Next Generation of pyClowder
Build: #1 was successful
Job: Default Job was successful
Build log
The build generated 447 lines of output. Download or view full build log.
18-Jan-2018 08:24:16 | Build Clowder - pyclowder2 - extractor-bugfix - Default Job #1 (CATS-PYC259-JOB1-1) started building on agent buildserver-1.os.ncsa.edu |
18-Jan-2018 08:24:16 | Remote agent on host buildserver-1.os.ncsa.edu |
18-Jan-2018 08:24:16 | Build working directory is /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC259-JOB1 |
18-Jan-2018 08:24:16 | Executing build Clowder - pyclowder2 - extractor-bugfix - Default Job #1 (CATS-PYC259-JOB1-1) |
18-Jan-2018 08:24:16 | Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout' |
18-Jan-2018 08:24:16 | Checking out into /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC259-JOB1 |
18-Jan-2018 08:24:16 | Updating source code to revision: 0360b9801b105619a7f1fe26c579c664e6ac6561 |
18-Jan-2018 08:24:16 | Creating local git repository in '/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC259-JOB1/.git'. |
18-Jan-2018 08:24:16 | Initialized empty Git repository in /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC259-JOB1/.git/ |
18-Jan-2018 08:26:22 | Fetching 'refs/heads/extractor-bugfix' from 'ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git'. Will try to do a shallow fetch. |
18-Jan-2018 08:26:22 | Warning: Permanently added '[127.0.0.1]:46859' (RSA) to the list of known hosts. |
18-Jan-2018 08:26:22 | From ssh://127.0.0.1:46859/cats/pyclowder2 |
18-Jan-2018 08:26:22 | * [new branch] extractor-bugfix -> extractor-bugfix |
18-Jan-2018 08:26:22 | Checking out revision 0360b9801b105619a7f1fe26c579c664e6ac6561. |
18-Jan-2018 08:26:22 | Switched to branch 'extractor-bugfix' |
18-Jan-2018 08:26:22 | Updated source code to revision: 0360b9801b105619a7f1fe26c579c664e6ac6561 |
18-Jan-2018 08:26:22 | Finished task 'Checkout Default Repository' with result: Success |
18-Jan-2018 08:26:22 | Running pre-build action: VCS Version Collector |
18-Jan-2018 08:26:23 | Starting task 'pytest' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script' |
18-Jan-2018 08:26:23 | Beginning to execute external process for build 'Clowder - pyclowder2 - extractor-bugfix - Default Job #1 (CATS-PYC259-JOB1-1)' ... running command line: /home/bamboo/bamboo-agent-home/temp/CATS-PYC259-JOB1-1-ScriptBuildTask-4243091324933931780.sh ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC259-JOB1 ... using extra environment variables: bamboo_planRepository_1_branch=extractor-bugfix bamboo_capability_system_builder_command_npm_6=/home/bamboo/node-v6.9.1/bin/npm bamboo_capability_system_builder_command_buckminster_4_3=/home/bamboo/buckminster-4.3/buckminster bamboo_capability_system_builder_node_Node_js_v6_9_1=/home/bamboo/node-v6.9.1/bin/node bamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster bamboo_repository_155713560_revision_number=0360b9801b105619a7f1fe26c579c664e6ac6561 bamboo_planRepository_1_branchDisplayName=extractor-bugfix bamboo_repository_revision_number=0360b9801b105619a7f1fe26c579c664e6ac6561 bamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-PYC259-JOB1-1 bamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build bamboo_repository_155713560_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git bamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC259-JOB1 bamboo_planRepository_1_name=pyclowder2 bamboo_buildKey=CATS-PYC259-JOB1 bamboo_capability_system_os=linux bamboo_shortPlanName=extractor-bugfix bamboo_planRepository_name=pyclowder2 bamboo_buildNumber=1 bamboo_shortJobName=Default Job bamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-PYC259-JOB1-1 bamboo_planRepository_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git bamboo_agentId=140673027 bamboo_planName=Clowder - 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18-Jan-2018 08:26:23 | New python executable in /tmp/virtualenv/pyclowder2/bin/python2 |
18-Jan-2018 08:26:23 | Also creating executable in /tmp/virtualenv/pyclowder2/bin/python |
18-Jan-2018 08:26:25 | Installing setuptools, pkg_resources, pip, wheel...done. |
18-Jan-2018 08:26:25 | Running virtualenv with interpreter /usr/bin/python2 |
18-Jan-2018 08:26:26 | Collecting enum34==1.1.6 (from -r requirements.txt (line 1)) |
18-Jan-2018 08:26:26 | Using cached enum34-1.1.6-py2-none-any.whl |
18-Jan-2018 08:26:26 | Collecting pika==0.10.0 (from -r requirements.txt (line 2)) |
18-Jan-2018 08:26:26 | Using cached pika-0.10.0-py2.py3-none-any.whl |
18-Jan-2018 08:26:26 | Collecting PyYAML==3.11 (from -r requirements.txt (line 3)) |
18-Jan-2018 08:26:26 | Collecting requests==2.10.0 (from -r requirements.txt (line 4)) |
18-Jan-2018 08:26:26 | Using cached requests-2.10.0-py2.py3-none-any.whl |
18-Jan-2018 08:26:26 | Collecting wheel==0.24.0 (from -r requirements.txt (line 5)) |
18-Jan-2018 08:26:26 | Using cached wheel-0.24.0-py2.py3-none-any.whl |
18-Jan-2018 08:26:26 | Collecting pytest==3.0.3 (from -r requirements.txt (line 6)) |
18-Jan-2018 08:26:26 | Using cached pytest-3.0.3-py2.py3-none-any.whl |
18-Jan-2018 08:26:27 | Collecting pytest-pep8==1.0.6 (from -r requirements.txt (line 7)) |
18-Jan-2018 08:26:27 | Collecting urllib3==1.14 (from -r requirements.txt (line 8)) |
18-Jan-2018 08:26:27 | Using cached urllib3-1.14-py2.py3-none-any.whl |
18-Jan-2018 08:26:27 | Collecting py>=1.4.29 (from pytest==3.0.3->-r requirements.txt (line 6)) |
18-Jan-2018 08:26:27 | Using cached py-1.5.2-py2.py3-none-any.whl |
18-Jan-2018 08:26:27 | Collecting pep8>=1.3 (from pytest-pep8==1.0.6->-r requirements.txt (line 7)) |
18-Jan-2018 08:26:27 | Using cached pep8-1.7.1-py2.py3-none-any.whl |
18-Jan-2018 08:26:27 | Collecting pytest-cache (from pytest-pep8==1.0.6->-r requirements.txt (line 7)) |
18-Jan-2018 08:26:27 | Collecting execnet>=1.1.dev1 (from pytest-cache->pytest-pep8==1.0.6->-r requirements.txt (line 7)) |
18-Jan-2018 08:26:27 | Using cached execnet-1.5.0-py2.py3-none-any.whl |
18-Jan-2018 08:26:27 | Collecting apipkg>=1.4 (from execnet>=1.1.dev1->pytest-cache->pytest-pep8==1.0.6->-r requirements.txt (line 7)) |
18-Jan-2018 08:26:27 | Using cached apipkg-1.4-py2.py3-none-any.whl |
18-Jan-2018 08:26:27 | Installing collected packages: enum34, pika, PyYAML, requests, wheel, py, pytest, pep8, apipkg, execnet, pytest-cache, pytest-pep8, urllib3 |
18-Jan-2018 08:26:27 | Found existing installation: wheel 0.30.0 |
18-Jan-2018 08:26:27 | Uninstalling wheel-0.30.0: |
18-Jan-2018 08:26:27 | Successfully uninstalled wheel-0.30.0 |
18-Jan-2018 08:26:28 | Successfully installed PyYAML-3.11 apipkg-1.4 enum34-1.1.6 execnet-1.5.0 pep8-1.7.1 pika-0.10.0 py-1.5.2 pytest-3.0.3 pytest-cache-1.0 pytest-pep8-1.0.6 requests-2.10.0 urllib3-1.14 wheel-0.24.0 |
18-Jan-2018 08:26:28 | ============================= test session starts ============================== |
18-Jan-2018 08:26:28 | platform linux2 -- Python 2.7.12, pytest-3.0.3, py-1.5.2, pluggy-0.4.0 |
18-Jan-2018 08:26:28 | rootdir: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC259-JOB1, inifile: setup.cfg |
18-Jan-2018 08:26:28 | plugins: pep8-1.0.6 |
18-Jan-2018 08:26:28 | collected 15 items |
18-Jan-2018 08:26:28 | |
18-Jan-2018 08:26:28 | setup.py . |
18-Jan-2018 08:26:28 | docs/source/conf.py . |
18-Jan-2018 08:26:28 | pyclowder/__init__.py . |
18-Jan-2018 08:26:28 | pyclowder/client.py . |
18-Jan-2018 08:26:28 | pyclowder/collections.py . |
18-Jan-2018 08:26:28 | pyclowder/connectors.py . |
18-Jan-2018 08:26:28 | pyclowder/datasets.py . |
18-Jan-2018 08:26:28 | pyclowder/extractors.py . |
18-Jan-2018 08:26:28 | pyclowder/files.py . |
18-Jan-2018 08:26:28 | pyclowder/geostreams.py . |
18-Jan-2018 08:26:28 | pyclowder/sections.py . |
18-Jan-2018 08:26:28 | pyclowder/utils.py . |
18-Jan-2018 08:26:28 | sample-extractors/echo/echo.py . |
18-Jan-2018 08:26:28 | sample-extractors/wordcount/wordcount.py . |
18-Jan-2018 08:26:28 | tests/clientTest.py . |
18-Jan-2018 08:26:28 | |
18-Jan-2018 08:26:28 | generated xml file: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC259-JOB1/test-reports/results.xml |
18-Jan-2018 08:26:28 | ========================== 15 passed in 0.32 seconds =========================== |
18-Jan-2018 08:26:28 | Finished task 'pytest' with result: Success |
18-Jan-2018 08:26:28 | Starting task 'docker build and push' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script' |
18-Jan-2018 08:26:28 | Beginning to execute external process for build 'Clowder - pyclowder2 - extractor-bugfix - Default Job #1 (CATS-PYC259-JOB1-1)' ... running command line: /bin/sh docker.sh ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC259-JOB1 ... using extra environment variables: bamboo_planRepository_1_branch=extractor-bugfix bamboo_capability_system_builder_command_npm_6=/home/bamboo/node-v6.9.1/bin/npm bamboo_capability_system_builder_command_buckminster_4_3=/home/bamboo/buckminster-4.3/buckminster bamboo_capability_system_builder_node_Node_js_v6_9_1=/home/bamboo/node-v6.9.1/bin/node bamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster bamboo_repository_155713560_revision_number=0360b9801b105619a7f1fe26c579c664e6ac6561 bamboo_planRepository_1_branchDisplayName=extractor-bugfix bamboo_repository_revision_number=0360b9801b105619a7f1fe26c579c664e6ac6561 bamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-PYC259-JOB1-1 bamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build bamboo_repository_155713560_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git bamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC259-JOB1 bamboo_planRepository_1_name=pyclowder2 bamboo_buildKey=CATS-PYC259-JOB1 bamboo_capability_system_os=linux bamboo_shortPlanName=extractor-bugfix bamboo_planRepository_name=pyclowder2 bamboo_buildNumber=1 bamboo_shortJobName=Default Job bamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-PYC259-JOB1-1 bamboo_planRepository_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git bamboo_agentId=140673027 bamboo_planName=Clowder - pyclowder2 - extractor-bugfix bamboo_shortPlanKey=PYC259 bamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt bamboo_capability_system_builder_node_Node_js_v0_10_28=/home/bamboo/node-v0.10.28/bin/node bamboo_shortJobKey=JOB1 bamboo_planRepository_revision=0360b9801b105619a7f1fe26c579c664e6ac6561 bamboo_buildTimeStamp=2018-01-18T08:24:15.692-06:00 bamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm bamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1 bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_script_3=/home/bamboo/bamboo-agent-home/temp/CATS-PYC259-JOB1-1-ScriptBuildTask-4243091324933931780.sh bamboo_repository_git_branch=extractor-bugfix bamboo_buildResultKey=CATS-PYC259-JOB1-1 bamboo_repository_branch_name=extractor-bugfix bamboo_buildPlanName=Clowder - pyclowder2 - extractor-bugfix - Default Job bamboo_planRepository_1_revision=0360b9801b105619a7f1fe26c579c664e6ac6561 bamboo_repository_155713560_branch_name=extractor-bugfix bamboo_capability_system_builder_command_python3=/usr/bin/python3 bamboo_repository_name=pyclowder2 bamboo_repository_155713560_git_branch=extractor-bugfix bamboo_repository_155713560_git_username= bamboo_repository_155713560_name=pyclowder2 bamboo_buildFailed=false bamboo_capability_system_docker_executable=/usr/bin/docker bamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt bamboo_planRepository_branch=extractor-bugfix bamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir bamboo_capability_system_git_executable=/usr/bin/git bamboo_repository_git_username= bamboo_capability_system_builder_sbt_SBT_0_13_13=/home/bamboo/sbt-0.13.13 bamboo_planRepository_branchDisplayName=extractor-bugfix bamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs bamboo_planRepository_1_type=bbserver bamboo_planRepository_branchName=extractor-bugfix bamboo_capability_system_builder_command_python2_7=/usr/bin/python2.7 bamboo_capability_system_hostname=buildserver-1 bamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.8.0_66 bamboo_capability_system_software_mongo=/usr/bin/mongo bamboo_plan_storageTag=plan-155516975 bamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs bamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl bamboo_capability_system_jdk_JDK_1_8_0_66=/home/bamboo/jdk1.8.0_66 bamboo_planRepository_1_username= bamboo_planRepository_type=bbserver bamboo_repository_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git bamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node bamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4 bamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.3.9 bamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC259-JOB1 bamboo_planKey=CATS-PYC259 bamboo_planRepository_1_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git bamboo_planRepository_username= bamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_66 bamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41 bamboo_capability_system_builder_command_mkcrx=/home/bamboo/mkcrx/mkcrx.sh bamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60 bamboo_planRepository_1_branchName=extractor-bugfix |
18-Jan-2018 08:26:28 | Sending build context to Docker daemon 167.9 kB |
18-Jan-2018 08:26:28 | |
18-Jan-2018 08:26:28 | Step 1/6 : FROM ubuntu:16.04 |
18-Jan-2018 08:26:29 | 16.04: Pulling from library/ubuntu |
18-Jan-2018 08:26:29 | 8f7c85c2269a: Pulling fs layer |
18-Jan-2018 08:26:29 | 9e72e494a6dd: Pulling fs layer |
18-Jan-2018 08:26:29 | 3009ec50c887: Pulling fs layer |
18-Jan-2018 08:26:29 | 9d5ffccbec91: Pulling fs layer |
18-Jan-2018 08:26:29 | e872a2642ce1: Pulling fs layer |
18-Jan-2018 08:26:29 | 9d5ffccbec91: Waiting |
18-Jan-2018 08:26:29 | e872a2642ce1: Waiting |
18-Jan-2018 08:26:29 | 3009ec50c887: Download complete |
18-Jan-2018 08:26:29 | 9e72e494a6dd: Download complete |
18-Jan-2018 08:26:29 | 9d5ffccbec91: Download complete |
18-Jan-2018 08:26:29 | e872a2642ce1: Verifying Checksum |
18-Jan-2018 08:26:29 | e872a2642ce1: Download complete |
18-Jan-2018 08:26:31 | 8f7c85c2269a: Verifying Checksum |
18-Jan-2018 08:26:31 | 8f7c85c2269a: Download complete |
18-Jan-2018 08:26:33 | 8f7c85c2269a: Pull complete |
18-Jan-2018 08:26:34 | 9e72e494a6dd: Pull complete |
18-Jan-2018 08:26:34 | 3009ec50c887: Pull complete |
18-Jan-2018 08:26:34 | 9d5ffccbec91: Pull complete |
18-Jan-2018 08:26:35 | e872a2642ce1: Pull complete |
18-Jan-2018 08:26:35 | Digest: sha256:d3fdf5b1f8e8a155c17d5786280af1f5a04c10e95145a515279cf17abdf0191f |
18-Jan-2018 08:26:35 | Status: Downloaded newer image for ubuntu:16.04 |
18-Jan-2018 08:26:35 | ---> 2a4cca5ac898 |
18-Jan-2018 08:26:35 | Step 2/6 : MAINTAINER Rob Kooper <kooper@illinois.edu> |
18-Jan-2018 08:26:35 | ---> Running in 711b0dd6e192 |
18-Jan-2018 08:26:35 | ---> efa6ce59fdd3 |
18-Jan-2018 08:26:35 | Removing intermediate container 711b0dd6e192 |
18-Jan-2018 08:26:35 | Step 3/6 : RUN apt-get -q -q update && apt-get install -y --no-install-recommends netcat python python-pip && pip install --upgrade setuptools && rm -rf /var/lib/apt/lists/* && adduser --system clowder |
18-Jan-2018 08:26:35 | ---> Running in 3ac6f3ff18a0 |
18-Jan-2018 08:26:41 | Reading package lists... |
18-Jan-2018 08:26:41 | Building dependency tree... |
18-Jan-2018 08:26:41 | Reading state information... |
18-Jan-2018 08:26:41 | The following additional packages will be installed: |
18-Jan-2018 08:26:41 | ca-certificates libexpat1 libffi6 libpython-stdlib libpython2.7-minimal |
18-Jan-2018 08:26:41 | libpython2.7-stdlib libsqlite3-0 libssl1.0.0 mime-support netcat-traditional |
18-Jan-2018 08:26:41 | openssl python-minimal python-pip-whl python2.7 python2.7-minimal |
18-Jan-2018 08:26:41 | Suggested packages: |
18-Jan-2018 08:26:41 | python-doc python-tk python2.7-doc binutils binfmt-support |
18-Jan-2018 08:26:41 | Recommended packages: |
18-Jan-2018 08:26:41 | file build-essential python-all-dev python-setuptools python-wheel |
18-Jan-2018 08:26:41 | The following NEW packages will be installed: |
18-Jan-2018 08:26:41 | ca-certificates libexpat1 libffi6 libpython-stdlib libpython2.7-minimal |
18-Jan-2018 08:26:41 | libpython2.7-stdlib libsqlite3-0 libssl1.0.0 mime-support netcat |
18-Jan-2018 08:26:41 | netcat-traditional openssl python python-minimal python-pip python-pip-whl |
18-Jan-2018 08:26:41 | python2.7 python2.7-minimal |
18-Jan-2018 08:26:41 | 0 upgraded, 18 newly installed, 0 to remove and 3 not upgraded. |
18-Jan-2018 08:26:41 | Need to get 7454 kB of archives. |
18-Jan-2018 08:26:41 | After this operation, 25.0 MB of additional disk space will be used. |
18-Jan-2018 08:26:41 | Get:1 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpython2.7-minimal amd64 2.7.12-1ubuntu0~16.04.3 [340 kB] |
18-Jan-2018 08:26:42 | Get:2 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 python2.7-minimal amd64 2.7.12-1ubuntu0~16.04.3 [1261 kB] |
18-Jan-2018 08:26:42 | Get:3 http://archive.ubuntu.com/ubuntu xenial/main amd64 python-minimal amd64 2.7.11-1 [28.2 kB] |
18-Jan-2018 08:26:42 | Get:4 http://archive.ubuntu.com/ubuntu xenial/main amd64 mime-support all 3.59ubuntu1 [31.0 kB] |
18-Jan-2018 08:26:42 | Get:5 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libexpat1 amd64 2.1.0-7ubuntu0.16.04.3 [71.2 kB] |
18-Jan-2018 08:26:42 | Get:6 http://archive.ubuntu.com/ubuntu xenial/main amd64 libffi6 amd64 3.2.1-4 [17.8 kB] |
18-Jan-2018 08:26:42 | Get:7 http://archive.ubuntu.com/ubuntu xenial/main amd64 libsqlite3-0 amd64 3.11.0-1ubuntu1 [396 kB] |
18-Jan-2018 08:26:42 | Get:8 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libssl1.0.0 amd64 1.0.2g-1ubuntu4.10 [1083 kB] |
18-Jan-2018 08:26:42 | Get:9 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpython2.7-stdlib amd64 2.7.12-1ubuntu0~16.04.3 [1880 kB] |
18-Jan-2018 08:26:42 | Get:10 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 python2.7 amd64 2.7.12-1ubuntu0~16.04.3 [224 kB] |
18-Jan-2018 08:26:42 | Get:11 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpython-stdlib amd64 2.7.11-1 [7656 B] |
18-Jan-2018 08:26:42 | Get:12 http://archive.ubuntu.com/ubuntu xenial/main amd64 python amd64 2.7.11-1 [137 kB] |
18-Jan-2018 08:26:42 | Get:13 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 openssl amd64 1.0.2g-1ubuntu4.10 [492 kB] |
18-Jan-2018 08:26:42 | Get:14 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 ca-certificates all 20170717~16.04.1 [168 kB] |
18-Jan-2018 08:26:42 | Get:15 http://archive.ubuntu.com/ubuntu xenial/universe amd64 netcat-traditional amd64 1.10-41 [60.7 kB] |
18-Jan-2018 08:26:42 | Get:16 http://archive.ubuntu.com/ubuntu xenial/universe amd64 netcat all 1.10-41 [3438 B] |
18-Jan-2018 08:26:42 | Get:17 http://archive.ubuntu.com/ubuntu xenial-updates/universe amd64 python-pip-whl all 8.1.1-2ubuntu0.4 [1110 kB] |
18-Jan-2018 08:26:42 | Get:18 http://archive.ubuntu.com/ubuntu xenial-updates/universe amd64 python-pip all 8.1.1-2ubuntu0.4 [144 kB] |
18-Jan-2018 08:26:42 | debconf: delaying package configuration, since apt-utils is not installed |
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18-Jan-2018 08:26:42 | Selecting previously unselected package libpython2.7-minimal:amd64. |
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18-Jan-2018 08:26:42 | Preparing to unpack .../libpython2.7-minimal_2.7.12-1ubuntu0~16.04.3_amd64.deb ... |
18-Jan-2018 08:26:43 | Unpacking libpython2.7-minimal:amd64 (2.7.12-1ubuntu0~16.04.3) ... |
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18-Jan-2018 08:26:49 | Linking and byte-compiling packages for runtime python2.7... |
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18-Jan-2018 08:26:52 | Selecting previously unselected package python-pip-whl. |
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18-Jan-2018 08:26:53 | Setting up mime-support (3.59ubuntu1) ... |
18-Jan-2018 08:26:53 | Setting up libexpat1:amd64 (2.1.0-7ubuntu0.16.04.3) ... |
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18-Jan-2018 08:26:54 | Setting up libsqlite3-0:amd64 (3.11.0-1ubuntu1) ... |
18-Jan-2018 08:26:54 | Setting up libssl1.0.0:amd64 (1.0.2g-1ubuntu4.10) ... |
18-Jan-2018 08:26:54 | debconf: unable to initialize frontend: Dialog |
18-Jan-2018 08:26:54 | debconf: (TERM is not set, so the dialog frontend is not usable.) |
18-Jan-2018 08:26:54 | debconf: falling back to frontend: Readline |
18-Jan-2018 08:26:54 | debconf: unable to initialize frontend: Readline |
18-Jan-2018 08:26:54 | debconf: (Can't locate Term/ReadLine.pm in @INC (you may need to install the Term::ReadLine module) (@INC contains: /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.22.1 /usr/local/share/perl/5.22.1 /usr/lib/x86_64-linux-gnu/perl5/5.22 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl/5.22 /usr/share/perl/5.22 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base .) at /usr/share/perl5/Debconf/FrontEnd/Readline.pm line 7.) |
18-Jan-2018 08:26:54 | debconf: falling back to frontend: Teletype |
18-Jan-2018 08:26:54 | Setting up libpython2.7-stdlib:amd64 (2.7.12-1ubuntu0~16.04.3) ... |
18-Jan-2018 08:26:54 | Setting up python2.7 (2.7.12-1ubuntu0~16.04.3) ... |
18-Jan-2018 08:26:55 | Setting up libpython-stdlib:amd64 (2.7.11-1) ... |
18-Jan-2018 08:26:55 | Setting up python (2.7.11-1) ... |
18-Jan-2018 08:26:56 | Setting up openssl (1.0.2g-1ubuntu4.10) ... |
18-Jan-2018 08:26:56 | Setting up ca-certificates (20170717~16.04.1) ... |
18-Jan-2018 08:26:57 | debconf: unable to initialize frontend: Dialog |
18-Jan-2018 08:26:57 | debconf: (TERM is not set, so the dialog frontend is not usable.) |
18-Jan-2018 08:26:57 | debconf: falling back to frontend: Readline |
18-Jan-2018 08:26:57 | debconf: unable to initialize frontend: Readline |
18-Jan-2018 08:26:57 | debconf: (Can't locate Term/ReadLine.pm in @INC (you may need to install the Term::ReadLine module) (@INC contains: /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.22.1 /usr/local/share/perl/5.22.1 /usr/lib/x86_64-linux-gnu/perl5/5.22 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl/5.22 /usr/share/perl/5.22 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base .) at /usr/share/perl5/Debconf/FrontEnd/Readline.pm line 7.) |
18-Jan-2018 08:26:57 | debconf: falling back to frontend: Teletype |
18-Jan-2018 08:26:57 | Setting up netcat-traditional (1.10-41) ... |
18-Jan-2018 08:26:57 | update-alternatives: using /bin/nc.traditional to provide /bin/nc (nc) in auto mode |
18-Jan-2018 08:26:57 | Setting up netcat (1.10-41) ... |
18-Jan-2018 08:26:58 | Setting up python-pip-whl (8.1.1-2ubuntu0.4) ... |
18-Jan-2018 08:26:58 | Setting up python-pip (8.1.1-2ubuntu0.4) ... |
18-Jan-2018 08:26:59 | Processing triggers for libc-bin (2.23-0ubuntu9) ... |
18-Jan-2018 08:26:59 | Processing triggers for ca-certificates (20170717~16.04.1) ... |
18-Jan-2018 08:26:59 | Updating certificates in /etc/ssl/certs... |
18-Jan-2018 08:27:00 | 148 added, 0 removed; done. |
18-Jan-2018 08:27:00 | Running hooks in /etc/ca-certificates/update.d... |
18-Jan-2018 08:27:00 | done. |
18-Jan-2018 08:27:01 | Collecting setuptools |
18-Jan-2018 08:27:02 | Downloading setuptools-38.4.0-py2.py3-none-any.whl (489kB) |
18-Jan-2018 08:27:02 | Installing collected packages: setuptools |
18-Jan-2018 08:27:02 | Successfully installed setuptools-38.4.0 |
18-Jan-2018 08:27:02 | You are using pip version 8.1.1, however version 9.0.1 is available. |
18-Jan-2018 08:27:02 | You should consider upgrading via the 'pip install --upgrade pip' command. |
18-Jan-2018 08:27:02 | Adding system user `clowder' (UID 105) ... |
18-Jan-2018 08:27:02 | Adding new user `clowder' (UID 105) with group `nogroup' ... |
18-Jan-2018 08:27:03 | Creating home directory `/home/clowder' ... |
18-Jan-2018 08:27:04 | ---> f84f97e925dd |
18-Jan-2018 08:27:04 | Removing intermediate container 3ac6f3ff18a0 |
18-Jan-2018 08:27:04 | Step 4/6 : COPY pyclowder /tmp/pyclowder/pyclowder |
18-Jan-2018 08:27:05 | ---> 1b34f852dab2 |
18-Jan-2018 08:27:05 | Removing intermediate container 6a05fe255132 |
18-Jan-2018 08:27:05 | Step 5/6 : COPY setup.py requirements.txt /tmp/pyclowder/ |
18-Jan-2018 08:27:05 | ---> 9a97eb248cae |
18-Jan-2018 08:27:05 | Removing intermediate container 0e6b056a406e |
18-Jan-2018 08:27:05 | Step 6/6 : RUN pip install --upgrade -r /tmp/pyclowder/requirements.txt && pip install --upgrade /tmp/pyclowder && rm -rf /tmp/pyclowder |
18-Jan-2018 08:27:06 | ---> Running in 72577f61ae30 |
18-Jan-2018 08:27:07 | Collecting enum34==1.1.6 (from -r /tmp/pyclowder/requirements.txt (line 1)) |
18-Jan-2018 08:27:07 | Downloading enum34-1.1.6-py2-none-any.whl |
18-Jan-2018 08:27:07 | Collecting pika==0.10.0 (from -r /tmp/pyclowder/requirements.txt (line 2)) |
18-Jan-2018 08:27:07 | Downloading pika-0.10.0-py2.py3-none-any.whl (92kB) |
18-Jan-2018 08:27:07 | Collecting PyYAML==3.11 (from -r /tmp/pyclowder/requirements.txt (line 3)) |
18-Jan-2018 08:27:07 | Downloading PyYAML-3.11.zip (371kB) |
18-Jan-2018 08:27:08 | Collecting requests==2.10.0 (from -r /tmp/pyclowder/requirements.txt (line 4)) |
18-Jan-2018 08:27:08 | Downloading requests-2.10.0-py2.py3-none-any.whl (506kB) |
18-Jan-2018 08:27:08 | Collecting wheel==0.24.0 (from -r /tmp/pyclowder/requirements.txt (line 5)) |
18-Jan-2018 08:27:08 | Downloading wheel-0.24.0-py2.py3-none-any.whl (63kB) |
18-Jan-2018 08:27:08 | Collecting pytest==3.0.3 (from -r /tmp/pyclowder/requirements.txt (line 6)) |
18-Jan-2018 08:27:08 | Downloading pytest-3.0.3-py2.py3-none-any.whl (169kB) |
18-Jan-2018 08:27:08 | Collecting pytest-pep8==1.0.6 (from -r /tmp/pyclowder/requirements.txt (line 7)) |
18-Jan-2018 08:27:08 | Downloading pytest-pep8-1.0.6.tar.gz |
18-Jan-2018 08:27:08 | Collecting urllib3==1.14 (from -r /tmp/pyclowder/requirements.txt (line 8)) |
18-Jan-2018 08:27:08 | Downloading urllib3-1.14-py2.py3-none-any.whl (89kB) |
18-Jan-2018 08:27:08 | Collecting py>=1.4.29 (from pytest==3.0.3->-r /tmp/pyclowder/requirements.txt (line 6)) |
18-Jan-2018 08:27:08 | Downloading py-1.5.2-py2.py3-none-any.whl (88kB) |
18-Jan-2018 08:27:08 | Collecting pytest-cache (from pytest-pep8==1.0.6->-r /tmp/pyclowder/requirements.txt (line 7)) |
18-Jan-2018 08:27:08 | Downloading pytest-cache-1.0.tar.gz |
18-Jan-2018 08:27:09 | Collecting pep8>=1.3 (from pytest-pep8==1.0.6->-r /tmp/pyclowder/requirements.txt (line 7)) |
18-Jan-2018 08:27:09 | Downloading pep8-1.7.1-py2.py3-none-any.whl (41kB) |
18-Jan-2018 08:27:09 | Collecting execnet>=1.1.dev1 (from pytest-cache->pytest-pep8==1.0.6->-r /tmp/pyclowder/requirements.txt (line 7)) |
18-Jan-2018 08:27:09 | Downloading execnet-1.5.0-py2.py3-none-any.whl |
18-Jan-2018 08:27:09 | Collecting apipkg>=1.4 (from execnet>=1.1.dev1->pytest-cache->pytest-pep8==1.0.6->-r /tmp/pyclowder/requirements.txt (line 7)) |
18-Jan-2018 08:27:09 | Downloading apipkg-1.4-py2.py3-none-any.whl |
18-Jan-2018 08:27:09 | Building wheels for collected packages: PyYAML, pytest-pep8, pytest-cache |
18-Jan-2018 08:27:09 | Running setup.py bdist_wheel for PyYAML: started |
18-Jan-2018 08:27:09 | Running setup.py bdist_wheel for PyYAML: finished with status 'error' |
18-Jan-2018 08:27:09 | Complete output from command /usr/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-Oygyro/PyYAML/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" bdist_wheel -d /tmp/tmp2m4Ahkpip-wheel- --python-tag cp27: |
18-Jan-2018 08:27:09 | usage: -c [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...] |
18-Jan-2018 08:27:09 | or: -c --help [cmd1 cmd2 ...] |
18-Jan-2018 08:27:09 | or: -c --help-commands |
18-Jan-2018 08:27:09 | or: -c cmd --help |
18-Jan-2018 08:27:09 | |
18-Jan-2018 08:27:09 | error: invalid command 'bdist_wheel' |
18-Jan-2018 08:27:09 | |
18-Jan-2018 08:27:09 | ---------------------------------------- |
18-Jan-2018 08:27:09 | Running setup.py clean for PyYAML |
18-Jan-2018 08:27:09 | Failed building wheel for PyYAML |
18-Jan-2018 08:27:09 | Running setup.py bdist_wheel for pytest-pep8: started |
18-Jan-2018 08:27:09 | Running setup.py bdist_wheel for pytest-pep8: finished with status 'error' |
18-Jan-2018 08:27:09 | Complete output from command /usr/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-Oygyro/pytest-pep8/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" bdist_wheel -d /tmp/tmpAg75uypip-wheel- --python-tag cp27: |
18-Jan-2018 08:27:09 | usage: -c [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...] |
18-Jan-2018 08:27:09 | or: -c --help [cmd1 cmd2 ...] |
18-Jan-2018 08:27:09 | or: -c --help-commands |
18-Jan-2018 08:27:09 | or: -c cmd --help |
18-Jan-2018 08:27:09 | |
18-Jan-2018 08:27:09 | error: invalid command 'bdist_wheel' |
18-Jan-2018 08:27:09 | |
18-Jan-2018 08:27:09 | ---------------------------------------- |
18-Jan-2018 08:27:09 | Running setup.py clean for pytest-pep8 |
18-Jan-2018 08:27:09 | Failed building wheel for pytest-pep8 |
18-Jan-2018 08:27:09 | Running setup.py bdist_wheel for pytest-cache: started |
18-Jan-2018 08:27:09 | Running setup.py bdist_wheel for pytest-cache: finished with status 'error' |
18-Jan-2018 08:27:09 | Complete output from command /usr/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-Oygyro/pytest-cache/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" bdist_wheel -d /tmp/tmpEhQStdpip-wheel- --python-tag cp27: |
18-Jan-2018 08:27:09 | usage: -c [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...] |
18-Jan-2018 08:27:09 | or: -c --help [cmd1 cmd2 ...] |
18-Jan-2018 08:27:09 | or: -c --help-commands |
18-Jan-2018 08:27:09 | or: -c cmd --help |
18-Jan-2018 08:27:09 | |
18-Jan-2018 08:27:09 | error: invalid command 'bdist_wheel' |
18-Jan-2018 08:27:09 | |
18-Jan-2018 08:27:09 | ---------------------------------------- |
18-Jan-2018 08:27:09 | Failed building wheel for pytest-cache |
18-Jan-2018 08:27:09 | Running setup.py clean for pytest-cache |
18-Jan-2018 08:27:09 | Failed to build PyYAML pytest-pep8 pytest-cache |
18-Jan-2018 08:27:09 | Installing collected packages: enum34, pika, PyYAML, requests, wheel, py, pytest, apipkg, execnet, pytest-cache, pep8, pytest-pep8, urllib3 |
18-Jan-2018 08:27:10 | Running setup.py install for PyYAML: started |
18-Jan-2018 08:27:10 | Running setup.py install for PyYAML: finished with status 'done' |
18-Jan-2018 08:27:10 | Running setup.py install for pytest-cache: started |
18-Jan-2018 08:27:10 | Running setup.py install for pytest-cache: finished with status 'done' |
18-Jan-2018 08:27:10 | Running setup.py install for pytest-pep8: started |
18-Jan-2018 08:27:11 | Running setup.py install for pytest-pep8: finished with status 'done' |
18-Jan-2018 08:27:11 | Successfully installed PyYAML-3.11 apipkg-1.4 enum34-1.1.6 execnet-1.5.0 pep8-1.7.1 pika-0.10.0 py-1.5.2 pytest-3.0.3 pytest-cache-1.0 pytest-pep8-1.0.6 requests-2.10.0 urllib3-1.14 wheel-0.24.0 |
18-Jan-2018 08:27:11 | You are using pip version 8.1.1, however version 9.0.1 is available. |
18-Jan-2018 08:27:11 | You should consider upgrading via the 'pip install --upgrade pip' command. |
18-Jan-2018 08:27:12 | Processing /tmp/pyclowder |
18-Jan-2018 08:27:12 | Installing collected packages: pyclowder |
18-Jan-2018 08:27:12 | Running setup.py install for pyclowder: started |
18-Jan-2018 08:27:12 | Running setup.py install for pyclowder: finished with status 'done' |
18-Jan-2018 08:27:12 | Successfully installed pyclowder-2.0.0 |
18-Jan-2018 08:27:12 | You are using pip version 8.1.1, however version 9.0.1 is available. |
18-Jan-2018 08:27:12 | You should consider upgrading via the 'pip install --upgrade pip' command. |
18-Jan-2018 08:27:13 | ---> 494e8185d5cf |
18-Jan-2018 08:27:13 | Removing intermediate container 72577f61ae30 |
18-Jan-2018 08:27:13 | Successfully built 494e8185d5cf |
18-Jan-2018 08:27:13 | Untagged: 1826:latest |
18-Jan-2018 08:27:13 | Sending build context to Docker daemon 11.78 kB |
18-Jan-2018 08:27:13 | |
18-Jan-2018 08:27:13 | Step 1/7 : FROM clowder/pyclowder:2 |
18-Jan-2018 08:27:13 | ---> 494e8185d5cf |
18-Jan-2018 08:27:13 | Step 2/7 : MAINTAINER Rob Kooper <kooper@illinois.edu> |
18-Jan-2018 08:27:13 | ---> Running in 46afc3d66fbd |
18-Jan-2018 08:27:14 | ---> a13e52e9a97e |
18-Jan-2018 08:27:14 | Removing intermediate container 46afc3d66fbd |
18-Jan-2018 08:27:14 | Step 3/7 : ENV RABBITMQ_URI "" RABBITMQ_EXCHANGE "clowder" RABBITMQ_QUEUE "ncsa.wordcount" REGISTRATION_ENDPOINTS "https://clowder.ncsa.illinois.edu/extractors" MAIN_SCRIPT "wordcount.py" |
18-Jan-2018 08:27:14 | ---> Running in 648ec73d701a |
18-Jan-2018 08:27:14 | ---> d6ffd6e6c8cc |
18-Jan-2018 08:27:14 | Removing intermediate container 648ec73d701a |
18-Jan-2018 08:27:14 | Step 4/7 : USER clowder |
18-Jan-2018 08:27:14 | ---> Running in 8946c5ce165e |
18-Jan-2018 08:27:15 | ---> 92f0d3e96b0a |
18-Jan-2018 08:27:15 | Removing intermediate container 8946c5ce165e |
18-Jan-2018 08:27:15 | Step 5/7 : COPY entrypoint.sh *.py extractor_info.json /home/clowder/ |
18-Jan-2018 08:27:15 | ---> 185bf332d319 |
18-Jan-2018 08:27:15 | Removing intermediate container f8b38f5bcd92 |
18-Jan-2018 08:27:15 | Step 6/7 : ENTRYPOINT /home/clowder/entrypoint.sh |
18-Jan-2018 08:27:15 | ---> Running in f17cc2133f33 |
18-Jan-2018 08:27:16 | ---> 41845417efe0 |
18-Jan-2018 08:27:16 | Removing intermediate container f17cc2133f33 |
18-Jan-2018 08:27:16 | Step 7/7 : CMD extractor |
18-Jan-2018 08:27:16 | ---> Running in be4d43d3b891 |
18-Jan-2018 08:27:16 | ---> 5e33b36ed61d |
18-Jan-2018 08:27:16 | Removing intermediate container be4d43d3b891 |
18-Jan-2018 08:27:16 | Successfully built 5e33b36ed61d |
18-Jan-2018 08:27:16 | Untagged: 1826:latest |
18-Jan-2018 08:27:16 | Untagged: clowder/pyclowder:latest |
18-Jan-2018 08:27:16 | Untagged: clowder/extractors-wordcount:latest |
18-Jan-2018 08:27:16 | Finished task 'docker build and push' with result: Success |
18-Jan-2018 08:27:16 | Starting task 'test results' of type 'com.atlassian.bamboo.plugins.testresultparser:task.testresultparser.junit' |
18-Jan-2018 08:27:16 | Parsing test results under /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC259-JOB1... |
18-Jan-2018 08:27:16 | Finished task 'test results' with result: Success |
18-Jan-2018 08:27:16 | Running post build plugin 'Docker Container Cleanup' |
18-Jan-2018 08:27:16 | Running post build plugin 'NCover Results Collector' |
18-Jan-2018 08:27:16 | Running post build plugin 'Clover Results Collector' |
18-Jan-2018 08:27:16 | Running post build plugin 'npm Cache Cleanup' |
18-Jan-2018 08:27:17 | Running post build plugin 'Artifact Copier' |
18-Jan-2018 08:27:17 | Finalising the build... |
18-Jan-2018 08:27:17 | Stopping timer. |
18-Jan-2018 08:27:17 | Build CATS-PYC259-JOB1-1 completed. |
18-Jan-2018 08:27:17 | Running on server: post build plugin 'NCover Results Collector' |
18-Jan-2018 08:27:17 | Running on server: post build plugin 'Build Hanging Detection Configuration' |
18-Jan-2018 08:27:17 | Running on server: post build plugin 'Clover Delta Calculator' |
18-Jan-2018 08:27:17 | Running on server: post build plugin 'Maven Dependencies Postprocessor' |
18-Jan-2018 08:27:17 | All post build plugins have finished |
18-Jan-2018 08:27:17 | Generating build results summary... |
18-Jan-2018 08:27:17 | Saving build results to disk... |
18-Jan-2018 08:27:17 | Logging substituted variables... |
18-Jan-2018 08:27:17 | Indexing build results... |
18-Jan-2018 08:27:17 | Finished building CATS-PYC259-JOB1-1. |