pyclowder

• 

  Rob Kooper 02 Aug 2019 0463436a000eda6fa7eb0599340254f3c08e25c3 m

  update version number

  • CHANGELOG.md (version 0463436a000eda6fa7eb0599340254f3c08e25c3) (diffs)
  • setup.py (version 0463436a000eda6fa7eb0599340254f3c08e25c3) (diffs)
• 

  Rob Kooper 01 Aug 2019 9662678f2751198102dce49cc977d170aec4c615 m

  fkx build error due to change key

  • sample-extractors/simple-r-extractor/Dockerfile (version 9662678f2751198102dce49cc977d170aec4c615) (diffs)
• 

  Kajetan Haas 31 Jul 2019 fe7e52bf9768198bef9aa05540efdda6656b0e67 m

  Update sample-extractors/wordcount-simple-r-extractor/extractor_info.json

  • sample-extractors/wordcount-simple-r-extractor/extractor_info.json (version fe7e52bf9768198bef9aa05540efdda6656b0e67) (diffs)
• 

  Kajetan Haas 31 Jul 2019 c72ad39bc2ed672c3e141513b8a885b5086ed045 m

  Update sample-extractors/wordcount-simple-extractor/extractor_info.json

  • sample-extractors/wordcount-simple-extractor/extractor_info.json (version c72ad39bc2ed672c3e141513b8a885b5086ed045) (diffs)
• 

  Kajetan Haas 31 Jul 2019 e3c093191ebf6a4186d8cd38f159e96d52ed13b7 m

  Update sample-extractors/wordcount/extractor_info.json

  • sample-extractors/wordcount/extractor_info.json (version e3c093191ebf6a4186d8cd38f159e96d52ed13b7) (diffs)
• 

  Kajetan Haas 31 Jul 2019 484ddd833db82cd417901cfd4b862ff5dfea6844 m

  Update sample-extractors/echo/extractor_info.json

  • sample-extractors/echo/extractor_info.json (version 484ddd833db82cd417901cfd4b862ff5dfea6844) (diffs)
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  Rob Kooper 03 Apr 2019 f511e3b72573598bb9eca3b12d724d584d5b3442 m

  Update CHANGELOG

  • CHANGELOG.md (version f511e3b72573598bb9eca3b12d724d584d5b3442) (diffs)
• 

  Rob Kooper 03 Apr 2019 7b99a9580d4dbca33377320c562561f658d56208 m

  release 2.2.0

  • release.sh (version 7b99a9580d4dbca33377320c562561f658d56208) (diffs)
  • setup.py (version 7b99a9580d4dbca33377320c562561f658d56208) (diffs)
• 

  Rob Kooper 01 Apr 2019 8c97747b1d0882a0524eb5885c4f82791a45c25d m

  cleanup
  - bumped some requirements (solves github complaining about security issues)
  - fixes to be python 3.x compatible
  - fix some functions not using key to post
  - general cleanup

  • contrib/monitor/monitor.py (version 8c97747b1d0882a0524eb5885c4f82791a45c25d) (diffs)
  • pyclowder/client.py (version 8c97747b1d0882a0524eb5885c4f82791a45c25d) (diffs)
  • pyclowder/collections.py (version 8c97747b1d0882a0524eb5885c4f82791a45c25d) (diffs)
  • pyclowder/connectors.py (version 8c97747b1d0882a0524eb5885c4f82791a45c25d) (diffs)
  • pyclowder/datasets.py (version 8c97747b1d0882a0524eb5885c4f82791a45c25d) (diffs)
  • pyclowder/extractors.py (version 8c97747b1d0882a0524eb5885c4f82791a45c25d) (diffs)
  • pyclowder/files.py (version 8c97747b1d0882a0524eb5885c4f82791a45c25d) (diffs)
  • pyclowder/geostreams.py (version 8c97747b1d0882a0524eb5885c4f82791a45c25d) (diffs)
  • pyclowder/utils.py (version 8c97747b1d0882a0524eb5885c4f82791a45c25d) (diffs)
  • requirements.txt (version 8c97747b1d0882a0524eb5885c4f82791a45c25d) (diffs)
  • sample-extractors/binary-preview/binary_extractor.py (version 8c97747b1d0882a0524eb5885c4f82791a45c25d) (diffs)
  • sample-extractors/echo/echo.py (version 8c97747b1d0882a0524eb5885c4f82791a45c25d) (diffs)
  • sample-extractors/simple-r-extractor/README.md (version 8c97747b1d0882a0524eb5885c4f82791a45c25d) (diffs)
  • sample-extractors/wordcount-simple-extractor/wordcount.py (version 8c97747b1d0882a0524eb5885c4f82791a45c25d) (diffs)
  • sample-extractors/wordcount/wordcount.py (version 8c97747b1d0882a0524eb5885c4f82791a45c25d) (diffs)
  • setup.py (version 8c97747b1d0882a0524eb5885c4f82791a45c25d) (diffs)
• 

  Rob Kooper 29 Mar 2019 87a6605ea74a9ed9ddf685d4a0cd25cf27390699 m

  Update CHANGELOG.md

  • CHANGELOG.md (version 87a6605ea74a9ed9ddf685d4a0cd25cf27390699) (diffs)
• 

  Rob Kooper 29 Mar 2019 764d9e0e516bfc4aba00f9e03b402858665c62af m

  Merge pull request #81 in CATS/pyclowder2 from bugfix/CATSPYC-18-filename-with-special-characters-result-in-error to develop
  * commit '10d7afd00c6df71111be4f0179330e0a4abf183b':
    simplify code
    cleanup whitespace
    fix error parsing json body
• 

  Rob Kooper 29 Mar 2019 10d7afd00c6df71111be4f0179330e0a4abf183b m

  simplify code

  • pyclowder/connectors.py (version 10d7afd00c6df71111be4f0179330e0a4abf183b) (diffs)
• 

  Chris Schnaufer 26 Feb 2019 10debfa0397ca1231d58a0a7f93b887919d02b82 m

  Merge pull request #84 in CATS/pyclowder2 from Improvement/CATS-975-add_links_to_local_files to develop
  * commit 'cc47ffa2700b15d796baaaaa2adef3e666d77465':
    Added making a temp folder for cases where multiple instance are running on the same machine
    Added linking to local files when the local file name doesn't match expected file name
• 

  Rob Kooper 25 Feb 2019 66fc7701b866370e2dd10c82ebabd80de793b232 m

  Merge pull request #69 in CATS/pyclowder2 from feature/CATS-799-fire-extractors-registered-with-space to develop
  * commit 'e7f8caf15e25901ccc0df28cb1e34852c9436141':
    send heartbeat monitor heartbeats remove extractor_id default rabbitmq_queue to be extractor_info.name make sure there is a queue name monitor now groups by extractor_info['name']/extractor_info['version'] only remove file in case of exception update extractor message counts every 60 seconds Move logic from StandardError to Exception python3 docker containers
• 

  Rob Kooper 25 Feb 2019 e7f8caf15e25901ccc0df28cb1e34852c9436141 m

  send heartbeat monitor heartbeats remove extractor_id default rabbitmq_queue to be extractor_info.name make sure there is a queue name monitor now groups by extractor_info['name']/extractor_info['version'] only remove file in case of exception update extractor message counts every 60 seconds Move logic from StandardError to Exception python3 docker containers

  • contrib/monitor/Dockerfile (version e7f8caf15e25901ccc0df28cb1e34852c9436141) (diffs)
  • contrib/monitor/monitor.py (version e7f8caf15e25901ccc0df28cb1e34852c9436141) (diffs)
  • docker.sh (version e7f8caf15e25901ccc0df28cb1e34852c9436141) (diffs)
  • pyclowder/collections.py (version e7f8caf15e25901ccc0df28cb1e34852c9436141) (diffs)
  • pyclowder/connectors.py (version e7f8caf15e25901ccc0df28cb1e34852c9436141) (diffs)
  • pyclowder/extractors.py (version e7f8caf15e25901ccc0df28cb1e34852c9436141) (diffs)
  • release.sh (version e7f8caf15e25901ccc0df28cb1e34852c9436141) (diffs)
  • sample-extractors/binary-preview/README.rst (version e7f8caf15e25901ccc0df28cb1e34852c9436141) (diffs)
  • sample-extractors/binary-preview/binary_extractor.py (version e7f8caf15e25901ccc0df28cb1e34852c9436141) (diffs)
  • sample-extractors/echo/Dockerfile (version e7f8caf15e25901ccc0df28cb1e34852c9436141) (diffs)
  • sample-extractors/echo/echo.py (version e7f8caf15e25901ccc0df28cb1e34852c9436141) (diffs)
• 

  Chris Schnaufer 21 Feb 2019 cc47ffa2700b15d796baaaaa2adef3e666d77465 m

  Added making a temp folder for cases where multiple instance are running on the same machine

  • pyclowder/connectors.py (version cc47ffa2700b15d796baaaaa2adef3e666d77465) (diffs)
• 

  Chris Schnaufer 19 Feb 2019 0a0f246f3f50715cf3902cb97c9fe75b1f907d35 m

  Added linking to local files when the local file name doesn't match expected file name

  • pyclowder/connectors.py (version 0a0f246f3f50715cf3902cb97c9fe75b1f907d35) (diffs)
• 

  Bing Zhang 13 Feb 2019 b77a2828ad16022935a16ea7a4529447021da9aa m

  add real email addresses inside the email notification

  • pyclowder/connectors.py (version b77a2828ad16022935a16ea7a4529447021da9aa) (diffs)
• 

  Rob Kooper 11 Feb 2019 1073a5ec3679ffac71f6464fbe613390549cd57b m

  Merge pull request #78 in CATS/pyclowder2 from r-extractor to develop
  * commit '2ebddbb5b9dba23d259c62b1322a8c91f7ac8451':
    use launcher script
    Add missing Dockerfile example
    Created generic SimpleExtractor class used by both the R and Python implementations. initial example of r extractor wordcount example
• 

  Bing Zhang 05 Feb 2019 14ce71b049364cf2c50d7ed7a76e4bb6734783f4 m

  email notification when extraction is done

  • CHANGELOG.md (version 14ce71b049364cf2c50d7ed7a76e4bb6734783f4) (diffs)
  • Dockerfile (version 14ce71b049364cf2c50d7ed7a76e4bb6734783f4) (diffs)
  • notifications.json (version 14ce71b049364cf2c50d7ed7a76e4bb6734783f4) (diffs)
  • pyclowder/connectors.py (version 14ce71b049364cf2c50d7ed7a76e4bb6734783f4) (diffs)
• 

  Rob Kooper 10 Jan 2019 f1cc099fe0435295973018e37a5d9cf143423b2f m

  cleanup whitespace

  • pyclowder/connectors.py (version f1cc099fe0435295973018e37a5d9cf143423b2f) (diffs)
• 

  Rob Kooper 10 Jan 2019 816ac5a05be4a88f4cd329a7cd4328a0f614b2e1 m

  fix error parsing json body

  • pyclowder/connectors.py (version 816ac5a05be4a88f4cd329a7cd4328a0f614b2e1) (diffs)
• 

  Rob Kooper 04 Dec 2018 2ebddbb5b9dba23d259c62b1322a8c91f7ac8451 m

  use launcher script
  Original version use python module to call R code. This would lock all python threads resulting in missing heartbeats.

  • sample-extractors/simple-r-extractor/Dockerfile (version 2ebddbb5b9dba23d259c62b1322a8c91f7ac8451) (diffs)
  • sample-extractors/simple-r-extractor/launcher.R (version 2ebddbb5b9dba23d259c62b1322a8c91f7ac8451) (diffs)
  • sample-extractors/simple-r-extractor/r_extractor.py (version 2ebddbb5b9dba23d259c62b1322a8c91f7ac8451) (diffs)
• 

  Rob Kooper 04 Dec 2018 2735f79a73c4c9b60395f33361fee762a3340137 m

  Merge remote-tracking branch 'origin/develop' into r-extractor
• 

  Rob Kooper 28 Nov 2018 44876afd0619dcebe1dd256c323d795a8ab36a84 m

  Don't register by default

  • Dockerfile (version 44876afd0619dcebe1dd256c323d795a8ab36a84) (diffs)
  • pyclowder/extractors.py (version 44876afd0619dcebe1dd256c323d795a8ab36a84) (diffs)
• 

  Rob Kooper 09 Nov 2018 4e7f7ca2955df55907b73507b66fde5f9b8ff3a7 m

  Add missing Dockerfile example

  • sample-extractors/simple-r-extractor/README.md (version 4e7f7ca2955df55907b73507b66fde5f9b8ff3a7) (diffs)
• 

  Rob Kooper 08 Nov 2018 0751f96e1b435ff6534467e481b76a2d80c65fd2 m

  Created generic SimpleExtractor class used by both the R and Python implementations. initial example of r extractor wordcount example

  • docker.sh (version 0751f96e1b435ff6534467e481b76a2d80c65fd2) (diffs)
  • pyclowder/extractors.py (version 0751f96e1b435ff6534467e481b76a2d80c65fd2) (diffs)
  • release.sh (version 0751f96e1b435ff6534467e481b76a2d80c65fd2) (diffs)
  • sample-extractors/simple-extractor/Dockerfile (version 0751f96e1b435ff6534467e481b76a2d80c65fd2) (diffs)
  • sample-extractors/simple-extractor/README.md (version 0751f96e1b435ff6534467e481b76a2d80c65fd2) (diffs)
  • sample-extractors/simple-extractor/simple_extractor.py (version 0751f96e1b435ff6534467e481b76a2d80c65fd2) (diffs)
  • sample-extractors/simple-r-extractor/Dockerfile (version 0751f96e1b435ff6534467e481b76a2d80c65fd2) (diffs)
  • sample-extractors/simple-r-extractor/README.md (version 0751f96e1b435ff6534467e481b76a2d80c65fd2) (diffs)
  • sample-extractors/simple-r-extractor/r_extractor.py (version 0751f96e1b435ff6534467e481b76a2d80c65fd2) (diffs)
  • sample-extractors/wordcount-simple-r-extractor/Dockerfile (version 0751f96e1b435ff6534467e481b76a2d80c65fd2) (diffs)
  • sample-extractors/wordcount-simple-r-extractor/extractor_info.json (version 0751f96e1b435ff6534467e481b76a2d80c65fd2) (diffs)
  • sample-extractors/wordcount-simple-r-extractor/wordcount.R (version 0751f96e1b435ff6534467e481b76a2d80c65fd2) (diffs)
• 

  Todd Nicholson 22 Oct 2018 6c18c50d54f6e7e23e4bd3df9c1b3f5cbb18c453 m

  when uploading previews, metadata cannot be posted unless a section_id is included in the metadata. Since section_id is not required for preview metadata in clowder, this changes the requirement that section_id must be present to post metadata.
  Also, if metadata is sent to upload_preview without a section_id, an error is thrown because the method checks for section_id key and it is not present.
  
  changelog entry added
  
  Updated changelog.
  
  fixed per Sandeep's comment
  
  check for section_id key in previewmetadata in collections.upload_preview
  
  Updated changelog.

  • CHANGELOG.md (version 6c18c50d54f6e7e23e4bd3df9c1b3f5cbb18c453) (diffs)
  • pyclowder/collections.py (version 6c18c50d54f6e7e23e4bd3df9c1b3f5cbb18c453) (diffs)
  • pyclowder/files.py (version 6c18c50d54f6e7e23e4bd3df9c1b3f5cbb18c453) (diffs)
• 

  Rob Kooper 01 Oct 2018 5f20e20301c17a55d8387eeefeb1f51a704666da m

  Merge pull request #75 in CATS/pyclowder2 from BD-2226-add-docker-compose-file-to-pyclowder2 to develop
  * commit '184bff6755b01cc7ce2d53e05d513bcc426973a4':
    Updated changelog.
    Added Docker Compose file.
• 

  Rob Kooper 31 Aug 2018 10c3dc319f976e1610710a99923ac3a2964fbb25 m

  make sure to push simple extractor

  • release.sh (version 10c3dc319f976e1610710a99923ac3a2964fbb25) (diffs)
• 

  Sandeep Puthanveetil Satheesan 14 Aug 2018 60c7debe2a94fee8e3b07f3c9f5b6b813b2f741a m

  Updated word count simple extractor with more comments. Renamed the function variable.

  • sample-extractors/wordcount-simple-extractor/wordcount.py (version 60c7debe2a94fee8e3b07f3c9f5b6b813b2f741a) (diffs)
• 

  Sandeep Puthanveetil Satheesan 14 Aug 2018 184bff6755b01cc7ce2d53e05d513bcc426973a4 m

  Updated changelog.

  • CHANGELOG.md (version 184bff6755b01cc7ce2d53e05d513bcc426973a4) (diffs)
• 

  Sandeep Puthanveetil Satheesan 14 Aug 2018 1cc660573d7efac6fcb60bb6028ce9b557ba3198 m

  Added Docker Compose file.

  • docker-compose.yml (version 1cc660573d7efac6fcb60bb6028ce9b557ba3198) (diffs)
• 

  Rob Kooper 12 Jul 2018 1d5a55180162d474d85d830813b920c410f365bc m

  make sure to listen to right queuename
  this will not overwrite the extractor_info['name'] which was done in the past.
  bump version number

  • CHANGELOG.md (version 1d5a55180162d474d85d830813b920c410f365bc) (diffs)
  • docs/source/conf.py (version 1d5a55180162d474d85d830813b920c410f365bc) (diffs)
  • pyclowder/connectors.py (version 1d5a55180162d474d85d830813b920c410f365bc) (diffs)
  • pyclowder/extractors.py (version 1d5a55180162d474d85d830813b920c410f365bc) (diffs)
  • release.sh (version 1d5a55180162d474d85d830813b920c410f365bc) (diffs)
  • setup.py (version 1d5a55180162d474d85d830813b920c410f365bc) (diffs)
• 

  Rob Kooper 09 Jul 2018 6f9f9b8482188dcf780001f529688b83d26bd2e5 m

  read extractor_info['name']

  • CHANGELOG.md (version 6f9f9b8482188dcf780001f529688b83d26bd2e5) (diffs)
  • pyclowder/extractors.py (version 6f9f9b8482188dcf780001f529688b83d26bd2e5) (diffs)
• 

  Rob Kooper 06 Jul 2018 fe88e366bd11c37a9c7981c996d114ea49f8a7d4 m

  version bump

  • CHANGELOG.md (version fe88e366bd11c37a9c7981c996d114ea49f8a7d4) (diffs)
  • docs/source/conf.py (version fe88e366bd11c37a9c7981c996d114ea49f8a7d4) (diffs)
  • release.sh (version fe88e366bd11c37a9c7981c996d114ea49f8a7d4) (diffs)
  • setup.py (version fe88e366bd11c37a9c7981c996d114ea49f8a7d4) (diffs)
• 

  Rob Kooper 19 Jun 2018 a955af287c52e7ce134ec71396d4ca26b23ae39e m

  Merge pull request #67 in CATS/pyclowder2 from BD-2097-simple-extractor-on-file-extraction-e.g-wordcount to develop
  * commit '09b5a3e9cc0466862a23513591672fa497c8c2b1':
    Update sample-extractors/simple-extractor/README.md
    simple extractor onbuild
    Removed init.py
    Removed invalid code in Dockerfile.
    Update sample-extractors/simple-extractor/__init__.py
    Changed print statement to logger debug.
    Fixed Dockerfile.
    Updated gitignore
    1. Moved simple extractor out of pyclowder as part of sample extractors. 2. Started adding README for simple extractor 3. Updated docker file for simple extractor
    Removed extra blank line that was causing build failure.
    simple extractor on file with wordcount example
• 

  Bing Zhang 11 Jun 2018 09b5a3e9cc0466862a23513591672fa497c8c2b1 m

  Update sample-extractors/simple-extractor/README.md

  • sample-extractors/simple-extractor/README.md (version 09b5a3e9cc0466862a23513591672fa497c8c2b1) (diffs)
• 

  Bing Zhang 11 Jun 2018 f2c30bf09d00d8de31de379f2a34a034e23d8cf3 m

  simple extractor onbuild

  • README.md (version f2c30bf09d00d8de31de379f2a34a034e23d8cf3) (diffs)
  • docker.sh (version f2c30bf09d00d8de31de379f2a34a034e23d8cf3) (diffs)
  • sample-extractors/simple-extractor/Dockerfile (version f2c30bf09d00d8de31de379f2a34a034e23d8cf3) (diffs)
  • sample-extractors/simple-extractor/README.md (version f2c30bf09d00d8de31de379f2a34a034e23d8cf3) (diffs)
  • sample-extractors/wordcount-simple-extractor/Dockerfile (version f2c30bf09d00d8de31de379f2a34a034e23d8cf3) (diffs)
• 

  Sandeep Puthanveetil Satheesan 11 Jun 2018 ab8d37f6a4f054fc37bc0297066dfb10e83a50da m

  Removed init.py

  • sample-extractors/simple-extractor/__init__.py (version ab8d37f6a4f054fc37bc0297066dfb10e83a50da) (diffs)
• 

  Sandeep Puthanveetil Satheesan 11 Jun 2018 2dd80bc0173eb1932f566e9cfa3d9e30307f986b m

  Removed invalid code in Dockerfile.

  • sample-extractors/simple-extractor/Dockerfile (version 2dd80bc0173eb1932f566e9cfa3d9e30307f986b) (diffs)
• 

  Sandeep Puthanveetil Satheesan 11 Jun 2018 b66c1f7c0ffbd6de6846bc536708ab107f19bcc5 m

  Update sample-extractors/simple-extractor/__init__.py

  • sample-extractors/simple-extractor/__init__.py (version b66c1f7c0ffbd6de6846bc536708ab107f19bcc5) (diffs)
• 

  Sandeep Puthanveetil Satheesan 11 Jun 2018 9c28d0758f0e7f2ea71c654539a5ba7de0b37c8d m

  Changed print statement to logger debug.

  • sample-extractors/simple-extractor/simple_extractor.py (version 9c28d0758f0e7f2ea71c654539a5ba7de0b37c8d) (diffs)
• 

  Sandeep Puthanveetil Satheesan 11 Jun 2018 36ea5b22de81e18097edb76fd6035bf330df9edc m

  Fixed Dockerfile.

  • sample-extractors/simple-extractor/Dockerfile (version 36ea5b22de81e18097edb76fd6035bf330df9edc) (diffs)
• 

  Sandeep Puthanveetil Satheesan 07 Jun 2018 e466955e68f4942e5d6c293ec1b7571c81b0b639 m

  Merge branch 'BD-2097-simple-extractor-on-file-extraction-e.g-wordcount' of https://opensource.ncsa.illinois.edu/bitbucket/scm/cats/pyclowder2 into BD-2097-simple-extractor-on-file-extraction-e.g-wordcount
• 

  Sandeep Puthanveetil Satheesan 07 Jun 2018 042ad1f5d384495f59fed8fe475b6425f48970e7 m

  Updated gitignore

  • .gitignore (version 042ad1f5d384495f59fed8fe475b6425f48970e7) (diffs)
• 

  Sandeep Puthanveetil Satheesan 07 Jun 2018 edabd4aabd98c30e4bfa18d7b5eea8576137764d m

  1. Moved simple extractor out of pyclowder as part of sample extractors. 2. Started adding README for simple extractor 3. Updated docker file for simple extractor

  • docker.sh (version edabd4aabd98c30e4bfa18d7b5eea8576137764d) (diffs)
  • pyclowder/simpleextractor.py (version edabd4aabd98c30e4bfa18d7b5eea8576137764d) (diffs)
  • sample-extractors/simple-extractor/Dockerfile (version edabd4aabd98c30e4bfa18d7b5eea8576137764d) (diffs)
  • sample-extractors/simple-extractor/README.md (version edabd4aabd98c30e4bfa18d7b5eea8576137764d) (diffs)
  • sample-extractors/simple-extractor/__init__.py (version edabd4aabd98c30e4bfa18d7b5eea8576137764d) (diffs)
  • sample-extractors/simple-extractor/simple_extractor.py (version edabd4aabd98c30e4bfa18d7b5eea8576137764d) (diffs)
  • sample-extractors/wordcount-simple-extractor/Dockerfile (version edabd4aabd98c30e4bfa18d7b5eea8576137764d) (diffs)
  • sample-extractors/wordcount-simple-extractor/extractor_info.json (version edabd4aabd98c30e4bfa18d7b5eea8576137764d) (diffs)
  • sample-extractors/wordcount-simple-extractor/wordcount.py (version edabd4aabd98c30e4bfa18d7b5eea8576137764d) (diffs)
  • sample-extractors/wordcount-simpleextractor/Dockerfile (version edabd4aabd98c30e4bfa18d7b5eea8576137764d) (diffs)
  • sample-extractors/wordcount-simpleextractor/extractor_info.json (version edabd4aabd98c30e4bfa18d7b5eea8576137764d) (diffs)
  • sample-extractors/wordcount-simpleextractor/wordcount.py (version edabd4aabd98c30e4bfa18d7b5eea8576137764d) (diffs)
• 

  Rob Kooper 14 May 2018 b528b56b9bf6abe5144553d9f9a0ab75e7a3b007 m

  remove debug statement

  • pyclowder/connectors.py (version b528b56b9bf6abe5144553d9f9a0ab75e7a3b007) (diffs)
• 

  Rob Kooper 14 May 2018 755978df78dc88766ebabc783c917a062dcfc5d6 m

  fix race condition with messages
  thread needs to be finished and no more messages to be send. Done in lock operation to be atomic.

  • pyclowder/connectors.py (version 755978df78dc88766ebabc783c917a062dcfc5d6) (diffs)
• 

  Sandeep Puthanveetil Satheesan 09 May 2018 b708a11a69d55aa34fa16cf74b67dc84faff4859 m

  Removed extra blank line that was causing build failure.

  • pyclowder/simpleextractor.py (version b708a11a69d55aa34fa16cf74b67dc84faff4859) (diffs)
• 

  Bing Zhang 07 May 2018 1d7956333a3523897de0bec3eddd1535be76e493 m

  simple extractor on file with wordcount example
  move simpleextractor as a module of pyclowder, and update README and wordcount-simpleextractor
  
  update README
  
  simple extractor on file with wordcount example
  
  update docker.sh to add docker build for wordcount-simpleextractor and docker push

  • README.md (version 1d7956333a3523897de0bec3eddd1535be76e493) (diffs)
  • docker.sh (version 1d7956333a3523897de0bec3eddd1535be76e493) (diffs)
  • pyclowder/simpleextractor.py (version 1d7956333a3523897de0bec3eddd1535be76e493) (diffs)
  • sample-extractors/README.md (version 1d7956333a3523897de0bec3eddd1535be76e493) (diffs)
  • sample-extractors/wordcount-simpleextractor/Dockerfile (version 1d7956333a3523897de0bec3eddd1535be76e493) (diffs)
  • sample-extractors/wordcount-simpleextractor/extractor_info.json (version 1d7956333a3523897de0bec3eddd1535be76e493) (diffs)
  • sample-extractors/wordcount-simpleextractor/wordcount.py (version 1d7956333a3523897de0bec3eddd1535be76e493) (diffs)
• 

  Rob Kooper 18 Apr 2018 5cf15e8c113145765727b74cc0b6be3319ee1739 m

  fix for non bash run

  • release.sh (version 5cf15e8c113145765727b74cc0b6be3319ee1739) (diffs)
• 

  Rob Kooper 18 Apr 2018 a8d8eac940bc94eafbb0514ca11a7fbd1fd1b1f0 m

  add binany-preview to changelog

  • CHANGELOG.md (version a8d8eac940bc94eafbb0514ca11a7fbd1fd1b1f0) (diffs)
• 

  Rob Kooper 18 Apr 2018 cde48f3dd5e2f329d082d002a48b0f74b971505a m

  Add CHANGELOG

  • CHANGELOG.md (version cde48f3dd5e2f329d082d002a48b0f74b971505a) (diffs)
• 

  Rob Kooper 18 Apr 2018 0119381b73c7f09512684c1c2b856a30887fa1a8 m

  set version to 2.0.3

  • release.sh (version 0119381b73c7f09512684c1c2b856a30887fa1a8) (diffs)
  • setup.py (version 0119381b73c7f09512684c1c2b856a30887fa1a8) (diffs)
• 

  Rob Kooper 18 Apr 2018 398b97599717db9942732cf101a7bb8ab47a2cf1 m

  Merge pull request #65 in CATS/pyclowder2 from CATS-872-core-extractors-need-to-be-ported-to-pyclowder-2 to develop
  * commit '64122109cec2f510038417a4ec0c3b445cfb4aff':
    cleanup docker builds - added a simple extractor that works on binary files and creates image thumbnail, image preview and preview - docker.sh simplified now to be used when pushing tags/releases - split docker.sh into release.sh and docker.sh. docker.sh will build docker containers, release.sh will do the actual push to docker hub.
• 

  Rob Kooper 18 Apr 2018 64122109cec2f510038417a4ec0c3b445cfb4aff m

  cleanup docker builds - added a simple extractor that works on binary files and creates image thumbnail, image preview and preview - docker.sh simplified now to be used when pushing tags/releases - split docker.sh into release.sh and docker.sh. docker.sh will build docker containers, release.sh will do the actual push to docker hub.

  • Dockerfile (version 64122109cec2f510038417a4ec0c3b445cfb4aff) (diffs)
  • Dockerfile.onbuild (version 64122109cec2f510038417a4ec0c3b445cfb4aff) (diffs)
  • docker-compose.yml (version 64122109cec2f510038417a4ec0c3b445cfb4aff) (diffs)
  • docker.sh (version 64122109cec2f510038417a4ec0c3b445cfb4aff) (diffs)
  • entrypoint.sh (version 64122109cec2f510038417a4ec0c3b445cfb4aff) (diffs)
  • release.sh (version 64122109cec2f510038417a4ec0c3b445cfb4aff) (diffs)
  • sample-extractors/binary-preview/Dockerfile (version 64122109cec2f510038417a4ec0c3b445cfb4aff) (diffs)
  • sample-extractors/binary-preview/README.rst (version 64122109cec2f510038417a4ec0c3b445cfb4aff) (diffs)
  • sample-extractors/binary-preview/binary_extractor.py (version 64122109cec2f510038417a4ec0c3b445cfb4aff) (diffs)
• 

  Bing Zhang 12 Apr 2018 aec169a3cf86cf6775269c4eed9edd1b6431a1ac m

  set default RABBITMQ_URI

  • Dockerfile (version aec169a3cf86cf6775269c4eed9edd1b6431a1ac) (diffs)
  • entrypoint.sh (version aec169a3cf86cf6775269c4eed9edd1b6431a1ac) (diffs)
• 

  Bing Zhang 09 Apr 2018 3a9d80037841198f6c5532d96be1388cc40b0460 m

  add default rabbitmq env variables in Dockerfile, add logic to construct RABBITMQ_URI if RABBITMQ_URI is not specified

  • Dockerfile (version 3a9d80037841198f6c5532d96be1388cc40b0460) (diffs)
  • entrypoint.sh (version 3a9d80037841198f6c5532d96be1388cc40b0460) (diffs)
• 

  Rob Kooper 02 Apr 2018 0553eef2c8ad9bef7e54f0800ae3b6189e02e273 m

  Merge pull request #60 in CATS/pyclowder2 from pypi to develop
  * commit '6b14c9726e19250e86e116094775d7741e88ad36':
    use setup.py when creating dockerfile, requirements for editor/testing
    Fixed build errors, updated python packages
    Modify markup to render description.rst in PyPI.
    Add missing MANIFEST.in file.
    Change package description (it was for terrautils).
    More whitespace.
    More whitespace cleanup.
    Add Rob Kooper has author within setup.py.
    Fix bugs with DatasetApi class.
    Add basic metadata to setup.py and create new description.rst file.
    Add standard .gitignore and .dockerignore files.
• 

  Rob Kooper 02 Apr 2018 6b14c9726e19250e86e116094775d7741e88ad36 m

  use setup.py when creating dockerfile, requirements for editor/testing

  • Dockerfile (version 6b14c9726e19250e86e116094775d7741e88ad36) (diffs)
  • requirements-test.txt (version 6b14c9726e19250e86e116094775d7741e88ad36) (diffs)
  • requirements.txt (version 6b14c9726e19250e86e116094775d7741e88ad36) (diffs)
  • setup.py (version 6b14c9726e19250e86e116094775d7741e88ad36) (diffs)
• 

  Rob Kooper 02 Apr 2018 d2b1b06d33f756761fbd8759ccfa35d8ca1a6aef m

  Fixed build errors, updated python packages

  • Dockerfile (version d2b1b06d33f756761fbd8759ccfa35d8ca1a6aef) (diffs)
  • requirements-test.txt (version d2b1b06d33f756761fbd8759ccfa35d8ca1a6aef) (diffs)
  • requirements.txt (version d2b1b06d33f756761fbd8759ccfa35d8ca1a6aef) (diffs)
  • setup.py (version d2b1b06d33f756761fbd8759ccfa35d8ca1a6aef) (diffs)
• 

  Rob Kooper 02 Apr 2018 e59122676940045cc5aa7b3cbc4add33b37f6ec8 m

  Merge remote-tracking branch 'origin/master' into pypi
• 

  Bing Zhang 26 Mar 2018 5e12f087fd1f7589a04b0a7b10329258ecb051c6 m

  fix exec python

  • entrypoint.sh (version 5e12f087fd1f7589a04b0a7b10329258ecb051c6) (diffs)
• 

  Rob Kooper 26 Mar 2018 88298c843164aa9573f37c2c9626ab94770a3d1f m

  Cleanup onbuild docker file.
  Fix issue with chmod not being able to run in onbuild
  - now using python to launch the main file
  
  Smart use of copy (requirements.txt* Dockerfile) to make sure we specific files in docker build process before copying all files. By using requirements.txt* Dockerfile we will make sure we always copy a file (Dockerfile) and the copy operation will not fail.
  
  Added more documentation on how to use onbuild.

  • Dockerfile (version 88298c843164aa9573f37c2c9626ab94770a3d1f) (diffs)
  • Dockerfile.onbuild (version 88298c843164aa9573f37c2c9626ab94770a3d1f) (diffs)
  • README.md (version 88298c843164aa9573f37c2c9626ab94770a3d1f) (diffs)
  • entrypoint.sh (version 88298c843164aa9573f37c2c9626ab94770a3d1f) (diffs)
  • sample-extractors/wordcount/Dockerfile (version 88298c843164aa9573f37c2c9626ab94770a3d1f) (diffs)
• 

  Rob Kooper 23 Mar 2018 edf58e603df02f2d781c6a6e3ece542341dff01f m

  Merge pull request #49 in CATS/pyclowder2 from add-delete-methods to develop
  * commit '321a79081f8bc16454a2154b93a285841d94d9c9':
    add delete methods for collections & datasets
• 

  Rob Kooper 23 Mar 2018 0ccb9308244a22803659e3aa24bfb3b7318dee18 m

  update to zenodo

  • .zenodo.json (version 0ccb9308244a22803659e3aa24bfb3b7318dee18) (diffs)
  • README.md (version 0ccb9308244a22803659e3aa24bfb3b7318dee18) (diffs)
• 

  Rob Kooper 23 Mar 2018 045852e02886a51904af9f6b739d4d9c6a04a07c m

  update .zenodo.json

  • .zenodo.json (version 045852e02886a51904af9f6b739d4d9c6a04a07c) (diffs)
• 

  Rob Kooper 23 Mar 2018 c45ec9c7d2940e5ba246241a8c8de6c0ba194d55 m

  update .zenodo.json

  • .zenodo.json (version c45ec9c7d2940e5ba246241a8c8de6c0ba194d55) (diffs)
• 

  Rob Kooper 23 Mar 2018 7dd73948a2b8ea47aa74d4c4d1252f27e748fb7b m

  added file to publish to zenodo

  • .zenodo.json (version 7dd73948a2b8ea47aa74d4c4d1252f27e748fb7b) (diffs)
• 

  Bing Zhang 21 Mar 2018 07479762d40d6a3bd3e6e9e45fa29b0eb3e0d35e m

  use single '=' compare under dash shell

  • docker.sh (version 07479762d40d6a3bd3e6e9e45fa29b0eb3e0d35e) (diffs)
• 

  Jeff Terstriep 12 Mar 2018 d6282dde49202481e6635b08cb15dc72bd7c88df m

  Modify markup to render description.rst in PyPI.

  • .gitignore (version d6282dde49202481e6635b08cb15dc72bd7c88df) (diffs)
  • description.rst (version d6282dde49202481e6635b08cb15dc72bd7c88df) (diffs)
  • setup.py (version d6282dde49202481e6635b08cb15dc72bd7c88df) (diffs)
• 

  Jeff Terstriep 12 Mar 2018 4680f9f65b522652e52bd32990eeecaa66b315fc m

  Add missing MANIFEST.in file.

  • MANIFEST.in (version 4680f9f65b522652e52bd32990eeecaa66b315fc) (diffs)
• 

  Jeff Terstriep 09 Mar 2018 bc70974b3d0559353b2dd82d3f868a60eb0a6ac6 m

  Change package description (it was for terrautils).

  • setup.py (version bc70974b3d0559353b2dd82d3f868a60eb0a6ac6) (diffs)
• 

  Jeff Terstriep 08 Mar 2018 5e6b9bfbd5644a52eca9f2cb0ac737732c8c8727 m

  More whitespace.

  • setup.py (version 5e6b9bfbd5644a52eca9f2cb0ac737732c8c8727) (diffs)
• 

  Jeff Terstriep 08 Mar 2018 2b381f7ecb8740d8b06477f343e601fc0d8d5d1d m

  More whitespace cleanup.

  • setup.py (version 2b381f7ecb8740d8b06477f343e601fc0d8d5d1d) (diffs)
• 

  Jeff Terstriep 08 Mar 2018 4dd8bd7f464b47cf9933b57a30d46f99222898fe m

  Add Rob Kooper has author within setup.py.

  • pyclowder/datasets.py (version 4dd8bd7f464b47cf9933b57a30d46f99222898fe) (diffs)
  • setup.py (version 4dd8bd7f464b47cf9933b57a30d46f99222898fe) (diffs)
• 

  Jeff Terstriep 08 Mar 2018 66ee26f2911f03ec72e7dcc57e7638be41fd8dd0 m

  Fix bugs with DatasetApi class.
  One of the bugs was related to other aspects of Clowder url routing. The
  datasets_get call attempted to contruct the url but included a trailing
  slash. This caused something with Clowder to re-write the url dropping
  the clowder in the path.
  
  https://clowder.ncsa.illinois.edu/clowder/api/datasets/ became
  https://clowder.ncsa.illinois.edu/api/datasets and resulted in a 404.

  • pyclowder/datasets.py (version 66ee26f2911f03ec72e7dcc57e7638be41fd8dd0) (diffs)
• 

  Jeff Terstriep 08 Mar 2018 344177715f83350705e5b60a7bd6dc2504a7ed2a m

  Add basic metadata to setup.py and create new description.rst file.

  • description.rst (version 344177715f83350705e5b60a7bd6dc2504a7ed2a) (diffs)
  • setup.py (version 344177715f83350705e5b60a7bd6dc2504a7ed2a) (diffs)
• 

  Jeff Terstriep 08 Mar 2018 b85614f2e3ef93be85ea4c2716ab024d56b05a3c m

  Add standard .gitignore and .dockerignore files.

  • .dockerignore (version b85614f2e3ef93be85ea4c2716ab024d56b05a3c) (diffs)
  • .gitignore (version b85614f2e3ef93be85ea4c2716ab024d56b05a3c) (diffs)
• 

  Rob Kooper 28 Feb 2018 735b067854949a4e4e7184f9f503414c52478d91 m

  Merge pull request #43 in CATS/pyclowder2 from CATS-790-dockerfile-in-pyclowder-needs-env to master
  * commit 'cfa42c875f731fa6b24aafb51565a67df4cc8a58':
    remove debug statement
    create onbuild docker image as well as simplify docker.sh file.
    allo for simpler Dockerfiles for extractors
• 

  Sandeep Puthanveetil Satheesan 27 Feb 2018 62b51f40a46e36ab5a68e21bb966601473180fe1 m

  Merge pull request #59 in CATS/pyclowder2 from Fix-installation-instructions to master
  * commit 'e295af5e1619e97a9f32e27a33a2a7cbf0b18ff6':
    Updated README by correcting installation instructions
• 

  Max Burnette <mburnet2@illinois.com> 26 Feb 2018 321a79081f8bc16454a2154b93a285841d94d9c9 m

  Merge branch 'master' into add-delete-methods
  # Conflicts:
  #        pyclowder/datasets.py
• 

  Sandeep Puthanveetil Satheesan 22 Feb 2018 e295af5e1619e97a9f32e27a33a2a7cbf0b18ff6 m

  Updated README by correcting installation instructions

  • README.md (version e295af5e1619e97a9f32e27a33a2a7cbf0b18ff6) (diffs)
• 

  Sandeep Puthanveetil Satheesan 20 Feb 2018 b9ca59a429e4a82e357cf212a2d7681957c198f1 m

  Added support for custom preview file MIME types.

  • pyclowder/files.py (version b9ca59a429e4a82e357cf212a2d7681957c198f1) (diffs)
• 

  Indira Gutierrez Polo 19 Feb 2018 fe59555f96ca256ff32e50af2f5a82261e12417c m

  Fixing Pep8 line length issues

  • pyclowder/sections.py (version fe59555f96ca256ff32e50af2f5a82261e12417c) (diffs)
• 

  Indira Gutierrez Polo 19 Feb 2018 012a0fdaca573ef5e61b5e6a3e17d9cfa1b21b9d m

  Adding PyDocs

  • pyclowder/collections.py (version 012a0fdaca573ef5e61b5e6a3e17d9cfa1b21b9d) (diffs)
• 

  Indira Gutierrez Polo 19 Feb 2018 7f8caa0d35eaaaa66666bfa162db08d3fb02b37c m

  Adding some collections endpoints

  • pyclowder/collections.py (version 7f8caa0d35eaaaa66666bfa162db08d3fb02b37c) (diffs)
• 

  Rob Kooper 09 Feb 2018 cfa42c875f731fa6b24aafb51565a67df4cc8a58 m

  remove debug statement

  • docker.sh (version cfa42c875f731fa6b24aafb51565a67df4cc8a58) (diffs)
  • sample-extractors/wordcount/Dockerfile (version cfa42c875f731fa6b24aafb51565a67df4cc8a58) (diffs)
• 

  Rob Kooper 09 Feb 2018 8850c322001438d3db110fb4c46567544bd52801 m

  create onbuild docker image as well as simplify docker.sh file.

  • Dockerfile (version 8850c322001438d3db110fb4c46567544bd52801) (diffs)
  • Dockerfile.onbuild (version 8850c322001438d3db110fb4c46567544bd52801) (diffs)
  • docker.sh (version 8850c322001438d3db110fb4c46567544bd52801) (diffs)
  • sample-extractors/wordcount/Dockerfile (version 8850c322001438d3db110fb4c46567544bd52801) (diffs)
• 

  Rob Kooper 05 Feb 2018 f1cf000bba2d9a4919e433dac1722c7c7c4b9471 m

  Merge pull request #56 in CATS/pyclowder2 from kgm-documentation-tweaks to master
  * commit '7a361f64088dd0a457a7d7e79fc80e15641e85fe':
    Added setup to README.
• 

  Kenton McHenry 16 Jan 2018 7a361f64088dd0a457a7d7e79fc80e15641e85fe m

  Added setup to README.

  • README.md (version 7a361f64088dd0a457a7d7e79fc80e15641e85fe) (diffs)
• 

  Rob Kooper 16 Jan 2018 994d4f8527a3cda12ad2e25963eb5d6815d134ea m

  Merge pull request #55 in CATS/pyclowder2 from ~WPOELY86/pyclowder2:feature/upload_section_description to master
  * commit 'db914c4713f47b6ca144daed5350f63f0ba3dabe':
    Add upload_description to sections
• 

  Rob Kooper 03 Nov 2017 805f087c820703592da159e2229046521b940754 m

  Merge pull request #46 in CATS/pyclowder2 from add_clowder_client to master
  * commit '71b1e1f0cf221dfbaa710edc79a268e405704b2a':
    cleanup of ClowderClient, added simple test
    Formatting
    Adding clowder client and class DatasetsAPI from geostreams
• 

  Ward Poelmans 31 Oct 2017 db914c4713f47b6ca144daed5350f63f0ba3dabe m

  Add upload_description to sections

  • pyclowder/sections.py (version db914c4713f47b6ca144daed5350f63f0ba3dabe) (diffs)
• 

  Rob Kooper 25 Oct 2017 71b1e1f0cf221dfbaa710edc79a268e405704b2a m

  cleanup of ClowderClient, added simple test

  • pyclowder/client.py (version 71b1e1f0cf221dfbaa710edc79a268e405704b2a) (diffs)
  • tests/clientTest.py (version 71b1e1f0cf221dfbaa710edc79a268e405704b2a) (diffs)
• 

  Rob Kooper 25 Oct 2017 30e1e5c48f8c5427b6aa9f9b95dd48669f418ffd m

  Merge pull request #51 in CATS/pyclowder2 from BD-1836-teach-pyclowder-to-use-the-rabbitmq_queue to master
  * commit '22cb863cbe293e18b3b3955fb3064b7df2360eb0':
    add command line option to pass queue name
    use QUEUE_NAME env to overwrite extractor's queue name
• 

  Bing Zhang 24 Oct 2017 22cb863cbe293e18b3b3955fb3064b7df2360eb0 m

  add command line option to pass queue name

  • pyclowder/extractors.py (version 22cb863cbe293e18b3b3955fb3064b7df2360eb0) (diffs)
• 

  Rob Kooper 18 Oct 2017 530a8acc2c29548b2b59238f3fec8c1a3e88f95b m

  Merge pull request #48 in CATS/pyclowder2 from fix-nested-file-extractions to master
  * commit '45b46eb0d1e33fd2f269599999922903b61138fd':
    fix recursive calls
• 

  Bing Zhang 18 Oct 2017 dfa77618bf17e46dc8c5c24dee1f1801fe2e07be m

  use QUEUE_NAME env to overwrite extractor's queue name

  • pyclowder/extractors.py (version dfa77618bf17e46dc8c5c24dee1f1801fe2e07be) (diffs)