| 14-Oct-2019 14:27:32 | ---> 79e504c230ac |
| 14-Oct-2019 14:27:32 | Step 11/11 : CMD ["extractor"] |
| 14-Oct-2019 14:27:32 | ---> Running in 04f8389db2d9 |
| 14-Oct-2019 14:27:33 | Removing intermediate container 04f8389db2d9 |
| 14-Oct-2019 14:27:33 | ---> faefcf97d9ca |
| 14-Oct-2019 14:27:33 | Successfully built faefcf97d9ca |
| 14-Oct-2019 14:27:33 | Successfully tagged 6425:latest |
| 14-Oct-2019 14:27:34 | The push refers to repository [docker.io/clowder/extractors-msc-islet] |
| 14-Oct-2019 14:27:34 | 145dc835726b: Preparing |
| 14-Oct-2019 14:27:34 | 8a47f8ddc692: Preparing |
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| 14-Oct-2019 14:27:34 | f2297bdfc824: Waiting |
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| 14-Oct-2019 14:27:34 | c56153825175: Waiting |
| 14-Oct-2019 14:27:34 | a2022691bf95: Waiting |
| 14-Oct-2019 14:27:34 | 0cdb02ac1d86: Layer already exists |
| 14-Oct-2019 14:27:35 | f2297bdfc824: Layer already exists |
| 14-Oct-2019 14:27:35 | 0fbe2bcb1bf9: Layer already exists |
| 14-Oct-2019 14:27:35 | 59669fcdd5eb: Layer already exists |
| 14-Oct-2019 14:27:35 | 7f7a065d245a: Layer already exists |
| 14-Oct-2019 14:27:36 | 9b1f00be7344: Pushed |
| 14-Oct-2019 14:27:36 | 145dc835726b: Pushed |
| 14-Oct-2019 14:27:36 | f96e6b25195f: Layer already exists |
| 14-Oct-2019 14:27:36 | c56153825175: Layer already exists |
| 14-Oct-2019 14:27:36 | ae620432889d: Layer already exists |
| 14-Oct-2019 14:27:36 | a2022691bf95: Layer already exists |
| 14-Oct-2019 14:27:37 | 8a47f8ddc692: Pushed |
| 14-Oct-2019 14:27:42 | 37a74ce00bc8: Pushed |
| 14-Oct-2019 14:27:44 | browndog_v0.2.0: digest: sha256:cf7edeefc094b5887eae741b282e2ef6cb1e997867f3994730202ec075b75844 size: 3031 |
| 14-Oct-2019 14:27:44 | The push refers to repository [docker.io/clowder/extractors-msc-islet] |
| 14-Oct-2019 14:27:44 | 145dc835726b: Preparing |
| 14-Oct-2019 14:27:44 | 8a47f8ddc692: Preparing |
| 14-Oct-2019 14:27:44 | 37a74ce00bc8: Preparing |
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| 14-Oct-2019 14:27:44 | c56153825175: Preparing |
| 14-Oct-2019 14:27:44 | ae620432889d: Preparing |
| 14-Oct-2019 14:27:44 | a2022691bf95: Preparing |
| 14-Oct-2019 14:27:44 | f2297bdfc824: Waiting |
| 14-Oct-2019 14:27:44 | 0fbe2bcb1bf9: Waiting |
| 14-Oct-2019 14:27:44 | 59669fcdd5eb: Waiting |
| 14-Oct-2019 14:27:44 | 7f7a065d245a: Waiting |
| 14-Oct-2019 14:27:44 | f96e6b25195f: Waiting |
| 14-Oct-2019 14:27:44 | c56153825175: Waiting |
| 14-Oct-2019 14:27:44 | ae620432889d: Waiting |
| 14-Oct-2019 14:27:44 | a2022691bf95: Waiting |
| 14-Oct-2019 14:27:45 | 0cdb02ac1d86: Layer already exists |
| 14-Oct-2019 14:27:45 | 145dc835726b: Layer already exists |
| 14-Oct-2019 14:27:45 | 37a74ce00bc8: Layer already exists |
| 14-Oct-2019 14:27:45 | 8a47f8ddc692: Layer already exists |
| 14-Oct-2019 14:27:45 | 9b1f00be7344: Layer already exists |
| 14-Oct-2019 14:27:45 | f2297bdfc824: Layer already exists |
| 14-Oct-2019 14:27:45 | 0fbe2bcb1bf9: Layer already exists |
| 14-Oct-2019 14:27:45 | 59669fcdd5eb: Layer already exists |
| 14-Oct-2019 14:27:45 | 7f7a065d245a: Layer already exists |
| 14-Oct-2019 14:27:45 | f96e6b25195f: Layer already exists |
| 14-Oct-2019 14:27:45 | c56153825175: Layer already exists |
| 14-Oct-2019 14:27:45 | a2022691bf95: Layer already exists |
| 14-Oct-2019 14:27:45 | ae620432889d: Layer already exists |
| 14-Oct-2019 14:27:46 | browndog_v0.3.0: digest: sha256:cf7edeefc094b5887eae741b282e2ef6cb1e997867f3994730202ec075b75844 size: 3031 |
| 14-Oct-2019 14:27:46 | The push refers to repository [docker.io/clowder/extractors-msc-islet] |
| 14-Oct-2019 14:27:46 | 145dc835726b: Preparing |
| 14-Oct-2019 14:27:46 | 8a47f8ddc692: Preparing |
| 14-Oct-2019 14:27:46 | 37a74ce00bc8: Preparing |
| 14-Oct-2019 14:27:46 | 9b1f00be7344: Preparing |
| 14-Oct-2019 14:27:46 | 0cdb02ac1d86: Preparing |
| 14-Oct-2019 14:27:46 | f2297bdfc824: Preparing |
| 14-Oct-2019 14:27:46 | 0fbe2bcb1bf9: Preparing |
| 14-Oct-2019 14:27:46 | 59669fcdd5eb: Preparing |
| 14-Oct-2019 14:27:46 | 7f7a065d245a: Preparing |
| 14-Oct-2019 14:27:46 | f96e6b25195f: Preparing |
| 14-Oct-2019 14:27:46 | c56153825175: Preparing |
| 14-Oct-2019 14:27:46 | ae620432889d: Preparing |
| 14-Oct-2019 14:27:46 | a2022691bf95: Preparing |
| 14-Oct-2019 14:27:46 | 59669fcdd5eb: Waiting |
| 14-Oct-2019 14:27:46 | f2297bdfc824: Waiting |
| 14-Oct-2019 14:27:46 | 0fbe2bcb1bf9: Waiting |
| 14-Oct-2019 14:27:46 | c56153825175: Waiting |
| 14-Oct-2019 14:27:46 | 7f7a065d245a: Waiting |
| 14-Oct-2019 14:27:46 | f96e6b25195f: Waiting |
| 14-Oct-2019 14:27:46 | ae620432889d: Waiting |
| 14-Oct-2019 14:27:46 | a2022691bf95: Waiting |
| 14-Oct-2019 14:27:47 | 37a74ce00bc8: Layer already exists |
| 14-Oct-2019 14:27:47 | 9b1f00be7344: Layer already exists |
| 14-Oct-2019 14:27:47 | 0cdb02ac1d86: Layer already exists |
| 14-Oct-2019 14:27:47 | 8a47f8ddc692: Layer already exists |
| 14-Oct-2019 14:27:47 | 145dc835726b: Layer already exists |
| 14-Oct-2019 14:27:47 | f2297bdfc824: Layer already exists |
| 14-Oct-2019 14:27:47 | 59669fcdd5eb: Layer already exists |
| 14-Oct-2019 14:27:47 | f96e6b25195f: Layer already exists |
| 14-Oct-2019 14:27:47 | 7f7a065d245a: Layer already exists |
| 14-Oct-2019 14:27:47 | 0fbe2bcb1bf9: Layer already exists |
| 14-Oct-2019 14:27:47 | c56153825175: Layer already exists |
| 14-Oct-2019 14:27:47 | ae620432889d: Layer already exists |
| 14-Oct-2019 14:27:47 | a2022691bf95: Layer already exists |
| 14-Oct-2019 14:27:48 | latest: digest: sha256:cf7edeefc094b5887eae741b282e2ef6cb1e997867f3994730202ec075b75844 size: 3031 |
| 14-Oct-2019 14:27:48 | Untagged: 6425:latest |
| 14-Oct-2019 14:27:48 | Sending build context to Docker daemon 66.05kB |
| 14-Oct-2019 14:27:48 | |
| 14-Oct-2019 14:27:48 | Step 1/11 : FROM clowder/pyclowder:1 |
| 14-Oct-2019 14:27:48 | ---> d1a9e970ed30 |
| 14-Oct-2019 14:27:48 | Step 2/11 : MAINTAINER Yan Zhao <yanzhao3@illinois.edu> |
| 14-Oct-2019 14:27:48 | ---> Using cache |
| 14-Oct-2019 14:27:48 | ---> 44d958d7f080 |
| 14-Oct-2019 14:27:48 | Step 3/11 : ENV RABBITMQ_URI="" RABBITMQ_EXCHANGE="clowder" RABBITMQ_VHOST="%2F" RABBITMQ_QUEUE="ncsa.msc.ChemCBCExtractor" MONGO_URI="" DB_USERNAME="" DB_PASSWORD="" MAIN_SCRIPT="extractor-Chem.py" |
| 14-Oct-2019 14:27:48 | ---> Running in a0221f5bd39f |
| 14-Oct-2019 14:27:49 | Removing intermediate container a0221f5bd39f |
| 14-Oct-2019 14:27:49 | ---> deee1cdd19a0 |
| 14-Oct-2019 14:27:49 | Step 4/11 : USER root |
| 14-Oct-2019 14:27:49 | ---> Running in 4854b1f74d86 |
| 14-Oct-2019 14:27:50 | Removing intermediate container 4854b1f74d86 |
| 14-Oct-2019 14:27:50 | ---> c0daf5415fd3 |
| 14-Oct-2019 14:27:50 | Step 5/11 : COPY requirements.txt /home/clowder/ |
| 14-Oct-2019 14:27:50 | ---> 99630fec015e |
| 14-Oct-2019 14:27:50 | Step 6/11 : RUN pip install --upgrade pip |
| 14-Oct-2019 14:27:51 | ---> Running in 961b21dc0adb |
| 14-Oct-2019 14:27:53 | Collecting pip |
| 14-Oct-2019 14:27:53 | Downloading https://files.pythonhosted.org/packages/4a/08/6ca123073af4ebc4c5488a5bc8a010ac57aa39ce4d3c8a931ad504de4185/pip-19.3-py2.py3-none-any.whl (1.4MB) |
| 14-Oct-2019 14:27:53 | Installing collected packages: pip |
| 14-Oct-2019 14:27:53 | Found existing installation: pip 8.1.1 |
| 14-Oct-2019 14:27:53 | Not uninstalling pip at /usr/lib/python2.7/dist-packages, outside environment /usr |
| 14-Oct-2019 14:27:54 | Successfully installed pip-19.3 |
| 14-Oct-2019 14:27:56 | Removing intermediate container 961b21dc0adb |
| 14-Oct-2019 14:27:56 | ---> 8a598b7ec959 |
| 14-Oct-2019 14:27:56 | Step 7/11 : RUN pip install -r /home/clowder/requirements.txt |
| 14-Oct-2019 14:27:57 | ---> Running in f6b03dec85ce |
| 14-Oct-2019 14:27:58 | DEPRECATION: Python 2.7 will reach the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 won't be maintained after that date. A future version of pip will drop support for Python 2.7. More details about Python 2 support in pip, can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support |
| 14-Oct-2019 14:27:58 | Requirement already satisfied: argparse==1.2.1 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 1)) (1.2.1) |
| 14-Oct-2019 14:27:59 | Collecting openpyxl==1.6.2 |
| 14-Oct-2019 14:27:59 | Downloading https://files.pythonhosted.org/packages/96/53/3782b6cc03500c0949a7ba9dba0c70da95d63d0ed4a04446123987ff983f/openpyxl-1.6.2.tar.gz (199kB) |
| 14-Oct-2019 14:27:59 | Collecting pika==0.9.14 |
| 14-Oct-2019 14:27:59 | Downloading https://files.pythonhosted.org/packages/2b/5b/4c5b6eafc63e0985b926267579a1e2534af70df0a45932f0c23fcc5f1b88/pika-0.9.14.tar.gz (72kB) |
| 14-Oct-2019 14:28:01 | Collecting pymongo==3.2.1 |
| 14-Oct-2019 14:28:01 | Downloading https://files.pythonhosted.org/packages/d7/94/9aa9ddd3e885caa307c0db8af5a1f5d266d3db44e1ae89bd4e14841ab8d0/pymongo-3.2.1.tar.gz (647kB) |
| 14-Oct-2019 14:28:01 | Collecting pytz==2014.3 |
| 14-Oct-2019 14:28:01 | Downloading https://files.pythonhosted.org/packages/e2/8d/af599c0388f46775c6b039d8b9c4acda2f6ef86787312a35291fff4cb7ca/pytz-2014.3.tar.bz2 (158kB) |
| 14-Oct-2019 14:28:02 | Collecting requests==2.2.1 |
| 14-Oct-2019 14:28:02 | Downloading https://files.pythonhosted.org/packages/7d/15/6efffc6aee666e1456852c2bf1d483b46bf971a2d509b35a98fc3eae1c60/requests-2.2.1-py2.py3-none-any.whl (625kB) |
| 14-Oct-2019 14:28:03 | Requirement already satisfied: wsgiref==0.1.2 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 7)) (0.1.2) |
| 14-Oct-2019 14:28:03 | Collecting xlrd==0.9.3 |
| 14-Oct-2019 14:28:03 | Downloading https://files.pythonhosted.org/packages/b1/13/6fbcb55fef0b34c70cb3753741eaafc0e91553a1318653587a7d145caf15/xlrd-0.9.3.tar.gz (178kB) |
| 14-Oct-2019 14:28:03 | Installing collected packages: openpyxl, pika, pymongo, pytz, requests, xlrd |
| 14-Oct-2019 14:28:03 | Running setup.py install for openpyxl: started |
| 14-Oct-2019 14:28:03 | Running setup.py install for openpyxl: finished with status 'done' |
| 14-Oct-2019 14:28:03 | Found existing installation: pika 0.11.0 |
| 14-Oct-2019 14:28:03 | Uninstalling pika-0.11.0: |
| 14-Oct-2019 14:28:03 | Successfully uninstalled pika-0.11.0 |
| 14-Oct-2019 14:28:03 | Running setup.py install for pika: started |
| 14-Oct-2019 14:28:04 | Running setup.py install for pika: finished with status 'done' |
| 14-Oct-2019 14:28:04 | Running setup.py install for pymongo: started |
| 14-Oct-2019 14:28:04 | Running setup.py install for pymongo: finished with status 'done' |
| 14-Oct-2019 14:28:04 | Running setup.py install for pytz: started |
| 14-Oct-2019 14:28:05 | Running setup.py install for pytz: finished with status 'done' |
| 14-Oct-2019 14:28:05 | Found existing installation: requests 2.18.4 |
| 14-Oct-2019 14:28:05 | Uninstalling requests-2.18.4: |
| 14-Oct-2019 14:28:05 | Successfully uninstalled requests-2.18.4 |
| 14-Oct-2019 14:28:05 | Running setup.py install for xlrd: started |
| 14-Oct-2019 14:28:05 | Running setup.py install for xlrd: finished with status 'done' |
| 14-Oct-2019 14:28:05 | Successfully installed openpyxl-1.6.2 pika-0.9.14 pymongo-3.2.1 pytz-2014.3 requests-2.2.1 xlrd-0.9.3 |
| 14-Oct-2019 14:28:08 | Removing intermediate container f6b03dec85ce |
| 14-Oct-2019 14:28:08 | ---> 693da8028561 |
| 14-Oct-2019 14:28:08 | Step 8/11 : USER clowder |
| 14-Oct-2019 14:28:08 | ---> Running in 9e105db23643 |
| 14-Oct-2019 14:28:09 | Removing intermediate container 9e105db23643 |
| 14-Oct-2019 14:28:09 | ---> 58f29dca427a |
| 14-Oct-2019 14:28:09 | Step 9/11 : COPY entrypoint.sh *.py *.json /home/clowder/ |
| 14-Oct-2019 14:28:11 | ---> 29798d378c4e |
| 14-Oct-2019 14:28:11 | Step 10/11 : ENTRYPOINT ["/home/clowder/entrypoint.sh"] |
| 14-Oct-2019 14:28:11 | ---> Running in 58f114579290 |
| 14-Oct-2019 14:28:13 | Removing intermediate container 58f114579290 |
| 14-Oct-2019 14:28:13 | ---> 5203ac8fd195 |
| 14-Oct-2019 14:28:13 | Step 11/11 : CMD ["extractor"] |
| 14-Oct-2019 14:28:14 | ---> Running in 16fd3cf76ef2 |
| 14-Oct-2019 14:28:15 | Removing intermediate container 16fd3cf76ef2 |
| 14-Oct-2019 14:28:15 | ---> 203284efbb9e |
| 14-Oct-2019 14:28:15 | Successfully built 203284efbb9e |
| 14-Oct-2019 14:28:15 | Successfully tagged 6425:latest |
| 14-Oct-2019 14:28:16 | The push refers to repository [docker.io/clowder/extractors-msc-chemcbc] |
| 14-Oct-2019 14:28:16 | 570961f93155: Preparing |
| 14-Oct-2019 14:28:16 | 2cd7b4454c9d: Preparing |
| 14-Oct-2019 14:28:16 | 0805aae57ba9: Preparing |
| 14-Oct-2019 14:28:16 | 5b690d815bf2: Preparing |
| 14-Oct-2019 14:28:16 | 0cdb02ac1d86: Preparing |
| 14-Oct-2019 14:28:16 | f2297bdfc824: Preparing |
| 14-Oct-2019 14:28:16 | 0fbe2bcb1bf9: Preparing |
| 14-Oct-2019 14:28:16 | 59669fcdd5eb: Preparing |
| 14-Oct-2019 14:28:16 | 7f7a065d245a: Preparing |
| 14-Oct-2019 14:28:16 | f96e6b25195f: Preparing |
| 14-Oct-2019 14:28:16 | c56153825175: Preparing |
| 14-Oct-2019 14:28:16 | ae620432889d: Preparing |
| 14-Oct-2019 14:28:16 | a2022691bf95: Preparing |
| 14-Oct-2019 14:28:16 | 59669fcdd5eb: Waiting |
| 14-Oct-2019 14:28:16 | 7f7a065d245a: Waiting |
| 14-Oct-2019 14:28:16 | f96e6b25195f: Waiting |
| 14-Oct-2019 14:28:16 | c56153825175: Waiting |
| 14-Oct-2019 14:28:16 | ae620432889d: Waiting |
| 14-Oct-2019 14:28:16 | a2022691bf95: Waiting |
| 14-Oct-2019 14:28:16 | f2297bdfc824: Waiting |
| 14-Oct-2019 14:28:16 | 0fbe2bcb1bf9: Waiting |
| 14-Oct-2019 14:28:16 | 0cdb02ac1d86: Layer already exists |
| 14-Oct-2019 14:28:17 | f2297bdfc824: Layer already exists |
| 14-Oct-2019 14:28:17 | 0fbe2bcb1bf9: Layer already exists |
| 14-Oct-2019 14:28:17 | 59669fcdd5eb: Layer already exists |
| 14-Oct-2019 14:28:17 | 7f7a065d245a: Layer already exists |
| 14-Oct-2019 14:28:18 | f96e6b25195f: Layer already exists |
| 14-Oct-2019 14:28:18 | 5b690d815bf2: Pushed |
| 14-Oct-2019 14:28:18 | c56153825175: Layer already exists |
| 14-Oct-2019 14:28:18 | 570961f93155: Pushed |
| 14-Oct-2019 14:28:18 | ae620432889d: Layer already exists |
| 14-Oct-2019 14:28:18 | a2022691bf95: Layer already exists |
| 14-Oct-2019 14:28:19 | 0805aae57ba9: Pushed |
| 14-Oct-2019 14:28:19 | 2cd7b4454c9d: Pushed |
| 14-Oct-2019 14:28:21 | browndog_v0.2.0: digest: sha256:f0329a7ace2e7ac25df26a6e0dce05b2281e7bd96892f3b8e061b51123d79eb4 size: 3031 |
| 14-Oct-2019 14:28:22 | The push refers to repository [docker.io/clowder/extractors-msc-chemcbc] |
| 14-Oct-2019 14:28:22 | 570961f93155: Preparing |
| 14-Oct-2019 14:28:22 | 2cd7b4454c9d: Preparing |
| 14-Oct-2019 14:28:22 | 0805aae57ba9: Preparing |
| 14-Oct-2019 14:28:22 | 5b690d815bf2: Preparing |
| 14-Oct-2019 14:28:22 | 0cdb02ac1d86: Preparing |
| 14-Oct-2019 14:28:22 | f2297bdfc824: Preparing |
| 14-Oct-2019 14:28:22 | 0fbe2bcb1bf9: Preparing |
| 14-Oct-2019 14:28:22 | 59669fcdd5eb: Preparing |
| 14-Oct-2019 14:28:22 | 7f7a065d245a: Preparing |
| 14-Oct-2019 14:28:22 | f96e6b25195f: Preparing |
| 14-Oct-2019 14:28:22 | c56153825175: Preparing |
| 14-Oct-2019 14:28:22 | ae620432889d: Preparing |
| 14-Oct-2019 14:28:22 | a2022691bf95: Preparing |
| 14-Oct-2019 14:28:22 | f2297bdfc824: Waiting |
| 14-Oct-2019 14:28:22 | 0fbe2bcb1bf9: Waiting |
| 14-Oct-2019 14:28:22 | 59669fcdd5eb: Waiting |
| 14-Oct-2019 14:28:22 | 7f7a065d245a: Waiting |
| 14-Oct-2019 14:28:22 | f96e6b25195f: Waiting |
| 14-Oct-2019 14:28:22 | c56153825175: Waiting |
| 14-Oct-2019 14:28:22 | ae620432889d: Waiting |
| 14-Oct-2019 14:28:22 | a2022691bf95: Waiting |
| 14-Oct-2019 14:28:22 | 2cd7b4454c9d: Layer already exists |
| 14-Oct-2019 14:28:22 | 5b690d815bf2: Layer already exists |
| 14-Oct-2019 14:28:22 | 570961f93155: Layer already exists |
| 14-Oct-2019 14:28:22 | 0cdb02ac1d86: Layer already exists |
| 14-Oct-2019 14:28:22 | 0805aae57ba9: Layer already exists |
| 14-Oct-2019 14:28:23 | 59669fcdd5eb: Layer already exists |
| 14-Oct-2019 14:28:23 | f2297bdfc824: Layer already exists |
| 14-Oct-2019 14:28:23 | 7f7a065d245a: Layer already exists |
| 14-Oct-2019 14:28:23 | f96e6b25195f: Layer already exists |
| 14-Oct-2019 14:28:23 | 0fbe2bcb1bf9: Layer already exists |
| 14-Oct-2019 14:28:23 | c56153825175: Layer already exists |
| 14-Oct-2019 14:28:23 | ae620432889d: Layer already exists |
| 14-Oct-2019 14:28:23 | a2022691bf95: Layer already exists |
| 14-Oct-2019 14:28:23 | browndog_v0.3.0: digest: sha256:f0329a7ace2e7ac25df26a6e0dce05b2281e7bd96892f3b8e061b51123d79eb4 size: 3031 |
| 14-Oct-2019 14:28:24 | The push refers to repository [docker.io/clowder/extractors-msc-chemcbc] |
| 14-Oct-2019 14:28:24 | 570961f93155: Preparing |
| 14-Oct-2019 14:28:24 | 2cd7b4454c9d: Preparing |
| 14-Oct-2019 14:28:24 | 0805aae57ba9: Preparing |
| 14-Oct-2019 14:28:24 | 5b690d815bf2: Preparing |
| 14-Oct-2019 14:28:24 | 0cdb02ac1d86: Preparing |
| 14-Oct-2019 14:28:24 | f2297bdfc824: Preparing |
| 14-Oct-2019 14:28:24 | 0fbe2bcb1bf9: Preparing |
| 14-Oct-2019 14:28:24 | 59669fcdd5eb: Preparing |
| 14-Oct-2019 14:28:24 | 7f7a065d245a: Preparing |
| 14-Oct-2019 14:28:24 | f96e6b25195f: Preparing |
| 14-Oct-2019 14:28:24 | c56153825175: Preparing |
| 14-Oct-2019 14:28:24 | ae620432889d: Preparing |
| 14-Oct-2019 14:28:24 | a2022691bf95: Preparing |
| 14-Oct-2019 14:28:24 | f2297bdfc824: Waiting |
| 14-Oct-2019 14:28:24 | 0fbe2bcb1bf9: Waiting |
| 14-Oct-2019 14:28:24 | 59669fcdd5eb: Waiting |
| 14-Oct-2019 14:28:24 | 7f7a065d245a: Waiting |
| 14-Oct-2019 14:28:24 | f96e6b25195f: Waiting |
| 14-Oct-2019 14:28:24 | c56153825175: Waiting |
| 14-Oct-2019 14:28:24 | ae620432889d: Waiting |
| 14-Oct-2019 14:28:24 | 570961f93155: Layer already exists |
| 14-Oct-2019 14:28:24 | 0cdb02ac1d86: Layer already exists |
| 14-Oct-2019 14:28:24 | 0805aae57ba9: Layer already exists |
| 14-Oct-2019 14:28:24 | 5b690d815bf2: Layer already exists |
| 14-Oct-2019 14:28:24 | 2cd7b4454c9d: Layer already exists |
| 14-Oct-2019 14:28:24 | 0fbe2bcb1bf9: Layer already exists |
| 14-Oct-2019 14:28:24 | 7f7a065d245a: Layer already exists |
| 14-Oct-2019 14:28:24 | 59669fcdd5eb: Layer already exists |
| 14-Oct-2019 14:28:24 | f96e6b25195f: Layer already exists |
| 14-Oct-2019 14:28:24 | f2297bdfc824: Layer already exists |
| 14-Oct-2019 14:28:25 | a2022691bf95: Layer already exists |
| 14-Oct-2019 14:28:25 | c56153825175: Layer already exists |
| 14-Oct-2019 14:28:25 | ae620432889d: Layer already exists |
| 14-Oct-2019 14:28:25 | latest: digest: sha256:f0329a7ace2e7ac25df26a6e0dce05b2281e7bd96892f3b8e061b51123d79eb4 size: 3031 |
| 14-Oct-2019 14:28:25 | Untagged: 6425:latest |
| 14-Oct-2019 14:28:25 | Sending build context to Docker daemon 198.1kB |
| 14-Oct-2019 14:28:25 | |
| 14-Oct-2019 14:28:26 | Step 1/11 : FROM clowder/pyclowder:1 |
| 14-Oct-2019 14:28:26 | ---> d1a9e970ed30 |
| 14-Oct-2019 14:28:26 | Step 2/11 : MAINTAINER Yan Zhao <yanzhao3@illinois.edu> |
| 14-Oct-2019 14:28:26 | ---> Using cache |
| 14-Oct-2019 14:28:26 | ---> 44d958d7f080 |
| 14-Oct-2019 14:28:26 | Step 3/11 : ENV RABBITMQ_URI="" RABBITMQ_EXCHANGE="clowder" RABBITMQ_VHOST="%2F" RABBITMQ_QUEUE="ncsa.msc.MonitorExtractor" MONGO_URI="" DB_USERNAME="" DB_PASSWORD="" MAIN_SCRIPT="extractor-Monitor.py" |
| 14-Oct-2019 14:28:26 | ---> Running in ae9f3e56923a |
| 14-Oct-2019 14:28:28 | Removing intermediate container ae9f3e56923a |
| 14-Oct-2019 14:28:28 | ---> c341877b4538 |
| 14-Oct-2019 14:28:28 | Step 4/11 : USER root |
| 14-Oct-2019 14:28:28 | ---> Running in 984402cd75d1 |
| 14-Oct-2019 14:28:30 | Removing intermediate container 984402cd75d1 |
| 14-Oct-2019 14:28:30 | ---> 557d18a80782 |
| 14-Oct-2019 14:28:30 | Step 5/11 : COPY requirements.txt /home/clowder/ |
| 14-Oct-2019 14:28:31 | ---> 83e051313530 |
| 14-Oct-2019 14:28:31 | Step 6/11 : RUN pip install --upgrade pip |
| 14-Oct-2019 14:28:32 | ---> Running in bf077b1ad448 |
| 14-Oct-2019 14:28:34 | Collecting pip |
| 14-Oct-2019 14:28:34 | Downloading https://files.pythonhosted.org/packages/4a/08/6ca123073af4ebc4c5488a5bc8a010ac57aa39ce4d3c8a931ad504de4185/pip-19.3-py2.py3-none-any.whl (1.4MB) |
| 14-Oct-2019 14:28:34 | Installing collected packages: pip |
| 14-Oct-2019 14:28:34 | Found existing installation: pip 8.1.1 |
| 14-Oct-2019 14:28:34 | Not uninstalling pip at /usr/lib/python2.7/dist-packages, outside environment /usr |
| 14-Oct-2019 14:28:35 | Successfully installed pip-19.3 |
| 14-Oct-2019 14:28:38 | Removing intermediate container bf077b1ad448 |
| 14-Oct-2019 14:28:38 | ---> 307013a99ef2 |
| 14-Oct-2019 14:28:38 | Step 7/11 : RUN pip install -r /home/clowder/requirements.txt |
| 14-Oct-2019 14:28:39 | ---> Running in 4d4ad1429dcf |
| 14-Oct-2019 14:28:41 | DEPRECATION: Python 2.7 will reach the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 won't be maintained after that date. A future version of pip will drop support for Python 2.7. More details about Python 2 support in pip, can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support |
| 14-Oct-2019 14:28:41 | Requirement already satisfied: argparse==1.2.1 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 1)) (1.2.1) |
| 14-Oct-2019 14:28:41 | Collecting openpyxl==1.6.2 |
| 14-Oct-2019 14:28:41 | Downloading https://files.pythonhosted.org/packages/96/53/3782b6cc03500c0949a7ba9dba0c70da95d63d0ed4a04446123987ff983f/openpyxl-1.6.2.tar.gz (199kB) |
| 14-Oct-2019 14:28:42 | Collecting pika==0.9.14 |
| 14-Oct-2019 14:28:42 | Downloading https://files.pythonhosted.org/packages/2b/5b/4c5b6eafc63e0985b926267579a1e2534af70df0a45932f0c23fcc5f1b88/pika-0.9.14.tar.gz (72kB) |
| 14-Oct-2019 14:28:43 | Collecting pymongo==3.2.1 |
| 14-Oct-2019 14:28:43 | Downloading https://files.pythonhosted.org/packages/d7/94/9aa9ddd3e885caa307c0db8af5a1f5d266d3db44e1ae89bd4e14841ab8d0/pymongo-3.2.1.tar.gz (647kB) |
| 14-Oct-2019 14:28:44 | Collecting pytz==2014.3 |
| 14-Oct-2019 14:28:44 | Downloading https://files.pythonhosted.org/packages/e2/8d/af599c0388f46775c6b039d8b9c4acda2f6ef86787312a35291fff4cb7ca/pytz-2014.3.tar.bz2 (158kB) |
| 14-Oct-2019 14:28:45 | Collecting requests==2.2.1 |
| 14-Oct-2019 14:28:45 | Downloading https://files.pythonhosted.org/packages/7d/15/6efffc6aee666e1456852c2bf1d483b46bf971a2d509b35a98fc3eae1c60/requests-2.2.1-py2.py3-none-any.whl (625kB) |
| 14-Oct-2019 14:28:45 | Requirement already satisfied: wsgiref==0.1.2 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 7)) (0.1.2) |
| 14-Oct-2019 14:28:45 | Collecting xlrd==0.9.3 |
| 14-Oct-2019 14:28:45 | Downloading https://files.pythonhosted.org/packages/b1/13/6fbcb55fef0b34c70cb3753741eaafc0e91553a1318653587a7d145caf15/xlrd-0.9.3.tar.gz (178kB) |
| 14-Oct-2019 14:28:46 | Installing collected packages: openpyxl, pika, pymongo, pytz, requests, xlrd |
| 14-Oct-2019 14:28:46 | Running setup.py install for openpyxl: started |
| 14-Oct-2019 14:28:46 | Running setup.py install for openpyxl: finished with status 'done' |
| 14-Oct-2019 14:28:46 | Found existing installation: pika 0.11.0 |
| 14-Oct-2019 14:28:46 | Uninstalling pika-0.11.0: |
| 14-Oct-2019 14:28:46 | Successfully uninstalled pika-0.11.0 |
| 14-Oct-2019 14:28:46 | Running setup.py install for pika: started |
| 14-Oct-2019 14:28:46 | Running setup.py install for pika: finished with status 'done' |
| 14-Oct-2019 14:28:46 | Running setup.py install for pymongo: started |
| 14-Oct-2019 14:28:47 | Running setup.py install for pymongo: finished with status 'done' |
| 14-Oct-2019 14:28:47 | Running setup.py install for pytz: started |
| 14-Oct-2019 14:28:47 | Running setup.py install for pytz: finished with status 'done' |
| 14-Oct-2019 14:28:47 | Found existing installation: requests 2.18.4 |
| 14-Oct-2019 14:28:47 | Uninstalling requests-2.18.4: |
| 14-Oct-2019 14:28:47 | Successfully uninstalled requests-2.18.4 |
| 14-Oct-2019 14:28:48 | Running setup.py install for xlrd: started |
| 14-Oct-2019 14:28:48 | Running setup.py install for xlrd: finished with status 'done' |
| 14-Oct-2019 14:28:48 | Successfully installed openpyxl-1.6.2 pika-0.9.14 pymongo-3.2.1 pytz-2014.3 requests-2.2.1 xlrd-0.9.3 |
| 14-Oct-2019 14:28:51 | Removing intermediate container 4d4ad1429dcf |
| 14-Oct-2019 14:28:51 | ---> 6972ff6edb28 |
| 14-Oct-2019 14:28:51 | Step 8/11 : USER clowder |
| 14-Oct-2019 14:28:52 | ---> Running in 293d74242ab6 |
| 14-Oct-2019 14:28:54 | Removing intermediate container 293d74242ab6 |
| 14-Oct-2019 14:28:54 | ---> bc2a563d9b90 |
| 14-Oct-2019 14:28:54 | Step 9/11 : COPY entrypoint.sh *.py *.json /home/clowder/ |
| 14-Oct-2019 14:28:55 | ---> f31c95493cc6 |
| 14-Oct-2019 14:28:55 | Step 10/11 : ENTRYPOINT ["/home/clowder/entrypoint.sh"] |
| 14-Oct-2019 14:28:56 | ---> Running in 4bfa5c016349 |
| 14-Oct-2019 14:28:57 | Removing intermediate container 4bfa5c016349 |
| 14-Oct-2019 14:28:57 | ---> 98f3404a497e |
| 14-Oct-2019 14:28:57 | Step 11/11 : CMD ["extractor"] |
| 14-Oct-2019 14:28:57 | ---> Running in 0ce4d9151d6f |
| 14-Oct-2019 14:28:59 | Removing intermediate container 0ce4d9151d6f |
| 14-Oct-2019 14:28:59 | ---> 225067a2eac8 |
| 14-Oct-2019 14:28:59 | Successfully built 225067a2eac8 |
| 14-Oct-2019 14:28:59 | Successfully tagged 6425:latest |
| 14-Oct-2019 14:28:59 | The push refers to repository [docker.io/clowder/extractors-msc-monitor] |
| 14-Oct-2019 14:28:59 | b7914381c878: Preparing |
| 14-Oct-2019 14:28:59 | c7de75edec02: Preparing |
| 14-Oct-2019 14:28:59 | 6fd2f0eb8134: Preparing |
| 14-Oct-2019 14:28:59 | 3f1c9693144a: Preparing |
| 14-Oct-2019 14:28:59 | 0cdb02ac1d86: Preparing |
| 14-Oct-2019 14:28:59 | f2297bdfc824: Preparing |
| 14-Oct-2019 14:28:59 | 0fbe2bcb1bf9: Preparing |
| 14-Oct-2019 14:28:59 | 59669fcdd5eb: Preparing |
| 14-Oct-2019 14:28:59 | 7f7a065d245a: Preparing |
| 14-Oct-2019 14:28:59 | f96e6b25195f: Preparing |
| 14-Oct-2019 14:28:59 | c56153825175: Preparing |
| 14-Oct-2019 14:28:59 | ae620432889d: Preparing |
| 14-Oct-2019 14:28:59 | a2022691bf95: Preparing |
| 14-Oct-2019 14:28:59 | f2297bdfc824: Waiting |
| 14-Oct-2019 14:28:59 | 0fbe2bcb1bf9: Waiting |
| 14-Oct-2019 14:28:59 | 59669fcdd5eb: Waiting |
| 14-Oct-2019 14:28:59 | 7f7a065d245a: Waiting |
| 14-Oct-2019 14:28:59 | f96e6b25195f: Waiting |
| 14-Oct-2019 14:28:59 | c56153825175: Waiting |
| 14-Oct-2019 14:28:59 | ae620432889d: Waiting |
| 14-Oct-2019 14:28:59 | a2022691bf95: Waiting |
| 14-Oct-2019 14:29:00 | 0cdb02ac1d86: Layer already exists |
| 14-Oct-2019 14:29:00 | f2297bdfc824: Layer already exists |
| 14-Oct-2019 14:29:00 | 0fbe2bcb1bf9: Layer already exists |
| 14-Oct-2019 14:29:01 | 59669fcdd5eb: Layer already exists |
| 14-Oct-2019 14:29:01 | 7f7a065d245a: Layer already exists |
| 14-Oct-2019 14:29:01 | b7914381c878: Pushed |
| 14-Oct-2019 14:29:01 | 3f1c9693144a: Pushed |
| 14-Oct-2019 14:29:01 | f96e6b25195f: Layer already exists |
| 14-Oct-2019 14:29:01 | c56153825175: Layer already exists |
| 14-Oct-2019 14:29:02 | ae620432889d: Layer already exists |
| 14-Oct-2019 14:29:02 | a2022691bf95: Layer already exists |
| 14-Oct-2019 14:29:02 | 6fd2f0eb8134: Pushed |
| 14-Oct-2019 14:29:02 | c7de75edec02: Pushed |
| 14-Oct-2019 14:29:05 | browndog_v0.2.0: digest: sha256:acd635bb9a5d62551cb5fe548341b89be06bc0ff0597d8efbb5bfe64d5af4465 size: 3031 |
| 14-Oct-2019 14:29:06 | The push refers to repository [docker.io/clowder/extractors-msc-monitor] |
| 14-Oct-2019 14:29:06 | b7914381c878: Preparing |
| 14-Oct-2019 14:29:06 | c7de75edec02: Preparing |
| 14-Oct-2019 14:29:06 | 6fd2f0eb8134: Preparing |
| 14-Oct-2019 14:29:06 | 3f1c9693144a: Preparing |
| 14-Oct-2019 14:29:06 | 0cdb02ac1d86: Preparing |
| 14-Oct-2019 14:29:06 | f2297bdfc824: Preparing |
| 14-Oct-2019 14:29:06 | 0fbe2bcb1bf9: Preparing |
| 14-Oct-2019 14:29:06 | 59669fcdd5eb: Preparing |
| 14-Oct-2019 14:29:06 | 7f7a065d245a: Preparing |
| 14-Oct-2019 14:29:06 | f96e6b25195f: Preparing |
| 14-Oct-2019 14:29:06 | c56153825175: Preparing |
| 14-Oct-2019 14:29:06 | ae620432889d: Preparing |
| 14-Oct-2019 14:29:06 | a2022691bf95: Preparing |
| 14-Oct-2019 14:29:06 | f2297bdfc824: Waiting |
| 14-Oct-2019 14:29:06 | 0fbe2bcb1bf9: Waiting |
| 14-Oct-2019 14:29:06 | 59669fcdd5eb: Waiting |
| 14-Oct-2019 14:29:06 | 7f7a065d245a: Waiting |
| 14-Oct-2019 14:29:06 | f96e6b25195f: Waiting |
| 14-Oct-2019 14:29:06 | c56153825175: Waiting |
| 14-Oct-2019 14:29:06 | ae620432889d: Waiting |
| 14-Oct-2019 14:29:06 | a2022691bf95: Waiting |
| 14-Oct-2019 14:29:06 | 3f1c9693144a: Layer already exists |
| 14-Oct-2019 14:29:06 | 6fd2f0eb8134: Layer already exists |
| 14-Oct-2019 14:29:06 | 0cdb02ac1d86: Layer already exists |
| 14-Oct-2019 14:29:06 | c7de75edec02: Layer already exists |
| 14-Oct-2019 14:29:06 | b7914381c878: Layer already exists |
| 14-Oct-2019 14:29:07 | 0fbe2bcb1bf9: Layer already exists |
| 14-Oct-2019 14:29:07 | f2297bdfc824: Layer already exists |
| 14-Oct-2019 14:29:07 | 7f7a065d245a: Layer already exists |
| 14-Oct-2019 14:29:07 | 59669fcdd5eb: Layer already exists |
| 14-Oct-2019 14:29:07 | f96e6b25195f: Layer already exists |
| 14-Oct-2019 14:29:07 | a2022691bf95: Layer already exists |
| 14-Oct-2019 14:29:07 | ae620432889d: Layer already exists |
| 14-Oct-2019 14:29:07 | c56153825175: Layer already exists |
| 14-Oct-2019 14:29:07 | browndog_v0.3.0: digest: sha256:acd635bb9a5d62551cb5fe548341b89be06bc0ff0597d8efbb5bfe64d5af4465 size: 3031 |
| 14-Oct-2019 14:29:08 | The push refers to repository [docker.io/clowder/extractors-msc-monitor] |
| 14-Oct-2019 14:29:08 | b7914381c878: Preparing |
| 14-Oct-2019 14:29:08 | c7de75edec02: Preparing |
| 14-Oct-2019 14:29:08 | 6fd2f0eb8134: Preparing |
| 14-Oct-2019 14:29:08 | 3f1c9693144a: Preparing |
| 14-Oct-2019 14:29:08 | 0cdb02ac1d86: Preparing |
| 14-Oct-2019 14:29:08 | f2297bdfc824: Preparing |
| 14-Oct-2019 14:29:08 | 0fbe2bcb1bf9: Preparing |
| 14-Oct-2019 14:29:08 | 59669fcdd5eb: Preparing |
| 14-Oct-2019 14:29:08 | 7f7a065d245a: Preparing |
| 14-Oct-2019 14:29:08 | f96e6b25195f: Preparing |
| 14-Oct-2019 14:29:08 | c56153825175: Preparing |
| 14-Oct-2019 14:29:08 | ae620432889d: Preparing |
| 14-Oct-2019 14:29:08 | a2022691bf95: Preparing |
| 14-Oct-2019 14:29:08 | 7f7a065d245a: Waiting |
| 14-Oct-2019 14:29:08 | f96e6b25195f: Waiting |
| 14-Oct-2019 14:29:08 | c56153825175: Waiting |
| 14-Oct-2019 14:29:08 | ae620432889d: Waiting |
| 14-Oct-2019 14:29:08 | a2022691bf95: Waiting |
| 14-Oct-2019 14:29:08 | 0fbe2bcb1bf9: Waiting |
| 14-Oct-2019 14:29:08 | 59669fcdd5eb: Waiting |
| 14-Oct-2019 14:29:08 | f2297bdfc824: Waiting |
| 14-Oct-2019 14:29:08 | 3f1c9693144a: Layer already exists |
| 14-Oct-2019 14:29:08 | b7914381c878: Layer already exists |
| 14-Oct-2019 14:29:08 | c7de75edec02: Layer already exists |
| 14-Oct-2019 14:29:08 | 6fd2f0eb8134: Layer already exists |
| 14-Oct-2019 14:29:08 | 0cdb02ac1d86: Layer already exists |
| 14-Oct-2019 14:29:08 | f2297bdfc824: Layer already exists |
| 14-Oct-2019 14:29:08 | 59669fcdd5eb: Layer already exists |
| 14-Oct-2019 14:29:08 | f96e6b25195f: Layer already exists |
| 14-Oct-2019 14:29:09 | ae620432889d: Layer already exists |
| 14-Oct-2019 14:29:09 | 0fbe2bcb1bf9: Layer already exists |
| 14-Oct-2019 14:29:09 | a2022691bf95: Layer already exists |
| 14-Oct-2019 14:29:09 | 7f7a065d245a: Layer already exists |
| 14-Oct-2019 14:29:09 | c56153825175: Layer already exists |
| 14-Oct-2019 14:29:09 | latest: digest: sha256:acd635bb9a5d62551cb5fe548341b89be06bc0ff0597d8efbb5bfe64d5af4465 size: 3031 |
| 14-Oct-2019 14:29:10 | Untagged: 6425:latest |
| 14-Oct-2019 14:29:10 | Sending build context to Docker daemon 12.1MB |
| 14-Oct-2019 14:29:10 | |
| 14-Oct-2019 14:29:10 | Step 1/11 : FROM clowder/pyclowder:1 |
| 14-Oct-2019 14:29:10 | ---> d1a9e970ed30 |
| 14-Oct-2019 14:29:10 | Step 2/11 : MAINTAINER Yan Zhao <yanzhao3@illinois.edu> |
| 14-Oct-2019 14:29:10 | ---> Using cache |
| 14-Oct-2019 14:29:10 | ---> 44d958d7f080 |
| 14-Oct-2019 14:29:10 | Step 3/11 : ENV RABBITMQ_URI="" RABBITMQ_EXCHANGE="clowder" RABBITMQ_VHOST="%2F" RABBITMQ_QUEUE="ncsa.msc.PhenotypeExtractor" MONGO_URI="" DB_USERNAME="" DB_PASSWORD="" MAIN_SCRIPT="extractor-Phenotype.py" |
| 14-Oct-2019 14:29:10 | ---> Running in 1465ff6c8cd4 |
| 14-Oct-2019 14:29:11 | Removing intermediate container 1465ff6c8cd4 |
| 14-Oct-2019 14:29:11 | ---> b1f5dbcf10c9 |
| 14-Oct-2019 14:29:11 | Step 4/11 : USER root |
| 14-Oct-2019 14:29:12 | ---> Running in ea0d958ba088 |
| 14-Oct-2019 14:29:14 | Removing intermediate container ea0d958ba088 |
| 14-Oct-2019 14:29:14 | ---> d2c3810e54fa |
| 14-Oct-2019 14:29:14 | Step 5/11 : COPY requirements.txt /home/clowder/ |
| 14-Oct-2019 14:29:15 | ---> 1aad791cedb0 |
| 14-Oct-2019 14:29:15 | Step 6/11 : RUN pip install --upgrade pip |
| 14-Oct-2019 14:29:15 | ---> Running in 3011864a455e |
| 14-Oct-2019 14:29:18 | Collecting pip |
| 14-Oct-2019 14:29:18 | Downloading https://files.pythonhosted.org/packages/4a/08/6ca123073af4ebc4c5488a5bc8a010ac57aa39ce4d3c8a931ad504de4185/pip-19.3-py2.py3-none-any.whl (1.4MB) |
| 14-Oct-2019 14:29:18 | Installing collected packages: pip |
| 14-Oct-2019 14:29:18 | Found existing installation: pip 8.1.1 |
| 14-Oct-2019 14:29:18 | Not uninstalling pip at /usr/lib/python2.7/dist-packages, outside environment /usr |
| 14-Oct-2019 14:29:19 | Successfully installed pip-19.3 |
| 14-Oct-2019 14:29:22 | Removing intermediate container 3011864a455e |
| 14-Oct-2019 14:29:22 | ---> 88f1a5cc4c09 |
| 14-Oct-2019 14:29:22 | Step 7/11 : RUN pip install -r /home/clowder/requirements.txt |
| 14-Oct-2019 14:29:23 | ---> Running in 13be68fefa8c |
| 14-Oct-2019 14:29:25 | DEPRECATION: Python 2.7 will reach the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 won't be maintained after that date. A future version of pip will drop support for Python 2.7. More details about Python 2 support in pip, can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support |
| 14-Oct-2019 14:29:25 | Requirement already satisfied: argparse==1.2.1 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 1)) (1.2.1) |
| 14-Oct-2019 14:29:25 | Collecting openpyxl==1.6.2 |
| 14-Oct-2019 14:29:25 | Downloading https://files.pythonhosted.org/packages/96/53/3782b6cc03500c0949a7ba9dba0c70da95d63d0ed4a04446123987ff983f/openpyxl-1.6.2.tar.gz (199kB) |
| 14-Oct-2019 14:29:26 | Collecting pika==0.9.14 |
| 14-Oct-2019 14:29:26 | Downloading https://files.pythonhosted.org/packages/2b/5b/4c5b6eafc63e0985b926267579a1e2534af70df0a45932f0c23fcc5f1b88/pika-0.9.14.tar.gz (72kB) |
| 14-Oct-2019 14:29:27 | Collecting pymongo==3.2.1 |
| 14-Oct-2019 14:29:27 | Downloading https://files.pythonhosted.org/packages/d7/94/9aa9ddd3e885caa307c0db8af5a1f5d266d3db44e1ae89bd4e14841ab8d0/pymongo-3.2.1.tar.gz (647kB) |
| 14-Oct-2019 14:29:28 | Collecting pytz==2014.3 |
| 14-Oct-2019 14:29:28 | Downloading https://files.pythonhosted.org/packages/e2/8d/af599c0388f46775c6b039d8b9c4acda2f6ef86787312a35291fff4cb7ca/pytz-2014.3.tar.bz2 (158kB) |
| 14-Oct-2019 14:29:29 | Collecting requests==2.2.1 |
| 14-Oct-2019 14:29:29 | Downloading https://files.pythonhosted.org/packages/7d/15/6efffc6aee666e1456852c2bf1d483b46bf971a2d509b35a98fc3eae1c60/requests-2.2.1-py2.py3-none-any.whl (625kB) |
| 14-Oct-2019 14:29:29 | Requirement already satisfied: wsgiref==0.1.2 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 7)) (0.1.2) |
| 14-Oct-2019 14:29:29 | Collecting xlrd==0.9.3 |
| 14-Oct-2019 14:29:29 | Downloading https://files.pythonhosted.org/packages/b1/13/6fbcb55fef0b34c70cb3753741eaafc0e91553a1318653587a7d145caf15/xlrd-0.9.3.tar.gz (178kB) |
| 14-Oct-2019 14:29:30 | Installing collected packages: openpyxl, pika, pymongo, pytz, requests, xlrd |
| 14-Oct-2019 14:29:30 | Running setup.py install for openpyxl: started |
| 14-Oct-2019 14:29:30 | Running setup.py install for openpyxl: finished with status 'done' |
| 14-Oct-2019 14:29:30 | Found existing installation: pika 0.11.0 |
| 14-Oct-2019 14:29:30 | Uninstalling pika-0.11.0: |
| 14-Oct-2019 14:29:30 | Successfully uninstalled pika-0.11.0 |
| 14-Oct-2019 14:29:30 | Running setup.py install for pika: started |
| 14-Oct-2019 14:29:30 | Running setup.py install for pika: finished with status 'done' |
| 14-Oct-2019 14:29:30 | Running setup.py install for pymongo: started |
| 14-Oct-2019 14:29:31 | Running setup.py install for pymongo: finished with status 'done' |
| 14-Oct-2019 14:29:31 | Running setup.py install for pytz: started |
| 14-Oct-2019 14:29:31 | Running setup.py install for pytz: finished with status 'done' |
| 14-Oct-2019 14:29:31 | Found existing installation: requests 2.18.4 |
| 14-Oct-2019 14:29:31 | Uninstalling requests-2.18.4: |
| 14-Oct-2019 14:29:31 | Successfully uninstalled requests-2.18.4 |
| 14-Oct-2019 14:29:32 | Running setup.py install for xlrd: started |
| 14-Oct-2019 14:29:32 | Running setup.py install for xlrd: finished with status 'done' |
| 14-Oct-2019 14:29:32 | Successfully installed openpyxl-1.6.2 pika-0.9.14 pymongo-3.2.1 pytz-2014.3 requests-2.2.1 xlrd-0.9.3 |
| 14-Oct-2019 14:29:35 | Removing intermediate container 13be68fefa8c |
| 14-Oct-2019 14:29:35 | ---> ec2407caf365 |
| 14-Oct-2019 14:29:35 | Step 8/11 : USER clowder |
| 14-Oct-2019 14:29:36 | ---> Running in 907920385fe0 |
| 14-Oct-2019 14:29:37 | Removing intermediate container 907920385fe0 |
| 14-Oct-2019 14:29:37 | ---> 12244cfa6cb5 |
| 14-Oct-2019 14:29:37 | Step 9/11 : COPY entrypoint.sh *.py *.json /home/clowder/ |
| 14-Oct-2019 14:29:39 | ---> 151317816a09 |
| 14-Oct-2019 14:29:39 | Step 10/11 : ENTRYPOINT ["/home/clowder/entrypoint.sh"] |
| 14-Oct-2019 14:29:39 | ---> Running in 638cb9214f38 |
| 14-Oct-2019 14:29:40 | Removing intermediate container 638cb9214f38 |
| 14-Oct-2019 14:29:40 | ---> 40521f19762c |
| 14-Oct-2019 14:29:40 | Step 11/11 : CMD ["extractor"] |
| 14-Oct-2019 14:29:41 | ---> Running in a9c658ff67d3 |
| 14-Oct-2019 14:29:42 | Removing intermediate container a9c658ff67d3 |
| 14-Oct-2019 14:29:42 | ---> 329f15fafab8 |
| 14-Oct-2019 14:29:42 | Successfully built 329f15fafab8 |
| 14-Oct-2019 14:29:42 | Successfully tagged 6425:latest |
| 14-Oct-2019 14:29:43 | The push refers to repository [docker.io/clowder/extractors-msc-phenotype] |
| 14-Oct-2019 14:29:43 | de094b1bae13: Preparing |
| 14-Oct-2019 14:29:43 | 434168afd868: Preparing |
| 14-Oct-2019 14:29:43 | 5832517e6c3b: Preparing |
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| 14-Oct-2019 14:29:43 | a2022691bf95: Preparing |
| 14-Oct-2019 14:29:43 | f2297bdfc824: Waiting |
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| 14-Oct-2019 14:29:43 | c56153825175: Waiting |
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| 14-Oct-2019 14:29:43 | a2022691bf95: Waiting |
| 14-Oct-2019 14:29:43 | 0cdb02ac1d86: Layer already exists |
| 14-Oct-2019 14:29:43 | f2297bdfc824: Layer already exists |
| 14-Oct-2019 14:29:44 | 0fbe2bcb1bf9: Layer already exists |
| 14-Oct-2019 14:29:44 | 59669fcdd5eb: Layer already exists |
| 14-Oct-2019 14:29:44 | 7f7a065d245a: Layer already exists |
| 14-Oct-2019 14:29:45 | f96e6b25195f: Layer already exists |
| 14-Oct-2019 14:29:45 | de094b1bae13: Pushed |
| 14-Oct-2019 14:29:45 | c56153825175: Layer already exists |
| 14-Oct-2019 14:29:45 | ae620432889d: Layer already exists |
| 14-Oct-2019 14:29:45 | 98bb6360708c: Pushed |
| 14-Oct-2019 14:29:45 | a2022691bf95: Layer already exists |
| 14-Oct-2019 14:29:46 | 5832517e6c3b: Pushed |
| 14-Oct-2019 14:29:46 | 434168afd868: Pushed |
| 14-Oct-2019 14:29:48 | browndog_v0.2.0: digest: sha256:e2e4db03dbe34e01d05a7fa46743812a9aecf13790ef64676eaf32e5dee9df77 size: 3031 |
| 14-Oct-2019 14:29:49 | The push refers to repository [docker.io/clowder/extractors-msc-phenotype] |
| 14-Oct-2019 14:29:49 | de094b1bae13: Preparing |
| 14-Oct-2019 14:29:49 | 434168afd868: Preparing |
| 14-Oct-2019 14:29:49 | 5832517e6c3b: Preparing |
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| 14-Oct-2019 14:29:49 | a2022691bf95: Preparing |
| 14-Oct-2019 14:29:49 | f2297bdfc824: Waiting |
| 14-Oct-2019 14:29:49 | 0fbe2bcb1bf9: Waiting |
| 14-Oct-2019 14:29:49 | 59669fcdd5eb: Waiting |
| 14-Oct-2019 14:29:49 | 7f7a065d245a: Waiting |
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| 14-Oct-2019 14:29:49 | c56153825175: Waiting |
| 14-Oct-2019 14:29:49 | ae620432889d: Waiting |
| 14-Oct-2019 14:29:49 | a2022691bf95: Waiting |
| 14-Oct-2019 14:29:50 | de094b1bae13: Layer already exists |
| 14-Oct-2019 14:29:50 | 0cdb02ac1d86: Layer already exists |
| 14-Oct-2019 14:29:50 | 5832517e6c3b: Layer already exists |
| 14-Oct-2019 14:29:50 | 434168afd868: Layer already exists |
| 14-Oct-2019 14:29:50 | 98bb6360708c: Layer already exists |
| 14-Oct-2019 14:29:50 | f2297bdfc824: Layer already exists |
| 14-Oct-2019 14:29:50 | 0fbe2bcb1bf9: Layer already exists |
| 14-Oct-2019 14:29:50 | 7f7a065d245a: Layer already exists |
| 14-Oct-2019 14:29:50 | f96e6b25195f: Layer already exists |
| 14-Oct-2019 14:29:50 | a2022691bf95: Layer already exists |
| 14-Oct-2019 14:29:50 | 59669fcdd5eb: Layer already exists |
| 14-Oct-2019 14:29:50 | ae620432889d: Layer already exists |
| 14-Oct-2019 14:29:50 | c56153825175: Layer already exists |
| 14-Oct-2019 14:29:51 | browndog_v0.3.0: digest: sha256:e2e4db03dbe34e01d05a7fa46743812a9aecf13790ef64676eaf32e5dee9df77 size: 3031 |
| 14-Oct-2019 14:29:51 | The push refers to repository [docker.io/clowder/extractors-msc-phenotype] |
| 14-Oct-2019 14:29:51 | de094b1bae13: Preparing |
| 14-Oct-2019 14:29:51 | 434168afd868: Preparing |
| 14-Oct-2019 14:29:51 | 5832517e6c3b: Preparing |
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| 14-Oct-2019 14:29:51 | a2022691bf95: Preparing |
| 14-Oct-2019 14:29:51 | 7f7a065d245a: Waiting |
| 14-Oct-2019 14:29:51 | f96e6b25195f: Waiting |
| 14-Oct-2019 14:29:51 | c56153825175: Waiting |
| 14-Oct-2019 14:29:51 | ae620432889d: Waiting |
| 14-Oct-2019 14:29:51 | a2022691bf95: Waiting |
| 14-Oct-2019 14:29:51 | f2297bdfc824: Waiting |
| 14-Oct-2019 14:29:51 | 0fbe2bcb1bf9: Waiting |
| 14-Oct-2019 14:29:51 | 59669fcdd5eb: Waiting |
| 14-Oct-2019 14:29:51 | 5832517e6c3b: Layer already exists |
| 14-Oct-2019 14:29:51 | 98bb6360708c: Layer already exists |
| 14-Oct-2019 14:29:51 | 434168afd868: Layer already exists |
| 14-Oct-2019 14:29:51 | 0cdb02ac1d86: Layer already exists |
| 14-Oct-2019 14:29:52 | de094b1bae13: Layer already exists |
| 14-Oct-2019 14:29:52 | 0fbe2bcb1bf9: Layer already exists |
| 14-Oct-2019 14:29:52 | 7f7a065d245a: Layer already exists |
| 14-Oct-2019 14:29:52 | 59669fcdd5eb: Layer already exists |
| 14-Oct-2019 14:29:52 | f96e6b25195f: Layer already exists |
| 14-Oct-2019 14:29:52 | c56153825175: Layer already exists |
| 14-Oct-2019 14:29:52 | ae620432889d: Layer already exists |
| 14-Oct-2019 14:29:52 | a2022691bf95: Layer already exists |
| 14-Oct-2019 14:29:53 | f2297bdfc824: Layer already exists |
| 14-Oct-2019 14:29:54 | latest: digest: sha256:e2e4db03dbe34e01d05a7fa46743812a9aecf13790ef64676eaf32e5dee9df77 size: 3031 |
| 14-Oct-2019 14:29:54 | Untagged: 6425:latest |
| 14-Oct-2019 14:29:54 | Finished task 'docker build' with result: Success |
| 14-Oct-2019 14:29:54 | Running post build plugin 'Docker Container Cleanup' |
| 14-Oct-2019 14:29:54 | Running post build plugin 'NCover Results Collector' |
| 14-Oct-2019 14:29:54 | Running post build plugin 'Clover Results Collector' |
| 14-Oct-2019 14:29:54 | Running post build plugin 'npm Cache Cleanup' |
| 14-Oct-2019 14:29:54 | Running post build plugin 'Artifact Copier' |
| 14-Oct-2019 14:29:54 | Finalising the build... |
| 14-Oct-2019 14:29:54 | Stopping timer. |
| 14-Oct-2019 14:29:54 | Build CATS-MSC-JOB1-42 completed. |
| 14-Oct-2019 14:29:54 | Running on server: post build plugin 'NCover Results Collector' |
| 14-Oct-2019 14:29:54 | Running on server: post build plugin 'Build Hanging Detection Configuration' |
| 14-Oct-2019 14:29:54 | Running on server: post build plugin 'Clover Delta Calculator' |
| 14-Oct-2019 14:29:54 | Running on server: post build plugin 'Maven Dependencies Postprocessor' |
| 14-Oct-2019 14:29:54 | All post build plugins have finished |
| 14-Oct-2019 14:29:54 | Generating build results summary... |
| 14-Oct-2019 14:29:54 | Saving build results to disk... |
| 14-Oct-2019 14:29:54 | Logging substituted variables... |
| 14-Oct-2019 14:29:54 | Indexing build results... |
| 14-Oct-2019 14:29:54 | Finished building CATS-MSC-JOB1-42. |