Build: #43 was successful
Job: Default Job was successful
Build log
The build generated 1,063 lines of output. The output is too long and has been truncated to the last 1,000 lines. Download or view full build log.
| 30-Oct-2019 13:07:27 | 0 upgraded, 13 newly installed, 0 to remove and 59 not upgraded. |
| 30-Oct-2019 13:07:27 | Need to get 1402 kB of archives. |
| 30-Oct-2019 13:07:27 | After this operation, 5597 kB of additional disk space will be used. |
| 30-Oct-2019 13:07:27 | Get:1 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxau6 amd64 1:1.0.8-1 [8376 B] |
| 30-Oct-2019 13:07:27 | Get:2 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxdmcp6 amd64 1:1.1.2-1.1 [11.0 kB] |
| 30-Oct-2019 13:07:27 | Get:3 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcb1 amd64 1.11.1-1ubuntu1 [40.0 kB] |
| 30-Oct-2019 13:07:28 | Get:4 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libx11-data all 2:1.6.3-1ubuntu2.1 [113 kB] |
| 30-Oct-2019 13:07:28 | Get:5 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libx11-6 amd64 2:1.6.3-1ubuntu2.1 [570 kB] |
| 30-Oct-2019 13:07:29 | Get:6 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxext6 amd64 2:1.3.3-1 [29.4 kB] |
| 30-Oct-2019 13:07:29 | Get:7 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 x11-common all 1:7.7+13ubuntu3.1 [22.9 kB] |
| 30-Oct-2019 13:07:29 | Get:8 http://archive.ubuntu.com/ubuntu xenial/main amd64 libice6 amd64 2:1.0.9-1 [39.2 kB] |
| 30-Oct-2019 13:07:30 | Get:9 http://archive.ubuntu.com/ubuntu xenial/main amd64 libsm6 amd64 2:1.2.2-1 [15.8 kB] |
| 30-Oct-2019 13:07:30 | Get:10 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libidn11 amd64 1.32-3ubuntu1.2 [46.5 kB] |
| 30-Oct-2019 13:07:31 | Get:11 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 wget amd64 1.17.1-1ubuntu1.5 [299 kB] |
| 30-Oct-2019 13:07:31 | Get:12 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxt6 amd64 1:1.1.5-0ubuntu1 [160 kB] |
| 30-Oct-2019 13:07:32 | Get:13 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxmu6 amd64 2:1.1.2-2 [46.0 kB] |
| 30-Oct-2019 13:07:32 | debconf: delaying package configuration, since apt-utils is not installed |
| 30-Oct-2019 13:07:32 | Fetched 1402 kB in 5s (265 kB/s) |
| 30-Oct-2019 13:07:33 | Selecting previously unselected package libxau6:amd64. |
| 30-Oct-2019 13:07:33 | (Reading database ... |
| 30-Oct-2019 13:07:33 | (Reading database ... 5% |
| 30-Oct-2019 13:07:33 | (Reading database ... 10% |
| 30-Oct-2019 13:07:33 | (Reading database ... 15% |
| 30-Oct-2019 13:07:33 | (Reading database ... 20% |
| 30-Oct-2019 13:07:33 | (Reading database ... 25% |
| 30-Oct-2019 13:07:33 | (Reading database ... 30% |
| 30-Oct-2019 13:07:33 | (Reading database ... 35% |
| 30-Oct-2019 13:07:33 | (Reading database ... 40% |
| 30-Oct-2019 13:07:33 | (Reading database ... 45% |
| 30-Oct-2019 13:07:33 | (Reading database ... 50% |
| 30-Oct-2019 13:07:33 | (Reading database ... 55% |
| 30-Oct-2019 13:07:33 | (Reading database ... 60% |
| 30-Oct-2019 13:07:33 | (Reading database ... 65% |
| 30-Oct-2019 13:07:33 | (Reading database ... 70% |
| 30-Oct-2019 13:07:33 | (Reading database ... 75% |
| 30-Oct-2019 13:07:33 | (Reading database ... 80% |
| 30-Oct-2019 13:07:33 | (Reading database ... 85% |
| 30-Oct-2019 13:07:33 | (Reading database ... 90% |
| 30-Oct-2019 13:07:33 | (Reading database ... 95% |
| 30-Oct-2019 13:07:33 | (Reading database ... 100% |
| 30-Oct-2019 13:07:33 | (Reading database ... 6101 files and directories currently installed.) |
| 30-Oct-2019 13:07:33 | Preparing to unpack .../libxau6_1%3a1.0.8-1_amd64.deb ... |
| 30-Oct-2019 13:07:33 | Unpacking libxau6:amd64 (1:1.0.8-1) ... |
| 30-Oct-2019 13:07:33 | Selecting previously unselected package libxdmcp6:amd64. |
| 30-Oct-2019 13:07:33 | Preparing to unpack .../libxdmcp6_1%3a1.1.2-1.1_amd64.deb ... |
| 30-Oct-2019 13:07:33 | Unpacking libxdmcp6:amd64 (1:1.1.2-1.1) ... |
| 30-Oct-2019 13:07:34 | Selecting previously unselected package libxcb1:amd64. |
| 30-Oct-2019 13:07:34 | Preparing to unpack .../libxcb1_1.11.1-1ubuntu1_amd64.deb ... |
| 30-Oct-2019 13:07:35 | Unpacking libxcb1:amd64 (1.11.1-1ubuntu1) ... |
| 30-Oct-2019 13:07:35 | Selecting previously unselected package libx11-data. |
| 30-Oct-2019 13:07:35 | Preparing to unpack .../libx11-data_2%3a1.6.3-1ubuntu2.1_all.deb ... |
| 30-Oct-2019 13:07:36 | Unpacking libx11-data (2:1.6.3-1ubuntu2.1) ... |
| 30-Oct-2019 13:07:36 | Selecting previously unselected package libx11-6:amd64. |
| 30-Oct-2019 13:07:36 | Preparing to unpack .../libx11-6_2%3a1.6.3-1ubuntu2.1_amd64.deb ... |
| 30-Oct-2019 13:07:36 | Unpacking libx11-6:amd64 (2:1.6.3-1ubuntu2.1) ... |
| 30-Oct-2019 13:07:37 | Selecting previously unselected package libxext6:amd64. |
| 30-Oct-2019 13:07:37 | Preparing to unpack .../libxext6_2%3a1.3.3-1_amd64.deb ... |
| 30-Oct-2019 13:07:37 | Unpacking libxext6:amd64 (2:1.3.3-1) ... |
| 30-Oct-2019 13:07:38 | Selecting previously unselected package x11-common. |
| 30-Oct-2019 13:07:38 | Preparing to unpack .../x11-common_1%3a7.7+13ubuntu3.1_all.deb ... |
| 30-Oct-2019 13:07:38 | dpkg-query: no packages found matching nux-tools |
| 30-Oct-2019 13:07:38 | Unpacking x11-common (1:7.7+13ubuntu3.1) ... |
| 30-Oct-2019 13:07:39 | Selecting previously unselected package libice6:amd64. |
| 30-Oct-2019 13:07:39 | Preparing to unpack .../libice6_2%3a1.0.9-1_amd64.deb ... |
| 30-Oct-2019 13:07:40 | Unpacking libice6:amd64 (2:1.0.9-1) ... |
| 30-Oct-2019 13:07:40 | Selecting previously unselected package libsm6:amd64. |
| 30-Oct-2019 13:07:40 | Preparing to unpack .../libsm6_2%3a1.2.2-1_amd64.deb ... |
| 30-Oct-2019 13:07:41 | Unpacking libsm6:amd64 (2:1.2.2-1) ... |
| 30-Oct-2019 13:07:42 | Selecting previously unselected package libidn11:amd64. |
| 30-Oct-2019 13:07:42 | Preparing to unpack .../libidn11_1.32-3ubuntu1.2_amd64.deb ... |
| 30-Oct-2019 13:07:42 | Unpacking libidn11:amd64 (1.32-3ubuntu1.2) ... |
| 30-Oct-2019 13:07:43 | Selecting previously unselected package wget. |
| 30-Oct-2019 13:07:43 | Preparing to unpack .../wget_1.17.1-1ubuntu1.5_amd64.deb ... |
| 30-Oct-2019 13:07:43 | Unpacking wget (1.17.1-1ubuntu1.5) ... |
| 30-Oct-2019 13:07:43 | Selecting previously unselected package libxt6:amd64. |
| 30-Oct-2019 13:07:43 | Preparing to unpack .../libxt6_1%3a1.1.5-0ubuntu1_amd64.deb ... |
| 30-Oct-2019 13:07:44 | Unpacking libxt6:amd64 (1:1.1.5-0ubuntu1) ... |
| 30-Oct-2019 13:07:45 | Selecting previously unselected package libxmu6:amd64. |
| 30-Oct-2019 13:07:45 | Preparing to unpack .../libxmu6_2%3a1.1.2-2_amd64.deb ... |
| 30-Oct-2019 13:07:45 | Unpacking libxmu6:amd64 (2:1.1.2-2) ... |
| 30-Oct-2019 13:07:46 | Processing triggers for libc-bin (2.23-0ubuntu9) ... |
| 30-Oct-2019 13:07:46 | Processing triggers for systemd (229-4ubuntu19) ... |
| 30-Oct-2019 13:07:46 | Setting up libxau6:amd64 (1:1.0.8-1) ... |
| 30-Oct-2019 13:07:47 | Setting up libxdmcp6:amd64 (1:1.1.2-1.1) ... |
| 30-Oct-2019 13:07:47 | Setting up libxcb1:amd64 (1.11.1-1ubuntu1) ... |
| 30-Oct-2019 13:07:48 | Setting up libx11-data (2:1.6.3-1ubuntu2.1) ... |
| 30-Oct-2019 13:07:48 | Setting up libx11-6:amd64 (2:1.6.3-1ubuntu2.1) ... |
| 30-Oct-2019 13:07:49 | Setting up libxext6:amd64 (2:1.3.3-1) ... |
| 30-Oct-2019 13:07:49 | Setting up x11-common (1:7.7+13ubuntu3.1) ... |
| 30-Oct-2019 13:07:52 | debconf: unable to initialize frontend: Dialog |
| 30-Oct-2019 13:07:52 | debconf: (TERM is not set, so the dialog frontend is not usable.) |
| 30-Oct-2019 13:07:52 | debconf: falling back to frontend: Readline |
| 30-Oct-2019 13:07:52 | debconf: unable to initialize frontend: Readline |
| 30-Oct-2019 13:07:52 | debconf: (Can't locate Term/ReadLine.pm in @INC (you may need to install the Term::ReadLine module) (@INC contains: /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.22.1 /usr/local/share/perl/5.22.1 /usr/lib/x86_64-linux-gnu/perl5/5.22 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl/5.22 /usr/share/perl/5.22 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base .) at /usr/share/perl5/Debconf/FrontEnd/Readline.pm line 7.) |
| 30-Oct-2019 13:07:52 | debconf: falling back to frontend: Teletype |
| 30-Oct-2019 13:07:52 | update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults |
| 30-Oct-2019 13:07:52 | invoke-rc.d: could not determine current runlevel |
| 30-Oct-2019 13:07:52 | invoke-rc.d: policy-rc.d denied execution of start. |
| 30-Oct-2019 13:07:52 | Setting up libice6:amd64 (2:1.0.9-1) ... |
| 30-Oct-2019 13:07:53 | Setting up libsm6:amd64 (2:1.2.2-1) ... |
| 30-Oct-2019 13:07:53 | Setting up libidn11:amd64 (1.32-3ubuntu1.2) ... |
| 30-Oct-2019 13:07:54 | Setting up wget (1.17.1-1ubuntu1.5) ... |
| 30-Oct-2019 13:07:54 | Setting up libxt6:amd64 (1:1.1.5-0ubuntu1) ... |
| 30-Oct-2019 13:07:55 | Setting up libxmu6:amd64 (2:1.1.2-2) ... |
| 30-Oct-2019 13:07:55 | Processing triggers for libc-bin (2.23-0ubuntu9) ... |
| 30-Oct-2019 13:07:55 | Processing triggers for systemd (229-4ubuntu19) ... |
| 30-Oct-2019 13:07:57 | Removing intermediate container ebbd1971e9e1 |
| 30-Oct-2019 13:07:57 | ---> c9ac4a2ad2bc |
| 30-Oct-2019 13:07:57 | Step 8/11 : USER clowder |
| 30-Oct-2019 13:07:58 | ---> Running in edd00db5908b |
| 30-Oct-2019 13:07:58 | Removing intermediate container edd00db5908b |
| 30-Oct-2019 13:07:58 | ---> d18a82c8f4fa |
| 30-Oct-2019 13:07:58 | Step 9/11 : COPY entrypoint.sh *.py *.m data/*.mat *.json /home/clowder/ |
| 30-Oct-2019 13:08:00 | ---> e554722c2be6 |
| 30-Oct-2019 13:08:00 | Step 10/11 : ENTRYPOINT ["/home/clowder/entrypoint.sh"] |
| 30-Oct-2019 13:08:02 | ---> Running in d0fa64445aa5 |
| 30-Oct-2019 13:08:03 | Removing intermediate container d0fa64445aa5 |
| 30-Oct-2019 13:08:03 | ---> c3cc70cc12dd |
| 30-Oct-2019 13:08:03 | Step 11/11 : CMD ["extractor"] |
| 30-Oct-2019 13:08:04 | ---> Running in 3e0dac433f8e |
| 30-Oct-2019 13:08:04 | Removing intermediate container 3e0dac433f8e |
| 30-Oct-2019 13:08:04 | ---> db5c8f98f4fa |
| 30-Oct-2019 13:08:04 | Successfully built db5c8f98f4fa |
| 30-Oct-2019 13:08:04 | Successfully tagged 24169:latest |
| 30-Oct-2019 13:08:05 | The push refers to repository [docker.io/clowder/extractors-msc-kidney] |
| 30-Oct-2019 13:08:05 | 4e9f558717e8: Preparing |
| 30-Oct-2019 13:08:05 | 11bf6cf717a0: Preparing |
| 30-Oct-2019 13:08:05 | 939703534799: Preparing |
| 30-Oct-2019 13:08:05 | 0cdb02ac1d86: Preparing |
| 30-Oct-2019 13:08:05 | f2297bdfc824: Preparing |
| 30-Oct-2019 13:08:05 | 0fbe2bcb1bf9: Preparing |
| 30-Oct-2019 13:08:05 | 59669fcdd5eb: Preparing |
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| 30-Oct-2019 13:08:05 | f96e6b25195f: Preparing |
| 30-Oct-2019 13:08:05 | c56153825175: Preparing |
| 30-Oct-2019 13:08:05 | ae620432889d: Preparing |
| 30-Oct-2019 13:08:05 | a2022691bf95: Preparing |
| 30-Oct-2019 13:08:05 | f96e6b25195f: Waiting |
| 30-Oct-2019 13:08:05 | c56153825175: Waiting |
| 30-Oct-2019 13:08:05 | ae620432889d: Waiting |
| 30-Oct-2019 13:08:05 | 0fbe2bcb1bf9: Waiting |
| 30-Oct-2019 13:08:05 | a2022691bf95: Waiting |
| 30-Oct-2019 13:08:05 | 59669fcdd5eb: Waiting |
| 30-Oct-2019 13:08:05 | 7f7a065d245a: Waiting |
| 30-Oct-2019 13:08:05 | f2297bdfc824: Layer already exists |
| 30-Oct-2019 13:08:05 | 0cdb02ac1d86: Layer already exists |
| 30-Oct-2019 13:08:06 | 0fbe2bcb1bf9: Layer already exists |
| 30-Oct-2019 13:08:06 | 59669fcdd5eb: Layer already exists |
| 30-Oct-2019 13:08:06 | 7f7a065d245a: Layer already exists |
| 30-Oct-2019 13:08:06 | f96e6b25195f: Layer already exists |
| 30-Oct-2019 13:08:06 | ae620432889d: Layer already exists |
| 30-Oct-2019 13:08:06 | a2022691bf95: Layer already exists |
| 30-Oct-2019 13:08:07 | 4e9f558717e8: Pushed |
| 30-Oct-2019 13:08:08 | 11bf6cf717a0: Pushed |
| 30-Oct-2019 13:08:08 | 939703534799: Pushed |
| 30-Oct-2019 13:08:10 | c56153825175: Layer already exists |
| 30-Oct-2019 13:08:12 | browndog_v0.2.0: digest: sha256:9c1b647358d76220364d4c8ba6126711e3b25a8ea82433fec721e1701582b79e size: 2826 |
| 30-Oct-2019 13:08:12 | The push refers to repository [docker.io/clowder/extractors-msc-kidney] |
| 30-Oct-2019 13:08:12 | 4e9f558717e8: Preparing |
| 30-Oct-2019 13:08:12 | 11bf6cf717a0: Preparing |
| 30-Oct-2019 13:08:12 | 939703534799: Preparing |
| 30-Oct-2019 13:08:12 | 0cdb02ac1d86: Preparing |
| 30-Oct-2019 13:08:12 | f2297bdfc824: Preparing |
| 30-Oct-2019 13:08:12 | 0fbe2bcb1bf9: Preparing |
| 30-Oct-2019 13:08:12 | 59669fcdd5eb: Preparing |
| 30-Oct-2019 13:08:12 | 7f7a065d245a: Preparing |
| 30-Oct-2019 13:08:12 | f96e6b25195f: Preparing |
| 30-Oct-2019 13:08:12 | c56153825175: Preparing |
| 30-Oct-2019 13:08:12 | ae620432889d: Preparing |
| 30-Oct-2019 13:08:12 | a2022691bf95: Preparing |
| 30-Oct-2019 13:08:12 | 59669fcdd5eb: Waiting |
| 30-Oct-2019 13:08:12 | 7f7a065d245a: Waiting |
| 30-Oct-2019 13:08:12 | f96e6b25195f: Waiting |
| 30-Oct-2019 13:08:12 | c56153825175: Waiting |
| 30-Oct-2019 13:08:12 | ae620432889d: Waiting |
| 30-Oct-2019 13:08:12 | a2022691bf95: Waiting |
| 30-Oct-2019 13:08:12 | 0fbe2bcb1bf9: Waiting |
| 30-Oct-2019 13:08:13 | 0cdb02ac1d86: Layer already exists |
| 30-Oct-2019 13:08:13 | f2297bdfc824: Layer already exists |
| 30-Oct-2019 13:08:13 | 4e9f558717e8: Layer already exists |
| 30-Oct-2019 13:08:13 | 11bf6cf717a0: Layer already exists |
| 30-Oct-2019 13:08:13 | 939703534799: Layer already exists |
| 30-Oct-2019 13:08:13 | 0fbe2bcb1bf9: Layer already exists |
| 30-Oct-2019 13:08:13 | 59669fcdd5eb: Layer already exists |
| 30-Oct-2019 13:08:13 | 7f7a065d245a: Layer already exists |
| 30-Oct-2019 13:08:13 | c56153825175: Layer already exists |
| 30-Oct-2019 13:08:13 | f96e6b25195f: Layer already exists |
| 30-Oct-2019 13:08:13 | ae620432889d: Layer already exists |
| 30-Oct-2019 13:08:13 | a2022691bf95: Layer already exists |
| 30-Oct-2019 13:08:13 | browndog_v0.3.0: digest: sha256:9c1b647358d76220364d4c8ba6126711e3b25a8ea82433fec721e1701582b79e size: 2826 |
| 30-Oct-2019 13:08:14 | The push refers to repository [docker.io/clowder/extractors-msc-kidney] |
| 30-Oct-2019 13:08:14 | 4e9f558717e8: Preparing |
| 30-Oct-2019 13:08:14 | 11bf6cf717a0: Preparing |
| 30-Oct-2019 13:08:14 | 939703534799: Preparing |
| 30-Oct-2019 13:08:14 | 0cdb02ac1d86: Preparing |
| 30-Oct-2019 13:08:14 | f2297bdfc824: Preparing |
| 30-Oct-2019 13:08:14 | 0fbe2bcb1bf9: Preparing |
| 30-Oct-2019 13:08:14 | 59669fcdd5eb: Preparing |
| 30-Oct-2019 13:08:14 | 7f7a065d245a: Preparing |
| 30-Oct-2019 13:08:14 | f96e6b25195f: Preparing |
| 30-Oct-2019 13:08:14 | c56153825175: Preparing |
| 30-Oct-2019 13:08:14 | ae620432889d: Preparing |
| 30-Oct-2019 13:08:14 | a2022691bf95: Preparing |
| 30-Oct-2019 13:08:14 | f96e6b25195f: Waiting |
| 30-Oct-2019 13:08:14 | c56153825175: Waiting |
| 30-Oct-2019 13:08:14 | ae620432889d: Waiting |
| 30-Oct-2019 13:08:14 | a2022691bf95: Waiting |
| 30-Oct-2019 13:08:14 | 0fbe2bcb1bf9: Waiting |
| 30-Oct-2019 13:08:14 | 59669fcdd5eb: Waiting |
| 30-Oct-2019 13:08:14 | 7f7a065d245a: Waiting |
| 30-Oct-2019 13:08:14 | 939703534799: Layer already exists |
| 30-Oct-2019 13:08:14 | 4e9f558717e8: Layer already exists |
| 30-Oct-2019 13:08:14 | f2297bdfc824: Layer already exists |
| 30-Oct-2019 13:08:14 | 11bf6cf717a0: Layer already exists |
| 30-Oct-2019 13:08:14 | 0cdb02ac1d86: Layer already exists |
| 30-Oct-2019 13:08:14 | 0fbe2bcb1bf9: Layer already exists |
| 30-Oct-2019 13:08:14 | 7f7a065d245a: Layer already exists |
| 30-Oct-2019 13:08:14 | 59669fcdd5eb: Layer already exists |
| 30-Oct-2019 13:08:14 | f96e6b25195f: Layer already exists |
| 30-Oct-2019 13:08:14 | c56153825175: Layer already exists |
| 30-Oct-2019 13:08:14 | ae620432889d: Layer already exists |
| 30-Oct-2019 13:08:14 | a2022691bf95: Layer already exists |
| 30-Oct-2019 13:08:15 | latest: digest: sha256:9c1b647358d76220364d4c8ba6126711e3b25a8ea82433fec721e1701582b79e size: 2826 |
| 30-Oct-2019 13:08:15 | Untagged: 24169:latest |
| 30-Oct-2019 13:08:15 | Sending build context to Docker daemon 67.07kB |
| 30-Oct-2019 13:08:15 | |
| 30-Oct-2019 13:08:15 | Step 1/11 : FROM clowder/pyclowder:1 |
| 30-Oct-2019 13:08:15 | ---> d1a9e970ed30 |
| 30-Oct-2019 13:08:15 | Step 2/11 : MAINTAINER Yan Zhao <yanzhao3@illinois.edu> |
| 30-Oct-2019 13:08:16 | ---> Running in a09e5b0285db |
| 30-Oct-2019 13:08:17 | Removing intermediate container a09e5b0285db |
| 30-Oct-2019 13:08:17 | ---> 32c601b8037e |
| 30-Oct-2019 13:08:17 | Step 3/11 : ENV RABBITMQ_URI="" RABBITMQ_EXCHANGE="clowder" RABBITMQ_VHOST="%2F" RABBITMQ_QUEUE="ncsa.msc.IsletExtractor" MONGO_URI="" DB_USERNAME="" DB_PASSWORD="" MAIN_SCRIPT="extractor-Islet.py" |
| 30-Oct-2019 13:08:17 | ---> Running in a4c4a9107956 |
| 30-Oct-2019 13:08:17 | Removing intermediate container a4c4a9107956 |
| 30-Oct-2019 13:08:17 | ---> c21ae4a6942d |
| 30-Oct-2019 13:08:17 | Step 4/11 : USER root |
| 30-Oct-2019 13:08:18 | ---> Running in bc07b39b728a |
| 30-Oct-2019 13:08:18 | Removing intermediate container bc07b39b728a |
| 30-Oct-2019 13:08:18 | ---> 032ecb514ab2 |
| 30-Oct-2019 13:08:18 | Step 5/11 : COPY requirements.txt /home/clowder/ |
| 30-Oct-2019 13:08:19 | ---> 8baada361d81 |
| 30-Oct-2019 13:08:19 | Step 6/11 : RUN pip install --upgrade pip |
| 30-Oct-2019 13:08:19 | ---> Running in b104a230c5a3 |
| 30-Oct-2019 13:08:21 | Collecting pip |
| 30-Oct-2019 13:08:21 | Downloading https://files.pythonhosted.org/packages/00/b6/9cfa56b4081ad13874b0c6f96af8ce16cfbc1cb06bedf8e9164ce5551ec1/pip-19.3.1-py2.py3-none-any.whl (1.4MB) |
| 30-Oct-2019 13:08:22 | Installing collected packages: pip |
| 30-Oct-2019 13:08:22 | Found existing installation: pip 8.1.1 |
| 30-Oct-2019 13:08:22 | Not uninstalling pip at /usr/lib/python2.7/dist-packages, outside environment /usr |
| 30-Oct-2019 13:08:22 | Successfully installed pip-19.3.1 |
| 30-Oct-2019 13:08:25 | Removing intermediate container b104a230c5a3 |
| 30-Oct-2019 13:08:25 | ---> 240052f680d8 |
| 30-Oct-2019 13:08:25 | Step 7/11 : RUN pip install -r /home/clowder/requirements.txt |
| 30-Oct-2019 13:08:25 | ---> Running in 20dd07260024 |
| 30-Oct-2019 13:08:27 | DEPRECATION: Python 2.7 will reach the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 won't be maintained after that date. A future version of pip will drop support for Python 2.7. More details about Python 2 support in pip, can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support |
| 30-Oct-2019 13:08:27 | Requirement already satisfied: argparse==1.2.1 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 1)) (1.2.1) |
| 30-Oct-2019 13:08:27 | Collecting openpyxl==1.6.2 |
| 30-Oct-2019 13:08:27 | Downloading https://files.pythonhosted.org/packages/96/53/3782b6cc03500c0949a7ba9dba0c70da95d63d0ed4a04446123987ff983f/openpyxl-1.6.2.tar.gz (199kB) |
| 30-Oct-2019 13:08:28 | Collecting pika==0.9.14 |
| 30-Oct-2019 13:08:28 | Downloading https://files.pythonhosted.org/packages/2b/5b/4c5b6eafc63e0985b926267579a1e2534af70df0a45932f0c23fcc5f1b88/pika-0.9.14.tar.gz (72kB) |
| 30-Oct-2019 13:08:28 | Collecting pymongo==3.2.1 |
| 30-Oct-2019 13:08:28 | Downloading https://files.pythonhosted.org/packages/d7/94/9aa9ddd3e885caa307c0db8af5a1f5d266d3db44e1ae89bd4e14841ab8d0/pymongo-3.2.1.tar.gz (647kB) |
| 30-Oct-2019 13:08:29 | Collecting pytz==2014.3 |
| 30-Oct-2019 13:08:29 | Downloading https://files.pythonhosted.org/packages/e2/8d/af599c0388f46775c6b039d8b9c4acda2f6ef86787312a35291fff4cb7ca/pytz-2014.3.tar.bz2 (158kB) |
| 30-Oct-2019 13:08:30 | Collecting requests==2.2.1 |
| 30-Oct-2019 13:08:30 | Downloading https://files.pythonhosted.org/packages/7d/15/6efffc6aee666e1456852c2bf1d483b46bf971a2d509b35a98fc3eae1c60/requests-2.2.1-py2.py3-none-any.whl (625kB) |
| 30-Oct-2019 13:08:30 | Requirement already satisfied: wsgiref==0.1.2 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 7)) (0.1.2) |
| 30-Oct-2019 13:08:30 | Collecting xlrd==0.9.3 |
| 30-Oct-2019 13:08:30 | Downloading https://files.pythonhosted.org/packages/b1/13/6fbcb55fef0b34c70cb3753741eaafc0e91553a1318653587a7d145caf15/xlrd-0.9.3.tar.gz (178kB) |
| 30-Oct-2019 13:08:30 | Installing collected packages: openpyxl, pika, pymongo, pytz, requests, xlrd |
| 30-Oct-2019 13:08:30 | Running setup.py install for openpyxl: started |
| 30-Oct-2019 13:08:31 | Running setup.py install for openpyxl: finished with status 'done' |
| 30-Oct-2019 13:08:31 | Found existing installation: pika 0.11.0 |
| 30-Oct-2019 13:08:31 | Uninstalling pika-0.11.0: |
| 30-Oct-2019 13:08:31 | Successfully uninstalled pika-0.11.0 |
| 30-Oct-2019 13:08:31 | Running setup.py install for pika: started |
| 30-Oct-2019 13:08:31 | Running setup.py install for pika: finished with status 'done' |
| 30-Oct-2019 13:08:31 | Running setup.py install for pymongo: started |
| 30-Oct-2019 13:08:31 | Running setup.py install for pymongo: finished with status 'done' |
| 30-Oct-2019 13:08:31 | Running setup.py install for pytz: started |
| 30-Oct-2019 13:08:32 | Running setup.py install for pytz: finished with status 'done' |
| 30-Oct-2019 13:08:32 | Found existing installation: requests 2.18.4 |
| 30-Oct-2019 13:08:32 | Uninstalling requests-2.18.4: |
| 30-Oct-2019 13:08:32 | Successfully uninstalled requests-2.18.4 |
| 30-Oct-2019 13:08:32 | Running setup.py install for xlrd: started |
| 30-Oct-2019 13:08:33 | Running setup.py install for xlrd: finished with status 'done' |
| 30-Oct-2019 13:08:33 | Successfully installed openpyxl-1.6.2 pika-0.9.14 pymongo-3.2.1 pytz-2014.3 requests-2.2.1 xlrd-0.9.3 |
| 30-Oct-2019 13:08:35 | Removing intermediate container 20dd07260024 |
| 30-Oct-2019 13:08:35 | ---> 04ac6b47f285 |
| 30-Oct-2019 13:08:35 | Step 8/11 : USER clowder |
| 30-Oct-2019 13:08:35 | ---> Running in 9f8f61fb4324 |
| 30-Oct-2019 13:08:36 | Removing intermediate container 9f8f61fb4324 |
| 30-Oct-2019 13:08:36 | ---> f74f0b021616 |
| 30-Oct-2019 13:08:36 | Step 9/11 : COPY entrypoint.sh *.py *.json /home/clowder/ |
| 30-Oct-2019 13:08:38 | ---> 3329056c4465 |
| 30-Oct-2019 13:08:38 | Step 10/11 : ENTRYPOINT ["/home/clowder/entrypoint.sh"] |
| 30-Oct-2019 13:08:38 | ---> Running in dd0ef67c3d2e |
| 30-Oct-2019 13:08:38 | Removing intermediate container dd0ef67c3d2e |
| 30-Oct-2019 13:08:38 | ---> 05b1d257158a |
| 30-Oct-2019 13:08:38 | Step 11/11 : CMD ["extractor"] |
| 30-Oct-2019 13:08:39 | ---> Running in 57d1709e8532 |
| 30-Oct-2019 13:08:39 | Removing intermediate container 57d1709e8532 |
| 30-Oct-2019 13:08:39 | ---> 26ef71626485 |
| 30-Oct-2019 13:08:39 | Successfully built 26ef71626485 |
| 30-Oct-2019 13:08:39 | Successfully tagged 24169:latest |
| 30-Oct-2019 13:08:39 | The push refers to repository [docker.io/clowder/extractors-msc-islet] |
| 30-Oct-2019 13:08:40 | 6e29138a39fb: Preparing |
| 30-Oct-2019 13:08:40 | c4793ada3d2f: Preparing |
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| 30-Oct-2019 13:08:40 | a2022691bf95: Waiting |
| 30-Oct-2019 13:08:40 | 0cdb02ac1d86: Layer already exists |
| 30-Oct-2019 13:08:40 | f2297bdfc824: Layer already exists |
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| 30-Oct-2019 13:08:41 | 59669fcdd5eb: Layer already exists |
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| 30-Oct-2019 13:08:41 | c56153825175: Layer already exists |
| 30-Oct-2019 13:08:41 | df35a8bda7fa: Pushed |
| 30-Oct-2019 13:08:41 | ae620432889d: Layer already exists |
| 30-Oct-2019 13:08:42 | 6e29138a39fb: Pushed |
| 30-Oct-2019 13:08:42 | a2022691bf95: Layer already exists |
| 30-Oct-2019 13:08:42 | d697cf12f622: Pushed |
| 30-Oct-2019 13:08:43 | c4793ada3d2f: Pushed |
| 30-Oct-2019 13:08:46 | browndog_v0.2.0: digest: sha256:203db2da656547406ce802c2e94dc1f28d4cad5844bad431ebe31a74201cdf09 size: 3031 |
| 30-Oct-2019 13:08:46 | The push refers to repository [docker.io/clowder/extractors-msc-islet] |
| 30-Oct-2019 13:08:46 | 6e29138a39fb: Preparing |
| 30-Oct-2019 13:08:46 | c4793ada3d2f: Preparing |
| 30-Oct-2019 13:08:46 | d697cf12f622: Preparing |
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| 30-Oct-2019 13:08:46 | c56153825175: Preparing |
| 30-Oct-2019 13:08:46 | ae620432889d: Preparing |
| 30-Oct-2019 13:08:46 | a2022691bf95: Preparing |
| 30-Oct-2019 13:08:46 | 7f7a065d245a: Waiting |
| 30-Oct-2019 13:08:46 | f96e6b25195f: Waiting |
| 30-Oct-2019 13:08:46 | c56153825175: Waiting |
| 30-Oct-2019 13:08:46 | ae620432889d: Waiting |
| 30-Oct-2019 13:08:46 | a2022691bf95: Waiting |
| 30-Oct-2019 13:08:46 | f2297bdfc824: Waiting |
| 30-Oct-2019 13:08:46 | 0fbe2bcb1bf9: Waiting |
| 30-Oct-2019 13:08:46 | 59669fcdd5eb: Waiting |
| 30-Oct-2019 13:08:46 | d697cf12f622: Layer already exists |
| 30-Oct-2019 13:08:46 | df35a8bda7fa: Layer already exists |
| 30-Oct-2019 13:08:46 | 0cdb02ac1d86: Layer already exists |
| 30-Oct-2019 13:08:46 | 6e29138a39fb: Layer already exists |
| 30-Oct-2019 13:08:46 | c4793ada3d2f: Layer already exists |
| 30-Oct-2019 13:08:46 | 59669fcdd5eb: Layer already exists |
| 30-Oct-2019 13:08:46 | f2297bdfc824: Layer already exists |
| 30-Oct-2019 13:08:46 | 0fbe2bcb1bf9: Layer already exists |
| 30-Oct-2019 13:08:46 | 7f7a065d245a: Layer already exists |
| 30-Oct-2019 13:08:47 | ae620432889d: Layer already exists |
| 30-Oct-2019 13:08:47 | c56153825175: Layer already exists |
| 30-Oct-2019 13:08:47 | a2022691bf95: Layer already exists |
| 30-Oct-2019 13:08:50 | f96e6b25195f: Layer already exists |
| 30-Oct-2019 13:08:51 | browndog_v0.3.0: digest: sha256:203db2da656547406ce802c2e94dc1f28d4cad5844bad431ebe31a74201cdf09 size: 3031 |
| 30-Oct-2019 13:08:51 | The push refers to repository [docker.io/clowder/extractors-msc-islet] |
| 30-Oct-2019 13:08:51 | 6e29138a39fb: Preparing |
| 30-Oct-2019 13:08:51 | c4793ada3d2f: Preparing |
| 30-Oct-2019 13:08:51 | d697cf12f622: Preparing |
| 30-Oct-2019 13:08:51 | df35a8bda7fa: Preparing |
| 30-Oct-2019 13:08:51 | 0cdb02ac1d86: Preparing |
| 30-Oct-2019 13:08:51 | f2297bdfc824: Preparing |
| 30-Oct-2019 13:08:51 | 0fbe2bcb1bf9: Preparing |
| 30-Oct-2019 13:08:51 | 59669fcdd5eb: Preparing |
| 30-Oct-2019 13:08:51 | 7f7a065d245a: Preparing |
| 30-Oct-2019 13:08:51 | f96e6b25195f: Preparing |
| 30-Oct-2019 13:08:51 | c56153825175: Preparing |
| 30-Oct-2019 13:08:51 | ae620432889d: Preparing |
| 30-Oct-2019 13:08:51 | a2022691bf95: Preparing |
| 30-Oct-2019 13:08:51 | 59669fcdd5eb: Waiting |
| 30-Oct-2019 13:08:51 | 7f7a065d245a: Waiting |
| 30-Oct-2019 13:08:51 | f96e6b25195f: Waiting |
| 30-Oct-2019 13:08:51 | c56153825175: Waiting |
| 30-Oct-2019 13:08:51 | ae620432889d: Waiting |
| 30-Oct-2019 13:08:51 | a2022691bf95: Waiting |
| 30-Oct-2019 13:08:51 | f2297bdfc824: Waiting |
| 30-Oct-2019 13:08:51 | 0fbe2bcb1bf9: Waiting |
| 30-Oct-2019 13:08:52 | df35a8bda7fa: Layer already exists |
| 30-Oct-2019 13:08:52 | d697cf12f622: Layer already exists |
| 30-Oct-2019 13:08:52 | c4793ada3d2f: Layer already exists |
| 30-Oct-2019 13:08:52 | 6e29138a39fb: Layer already exists |
| 30-Oct-2019 13:08:52 | 0cdb02ac1d86: Layer already exists |
| 30-Oct-2019 13:08:52 | 7f7a065d245a: Layer already exists |
| 30-Oct-2019 13:08:52 | 59669fcdd5eb: Layer already exists |
| 30-Oct-2019 13:08:52 | f2297bdfc824: Layer already exists |
| 30-Oct-2019 13:08:52 | f96e6b25195f: Layer already exists |
| 30-Oct-2019 13:08:52 | 0fbe2bcb1bf9: Layer already exists |
| 30-Oct-2019 13:08:52 | c56153825175: Layer already exists |
| 30-Oct-2019 13:08:52 | ae620432889d: Layer already exists |
| 30-Oct-2019 13:08:52 | a2022691bf95: Layer already exists |
| 30-Oct-2019 13:08:52 | latest: digest: sha256:203db2da656547406ce802c2e94dc1f28d4cad5844bad431ebe31a74201cdf09 size: 3031 |
| 30-Oct-2019 13:08:52 | Untagged: 24169:latest |
| 30-Oct-2019 13:08:52 | Sending build context to Docker daemon 66.05kB |
| 30-Oct-2019 13:08:52 | |
| 30-Oct-2019 13:08:53 | Step 1/11 : FROM clowder/pyclowder:1 |
| 30-Oct-2019 13:08:53 | ---> d1a9e970ed30 |
| 30-Oct-2019 13:08:53 | Step 2/11 : MAINTAINER Yan Zhao <yanzhao3@illinois.edu> |
| 30-Oct-2019 13:08:53 | ---> Using cache |
| 30-Oct-2019 13:08:53 | ---> 32c601b8037e |
| 30-Oct-2019 13:08:53 | Step 3/11 : ENV RABBITMQ_URI="" RABBITMQ_EXCHANGE="clowder" RABBITMQ_VHOST="%2F" RABBITMQ_QUEUE="ncsa.msc.ChemCBCExtractor" MONGO_URI="" DB_USERNAME="" DB_PASSWORD="" MAIN_SCRIPT="extractor-Chem.py" |
| 30-Oct-2019 13:08:53 | ---> Running in 93ba7cce564e |
| 30-Oct-2019 13:08:53 | Removing intermediate container 93ba7cce564e |
| 30-Oct-2019 13:08:53 | ---> 1eeba75093d6 |
| 30-Oct-2019 13:08:53 | Step 4/11 : USER root |
| 30-Oct-2019 13:08:53 | ---> Running in c37a6e343627 |
| 30-Oct-2019 13:08:54 | Removing intermediate container c37a6e343627 |
| 30-Oct-2019 13:08:54 | ---> e8a8fa379c58 |
| 30-Oct-2019 13:08:54 | Step 5/11 : COPY requirements.txt /home/clowder/ |
| 30-Oct-2019 13:08:55 | ---> 6d57b8d9eaf8 |
| 30-Oct-2019 13:08:55 | Step 6/11 : RUN pip install --upgrade pip |
| 30-Oct-2019 13:08:55 | ---> Running in 22a5f6d711ad |
| 30-Oct-2019 13:08:58 | Collecting pip |
| 30-Oct-2019 13:08:58 | Downloading https://files.pythonhosted.org/packages/00/b6/9cfa56b4081ad13874b0c6f96af8ce16cfbc1cb06bedf8e9164ce5551ec1/pip-19.3.1-py2.py3-none-any.whl (1.4MB) |
| 30-Oct-2019 13:08:58 | Installing collected packages: pip |
| 30-Oct-2019 13:08:58 | Found existing installation: pip 8.1.1 |
| 30-Oct-2019 13:08:58 | Not uninstalling pip at /usr/lib/python2.7/dist-packages, outside environment /usr |
| 30-Oct-2019 13:08:59 | Successfully installed pip-19.3.1 |
| 30-Oct-2019 13:09:01 | Removing intermediate container 22a5f6d711ad |
| 30-Oct-2019 13:09:01 | ---> daf1696a559d |
| 30-Oct-2019 13:09:01 | Step 7/11 : RUN pip install -r /home/clowder/requirements.txt |
| 30-Oct-2019 13:09:01 | ---> Running in e9fd7c1476f5 |
| 30-Oct-2019 13:09:03 | DEPRECATION: Python 2.7 will reach the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 won't be maintained after that date. A future version of pip will drop support for Python 2.7. More details about Python 2 support in pip, can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support |
| 30-Oct-2019 13:09:03 | Requirement already satisfied: argparse==1.2.1 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 1)) (1.2.1) |
| 30-Oct-2019 13:09:03 | Collecting openpyxl==1.6.2 |
| 30-Oct-2019 13:09:03 | Downloading https://files.pythonhosted.org/packages/96/53/3782b6cc03500c0949a7ba9dba0c70da95d63d0ed4a04446123987ff983f/openpyxl-1.6.2.tar.gz (199kB) |
| 30-Oct-2019 13:09:04 | Collecting pika==0.9.14 |
| 30-Oct-2019 13:09:04 | Downloading https://files.pythonhosted.org/packages/2b/5b/4c5b6eafc63e0985b926267579a1e2534af70df0a45932f0c23fcc5f1b88/pika-0.9.14.tar.gz (72kB) |
| 30-Oct-2019 13:09:05 | Collecting pymongo==3.2.1 |
| 30-Oct-2019 13:09:05 | Downloading https://files.pythonhosted.org/packages/d7/94/9aa9ddd3e885caa307c0db8af5a1f5d266d3db44e1ae89bd4e14841ab8d0/pymongo-3.2.1.tar.gz (647kB) |
| 30-Oct-2019 13:09:06 | Collecting pytz==2014.3 |
| 30-Oct-2019 13:09:06 | Downloading https://files.pythonhosted.org/packages/e2/8d/af599c0388f46775c6b039d8b9c4acda2f6ef86787312a35291fff4cb7ca/pytz-2014.3.tar.bz2 (158kB) |
| 30-Oct-2019 13:09:07 | Collecting requests==2.2.1 |
| 30-Oct-2019 13:09:07 | Downloading https://files.pythonhosted.org/packages/7d/15/6efffc6aee666e1456852c2bf1d483b46bf971a2d509b35a98fc3eae1c60/requests-2.2.1-py2.py3-none-any.whl (625kB) |
| 30-Oct-2019 13:09:07 | Requirement already satisfied: wsgiref==0.1.2 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 7)) (0.1.2) |
| 30-Oct-2019 13:09:07 | Collecting xlrd==0.9.3 |
| 30-Oct-2019 13:09:07 | Downloading https://files.pythonhosted.org/packages/b1/13/6fbcb55fef0b34c70cb3753741eaafc0e91553a1318653587a7d145caf15/xlrd-0.9.3.tar.gz (178kB) |
| 30-Oct-2019 13:09:08 | Installing collected packages: openpyxl, pika, pymongo, pytz, requests, xlrd |
| 30-Oct-2019 13:09:08 | Running setup.py install for openpyxl: started |
| 30-Oct-2019 13:09:08 | Running setup.py install for openpyxl: finished with status 'done' |
| 30-Oct-2019 13:09:08 | Found existing installation: pika 0.11.0 |
| 30-Oct-2019 13:09:08 | Uninstalling pika-0.11.0: |
| 30-Oct-2019 13:09:08 | Successfully uninstalled pika-0.11.0 |
| 30-Oct-2019 13:09:08 | Running setup.py install for pika: started |
| 30-Oct-2019 13:09:08 | Running setup.py install for pika: finished with status 'done' |
| 30-Oct-2019 13:09:08 | Running setup.py install for pymongo: started |
| 30-Oct-2019 13:09:09 | Running setup.py install for pymongo: finished with status 'done' |
| 30-Oct-2019 13:09:09 | Running setup.py install for pytz: started |
| 30-Oct-2019 13:09:09 | Running setup.py install for pytz: finished with status 'done' |
| 30-Oct-2019 13:09:09 | Found existing installation: requests 2.18.4 |
| 30-Oct-2019 13:09:09 | Uninstalling requests-2.18.4: |
| 30-Oct-2019 13:09:09 | Successfully uninstalled requests-2.18.4 |
| 30-Oct-2019 13:09:10 | Running setup.py install for xlrd: started |
| 30-Oct-2019 13:09:10 | Running setup.py install for xlrd: finished with status 'done' |
| 30-Oct-2019 13:09:10 | Successfully installed openpyxl-1.6.2 pika-0.9.14 pymongo-3.2.1 pytz-2014.3 requests-2.2.1 xlrd-0.9.3 |
| 30-Oct-2019 13:09:13 | Removing intermediate container e9fd7c1476f5 |
| 30-Oct-2019 13:09:13 | ---> 407f76a92477 |
| 30-Oct-2019 13:09:13 | Step 8/11 : USER clowder |
| 30-Oct-2019 13:09:14 | ---> Running in fbd498a6b4d2 |
| 30-Oct-2019 13:09:14 | Removing intermediate container fbd498a6b4d2 |
| 30-Oct-2019 13:09:14 | ---> 788abf79dae2 |
| 30-Oct-2019 13:09:14 | Step 9/11 : COPY entrypoint.sh *.py *.json /home/clowder/ |
| 30-Oct-2019 13:09:15 | ---> a7d9220a8408 |
| 30-Oct-2019 13:09:15 | Step 10/11 : ENTRYPOINT ["/home/clowder/entrypoint.sh"] |
| 30-Oct-2019 13:09:15 | ---> Running in b36dd9503fd3 |
| 30-Oct-2019 13:09:16 | Removing intermediate container b36dd9503fd3 |
| 30-Oct-2019 13:09:16 | ---> 31c4f0ebf6b9 |
| 30-Oct-2019 13:09:16 | Step 11/11 : CMD ["extractor"] |
| 30-Oct-2019 13:09:16 | ---> Running in a40c46d11ac5 |
| 30-Oct-2019 13:09:17 | Removing intermediate container a40c46d11ac5 |
| 30-Oct-2019 13:09:17 | ---> 1299f62209ba |
| 30-Oct-2019 13:09:17 | Successfully built 1299f62209ba |
| 30-Oct-2019 13:09:18 | Successfully tagged 24169:latest |
| 30-Oct-2019 13:09:18 | The push refers to repository [docker.io/clowder/extractors-msc-chemcbc] |
| 30-Oct-2019 13:09:18 | 77e579ebc1ed: Preparing |
| 30-Oct-2019 13:09:18 | b5ea620b9fee: Preparing |
| 30-Oct-2019 13:09:18 | 871d39024ec0: Preparing |
| 30-Oct-2019 13:09:18 | 43a3a96d7f2d: Preparing |
| 30-Oct-2019 13:09:18 | 0cdb02ac1d86: Preparing |
| 30-Oct-2019 13:09:18 | f2297bdfc824: Preparing |
| 30-Oct-2019 13:09:18 | 0fbe2bcb1bf9: Preparing |
| 30-Oct-2019 13:09:18 | 59669fcdd5eb: Preparing |
| 30-Oct-2019 13:09:18 | 7f7a065d245a: Preparing |
| 30-Oct-2019 13:09:18 | f96e6b25195f: Preparing |
| 30-Oct-2019 13:09:18 | c56153825175: Preparing |
| 30-Oct-2019 13:09:18 | ae620432889d: Preparing |
| 30-Oct-2019 13:09:18 | a2022691bf95: Preparing |
| 30-Oct-2019 13:09:18 | f2297bdfc824: Waiting |
| 30-Oct-2019 13:09:18 | c56153825175: Waiting |
| 30-Oct-2019 13:09:18 | ae620432889d: Waiting |
| 30-Oct-2019 13:09:18 | 0fbe2bcb1bf9: Waiting |
| 30-Oct-2019 13:09:18 | a2022691bf95: Waiting |
| 30-Oct-2019 13:09:18 | 59669fcdd5eb: Waiting |
| 30-Oct-2019 13:09:18 | 7f7a065d245a: Waiting |
| 30-Oct-2019 13:09:18 | f96e6b25195f: Waiting |
| 30-Oct-2019 13:09:18 | 0cdb02ac1d86: Layer already exists |
| 30-Oct-2019 13:09:19 | f2297bdfc824: Layer already exists |
| 30-Oct-2019 13:09:19 | 0fbe2bcb1bf9: Layer already exists |
| 30-Oct-2019 13:09:19 | 59669fcdd5eb: Layer already exists |
| 30-Oct-2019 13:09:19 | 7f7a065d245a: Layer already exists |
| 30-Oct-2019 13:09:19 | f96e6b25195f: Layer already exists |
| 30-Oct-2019 13:09:20 | c56153825175: Layer already exists |
| 30-Oct-2019 13:09:20 | ae620432889d: Layer already exists |
| 30-Oct-2019 13:09:20 | 77e579ebc1ed: Pushed |
| 30-Oct-2019 13:09:20 | a2022691bf95: Layer already exists |
| 30-Oct-2019 13:09:20 | 43a3a96d7f2d: Pushed |
| 30-Oct-2019 13:09:21 | b5ea620b9fee: Pushed |
| 30-Oct-2019 13:09:21 | 871d39024ec0: Pushed |
| 30-Oct-2019 13:09:24 | browndog_v0.2.0: digest: sha256:b4c89d04bbc38899239915b4322dab353e5cce32e5ba0e8792f6e3befac99b72 size: 3031 |
| 30-Oct-2019 13:09:24 | The push refers to repository [docker.io/clowder/extractors-msc-chemcbc] |
| 30-Oct-2019 13:09:24 | 77e579ebc1ed: Preparing |
| 30-Oct-2019 13:09:24 | b5ea620b9fee: Preparing |
| 30-Oct-2019 13:09:24 | 871d39024ec0: Preparing |
| 30-Oct-2019 13:09:24 | 43a3a96d7f2d: Preparing |
| 30-Oct-2019 13:09:24 | 0cdb02ac1d86: Preparing |
| 30-Oct-2019 13:09:24 | f2297bdfc824: Preparing |
| 30-Oct-2019 13:09:24 | 0fbe2bcb1bf9: Preparing |
| 30-Oct-2019 13:09:24 | 59669fcdd5eb: Preparing |
| 30-Oct-2019 13:09:24 | 7f7a065d245a: Preparing |
| 30-Oct-2019 13:09:24 | f96e6b25195f: Preparing |
| 30-Oct-2019 13:09:24 | c56153825175: Preparing |
| 30-Oct-2019 13:09:24 | ae620432889d: Preparing |
| 30-Oct-2019 13:09:24 | a2022691bf95: Preparing |
| 30-Oct-2019 13:09:24 | f2297bdfc824: Waiting |
| 30-Oct-2019 13:09:24 | ae620432889d: Waiting |
| 30-Oct-2019 13:09:24 | 59669fcdd5eb: Waiting |
| 30-Oct-2019 13:09:24 | 0fbe2bcb1bf9: Waiting |
| 30-Oct-2019 13:09:24 | 7f7a065d245a: Waiting |
| 30-Oct-2019 13:09:24 | c56153825175: Waiting |
| 30-Oct-2019 13:09:24 | a2022691bf95: Waiting |
| 30-Oct-2019 13:09:24 | f96e6b25195f: Waiting |
| 30-Oct-2019 13:09:25 | 871d39024ec0: Layer already exists |
| 30-Oct-2019 13:09:25 | 77e579ebc1ed: Layer already exists |
| 30-Oct-2019 13:09:25 | 43a3a96d7f2d: Layer already exists |
| 30-Oct-2019 13:09:25 | b5ea620b9fee: Layer already exists |
| 30-Oct-2019 13:09:25 | 0cdb02ac1d86: Layer already exists |
| 30-Oct-2019 13:09:25 | 0fbe2bcb1bf9: Layer already exists |
| 30-Oct-2019 13:09:25 | f2297bdfc824: Layer already exists |
| 30-Oct-2019 13:09:25 | 7f7a065d245a: Layer already exists |
| 30-Oct-2019 13:09:25 | 59669fcdd5eb: Layer already exists |
| 30-Oct-2019 13:09:25 | f96e6b25195f: Layer already exists |
| 30-Oct-2019 13:09:25 | c56153825175: Layer already exists |
| 30-Oct-2019 13:09:25 | ae620432889d: Layer already exists |
| 30-Oct-2019 13:09:25 | a2022691bf95: Layer already exists |
| 30-Oct-2019 13:09:25 | browndog_v0.3.0: digest: sha256:b4c89d04bbc38899239915b4322dab353e5cce32e5ba0e8792f6e3befac99b72 size: 3031 |
| 30-Oct-2019 13:09:26 | The push refers to repository [docker.io/clowder/extractors-msc-chemcbc] |
| 30-Oct-2019 13:09:26 | 77e579ebc1ed: Preparing |
| 30-Oct-2019 13:09:26 | b5ea620b9fee: Preparing |
| 30-Oct-2019 13:09:26 | 871d39024ec0: Preparing |
| 30-Oct-2019 13:09:26 | 43a3a96d7f2d: Preparing |
| 30-Oct-2019 13:09:26 | 0cdb02ac1d86: Preparing |
| 30-Oct-2019 13:09:26 | f2297bdfc824: Preparing |
| 30-Oct-2019 13:09:26 | 0fbe2bcb1bf9: Preparing |
| 30-Oct-2019 13:09:26 | 59669fcdd5eb: Preparing |
| 30-Oct-2019 13:09:26 | 7f7a065d245a: Preparing |
| 30-Oct-2019 13:09:26 | f96e6b25195f: Preparing |
| 30-Oct-2019 13:09:26 | c56153825175: Preparing |
| 30-Oct-2019 13:09:26 | ae620432889d: Preparing |
| 30-Oct-2019 13:09:26 | a2022691bf95: Preparing |
| 30-Oct-2019 13:09:26 | 7f7a065d245a: Waiting |
| 30-Oct-2019 13:09:26 | f2297bdfc824: Waiting |
| 30-Oct-2019 13:09:26 | f96e6b25195f: Waiting |
| 30-Oct-2019 13:09:26 | 0fbe2bcb1bf9: Waiting |
| 30-Oct-2019 13:09:26 | c56153825175: Waiting |
| 30-Oct-2019 13:09:26 | ae620432889d: Waiting |
| 30-Oct-2019 13:09:26 | 59669fcdd5eb: Waiting |
| 30-Oct-2019 13:09:26 | a2022691bf95: Waiting |
| 30-Oct-2019 13:09:26 | 871d39024ec0: Layer already exists |
| 30-Oct-2019 13:09:26 | 77e579ebc1ed: Layer already exists |
| 30-Oct-2019 13:09:26 | b5ea620b9fee: Layer already exists |
| 30-Oct-2019 13:09:26 | 0cdb02ac1d86: Layer already exists |
| 30-Oct-2019 13:09:26 | f2297bdfc824: Layer already exists |
| 30-Oct-2019 13:09:26 | 59669fcdd5eb: Layer already exists |
| 30-Oct-2019 13:09:26 | f96e6b25195f: Layer already exists |
| 30-Oct-2019 13:09:26 | 0fbe2bcb1bf9: Layer already exists |
| 30-Oct-2019 13:09:26 | c56153825175: Layer already exists |
| 30-Oct-2019 13:09:27 | ae620432889d: Layer already exists |
| 30-Oct-2019 13:09:27 | a2022691bf95: Layer already exists |
| 30-Oct-2019 13:09:27 | 7f7a065d245a: Layer already exists |
| 30-Oct-2019 13:09:27 | 43a3a96d7f2d: Layer already exists |
| 30-Oct-2019 13:09:28 | latest: digest: sha256:b4c89d04bbc38899239915b4322dab353e5cce32e5ba0e8792f6e3befac99b72 size: 3031 |
| 30-Oct-2019 13:09:28 | Untagged: 24169:latest |
| 30-Oct-2019 13:09:28 | Sending build context to Docker daemon 198.1kB |
| 30-Oct-2019 13:09:28 | |
| 30-Oct-2019 13:09:28 | Step 1/11 : FROM clowder/pyclowder:1 |
| 30-Oct-2019 13:09:28 | ---> d1a9e970ed30 |
| 30-Oct-2019 13:09:28 | Step 2/11 : MAINTAINER Yan Zhao <yanzhao3@illinois.edu> |
| 30-Oct-2019 13:09:28 | ---> Using cache |
| 30-Oct-2019 13:09:28 | ---> 32c601b8037e |
| 30-Oct-2019 13:09:28 | Step 3/11 : ENV RABBITMQ_URI="" RABBITMQ_EXCHANGE="clowder" RABBITMQ_VHOST="%2F" RABBITMQ_QUEUE="ncsa.msc.MonitorExtractor" MONGO_URI="" DB_USERNAME="" DB_PASSWORD="" MAIN_SCRIPT="extractor-Monitor.py" |
| 30-Oct-2019 13:09:29 | ---> Running in 752f15f2f3cc |
| 30-Oct-2019 13:09:29 | Removing intermediate container 752f15f2f3cc |
| 30-Oct-2019 13:09:29 | ---> 398b6f5db2f2 |
| 30-Oct-2019 13:09:29 | Step 4/11 : USER root |
| 30-Oct-2019 13:09:30 | ---> Running in 17ce5bad31fa |
| 30-Oct-2019 13:09:30 | Removing intermediate container 17ce5bad31fa |
| 30-Oct-2019 13:09:30 | ---> 0a410455b157 |
| 30-Oct-2019 13:09:30 | Step 5/11 : COPY requirements.txt /home/clowder/ |
| 30-Oct-2019 13:09:31 | ---> 15e93e93a1f0 |
| 30-Oct-2019 13:09:31 | Step 6/11 : RUN pip install --upgrade pip |
| 30-Oct-2019 13:09:32 | ---> Running in 3a1a632ee3d7 |
| 30-Oct-2019 13:09:34 | Collecting pip |
| 30-Oct-2019 13:09:34 | Downloading https://files.pythonhosted.org/packages/00/b6/9cfa56b4081ad13874b0c6f96af8ce16cfbc1cb06bedf8e9164ce5551ec1/pip-19.3.1-py2.py3-none-any.whl (1.4MB) |
| 30-Oct-2019 13:09:34 | Installing collected packages: pip |
| 30-Oct-2019 13:09:34 | Found existing installation: pip 8.1.1 |
| 30-Oct-2019 13:09:34 | Not uninstalling pip at /usr/lib/python2.7/dist-packages, outside environment /usr |
| 30-Oct-2019 13:09:35 | Successfully installed pip-19.3.1 |
| 30-Oct-2019 13:09:37 | Removing intermediate container 3a1a632ee3d7 |
| 30-Oct-2019 13:09:37 | ---> bfb60b34f72a |
| 30-Oct-2019 13:09:37 | Step 7/11 : RUN pip install -r /home/clowder/requirements.txt |
| 30-Oct-2019 13:09:38 | ---> Running in 3736068cad29 |
| 30-Oct-2019 13:09:40 | DEPRECATION: Python 2.7 will reach the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 won't be maintained after that date. A future version of pip will drop support for Python 2.7. More details about Python 2 support in pip, can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support |
| 30-Oct-2019 13:09:40 | Requirement already satisfied: argparse==1.2.1 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 1)) (1.2.1) |
| 30-Oct-2019 13:09:40 | Collecting openpyxl==1.6.2 |
| 30-Oct-2019 13:09:40 | Downloading https://files.pythonhosted.org/packages/96/53/3782b6cc03500c0949a7ba9dba0c70da95d63d0ed4a04446123987ff983f/openpyxl-1.6.2.tar.gz (199kB) |
| 30-Oct-2019 13:09:40 | Collecting pika==0.9.14 |
| 30-Oct-2019 13:09:40 | Downloading https://files.pythonhosted.org/packages/2b/5b/4c5b6eafc63e0985b926267579a1e2534af70df0a45932f0c23fcc5f1b88/pika-0.9.14.tar.gz (72kB) |
| 30-Oct-2019 13:09:41 | Collecting pymongo==3.2.1 |
| 30-Oct-2019 13:09:41 | Downloading https://files.pythonhosted.org/packages/d7/94/9aa9ddd3e885caa307c0db8af5a1f5d266d3db44e1ae89bd4e14841ab8d0/pymongo-3.2.1.tar.gz (647kB) |
| 30-Oct-2019 13:09:42 | Collecting pytz==2014.3 |
| 30-Oct-2019 13:09:42 | Downloading https://files.pythonhosted.org/packages/e2/8d/af599c0388f46775c6b039d8b9c4acda2f6ef86787312a35291fff4cb7ca/pytz-2014.3.tar.bz2 (158kB) |
| 30-Oct-2019 13:09:43 | Collecting requests==2.2.1 |
| 30-Oct-2019 13:09:43 | Downloading https://files.pythonhosted.org/packages/7d/15/6efffc6aee666e1456852c2bf1d483b46bf971a2d509b35a98fc3eae1c60/requests-2.2.1-py2.py3-none-any.whl (625kB) |
| 30-Oct-2019 13:09:43 | Requirement already satisfied: wsgiref==0.1.2 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 7)) (0.1.2) |
| 30-Oct-2019 13:09:43 | Collecting xlrd==0.9.3 |
| 30-Oct-2019 13:09:43 | Downloading https://files.pythonhosted.org/packages/b1/13/6fbcb55fef0b34c70cb3753741eaafc0e91553a1318653587a7d145caf15/xlrd-0.9.3.tar.gz (178kB) |
| 30-Oct-2019 13:09:43 | Installing collected packages: openpyxl, pika, pymongo, pytz, requests, xlrd |
| 30-Oct-2019 13:09:43 | Running setup.py install for openpyxl: started |
| 30-Oct-2019 13:09:44 | Running setup.py install for openpyxl: finished with status 'done' |
| 30-Oct-2019 13:09:44 | Found existing installation: pika 0.11.0 |
| 30-Oct-2019 13:09:44 | Uninstalling pika-0.11.0: |
| 30-Oct-2019 13:09:44 | Successfully uninstalled pika-0.11.0 |
| 30-Oct-2019 13:09:44 | Running setup.py install for pika: started |
| 30-Oct-2019 13:09:44 | Running setup.py install for pika: finished with status 'done' |
| 30-Oct-2019 13:09:44 | Running setup.py install for pymongo: started |
| 30-Oct-2019 13:09:44 | Running setup.py install for pymongo: finished with status 'done' |
| 30-Oct-2019 13:09:44 | Running setup.py install for pytz: started |
| 30-Oct-2019 13:09:45 | Running setup.py install for pytz: finished with status 'done' |
| 30-Oct-2019 13:09:45 | Found existing installation: requests 2.18.4 |
| 30-Oct-2019 13:09:45 | Uninstalling requests-2.18.4: |
| 30-Oct-2019 13:09:45 | Successfully uninstalled requests-2.18.4 |
| 30-Oct-2019 13:09:45 | Running setup.py install for xlrd: started |
| 30-Oct-2019 13:09:46 | Running setup.py install for xlrd: finished with status 'done' |
| 30-Oct-2019 13:09:46 | Successfully installed openpyxl-1.6.2 pika-0.9.14 pymongo-3.2.1 pytz-2014.3 requests-2.2.1 xlrd-0.9.3 |
| 30-Oct-2019 13:09:48 | Removing intermediate container 3736068cad29 |
| 30-Oct-2019 13:09:48 | ---> c754b7ae8195 |
| 30-Oct-2019 13:09:48 | Step 8/11 : USER clowder |
| 30-Oct-2019 13:09:49 | ---> Running in 44989eeb4771 |
| 30-Oct-2019 13:09:50 | Removing intermediate container 44989eeb4771 |
| 30-Oct-2019 13:09:50 | ---> dc27acf343e4 |
| 30-Oct-2019 13:09:50 | Step 9/11 : COPY entrypoint.sh *.py *.json /home/clowder/ |
| 30-Oct-2019 13:09:51 | ---> 9000ce40cd0f |
| 30-Oct-2019 13:09:51 | Step 10/11 : ENTRYPOINT ["/home/clowder/entrypoint.sh"] |
| 30-Oct-2019 13:09:51 | ---> Running in f0e1a34d38f1 |
| 30-Oct-2019 13:09:52 | Removing intermediate container f0e1a34d38f1 |
| 30-Oct-2019 13:09:52 | ---> 5232133a95a0 |
| 30-Oct-2019 13:09:52 | Step 11/11 : CMD ["extractor"] |
| 30-Oct-2019 13:09:52 | ---> Running in 2a80e1e00fa4 |
| 30-Oct-2019 13:09:52 | Removing intermediate container 2a80e1e00fa4 |
| 30-Oct-2019 13:09:52 | ---> 5d8582e94f5f |
| 30-Oct-2019 13:09:52 | Successfully built 5d8582e94f5f |
| 30-Oct-2019 13:09:52 | Successfully tagged 24169:latest |
| 30-Oct-2019 13:09:53 | The push refers to repository [docker.io/clowder/extractors-msc-monitor] |
| 30-Oct-2019 13:09:53 | fca1ee144aeb: Preparing |
| 30-Oct-2019 13:09:53 | 3bf76b316fec: Preparing |
| 30-Oct-2019 13:09:53 | 0aa66b177f1a: Preparing |
| 30-Oct-2019 13:09:53 | 4dd656f557f4: Preparing |
| 30-Oct-2019 13:09:53 | 0cdb02ac1d86: Preparing |
| 30-Oct-2019 13:09:53 | f2297bdfc824: Preparing |
| 30-Oct-2019 13:09:53 | 0fbe2bcb1bf9: Preparing |
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| 30-Oct-2019 13:09:53 | c56153825175: Preparing |
| 30-Oct-2019 13:09:53 | ae620432889d: Preparing |
| 30-Oct-2019 13:09:53 | a2022691bf95: Preparing |
| 30-Oct-2019 13:09:53 | 59669fcdd5eb: Waiting |
| 30-Oct-2019 13:09:53 | 7f7a065d245a: Waiting |
| 30-Oct-2019 13:09:53 | f96e6b25195f: Waiting |
| 30-Oct-2019 13:09:53 | c56153825175: Waiting |
| 30-Oct-2019 13:09:53 | a2022691bf95: Waiting |
| 30-Oct-2019 13:09:53 | ae620432889d: Waiting |
| 30-Oct-2019 13:09:53 | f2297bdfc824: Waiting |
| 30-Oct-2019 13:09:53 | 0fbe2bcb1bf9: Waiting |
| 30-Oct-2019 13:09:53 | 0cdb02ac1d86: Layer already exists |
| 30-Oct-2019 13:09:53 | f2297bdfc824: Layer already exists |
| 30-Oct-2019 13:09:53 | 0fbe2bcb1bf9: Layer already exists |
| 30-Oct-2019 13:09:54 | 59669fcdd5eb: Layer already exists |
| 30-Oct-2019 13:09:54 | 7f7a065d245a: Layer already exists |
| 30-Oct-2019 13:09:54 | f96e6b25195f: Layer already exists |
| 30-Oct-2019 13:09:55 | c56153825175: Layer already exists |
| 30-Oct-2019 13:09:55 | 4dd656f557f4: Pushed |
| 30-Oct-2019 13:09:55 | fca1ee144aeb: Pushed |
| 30-Oct-2019 13:09:55 | ae620432889d: Layer already exists |
| 30-Oct-2019 13:09:55 | a2022691bf95: Layer already exists |
| 30-Oct-2019 13:09:56 | 0aa66b177f1a: Pushed |
| 30-Oct-2019 13:09:56 | 3bf76b316fec: Pushed |
| 30-Oct-2019 13:09:59 | browndog_v0.2.0: digest: sha256:adaa1ad86a6849180de327ce386d7d13180f546208e2b265f3383abcf645f1dc size: 3031 |
| 30-Oct-2019 13:09:59 | The push refers to repository [docker.io/clowder/extractors-msc-monitor] |
| 30-Oct-2019 13:09:59 | fca1ee144aeb: Preparing |
| 30-Oct-2019 13:09:59 | 3bf76b316fec: Preparing |
| 30-Oct-2019 13:09:59 | 0aa66b177f1a: Preparing |
| 30-Oct-2019 13:09:59 | 4dd656f557f4: Preparing |
| 30-Oct-2019 13:09:59 | 0cdb02ac1d86: Preparing |
| 30-Oct-2019 13:09:59 | f2297bdfc824: Preparing |
| 30-Oct-2019 13:09:59 | 0fbe2bcb1bf9: Preparing |
| 30-Oct-2019 13:09:59 | 59669fcdd5eb: Preparing |
| 30-Oct-2019 13:09:59 | 7f7a065d245a: Preparing |
| 30-Oct-2019 13:09:59 | f96e6b25195f: Preparing |
| 30-Oct-2019 13:09:59 | c56153825175: Preparing |
| 30-Oct-2019 13:09:59 | ae620432889d: Preparing |
| 30-Oct-2019 13:09:59 | a2022691bf95: Preparing |
| 30-Oct-2019 13:09:59 | 0fbe2bcb1bf9: Waiting |
| 30-Oct-2019 13:09:59 | 59669fcdd5eb: Waiting |
| 30-Oct-2019 13:09:59 | 7f7a065d245a: Waiting |
| 30-Oct-2019 13:09:59 | f2297bdfc824: Waiting |
| 30-Oct-2019 13:09:59 | f96e6b25195f: Waiting |
| 30-Oct-2019 13:09:59 | ae620432889d: Waiting |
| 30-Oct-2019 13:09:59 | c56153825175: Waiting |
| 30-Oct-2019 13:09:59 | a2022691bf95: Waiting |
| 30-Oct-2019 13:09:59 | 4dd656f557f4: Layer already exists |
| 30-Oct-2019 13:09:59 | 0cdb02ac1d86: Layer already exists |
| 30-Oct-2019 13:09:59 | 0aa66b177f1a: Layer already exists |
| 30-Oct-2019 13:09:59 | 3bf76b316fec: Layer already exists |
| 30-Oct-2019 13:09:59 | fca1ee144aeb: Layer already exists |
| 30-Oct-2019 13:10:00 | f2297bdfc824: Layer already exists |
| 30-Oct-2019 13:10:00 | 0fbe2bcb1bf9: Layer already exists |
| 30-Oct-2019 13:10:00 | 7f7a065d245a: Layer already exists |
| 30-Oct-2019 13:10:00 | f96e6b25195f: Layer already exists |
| 30-Oct-2019 13:10:00 | 59669fcdd5eb: Layer already exists |
| 30-Oct-2019 13:10:00 | c56153825175: Layer already exists |
| 30-Oct-2019 13:10:00 | a2022691bf95: Layer already exists |
| 30-Oct-2019 13:10:00 | ae620432889d: Layer already exists |
| 30-Oct-2019 13:10:00 | browndog_v0.3.0: digest: sha256:adaa1ad86a6849180de327ce386d7d13180f546208e2b265f3383abcf645f1dc size: 3031 |
| 30-Oct-2019 13:10:00 | The push refers to repository [docker.io/clowder/extractors-msc-monitor] |
| 30-Oct-2019 13:10:01 | fca1ee144aeb: Preparing |
| 30-Oct-2019 13:10:01 | 3bf76b316fec: Preparing |
| 30-Oct-2019 13:10:01 | 0aa66b177f1a: Preparing |
| 30-Oct-2019 13:10:01 | 4dd656f557f4: Preparing |
| 30-Oct-2019 13:10:01 | 0cdb02ac1d86: Preparing |
| 30-Oct-2019 13:10:01 | f2297bdfc824: Preparing |
| 30-Oct-2019 13:10:01 | 0fbe2bcb1bf9: Preparing |
| 30-Oct-2019 13:10:01 | 59669fcdd5eb: Preparing |
| 30-Oct-2019 13:10:01 | 7f7a065d245a: Preparing |
| 30-Oct-2019 13:10:01 | f96e6b25195f: Preparing |
| 30-Oct-2019 13:10:01 | c56153825175: Preparing |
| 30-Oct-2019 13:10:01 | ae620432889d: Preparing |
| 30-Oct-2019 13:10:01 | a2022691bf95: Preparing |
| 30-Oct-2019 13:10:01 | f2297bdfc824: Waiting |
| 30-Oct-2019 13:10:01 | 0fbe2bcb1bf9: Waiting |
| 30-Oct-2019 13:10:01 | 59669fcdd5eb: Waiting |
| 30-Oct-2019 13:10:01 | 7f7a065d245a: Waiting |
| 30-Oct-2019 13:10:01 | f96e6b25195f: Waiting |
| 30-Oct-2019 13:10:01 | c56153825175: Waiting |
| 30-Oct-2019 13:10:01 | ae620432889d: Waiting |
| 30-Oct-2019 13:10:01 | a2022691bf95: Waiting |
| 30-Oct-2019 13:10:01 | fca1ee144aeb: Layer already exists |
| 30-Oct-2019 13:10:01 | 0cdb02ac1d86: Layer already exists |
| 30-Oct-2019 13:10:01 | 3bf76b316fec: Layer already exists |
| 30-Oct-2019 13:10:01 | 0aa66b177f1a: Layer already exists |
| 30-Oct-2019 13:10:01 | 4dd656f557f4: Layer already exists |
| 30-Oct-2019 13:10:01 | f2297bdfc824: Layer already exists |
| 30-Oct-2019 13:10:01 | 0fbe2bcb1bf9: Layer already exists |
| 30-Oct-2019 13:10:01 | 59669fcdd5eb: Layer already exists |
| 30-Oct-2019 13:10:01 | 7f7a065d245a: Layer already exists |
| 30-Oct-2019 13:10:01 | f96e6b25195f: Layer already exists |
| 30-Oct-2019 13:10:01 | c56153825175: Layer already exists |
| 30-Oct-2019 13:10:01 | ae620432889d: Layer already exists |
| 30-Oct-2019 13:10:01 | a2022691bf95: Layer already exists |
| 30-Oct-2019 13:10:02 | latest: digest: sha256:adaa1ad86a6849180de327ce386d7d13180f546208e2b265f3383abcf645f1dc size: 3031 |
| 30-Oct-2019 13:10:02 | Untagged: 24169:latest |
| 30-Oct-2019 13:10:02 | Sending build context to Docker daemon 12.1MB |
| 30-Oct-2019 13:10:02 | |
| 30-Oct-2019 13:10:02 | Step 1/11 : FROM clowder/pyclowder:1 |
| 30-Oct-2019 13:10:02 | ---> d1a9e970ed30 |
| 30-Oct-2019 13:10:02 | Step 2/11 : MAINTAINER Yan Zhao <yanzhao3@illinois.edu> |
| 30-Oct-2019 13:10:02 | ---> Using cache |
| 30-Oct-2019 13:10:02 | ---> 32c601b8037e |
| 30-Oct-2019 13:10:02 | Step 3/11 : ENV RABBITMQ_URI="" RABBITMQ_EXCHANGE="clowder" RABBITMQ_VHOST="%2F" RABBITMQ_QUEUE="ncsa.msc.PhenotypeExtractor" MONGO_URI="" DB_USERNAME="" DB_PASSWORD="" MAIN_SCRIPT="extractor-Phenotype.py" |
| 30-Oct-2019 13:10:02 | ---> Running in 76d3da50adf2 |
| 30-Oct-2019 13:10:04 | Removing intermediate container 76d3da50adf2 |
| 30-Oct-2019 13:10:04 | ---> 00b637c50b8b |
| 30-Oct-2019 13:10:04 | Step 4/11 : USER root |
| 30-Oct-2019 13:10:04 | ---> Running in 503a0b4fdcd8 |
| 30-Oct-2019 13:10:05 | Removing intermediate container 503a0b4fdcd8 |
| 30-Oct-2019 13:10:05 | ---> 09bde4f39762 |
| 30-Oct-2019 13:10:05 | Step 5/11 : COPY requirements.txt /home/clowder/ |
| 30-Oct-2019 13:10:05 | ---> d4b268b716a1 |
| 30-Oct-2019 13:10:05 | Step 6/11 : RUN pip install --upgrade pip |
| 30-Oct-2019 13:10:06 | ---> Running in 7494d7a9f400 |
| 30-Oct-2019 13:10:08 | Collecting pip |
| 30-Oct-2019 13:10:08 | Downloading https://files.pythonhosted.org/packages/00/b6/9cfa56b4081ad13874b0c6f96af8ce16cfbc1cb06bedf8e9164ce5551ec1/pip-19.3.1-py2.py3-none-any.whl (1.4MB) |
| 30-Oct-2019 13:10:08 | Installing collected packages: pip |
| 30-Oct-2019 13:10:08 | Found existing installation: pip 8.1.1 |
| 30-Oct-2019 13:10:08 | Not uninstalling pip at /usr/lib/python2.7/dist-packages, outside environment /usr |
| 30-Oct-2019 13:10:09 | Successfully installed pip-19.3.1 |
| 30-Oct-2019 13:10:11 | Removing intermediate container 7494d7a9f400 |
| 30-Oct-2019 13:10:11 | ---> 6ad55a49d68b |
| 30-Oct-2019 13:10:11 | Step 7/11 : RUN pip install -r /home/clowder/requirements.txt |
| 30-Oct-2019 13:10:12 | ---> Running in 77205f4b629c |
| 30-Oct-2019 13:10:14 | DEPRECATION: Python 2.7 will reach the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 won't be maintained after that date. A future version of pip will drop support for Python 2.7. More details about Python 2 support in pip, can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support |
| 30-Oct-2019 13:10:14 | Requirement already satisfied: argparse==1.2.1 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 1)) (1.2.1) |
| 30-Oct-2019 13:10:14 | Collecting openpyxl==1.6.2 |
| 30-Oct-2019 13:10:14 | Downloading https://files.pythonhosted.org/packages/96/53/3782b6cc03500c0949a7ba9dba0c70da95d63d0ed4a04446123987ff983f/openpyxl-1.6.2.tar.gz (199kB) |
| 30-Oct-2019 13:10:14 | Collecting pika==0.9.14 |
| 30-Oct-2019 13:10:14 | Downloading https://files.pythonhosted.org/packages/2b/5b/4c5b6eafc63e0985b926267579a1e2534af70df0a45932f0c23fcc5f1b88/pika-0.9.14.tar.gz (72kB) |
| 30-Oct-2019 13:10:15 | Collecting pymongo==3.2.1 |
| 30-Oct-2019 13:10:15 | Downloading https://files.pythonhosted.org/packages/d7/94/9aa9ddd3e885caa307c0db8af5a1f5d266d3db44e1ae89bd4e14841ab8d0/pymongo-3.2.1.tar.gz (647kB) |
| 30-Oct-2019 13:10:16 | Collecting pytz==2014.3 |
| 30-Oct-2019 13:10:16 | Downloading https://files.pythonhosted.org/packages/e2/8d/af599c0388f46775c6b039d8b9c4acda2f6ef86787312a35291fff4cb7ca/pytz-2014.3.tar.bz2 (158kB) |
| 30-Oct-2019 13:10:17 | Collecting requests==2.2.1 |
| 30-Oct-2019 13:10:17 | Downloading https://files.pythonhosted.org/packages/7d/15/6efffc6aee666e1456852c2bf1d483b46bf971a2d509b35a98fc3eae1c60/requests-2.2.1-py2.py3-none-any.whl (625kB) |
| 30-Oct-2019 13:10:17 | Requirement already satisfied: wsgiref==0.1.2 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 7)) (0.1.2) |
| 30-Oct-2019 13:10:17 | Collecting xlrd==0.9.3 |
| 30-Oct-2019 13:10:17 | Downloading https://files.pythonhosted.org/packages/b1/13/6fbcb55fef0b34c70cb3753741eaafc0e91553a1318653587a7d145caf15/xlrd-0.9.3.tar.gz (178kB) |
| 30-Oct-2019 13:10:18 | Installing collected packages: openpyxl, pika, pymongo, pytz, requests, xlrd |
| 30-Oct-2019 13:10:18 | Running setup.py install for openpyxl: started |
| 30-Oct-2019 13:10:18 | Running setup.py install for openpyxl: finished with status 'done' |
| 30-Oct-2019 13:10:18 | Found existing installation: pika 0.11.0 |
| 30-Oct-2019 13:10:18 | Uninstalling pika-0.11.0: |
| 30-Oct-2019 13:10:18 | Successfully uninstalled pika-0.11.0 |
| 30-Oct-2019 13:10:18 | Running setup.py install for pika: started |
| 30-Oct-2019 13:10:18 | Running setup.py install for pika: finished with status 'done' |
| 30-Oct-2019 13:10:18 | Running setup.py install for pymongo: started |
| 30-Oct-2019 13:10:19 | Running setup.py install for pymongo: finished with status 'done' |
| 30-Oct-2019 13:10:19 | Running setup.py install for pytz: started |
| 30-Oct-2019 13:10:19 | Running setup.py install for pytz: finished with status 'done' |
| 30-Oct-2019 13:10:19 | Found existing installation: requests 2.18.4 |
| 30-Oct-2019 13:10:19 | Uninstalling requests-2.18.4: |
| 30-Oct-2019 13:10:19 | Successfully uninstalled requests-2.18.4 |
| 30-Oct-2019 13:10:20 | Running setup.py install for xlrd: started |
| 30-Oct-2019 13:10:20 | Running setup.py install for xlrd: finished with status 'done' |
| 30-Oct-2019 13:10:20 | Successfully installed openpyxl-1.6.2 pika-0.9.14 pymongo-3.2.1 pytz-2014.3 requests-2.2.1 xlrd-0.9.3 |
| 30-Oct-2019 13:10:22 | Removing intermediate container 77205f4b629c |
| 30-Oct-2019 13:10:22 | ---> b23a889fb5ef |
| 30-Oct-2019 13:10:22 | Step 8/11 : USER clowder |
| 30-Oct-2019 13:10:23 | ---> Running in 72fde3ae624f |
| 30-Oct-2019 13:10:24 | Removing intermediate container 72fde3ae624f |
| 30-Oct-2019 13:10:24 | ---> 0081c1deacc3 |
| 30-Oct-2019 13:10:24 | Step 9/11 : COPY entrypoint.sh *.py *.json /home/clowder/ |
| 30-Oct-2019 13:10:25 | ---> 112a90c770ae |
| 30-Oct-2019 13:10:25 | Step 10/11 : ENTRYPOINT ["/home/clowder/entrypoint.sh"] |
| 30-Oct-2019 13:10:25 | ---> Running in 85454020831a |
| 30-Oct-2019 13:10:26 | Removing intermediate container 85454020831a |
| 30-Oct-2019 13:10:26 | ---> 01cc47b2af0a |
| 30-Oct-2019 13:10:26 | Step 11/11 : CMD ["extractor"] |
| 30-Oct-2019 13:10:26 | ---> Running in 4cbf371a2c7a |
| 30-Oct-2019 13:10:27 | Removing intermediate container 4cbf371a2c7a |
| 30-Oct-2019 13:10:27 | ---> 8f717ec8fe03 |
| 30-Oct-2019 13:10:27 | Successfully built 8f717ec8fe03 |
| 30-Oct-2019 13:10:27 | Successfully tagged 24169:latest |
| 30-Oct-2019 13:10:27 | The push refers to repository [docker.io/clowder/extractors-msc-phenotype] |
| 30-Oct-2019 13:10:27 | c06e7f4e1121: Preparing |
| 30-Oct-2019 13:10:27 | 9c68c2118994: Preparing |
| 30-Oct-2019 13:10:27 | 15265e61b4b1: Preparing |
| 30-Oct-2019 13:10:27 | 577b2565da47: Preparing |
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| 30-Oct-2019 13:10:27 | a2022691bf95: Preparing |
| 30-Oct-2019 13:10:27 | f2297bdfc824: Waiting |
| 30-Oct-2019 13:10:27 | 0fbe2bcb1bf9: Waiting |
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| 30-Oct-2019 13:10:27 | ae620432889d: Waiting |
| 30-Oct-2019 13:10:27 | a2022691bf95: Waiting |
| 30-Oct-2019 13:10:27 | c56153825175: Waiting |
| 30-Oct-2019 13:10:28 | 0cdb02ac1d86: Layer already exists |
| 30-Oct-2019 13:10:28 | f2297bdfc824: Layer already exists |
| 30-Oct-2019 13:10:28 | 0fbe2bcb1bf9: Layer already exists |
| 30-Oct-2019 13:10:28 | 59669fcdd5eb: Layer already exists |
| 30-Oct-2019 13:10:29 | 7f7a065d245a: Layer already exists |
| 30-Oct-2019 13:10:29 | f96e6b25195f: Layer already exists |
| 30-Oct-2019 13:10:29 | c56153825175: Layer already exists |
| 30-Oct-2019 13:10:29 | ae620432889d: Layer already exists |
| 30-Oct-2019 13:10:29 | a2022691bf95: Layer already exists |
| 30-Oct-2019 13:10:30 | c06e7f4e1121: Pushed |
| 30-Oct-2019 13:10:30 | 9c68c2118994: Pushed |
| 30-Oct-2019 13:10:31 | 15265e61b4b1: Pushed |
| 30-Oct-2019 13:10:31 | 577b2565da47: Pushed |
| 30-Oct-2019 13:10:34 | browndog_v0.2.0: digest: sha256:4e07e5826a6ed23371705ccb9dac773c8d6b606fcb128aa73ed3b2a9185b71a3 size: 3031 |
| 30-Oct-2019 13:10:34 | The push refers to repository [docker.io/clowder/extractors-msc-phenotype] |
| 30-Oct-2019 13:10:35 | c06e7f4e1121: Preparing |
| 30-Oct-2019 13:10:35 | 9c68c2118994: Preparing |
| 30-Oct-2019 13:10:35 | 15265e61b4b1: Preparing |
| 30-Oct-2019 13:10:35 | 577b2565da47: Preparing |
| 30-Oct-2019 13:10:35 | 0cdb02ac1d86: Preparing |
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| 30-Oct-2019 13:10:35 | ae620432889d: Preparing |
| 30-Oct-2019 13:10:35 | a2022691bf95: Preparing |
| 30-Oct-2019 13:10:35 | f96e6b25195f: Waiting |
| 30-Oct-2019 13:10:35 | f2297bdfc824: Waiting |
| 30-Oct-2019 13:10:35 | 0fbe2bcb1bf9: Waiting |
| 30-Oct-2019 13:10:35 | c56153825175: Waiting |
| 30-Oct-2019 13:10:35 | ae620432889d: Waiting |
| 30-Oct-2019 13:10:35 | 59669fcdd5eb: Waiting |
| 30-Oct-2019 13:10:35 | 7f7a065d245a: Waiting |
| 30-Oct-2019 13:10:35 | a2022691bf95: Waiting |
| 30-Oct-2019 13:10:35 | c06e7f4e1121: Layer already exists |
| 30-Oct-2019 13:10:35 | 0cdb02ac1d86: Layer already exists |
| 30-Oct-2019 13:10:35 | 15265e61b4b1: Layer already exists |
| 30-Oct-2019 13:10:35 | 9c68c2118994: Layer already exists |
| 30-Oct-2019 13:10:35 | 577b2565da47: Layer already exists |
| 30-Oct-2019 13:10:35 | f2297bdfc824: Layer already exists |
| 30-Oct-2019 13:10:35 | 59669fcdd5eb: Layer already exists |
| 30-Oct-2019 13:10:35 | 0fbe2bcb1bf9: Layer already exists |
| 30-Oct-2019 13:10:35 | 7f7a065d245a: Layer already exists |
| 30-Oct-2019 13:10:35 | f96e6b25195f: Layer already exists |
| 30-Oct-2019 13:10:35 | c56153825175: Layer already exists |
| 30-Oct-2019 13:10:35 | ae620432889d: Layer already exists |
| 30-Oct-2019 13:10:35 | a2022691bf95: Layer already exists |
| 30-Oct-2019 13:10:36 | browndog_v0.3.0: digest: sha256:4e07e5826a6ed23371705ccb9dac773c8d6b606fcb128aa73ed3b2a9185b71a3 size: 3031 |
| 30-Oct-2019 13:10:36 | The push refers to repository [docker.io/clowder/extractors-msc-phenotype] |
| 30-Oct-2019 13:10:36 | c06e7f4e1121: Preparing |
| 30-Oct-2019 13:10:36 | 9c68c2118994: Preparing |
| 30-Oct-2019 13:10:36 | 15265e61b4b1: Preparing |
| 30-Oct-2019 13:10:36 | 577b2565da47: Preparing |
| 30-Oct-2019 13:10:36 | 0cdb02ac1d86: Preparing |
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| 30-Oct-2019 13:10:36 | 0fbe2bcb1bf9: Preparing |
| 30-Oct-2019 13:10:36 | 59669fcdd5eb: Preparing |
| 30-Oct-2019 13:10:36 | 7f7a065d245a: Preparing |
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| 30-Oct-2019 13:10:36 | ae620432889d: Preparing |
| 30-Oct-2019 13:10:36 | a2022691bf95: Preparing |
| 30-Oct-2019 13:10:36 | f2297bdfc824: Waiting |
| 30-Oct-2019 13:10:36 | 0fbe2bcb1bf9: Waiting |
| 30-Oct-2019 13:10:36 | 59669fcdd5eb: Waiting |
| 30-Oct-2019 13:10:36 | 7f7a065d245a: Waiting |
| 30-Oct-2019 13:10:36 | f96e6b25195f: Waiting |
| 30-Oct-2019 13:10:36 | c56153825175: Waiting |
| 30-Oct-2019 13:10:36 | ae620432889d: Waiting |
| 30-Oct-2019 13:10:36 | a2022691bf95: Waiting |
| 30-Oct-2019 13:10:36 | 0cdb02ac1d86: Layer already exists |
| 30-Oct-2019 13:10:36 | 577b2565da47: Layer already exists |
| 30-Oct-2019 13:10:36 | 15265e61b4b1: Layer already exists |
| 30-Oct-2019 13:10:36 | c06e7f4e1121: Layer already exists |
| 30-Oct-2019 13:10:36 | 9c68c2118994: Layer already exists |
| 30-Oct-2019 13:10:37 | 0fbe2bcb1bf9: Layer already exists |
| 30-Oct-2019 13:10:37 | 7f7a065d245a: Layer already exists |
| 30-Oct-2019 13:10:37 | f2297bdfc824: Layer already exists |
| 30-Oct-2019 13:10:37 | f96e6b25195f: Layer already exists |
| 30-Oct-2019 13:10:37 | 59669fcdd5eb: Layer already exists |
| 30-Oct-2019 13:10:37 | c56153825175: Layer already exists |
| 30-Oct-2019 13:10:37 | ae620432889d: Layer already exists |
| 30-Oct-2019 13:10:37 | a2022691bf95: Layer already exists |
| 30-Oct-2019 13:10:37 | latest: digest: sha256:4e07e5826a6ed23371705ccb9dac773c8d6b606fcb128aa73ed3b2a9185b71a3 size: 3031 |
| 30-Oct-2019 13:10:37 | Untagged: 24169:latest |
| 30-Oct-2019 13:10:37 | Finished task 'docker build' with result: Success |
| 30-Oct-2019 13:10:37 | Running post build plugin 'Docker Container Cleanup' |
| 30-Oct-2019 13:10:37 | Running post build plugin 'NCover Results Collector' |
| 30-Oct-2019 13:10:37 | Running post build plugin 'Clover Results Collector' |
| 30-Oct-2019 13:10:37 | Running post build plugin 'npm Cache Cleanup' |
| 30-Oct-2019 13:10:37 | Running post build plugin 'Artifact Copier' |
| 30-Oct-2019 13:10:37 | Finalising the build... |
| 30-Oct-2019 13:10:37 | Stopping timer. |
| 30-Oct-2019 13:10:37 | Build CATS-MSC-JOB1-43 completed. |
| 30-Oct-2019 13:10:37 | Running on server: post build plugin 'NCover Results Collector' |
| 30-Oct-2019 13:10:37 | Running on server: post build plugin 'Build Hanging Detection Configuration' |
| 30-Oct-2019 13:10:37 | Running on server: post build plugin 'Clover Delta Calculator' |
| 30-Oct-2019 13:10:37 | Running on server: post build plugin 'Maven Dependencies Postprocessor' |
| 30-Oct-2019 13:10:37 | All post build plugins have finished |
| 30-Oct-2019 13:10:37 | Generating build results summary... |
| 30-Oct-2019 13:10:37 | Saving build results to disk... |
| 30-Oct-2019 13:10:37 | Logging substituted variables... |
| 30-Oct-2019 13:10:37 | Indexing build results... |
| 30-Oct-2019 13:10:37 | Finished building CATS-MSC-JOB1-43. |