Next Generation of pyClowder
Build: #1 failed
Job: Default Job failed
Build log
The build generated 148 lines of output. Download or view full build log.
| 01-Dec-2019 07:34:45 | Build Clowder - pyclowder2 - separate-extractor-message-and-type - Default Job #1 (CATS-PYC2104-JOB1-1) started building on agent buildserver-2.os.ncsa.edu |
| 01-Dec-2019 07:34:45 | Remote agent on host buildserver-2.os.ncsa.edu |
| 01-Dec-2019 07:34:45 | Build working directory is /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC2104-JOB1 |
| 01-Dec-2019 07:34:45 | Executing build Clowder - pyclowder2 - separate-extractor-message-and-type - Default Job #1 (CATS-PYC2104-JOB1-1) |
| 01-Dec-2019 07:34:45 | Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout' |
| 01-Dec-2019 07:34:45 | Checking out into /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC2104-JOB1 |
| 01-Dec-2019 07:34:45 | Updating source code to revision: b80eb33d4fb6d394de173d7c2fdf1d2a294f4e40 |
| 01-Dec-2019 07:34:45 | Creating local git repository in '/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC2104-JOB1/.git'. |
| 01-Dec-2019 07:34:45 | Initialized empty Git repository in /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC2104-JOB1/.git/ |
| 01-Dec-2019 07:36:07 | Fetching 'refs/heads/separate-extractor-message-and-type' from 'ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git'. Will try to do a shallow fetch. |
| 01-Dec-2019 07:36:07 | Warning: Permanently added '[127.0.0.1]:40351' (RSA) to the list of known hosts. |
| 01-Dec-2019 07:36:07 | From ssh://127.0.0.1:40351/cats/pyclowder2 |
| 01-Dec-2019 07:36:07 | * [new branch] separate-extractor-message-and-type -> separate-extractor-message-and-type |
| 01-Dec-2019 07:36:07 | Checking out revision b80eb33d4fb6d394de173d7c2fdf1d2a294f4e40. |
| 01-Dec-2019 07:36:07 | Switched to branch 'separate-extractor-message-and-type' |
| 01-Dec-2019 07:36:07 | Updated source code to revision: b80eb33d4fb6d394de173d7c2fdf1d2a294f4e40 |
| 01-Dec-2019 07:36:07 | Finished task 'Checkout Default Repository' with result: Success |
| 01-Dec-2019 07:36:07 | Running pre-build action: VCS Version Collector |
| 01-Dec-2019 07:36:07 | Starting task 'python 2 - pytest' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script' |
| 01-Dec-2019 07:36:07 | Beginning to execute external process for build 'Clowder - pyclowder2 - separate-extractor-message-and-type - Default Job #1 (CATS-PYC2104-JOB1-1)' ... running command line: /home/bamboo/bamboo-agent-home/temp/CATS-PYC2104-JOB1-1-ScriptBuildTask-3519368552053977054.sh ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC2104-JOB1 ... using extra environment variables: bamboo_planRepository_1_branch=separate-extractor-message-and-type bamboo_capability_system_builder_command_npm_6=/home/bamboo/node-v6.9.1/bin/npm bamboo_capability_system_builder_command_buckminster_4_3=/home/bamboo/buckminster-4.3/buckminster bamboo_capability_system_builder_node_Node_js_v6_9_1=/home/bamboo/node-v6.9.1/bin/node bamboo_capability_system_builder_command_buckminster_4_4=/home/bamboo/buckminster-4.4/buckminster bamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster bamboo_planRepository_1_branchDisplayName=separate-extractor-message-and-type bamboo_repository_revision_number=b80eb33d4fb6d394de173d7c2fdf1d2a294f4e40 bamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-PYC2104-JOB1-1 bamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build bamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC2104-JOB1 bamboo_planRepository_1_name=pyclowder2 bamboo_buildKey=CATS-PYC2104-JOB1 bamboo_capability_system_os=linux bamboo_repository_179109890_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git bamboo_repository_179109890_name=pyclowder2 bamboo_shortPlanName=pyclowder2 bamboo_planRepository_name=pyclowder2 bamboo_buildNumber=1 bamboo_capability_system_builder_node_grunt_6=/home/bamboo/node-v6.9.1/bin/grunt bamboo_shortJobName=Default Job bamboo_capability_system_builder_command_python3_6=/usr/bin/python3.6 bamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-PYC2104-JOB1-1 bamboo_planRepository_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git bamboo_agentId=140673028 bamboo_planName=Clowder - 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| 01-Dec-2019 07:36:08 | New python executable in /tmp/virtualenv/pyclowder2-p2/bin/python2 |
| 01-Dec-2019 07:36:08 | Also creating executable in /tmp/virtualenv/pyclowder2-p2/bin/python |
| 01-Dec-2019 07:36:12 | Installing setuptools, pkg_resources, pip, wheel...done. |
| 01-Dec-2019 07:36:12 | Running virtualenv with interpreter /usr/bin/python2 |
| 01-Dec-2019 07:36:12 | DEPRECATION: Python 2.7 will reach the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 won't be maintained after that date. A future version of pip will drop support for Python 2.7. More details about Python 2 support in pip, can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support |
| 01-Dec-2019 07:36:13 | Collecting enum34==1.1.6 |
| 01-Dec-2019 07:36:13 | Using cached https://files.pythonhosted.org/packages/c5/db/e56e6b4bbac7c4a06de1c50de6fe1ef3810018ae11732a50f15f62c7d050/enum34-1.1.6-py2-none-any.whl |
| 01-Dec-2019 07:36:13 | Collecting pika==1.0.0 |
| 01-Dec-2019 07:36:13 | Using cached https://files.pythonhosted.org/packages/53/a4/5aff2293e1cdcf5f77447ebdfeaac99b622aef7d1e723cf9a5fe317b077c/pika-1.0.0-py2.py3-none-any.whl |
| 01-Dec-2019 07:36:13 | Processing /home/bamboo/.cache/pip/wheels/ad/56/bc/1522f864feb2a358ea6f1a92b4798d69ac783a28e80567a18b/PyYAML-5.1-cp27-cp27mu-linux_x86_64.whl |
| 01-Dec-2019 07:36:13 | Collecting requests==2.21.0 |
| 01-Dec-2019 07:36:13 | Using cached https://files.pythonhosted.org/packages/7d/e3/20f3d364d6c8e5d2353c72a67778eb189176f08e873c9900e10c0287b84b/requests-2.21.0-py2.py3-none-any.whl |
| 01-Dec-2019 07:36:13 | Collecting wheel==0.33.1 |
| 01-Dec-2019 07:36:13 | Using cached https://files.pythonhosted.org/packages/96/ba/a4702cbb6a3a485239fbe9525443446203f00771af9ac000fa3ef2788201/wheel-0.33.1-py2.py3-none-any.whl |
| 01-Dec-2019 07:36:13 | Collecting urllib3==1.24.1 |
| 01-Dec-2019 07:36:13 | Using cached https://files.pythonhosted.org/packages/62/00/ee1d7de624db8ba7090d1226aebefab96a2c71cd5cfa7629d6ad3f61b79e/urllib3-1.24.1-py2.py3-none-any.whl |
| 01-Dec-2019 07:36:13 | Collecting pytest==4.3.1 |
| 01-Dec-2019 07:36:14 | Using cached https://files.pythonhosted.org/packages/c8/52/c455e718f19e4fd7126c81b4910ca2431ded6c28b97e36a1a1f5e5ef7247/pytest-4.3.1-py2.py3-none-any.whl |
| 01-Dec-2019 07:36:14 | Processing /home/bamboo/.cache/pip/wheels/68/34/52/2a6e08e030cef8b3671898f34cecb12750cc4b96ebfe66fe67/pytest_pep8-1.0.6-cp27-none-any.whl |
| 01-Dec-2019 07:36:14 | Collecting requests-toolbelt==0.9.1 |
| 01-Dec-2019 07:36:14 | Using cached https://files.pythonhosted.org/packages/60/ef/7681134338fc097acef8d9b2f8abe0458e4d87559c689a8c306d0957ece5/requests_toolbelt-0.9.1-py2.py3-none-any.whl |
| 01-Dec-2019 07:36:14 | Collecting certifi>=2017.4.17 |
| 01-Dec-2019 07:36:14 | Downloading https://files.pythonhosted.org/packages/b9/63/df50cac98ea0d5b006c55a399c3bf1db9da7b5a24de7890bc9cfd5dd9e99/certifi-2019.11.28-py2.py3-none-any.whl (156kB) |
| 01-Dec-2019 07:36:14 | Collecting chardet<3.1.0,>=3.0.2 |
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| 01-Dec-2019 07:36:14 | Collecting idna<2.9,>=2.5 |
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| 01-Dec-2019 07:36:14 | Collecting atomicwrites>=1.0 |
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| 01-Dec-2019 07:36:14 | Collecting py>=1.5.0 |
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| 01-Dec-2019 07:36:14 | Requirement already satisfied: setuptools in /tmp/virtualenv/pyclowder2-p2/lib/python2.7/site-packages (from pytest==4.3.1->-r requirements.txt (line 7)) (42.0.1) |
| 01-Dec-2019 07:36:15 | Collecting six>=1.10.0 |
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| 01-Dec-2019 07:36:15 | Collecting pathlib2>=2.2.0; python_version < "3.6" |
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| 01-Dec-2019 07:36:15 | Collecting pluggy>=0.7 |
| 01-Dec-2019 07:36:15 | Downloading https://files.pythonhosted.org/packages/a0/28/85c7aa31b80d150b772fbe4a229487bc6644da9ccb7e427dd8cc60cb8a62/pluggy-0.13.1-py2.py3-none-any.whl |
| 01-Dec-2019 07:36:15 | Collecting attrs>=17.4.0 |
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| 01-Dec-2019 07:36:15 | Collecting more-itertools<6.0.0,>=4.0.0; python_version <= "2.7" |
| 01-Dec-2019 07:36:15 | Using cached https://files.pythonhosted.org/packages/2f/9d/dcfe59e213093695f108508af1214cf9cd95cc5489e46877ec5cb56369e5/more_itertools-5.0.0-py2-none-any.whl |
| 01-Dec-2019 07:36:15 | Collecting funcsigs; python_version < "3.0" |
| 01-Dec-2019 07:36:15 | Using cached https://files.pythonhosted.org/packages/69/cb/f5be453359271714c01b9bd06126eaf2e368f1fddfff30818754b5ac2328/funcsigs-1.0.2-py2.py3-none-any.whl |
| 01-Dec-2019 07:36:15 | Collecting pep8>=1.3 |
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| 01-Dec-2019 07:36:15 | Processing /home/bamboo/.cache/pip/wheels/e4/9e/28/59d0a23800e49808f17920c5922252c661966ca4a36db5ee38/pytest_cache-1.0-cp27-none-any.whl |
| 01-Dec-2019 07:36:16 | Processing /home/bamboo/.cache/pip/wheels/91/95/75/19c98a91239878abbc7c59970abd3b4e0438a7dd5b61778335/scandir-1.10.0-cp27-cp27mu-linux_x86_64.whl |
| 01-Dec-2019 07:36:16 | Collecting importlib-metadata>=0.12; python_version < "3.8" |
| 01-Dec-2019 07:36:16 | Downloading https://files.pythonhosted.org/packages/1b/be/33787a21090f171b1582fe2fb617ede1a29b1d26d1576bcfe4b4c4e2bb28/importlib_metadata-1.0.0-py2.py3-none-any.whl |
| 01-Dec-2019 07:36:16 | Collecting execnet>=1.1.dev1 |
| 01-Dec-2019 07:36:16 | Using cached https://files.pythonhosted.org/packages/d3/2e/c63af07fa471e0a02d05793c7a56a9f7d274a8489442a5dc4fb3b2b3c705/execnet-1.7.1-py2.py3-none-any.whl |
| 01-Dec-2019 07:36:16 | Collecting contextlib2; python_version < "3" |
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| 01-Dec-2019 07:36:16 | Collecting zipp>=0.5 |
| 01-Dec-2019 07:36:16 | Using cached https://files.pythonhosted.org/packages/74/3d/1ee25a26411ba0401b43c6376d2316a71addcc72ef8690b101b4ea56d76a/zipp-0.6.0-py2.py3-none-any.whl |
| 01-Dec-2019 07:36:16 | Collecting configparser>=3.5; python_version < "3" |
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| 01-Dec-2019 07:36:16 | Collecting apipkg>=1.4 |
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| 01-Dec-2019 07:36:16 | Installing collected packages: enum34, pika, PyYAML, certifi, chardet, idna, urllib3, requests, wheel, atomicwrites, py, six, scandir, pathlib2, contextlib2, more-itertools, zipp, configparser, importlib-metadata, pluggy, attrs, funcsigs, pytest, pep8, apipkg, execnet, pytest-cache, pytest-pep8, requests-toolbelt |
| 01-Dec-2019 07:36:17 | Found existing installation: wheel 0.33.6 |
| 01-Dec-2019 07:36:17 | Uninstalling wheel-0.33.6: |
| 01-Dec-2019 07:36:17 | Successfully uninstalled wheel-0.33.6 |
| 01-Dec-2019 07:36:17 | Successfully installed PyYAML-5.1 apipkg-1.5 atomicwrites-1.3.0 attrs-19.3.0 certifi-2019.11.28 chardet-3.0.4 configparser-4.0.2 contextlib2-0.6.0.post1 enum34-1.1.6 execnet-1.7.1 funcsigs-1.0.2 idna-2.8 importlib-metadata-1.0.0 more-itertools-5.0.0 pathlib2-2.3.5 pep8-1.7.1 pika-1.0.0 pluggy-0.13.1 py-1.8.0 pytest-4.3.1 pytest-cache-1.0 pytest-pep8-1.0.6 requests-2.21.0 requests-toolbelt-0.9.1 scandir-1.10.0 six-1.13.0 urllib3-1.24.1 wheel-0.33.1 zipp-0.6.0 |
| 01-Dec-2019 07:36:18 | ============================= test session starts ============================== |
| 01-Dec-2019 07:36:18 | platform linux2 -- Python 2.7.12, pytest-4.3.1, py-1.8.0, pluggy-0.13.1 |
| 01-Dec-2019 07:36:18 | rootdir: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC2104-JOB1, inifile: setup.cfg |
| 01-Dec-2019 07:36:18 | plugins: pep8-1.0.6 |
| 01-Dec-2019 07:36:18 | collected 19 items |
| 01-Dec-2019 07:36:18 | |
| 01-Dec-2019 07:36:18 | setup.py . |
| 01-Dec-2019 07:36:18 | docs/source/conf.py . |
| 01-Dec-2019 07:36:18 | pyclowder/__init__.py . |
| 01-Dec-2019 07:36:18 | pyclowder/client.py . |
| 01-Dec-2019 07:36:18 | pyclowder/collections.py . |
| 01-Dec-2019 07:36:18 | pyclowder/connectors.py F |
| 01-Dec-2019 07:36:18 | pyclowder/datasets.py . |
| 01-Dec-2019 07:36:18 | pyclowder/extractors.py . |
| 01-Dec-2019 07:36:18 | pyclowder/files.py . |
| 01-Dec-2019 07:36:18 | pyclowder/geostreams.py . |
| 01-Dec-2019 07:36:18 | pyclowder/sections.py F |
| 01-Dec-2019 07:36:18 | pyclowder/utils.py . |
| 01-Dec-2019 07:36:18 | sample-extractors/binary-preview/binary_extractor.py . |
| 01-Dec-2019 07:36:18 | sample-extractors/echo/echo.py . |
| 01-Dec-2019 07:36:18 | sample-extractors/simple-extractor/simple_extractor.py . |
| 01-Dec-2019 07:36:18 | sample-extractors/simple-r-extractor/r_extractor.py . |
| 01-Dec-2019 07:36:18 | sample-extractors/wordcount/wordcount.py . |
| 01-Dec-2019 07:36:18 | sample-extractors/wordcount-simple-extractor/wordcount.py . |
| 01-Dec-2019 07:36:18 | tests/clientTest.py . |
| 01-Dec-2019 07:36:18 | |
| 01-Dec-2019 07:36:18 | =================================== FAILURES =================================== |
| 01-Dec-2019 07:36:18 | __________________________________ PEP8-check __________________________________ |
| 01-Dec-2019 07:36:18 | /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC2104-JOB1/pyclowder/connectors.py:900:37: E221 multiple spaces before operator |
| 01-Dec-2019 07:36:18 | jbody['retry_count'] = msg['retry_count'] |
| 01-Dec-2019 07:36:18 | ^ |
| 01-Dec-2019 07:36:18 | |
| 01-Dec-2019 07:36:18 | __________________________________ PEP8-check __________________________________ |
| 01-Dec-2019 07:36:18 | /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC2104-JOB1/pyclowder/sections.py:69:29: E128 continuation line under-indented for visual indent |
| 01-Dec-2019 07:36:18 | "Uploading section description.") |
| 01-Dec-2019 07:36:18 | ^ |
| 01-Dec-2019 07:36:18 | |
| 01-Dec-2019 07:36:18 | - generated xml file: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC2104-JOB1/test-reports/results-p2.xml - |
| 01-Dec-2019 07:36:18 | ===================== 2 failed, 17 passed in 0.40 seconds ====================== |
| 01-Dec-2019 07:36:18 | Failing task since return code of [/home/bamboo/bamboo-agent-home/temp/CATS-PYC2104-JOB1-1-ScriptBuildTask-3519368552053977054.sh] was 1 while expected 0 |
| 01-Dec-2019 07:36:18 | Finished task 'python 2 - pytest' with result: Failed |
| 01-Dec-2019 07:36:18 | Starting task 'test results' of type 'com.atlassian.bamboo.plugins.testresultparser:task.testresultparser.junit' |
| 01-Dec-2019 07:36:18 | Parsing test results under /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC2104-JOB1... |
| 01-Dec-2019 07:36:18 | Failing task since 2 failing test cases were found. |
| 01-Dec-2019 07:36:18 | Finished task 'test results' with result: Failed |
| 01-Dec-2019 07:36:18 | Running post build plugin 'Docker Container Cleanup' |
| 01-Dec-2019 07:36:18 | Running post build plugin 'NCover Results Collector' |
| 01-Dec-2019 07:36:18 | Running post build plugin 'Clover Results Collector' |
| 01-Dec-2019 07:36:18 | Running post build plugin 'npm Cache Cleanup' |
| 01-Dec-2019 07:36:18 | Running post build plugin 'Artifact Copier' |
| 01-Dec-2019 07:36:18 | Finalising the build... |
| 01-Dec-2019 07:36:18 | Stopping timer. |
| 01-Dec-2019 07:36:18 | Build CATS-PYC2104-JOB1-1 completed. |
| 01-Dec-2019 07:36:19 | Running on server: post build plugin 'NCover Results Collector' |
| 01-Dec-2019 07:36:19 | Running on server: post build plugin 'Build Hanging Detection Configuration' |
| 01-Dec-2019 07:36:19 | Running on server: post build plugin 'Clover Delta Calculator' |
| 01-Dec-2019 07:36:19 | Running on server: post build plugin 'Maven Dependencies Postprocessor' |
| 01-Dec-2019 07:36:19 | All post build plugins have finished |
| 01-Dec-2019 07:36:19 | Generating build results summary... |
| 01-Dec-2019 07:36:19 | Saving build results to disk... |
| 01-Dec-2019 07:36:19 | Logging substituted variables... |
| 01-Dec-2019 07:36:19 | Indexing build results... |
| 01-Dec-2019 07:36:19 | Finished building CATS-PYC2104-JOB1-1. |