Next Generation of pyClowder
Build: #20 was successful
Job: Default Job was successful
Build log
The build generated 2,406 lines of output. The output is too long and has been truncated to the last 1,000 lines. Download or view full build log.
| 22-May-2019 15:13:32 | Preparing to unpack .../libpcre32-3_2%3a8.38-3.1_amd64.deb ... |
| 22-May-2019 15:13:32 | Unpacking libpcre32-3:amd64 (2:8.38-3.1) ... |
| 22-May-2019 15:13:33 | Selecting previously unselected package libpcre3-dev:amd64. |
| 22-May-2019 15:13:33 | Preparing to unpack .../libpcre3-dev_2%3a8.38-3.1_amd64.deb ... |
| 22-May-2019 15:13:33 | Unpacking libpcre3-dev:amd64 (2:8.38-3.1) ... |
| 22-May-2019 15:13:33 | Selecting previously unselected package zlib1g-dev:amd64. |
| 22-May-2019 15:13:33 | Preparing to unpack .../zlib1g-dev_1%3a1.2.8.dfsg-2ubuntu4.1_amd64.deb ... |
| 22-May-2019 15:13:33 | Unpacking zlib1g-dev:amd64 (1:1.2.8.dfsg-2ubuntu4.1) ... |
| 22-May-2019 15:13:34 | Selecting previously unselected package libpng12-dev:amd64. |
| 22-May-2019 15:13:34 | Preparing to unpack .../libpng12-dev_1.2.54-1ubuntu1.1_amd64.deb ... |
| 22-May-2019 15:13:34 | Unpacking libpng12-dev:amd64 (1.2.54-1ubuntu1.1) ... |
| 22-May-2019 15:13:35 | Selecting previously unselected package libreadline6-dev:amd64. |
| 22-May-2019 15:13:35 | Preparing to unpack .../libreadline6-dev_6.3-8ubuntu2_amd64.deb ... |
| 22-May-2019 15:13:35 | Unpacking libreadline6-dev:amd64 (6.3-8ubuntu2) ... |
| 22-May-2019 15:13:35 | Selecting previously unselected package libreadline-dev:amd64. |
| 22-May-2019 15:13:35 | Preparing to unpack .../libreadline-dev_6.3-8ubuntu2_amd64.deb ... |
| 22-May-2019 15:13:35 | Unpacking libreadline-dev:amd64 (6.3-8ubuntu2) ... |
| 22-May-2019 15:13:35 | Selecting previously unselected package libtcl8.6:amd64. |
| 22-May-2019 15:13:35 | Preparing to unpack .../libtcl8.6_8.6.5+dfsg-2_amd64.deb ... |
| 22-May-2019 15:13:36 | Unpacking libtcl8.6:amd64 (8.6.5+dfsg-2) ... |
| 22-May-2019 15:13:37 | Selecting previously unselected package libtiff5:amd64. |
| 22-May-2019 15:13:37 | Preparing to unpack .../libtiff5_4.0.6-1ubuntu0.6_amd64.deb ... |
| 22-May-2019 15:13:37 | Unpacking libtiff5:amd64 (4.0.6-1ubuntu0.6) ... |
| 22-May-2019 15:13:38 | Selecting previously unselected package libtk8.6:amd64. |
| 22-May-2019 15:13:38 | Preparing to unpack .../libtk8.6_8.6.5-1_amd64.deb ... |
| 22-May-2019 15:13:38 | Unpacking libtk8.6:amd64 (8.6.5-1) ... |
| 22-May-2019 15:13:38 | Selecting previously unselected package libxt6:amd64. |
| 22-May-2019 15:13:38 | Preparing to unpack .../libxt6_1%3a1.1.5-0ubuntu1_amd64.deb ... |
| 22-May-2019 15:13:38 | Unpacking libxt6:amd64 (1:1.1.5-0ubuntu1) ... |
| 22-May-2019 15:13:39 | Selecting previously unselected package pkg-config. |
| 22-May-2019 15:13:39 | Preparing to unpack .../pkg-config_0.29.1-0ubuntu1_amd64.deb ... |
| 22-May-2019 15:13:39 | Unpacking pkg-config (0.29.1-0ubuntu1) ... |
| 22-May-2019 15:13:40 | Selecting previously unselected package zip. |
| 22-May-2019 15:13:40 | Preparing to unpack .../archives/zip_3.0-11_amd64.deb ... |
| 22-May-2019 15:13:40 | Unpacking zip (3.0-11) ... |
| 22-May-2019 15:13:41 | Selecting previously unselected package unzip. |
| 22-May-2019 15:13:41 | Preparing to unpack .../unzip_6.0-20ubuntu1_amd64.deb ... |
| 22-May-2019 15:13:41 | Unpacking unzip (6.0-20ubuntu1) ... |
| 22-May-2019 15:13:41 | Selecting previously unselected package xdg-utils. |
| 22-May-2019 15:13:41 | Preparing to unpack .../xdg-utils_1.1.1-1ubuntu1.16.04.3_all.deb ... |
| 22-May-2019 15:13:41 | Unpacking xdg-utils (1.1.1-1ubuntu1.16.04.3) ... |
| 22-May-2019 15:13:41 | Selecting previously unselected package r-base-core. |
| 22-May-2019 15:13:41 | Preparing to unpack .../r-base-core_3.4.4-1xenial0_amd64.deb ... |
| 22-May-2019 15:13:41 | Unpacking r-base-core (3.4.4-1xenial0) ... |
| 22-May-2019 15:13:45 | Selecting previously unselected package liblzma-dev:amd64. |
| 22-May-2019 15:13:45 | Preparing to unpack .../liblzma-dev_5.1.1alpha+20120614-2ubuntu2_amd64.deb ... |
| 22-May-2019 15:13:45 | Unpacking liblzma-dev:amd64 (5.1.1alpha+20120614-2ubuntu2) ... |
| 22-May-2019 15:13:45 | Selecting previously unselected package r-base-dev. |
| 22-May-2019 15:13:45 | Preparing to unpack .../r-base-dev_3.4.4-1xenial0_all.deb ... |
| 22-May-2019 15:13:45 | Unpacking r-base-dev (3.4.4-1xenial0) ... |
| 22-May-2019 15:13:46 | Processing triggers for libc-bin (2.23-0ubuntu11) ... |
| 22-May-2019 15:13:46 | Processing triggers for mime-support (3.59ubuntu1) ... |
| 22-May-2019 15:13:46 | Processing triggers for systemd (229-4ubuntu21.21) ... |
| 22-May-2019 15:13:46 | Setting up libgdbm3:amd64 (1.8.3-13.1) ... |
| 22-May-2019 15:13:46 | Setting up libglib2.0-0:amd64 (2.48.2-0ubuntu4.1) ... |
| 22-May-2019 15:13:46 | No schema files found: doing nothing. |
| 22-May-2019 15:13:47 | Setting up libxau6:amd64 (1:1.0.8-1) ... |
| 22-May-2019 15:13:47 | Setting up libxdmcp6:amd64 (1:1.1.2-1.1) ... |
| 22-May-2019 15:13:47 | Setting up libxcb1:amd64 (1.11.1-1ubuntu1) ... |
| 22-May-2019 15:13:47 | Setting up libx11-data (2:1.6.3-1ubuntu2.1) ... |
| 22-May-2019 15:13:47 | Setting up libx11-6:amd64 (2:1.6.3-1ubuntu2.1) ... |
| 22-May-2019 15:13:47 | Setting up libxext6:amd64 (2:1.3.3-1) ... |
| 22-May-2019 15:13:48 | Setting up groff-base (1.22.3-7) ... |
| 22-May-2019 15:13:48 | Setting up bsdmainutils (9.0.6ubuntu3) ... |
| 22-May-2019 15:13:48 | update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode |
| 22-May-2019 15:13:48 | update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode |
| 22-May-2019 15:13:48 | Setting up libpipeline1:amd64 (1.4.1-2) ... |
| 22-May-2019 15:13:49 | Setting up man-db (2.7.5-1) ... |
| 22-May-2019 15:13:49 | debconf: unable to initialize frontend: Dialog |
| 22-May-2019 15:13:49 | debconf: (TERM is not set, so the dialog frontend is not usable.) |
| 22-May-2019 15:13:49 | debconf: falling back to frontend: Readline |
| 22-May-2019 15:13:49 | Building database of manual pages ... |
| 22-May-2019 15:13:58 | Setting up fonts-dejavu-core (2.35-1) ... |
| 22-May-2019 15:13:59 | Setting up ucf (3.0036) ... |
| 22-May-2019 15:13:59 | debconf: unable to initialize frontend: Dialog |
| 22-May-2019 15:13:59 | debconf: (TERM is not set, so the dialog frontend is not usable.) |
| 22-May-2019 15:13:59 | debconf: falling back to frontend: Readline |
| 22-May-2019 15:14:00 | Setting up fontconfig-config (2.11.94-0ubuntu1.1) ... |
| 22-May-2019 15:14:02 | Setting up libpng12-0:amd64 (1.2.54-1ubuntu1.1) ... |
| 22-May-2019 15:14:03 | Setting up libfreetype6:amd64 (2.6.1-0.1ubuntu2.3) ... |
| 22-May-2019 15:14:03 | Setting up libfontconfig1:amd64 (2.11.94-0ubuntu1.1) ... |
| 22-May-2019 15:14:03 | Setting up fontconfig (2.11.94-0ubuntu1.1) ... |
| 22-May-2019 15:14:05 | Regenerating fonts cache... done. |
| 22-May-2019 15:14:05 | Setting up x11-common (1:7.7+13ubuntu3.1) ... |
| 22-May-2019 15:14:06 | debconf: unable to initialize frontend: Dialog |
| 22-May-2019 15:14:06 | debconf: (TERM is not set, so the dialog frontend is not usable.) |
| 22-May-2019 15:14:06 | debconf: falling back to frontend: Readline |
| 22-May-2019 15:14:06 | update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults |
| 22-May-2019 15:14:06 | invoke-rc.d: could not determine current runlevel |
| 22-May-2019 15:14:06 | invoke-rc.d: policy-rc.d denied execution of start. |
| 22-May-2019 15:14:07 | Setting up libice6:amd64 (2:1.0.9-1) ... |
| 22-May-2019 15:14:07 | Setting up libjpeg-turbo8:amd64 (1.4.2-0ubuntu3.1) ... |
| 22-May-2019 15:14:07 | Setting up libpcrecpp0v5:amd64 (2:8.38-3.1) ... |
| 22-May-2019 15:14:07 | Setting up libsigsegv2:amd64 (2.10-4) ... |
| 22-May-2019 15:14:07 | Setting up libsm6:amd64 (2:1.2.2-1) ... |
| 22-May-2019 15:14:08 | Setting up libunistring0:amd64 (0.9.3-5.2ubuntu1) ... |
| 22-May-2019 15:14:08 | Setting up libxrender1:amd64 (1:0.9.9-0ubuntu1) ... |
| 22-May-2019 15:14:09 | Setting up libxft2:amd64 (2.3.2-1) ... |
| 22-May-2019 15:14:09 | Setting up libxss1:amd64 (1:1.2.2-1) ... |
| 22-May-2019 15:14:09 | Setting up perl-modules-5.22 (5.22.1-9ubuntu0.6) ... |
| 22-May-2019 15:14:09 | Setting up libperl5.22:amd64 (5.22.1-9ubuntu0.6) ... |
| 22-May-2019 15:14:09 | Setting up perl (5.22.1-9ubuntu0.6) ... |
| 22-May-2019 15:14:10 | update-alternatives: using /usr/bin/prename to provide /usr/bin/rename (rename) in auto mode |
| 22-May-2019 15:14:10 | Setting up libjbig0:amd64 (2.1-3.1) ... |
| 22-May-2019 15:14:10 | Setting up libgmp10:amd64 (2:6.1.0+dfsg-2) ... |
| 22-May-2019 15:14:10 | Setting up libmpfr4:amd64 (3.1.4-1) ... |
| 22-May-2019 15:14:10 | Setting up libmpc3:amd64 (1.0.3-1) ... |
| 22-May-2019 15:14:10 | Setting up tzdata (2019a-0ubuntu0.16.04) ... |
| 22-May-2019 15:14:11 | debconf: unable to initialize frontend: Dialog |
| 22-May-2019 15:14:11 | debconf: (TERM is not set, so the dialog frontend is not usable.) |
| 22-May-2019 15:14:11 | debconf: falling back to frontend: Readline |
| 22-May-2019 15:14:11 | |
| 22-May-2019 15:14:11 | Current default time zone: 'Etc/UTC' |
| 22-May-2019 15:14:11 | Local time is now: Wed May 22 20:14:11 UTC 2019. |
| 22-May-2019 15:14:11 | Universal Time is now: Wed May 22 20:14:11 UTC 2019. |
| 22-May-2019 15:14:11 | Run 'dpkg-reconfigure tzdata' if you wish to change it. |
| 22-May-2019 15:14:11 | |
| 22-May-2019 15:14:11 | Setting up bzip2 (1.0.6-8) ... |
| 22-May-2019 15:14:11 | Setting up libmagic1:amd64 (1:5.25-2ubuntu1.2) ... |
| 22-May-2019 15:14:11 | Setting up file (1:5.25-2ubuntu1.2) ... |
| 22-May-2019 15:14:11 | Setting up libnettle6:amd64 (3.2-1ubuntu0.16.04.1) ... |
| 22-May-2019 15:14:12 | Setting up libhogweed4:amd64 (3.2-1ubuntu0.16.04.1) ... |
| 22-May-2019 15:14:12 | Setting up libidn11:amd64 (1.32-3ubuntu1.2) ... |
| 22-May-2019 15:14:12 | Setting up libp11-kit0:amd64 (0.23.2-5~ubuntu16.04.1) ... |
| 22-May-2019 15:14:12 | Setting up libtasn1-6:amd64 (4.7-3ubuntu0.16.04.3) ... |
| 22-May-2019 15:14:12 | Setting up libgnutls30:amd64 (3.4.10-4ubuntu1.4) ... |
| 22-May-2019 15:14:12 | Setting up netbase (5.3) ... |
| 22-May-2019 15:14:13 | Setting up libasprintf0v5:amd64 (0.19.7-2ubuntu3.1) ... |
| 22-May-2019 15:14:13 | Setting up gettext-base (0.19.7-2ubuntu3.1) ... |
| 22-May-2019 15:14:13 | Setting up libroken18-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... |
| 22-May-2019 15:14:13 | Setting up libasn1-8-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... |
| 22-May-2019 15:14:14 | Setting up libkrb5support0:amd64 (1.13.2+dfsg-5ubuntu2.1) ... |
| 22-May-2019 15:14:14 | Setting up libk5crypto3:amd64 (1.13.2+dfsg-5ubuntu2.1) ... |
| 22-May-2019 15:14:14 | Setting up libkeyutils1:amd64 (1.5.9-8ubuntu1) ... |
| 22-May-2019 15:14:15 | Setting up libkrb5-3:amd64 (1.13.2+dfsg-5ubuntu2.1) ... |
| 22-May-2019 15:14:15 | Setting up libgssapi-krb5-2:amd64 (1.13.2+dfsg-5ubuntu2.1) ... |
| 22-May-2019 15:14:15 | Setting up libhcrypto4-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... |
| 22-May-2019 15:14:16 | Setting up libheimbase1-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... |
| 22-May-2019 15:14:16 | Setting up libwind0-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... |
| 22-May-2019 15:14:17 | Setting up libhx509-5-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... |
| 22-May-2019 15:14:17 | Setting up libkrb5-26-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... |
| 22-May-2019 15:14:17 | Setting up libheimntlm0-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... |
| 22-May-2019 15:14:17 | Setting up libgssapi3-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... |
| 22-May-2019 15:14:17 | Setting up libicu55:amd64 (55.1-7ubuntu0.4) ... |
| 22-May-2019 15:14:17 | Setting up libsasl2-modules-db:amd64 (2.1.26.dfsg1-14ubuntu0.1) ... |
| 22-May-2019 15:14:18 | Setting up libsasl2-2:amd64 (2.1.26.dfsg1-14ubuntu0.1) ... |
| 22-May-2019 15:14:18 | Setting up libldap-2.4-2:amd64 (2.4.42+dfsg-2ubuntu3.5) ... |
| 22-May-2019 15:14:18 | Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d-1ubuntu0.1) ... |
| 22-May-2019 15:14:18 | Setting up libxml2:amd64 (2.9.3+dfsg1-1ubuntu0.6) ... |
| 22-May-2019 15:14:18 | Setting up libxmuu1:amd64 (2:1.1.2-2) ... |
| 22-May-2019 15:14:18 | Setting up xauth (1:1.0.9-1ubuntu2) ... |
| 22-May-2019 15:14:19 | Setting up m4 (1.4.17-5) ... |
| 22-May-2019 15:14:19 | Setting up autoconf (2.69-9) ... |
| 22-May-2019 15:14:19 | Setting up autotools-dev (20150820.1) ... |
| 22-May-2019 15:14:19 | Setting up automake (1:1.15-4ubuntu1) ... |
| 22-May-2019 15:14:19 | update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode |
| 22-May-2019 15:14:19 | Setting up binutils (2.26.1-1ubuntu1~16.04.8) ... |
| 22-May-2019 15:14:20 | Setting up libc-dev-bin (2.23-0ubuntu11) ... |
| 22-May-2019 15:14:20 | Setting up linux-libc-dev:amd64 (4.4.0-148.174) ... |
| 22-May-2019 15:14:20 | Setting up libc6-dev:amd64 (2.23-0ubuntu11) ... |
| 22-May-2019 15:14:21 | Setting up libisl15:amd64 (0.16.1-1) ... |
| 22-May-2019 15:14:21 | Setting up cpp-5 (5.4.0-6ubuntu1~16.04.11) ... |
| 22-May-2019 15:14:21 | Setting up cpp (4:5.3.1-1ubuntu1) ... |
| 22-May-2019 15:14:21 | Setting up libcc1-0:amd64 (5.4.0-6ubuntu1~16.04.11) ... |
| 22-May-2019 15:14:21 | Setting up libgomp1:amd64 (5.4.0-6ubuntu1~16.04.11) ... |
| 22-May-2019 15:14:22 | Setting up libitm1:amd64 (5.4.0-6ubuntu1~16.04.11) ... |
| 22-May-2019 15:14:22 | Setting up libatomic1:amd64 (5.4.0-6ubuntu1~16.04.11) ... |
| 22-May-2019 15:14:22 | Setting up libasan2:amd64 (5.4.0-6ubuntu1~16.04.11) ... |
| 22-May-2019 15:14:22 | Setting up liblsan0:amd64 (5.4.0-6ubuntu1~16.04.11) ... |
| 22-May-2019 15:14:22 | Setting up libtsan0:amd64 (5.4.0-6ubuntu1~16.04.11) ... |
| 22-May-2019 15:14:22 | Setting up libubsan0:amd64 (5.4.0-6ubuntu1~16.04.11) ... |
| 22-May-2019 15:14:22 | Setting up libcilkrts5:amd64 (5.4.0-6ubuntu1~16.04.11) ... |
| 22-May-2019 15:14:23 | Setting up libmpx0:amd64 (5.4.0-6ubuntu1~16.04.11) ... |
| 22-May-2019 15:14:23 | Setting up libquadmath0:amd64 (5.4.0-6ubuntu1~16.04.11) ... |
| 22-May-2019 15:14:23 | Setting up libgcc-5-dev:amd64 (5.4.0-6ubuntu1~16.04.11) ... |
| 22-May-2019 15:14:23 | Setting up gcc-5 (5.4.0-6ubuntu1~16.04.11) ... |
| 22-May-2019 15:14:24 | Setting up gcc (4:5.3.1-1ubuntu1) ... |
| 22-May-2019 15:14:24 | Setting up libstdc++-5-dev:amd64 (5.4.0-6ubuntu1~16.04.11) ... |
| 22-May-2019 15:14:24 | Setting up g++-5 (5.4.0-6ubuntu1~16.04.11) ... |
| 22-May-2019 15:14:25 | Setting up g++ (4:5.3.1-1ubuntu1) ... |
| 22-May-2019 15:14:25 | update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode |
| 22-May-2019 15:14:25 | Setting up make (4.1-6) ... |
| 22-May-2019 15:14:25 | Setting up libdpkg-perl (1.18.4ubuntu1.5) ... |
| 22-May-2019 15:14:25 | Setting up xz-utils (5.1.1alpha+20120614-2ubuntu2) ... |
| 22-May-2019 15:14:25 | update-alternatives: using /usr/bin/xz to provide /usr/bin/lzma (lzma) in auto mode |
| 22-May-2019 15:14:26 | Setting up patch (2.7.5-1ubuntu0.16.04.1) ... |
| 22-May-2019 15:14:26 | Setting up dpkg-dev (1.18.4ubuntu1.5) ... |
| 22-May-2019 15:14:26 | Setting up build-essential (12.1ubuntu2) ... |
| 22-May-2019 15:14:26 | Setting up libcroco3:amd64 (0.6.11-1) ... |
| 22-May-2019 15:14:26 | Setting up gettext (0.19.7-2ubuntu3.1) ... |
| 22-May-2019 15:14:26 | Setting up intltool-debian (0.35.0+20060710.4) ... |
| 22-May-2019 15:14:27 | Setting up po-debconf (1.0.19) ... |
| 22-May-2019 15:14:27 | Setting up libarchive-zip-perl (1.56-2ubuntu0.1) ... |
| 22-May-2019 15:14:27 | Setting up libfile-stripnondeterminism-perl (0.015-1) ... |
| 22-May-2019 15:14:27 | Setting up libtimedate-perl (2.3000-2) ... |
| 22-May-2019 15:14:27 | Setting up liburi-perl (1.71-1) ... |
| 22-May-2019 15:14:27 | Setting up libencode-locale-perl (1.05-1) ... |
| 22-May-2019 15:14:28 | Setting up libhttp-date-perl (6.02-1) ... |
| 22-May-2019 15:14:28 | Setting up libfile-listing-perl (6.04-1) ... |
| 22-May-2019 15:14:28 | Setting up libhtml-tagset-perl (3.20-2) ... |
| 22-May-2019 15:14:29 | Setting up libhtml-parser-perl (3.72-1) ... |
| 22-May-2019 15:14:29 | Setting up libhtml-tree-perl (5.03-2) ... |
| 22-May-2019 15:14:29 | Setting up libio-html-perl (1.001-1) ... |
| 22-May-2019 15:14:29 | Setting up liblwp-mediatypes-perl (6.02-1) ... |
| 22-May-2019 15:14:30 | Setting up libhttp-message-perl (6.11-1) ... |
| 22-May-2019 15:14:30 | Setting up libhttp-cookies-perl (6.01-1) ... |
| 22-May-2019 15:14:30 | Setting up libhttp-negotiate-perl (6.00-2) ... |
| 22-May-2019 15:14:30 | Setting up libnet-ssleay-perl (1.72-1build1) ... |
| 22-May-2019 15:14:30 | Setting up libio-socket-ssl-perl (2.024-1) ... |
| 22-May-2019 15:14:30 | Setting up libnet-http-perl (6.09-1) ... |
| 22-May-2019 15:14:31 | Setting up libwww-robotrules-perl (6.01-1) ... |
| 22-May-2019 15:14:31 | Setting up python-six (1.10.0-3) ... |
| 22-May-2019 15:14:32 | Setting up python-pkg-resources (20.7.0-1) ... |
| 22-May-2019 15:14:33 | Setting up python-scour (0.32-1) ... |
| 22-May-2019 15:14:34 | Setting up libgfortran3:amd64 (5.4.0-6ubuntu1~16.04.11) ... |
| 22-May-2019 15:14:34 | Setting up libgfortran-5-dev:amd64 (5.4.0-6ubuntu1~16.04.11) ... |
| 22-May-2019 15:14:34 | Setting up gfortran-5 (5.4.0-6ubuntu1~16.04.11) ... |
| 22-May-2019 15:14:35 | Setting up gfortran (4:5.3.1-1ubuntu1) ... |
| 22-May-2019 15:14:35 | update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode |
| 22-May-2019 15:14:35 | update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode |
| 22-May-2019 15:14:35 | Setting up icu-devtools (55.1-7ubuntu0.4) ... |
| 22-May-2019 15:14:35 | Setting up libblas-common (3.6.0-2ubuntu2) ... |
| 22-May-2019 15:14:35 | Setting up libblas3 (3.6.0-2ubuntu2) ... |
| 22-May-2019 15:14:35 | update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode |
| 22-May-2019 15:14:36 | Setting up libblas-dev (3.6.0-2ubuntu2) ... |
| 22-May-2019 15:14:36 | update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode |
| 22-May-2019 15:14:36 | Setting up libbz2-dev:amd64 (1.0.6-8) ... |
| 22-May-2019 15:14:36 | Setting up libpixman-1-0:amd64 (0.33.6-1) ... |
| 22-May-2019 15:14:37 | Setting up libxcb-render0:amd64 (1.11.1-1ubuntu1) ... |
| 22-May-2019 15:14:37 | Setting up libxcb-shm0:amd64 (1.11.1-1ubuntu1) ... |
| 22-May-2019 15:14:37 | Setting up libcairo2:amd64 (1.14.6-1) ... |
| 22-May-2019 15:14:37 | Setting up libcurl3:amd64 (7.47.0-1ubuntu2.13) ... |
| 22-May-2019 15:14:38 | Setting up libdatrie1:amd64 (0.2.10-2) ... |
| 22-May-2019 15:14:38 | Setting up libgraphite2-3:amd64 (1.3.10-0ubuntu0.16.04.1) ... |
| 22-May-2019 15:14:38 | Setting up libharfbuzz0b:amd64 (1.0.1-1ubuntu0.1) ... |
| 22-May-2019 15:14:38 | Setting up libicu-dev:amd64 (55.1-7ubuntu0.4) ... |
| 22-May-2019 15:14:38 | Setting up libjpeg-turbo8-dev:amd64 (1.4.2-0ubuntu3.1) ... |
| 22-May-2019 15:14:38 | Setting up libjpeg8:amd64 (8c-2ubuntu8) ... |
| 22-May-2019 15:14:38 | Setting up libjpeg8-dev:amd64 (8c-2ubuntu8) ... |
| 22-May-2019 15:14:38 | Setting up libjpeg-dev:amd64 (8c-2ubuntu8) ... |
| 22-May-2019 15:14:39 | Setting up liblapack3 (3.6.0-2ubuntu2) ... |
| 22-May-2019 15:14:39 | update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode |
| 22-May-2019 15:14:39 | Setting up liblapack-dev (3.6.0-2ubuntu2) ... |
| 22-May-2019 15:14:39 | update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode |
| 22-May-2019 15:14:40 | Setting up libtinfo-dev:amd64 (6.0+20160213-1ubuntu1) ... |
| 22-May-2019 15:14:40 | Setting up libncurses5-dev:amd64 (6.0+20160213-1ubuntu1) ... |
| 22-May-2019 15:14:40 | Setting up libthai-data (0.1.24-2) ... |
| 22-May-2019 15:14:40 | Setting up libthai0:amd64 (0.1.24-2) ... |
| 22-May-2019 15:14:41 | Setting up libpango-1.0-0:amd64 (1.38.1-1) ... |
| 22-May-2019 15:14:41 | Setting up libpangoft2-1.0-0:amd64 (1.38.1-1) ... |
| 22-May-2019 15:14:41 | Setting up libpangocairo-1.0-0:amd64 (1.38.1-1) ... |
| 22-May-2019 15:14:41 | Setting up libpaper1:amd64 (1.1.24+nmu4ubuntu1) ... |
| 22-May-2019 15:14:41 | debconf: unable to initialize frontend: Dialog |
| 22-May-2019 15:14:41 | debconf: (TERM is not set, so the dialog frontend is not usable.) |
| 22-May-2019 15:14:41 | debconf: falling back to frontend: Readline |
| 22-May-2019 15:14:41 | |
| 22-May-2019 15:14:41 | Creating config file /etc/papersize with new version |
| 22-May-2019 15:14:41 | Setting up libpaper-utils (1.1.24+nmu4ubuntu1) ... |
| 22-May-2019 15:14:42 | Setting up libpcre16-3:amd64 (2:8.38-3.1) ... |
| 22-May-2019 15:14:42 | Setting up libpcre32-3:amd64 (2:8.38-3.1) ... |
| 22-May-2019 15:14:42 | Setting up libpcre3-dev:amd64 (2:8.38-3.1) ... |
| 22-May-2019 15:14:42 | Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-2ubuntu4.1) ... |
| 22-May-2019 15:14:42 | Setting up libpng12-dev:amd64 (1.2.54-1ubuntu1.1) ... |
| 22-May-2019 15:14:42 | Setting up libreadline6-dev:amd64 (6.3-8ubuntu2) ... |
| 22-May-2019 15:14:42 | Setting up libreadline-dev:amd64 (6.3-8ubuntu2) ... |
| 22-May-2019 15:14:42 | Setting up libtcl8.6:amd64 (8.6.5+dfsg-2) ... |
| 22-May-2019 15:14:43 | Setting up libtiff5:amd64 (4.0.6-1ubuntu0.6) ... |
| 22-May-2019 15:14:43 | Setting up libtk8.6:amd64 (8.6.5-1) ... |
| 22-May-2019 15:14:43 | Setting up libxt6:amd64 (1:1.1.5-0ubuntu1) ... |
| 22-May-2019 15:14:43 | Setting up pkg-config (0.29.1-0ubuntu1) ... |
| 22-May-2019 15:14:44 | Setting up zip (3.0-11) ... |
| 22-May-2019 15:14:44 | Setting up unzip (6.0-20ubuntu1) ... |
| 22-May-2019 15:14:45 | Setting up xdg-utils (1.1.1-1ubuntu1.16.04.3) ... |
| 22-May-2019 15:14:45 | Setting up r-base-core (3.4.4-1xenial0) ... |
| 22-May-2019 15:14:45 | debconf: unable to initialize frontend: Dialog |
| 22-May-2019 15:14:45 | debconf: (TERM is not set, so the dialog frontend is not usable.) |
| 22-May-2019 15:14:45 | debconf: falling back to frontend: Readline |
| 22-May-2019 15:14:45 | |
| 22-May-2019 15:14:45 | Creating config file /etc/R/Renviron with new version |
| 22-May-2019 15:14:45 | Setting up liblzma-dev:amd64 (5.1.1alpha+20120614-2ubuntu2) ... |
| 22-May-2019 15:14:46 | Setting up debhelper (9.20160115ubuntu3) ... |
| 22-May-2019 15:14:46 | Setting up libwww-perl (6.15-1) ... |
| 22-May-2019 15:14:46 | Setting up libxml-parser-perl (2.44-1build1) ... |
| 22-May-2019 15:14:46 | Setting up intltool (0.51.0-2ubuntu1.16.04.1) ... |
| 22-May-2019 15:14:46 | Setting up dh-translations (129) ... |
| 22-May-2019 15:14:46 | Setting up cdbs (0.4.130ubuntu2) ... |
| 22-May-2019 15:14:46 | Setting up r-base-dev (3.4.4-1xenial0) ... |
| 22-May-2019 15:14:46 | Setting up dh-strip-nondeterminism (0.015-1) ... |
| 22-May-2019 15:14:47 | Setting up liblwp-protocol-https-perl (6.06-2) ... |
| 22-May-2019 15:14:47 | Processing triggers for libc-bin (2.23-0ubuntu11) ... |
| 22-May-2019 15:14:47 | Processing triggers for systemd (229-4ubuntu21.21) ... |
| 22-May-2019 15:14:47 | Installing package into '/usr/local/lib/R/site-library' |
| 22-May-2019 15:14:47 | (as 'lib' is unspecified) |
| 22-May-2019 15:14:48 | trying URL 'http://cran.rstudio.com/src/contrib/jsonlite_1.6.tar.gz' |
| 22-May-2019 15:14:48 | Content type 'application/x-gzip' length 1052728 bytes (1.0 MB) |
| 22-May-2019 15:14:48 | ================================================== |
| 22-May-2019 15:14:48 | downloaded 1.0 MB |
| 22-May-2019 15:14:48 | |
| 22-May-2019 15:14:48 | * installing *source* package 'jsonlite' ... |
| 22-May-2019 15:14:49 | ** package 'jsonlite' successfully unpacked and MD5 sums checked |
| 22-May-2019 15:14:49 | ** libs |
| 22-May-2019 15:14:49 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c base64.c -o base64.o |
| 22-May-2019 15:14:49 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c collapse_array.c -o collapse_array.o |
| 22-May-2019 15:14:49 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c collapse_object.c -o collapse_object.o |
| 22-May-2019 15:14:49 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c collapse_pretty.c -o collapse_pretty.o |
| 22-May-2019 15:14:49 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c escape_chars.c -o escape_chars.o |
| 22-May-2019 15:14:49 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c integer64_to_na.c -o integer64_to_na.o |
| 22-May-2019 15:14:49 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c is_datelist.c -o is_datelist.o |
| 22-May-2019 15:14:49 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c is_recordlist.c -o is_recordlist.o |
| 22-May-2019 15:14:49 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c is_scalarlist.c -o is_scalarlist.o |
| 22-May-2019 15:14:49 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c modp_numtoa.c -o modp_numtoa.o |
| 22-May-2019 15:14:49 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c null_to_na.c -o null_to_na.o |
| 22-May-2019 15:14:49 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c num_to_char.c -o num_to_char.o |
| 22-May-2019 15:14:49 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c parse.c -o parse.o |
| 22-May-2019 15:14:50 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c prettify.c -o prettify.o |
| 22-May-2019 15:14:50 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c push_parser.c -o push_parser.o |
| 22-May-2019 15:14:50 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c r-base64.c -o r-base64.o |
| 22-May-2019 15:14:50 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c register.c -o register.o |
| 22-May-2019 15:14:50 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c row_collapse.c -o row_collapse.o |
| 22-May-2019 15:14:50 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c transpose_list.c -o transpose_list.o |
| 22-May-2019 15:14:50 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c validate.c -o validate.o |
| 22-May-2019 15:14:50 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl.c -o yajl/yajl.o |
| 22-May-2019 15:14:50 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_alloc.c -o yajl/yajl_alloc.o |
| 22-May-2019 15:14:50 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_buf.c -o yajl/yajl_buf.o |
| 22-May-2019 15:14:50 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_encode.c -o yajl/yajl_encode.o |
| 22-May-2019 15:14:50 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_gen.c -o yajl/yajl_gen.o |
| 22-May-2019 15:14:50 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_lex.c -o yajl/yajl_lex.o |
| 22-May-2019 15:14:51 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_parser.c -o yajl/yajl_parser.o |
| 22-May-2019 15:14:51 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_tree.c -o yajl/yajl_tree.o |
| 22-May-2019 15:14:51 | ar rcs yajl/libstatyajl.a yajl/yajl.o yajl/yajl_alloc.o yajl/yajl_buf.o yajl/yajl_encode.o yajl/yajl_gen.o yajl/yajl_lex.o yajl/yajl_parser.o yajl/yajl_tree.o |
| 22-May-2019 15:14:51 | g++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o jsonlite.so base64.o collapse_array.o collapse_object.o collapse_pretty.o escape_chars.o integer64_to_na.o is_datelist.o is_recordlist.o is_scalarlist.o modp_numtoa.o null_to_na.o num_to_char.o parse.o prettify.o push_parser.o r-base64.o register.o row_collapse.o transpose_list.o validate.o -Lyajl -lstatyajl -L/usr/lib/R/lib -lR |
| 22-May-2019 15:14:51 | installing to /usr/local/lib/R/site-library/jsonlite/libs |
| 22-May-2019 15:14:51 | ** R |
| 22-May-2019 15:14:51 | ** inst |
| 22-May-2019 15:14:51 | ** preparing package for lazy loading |
| 22-May-2019 15:14:51 | ** help |
| 22-May-2019 15:14:51 | *** installing help indices |
| 22-May-2019 15:14:51 | ** building package indices |
| 22-May-2019 15:14:51 | ** installing vignettes |
| 22-May-2019 15:14:51 | ** testing if installed package can be loaded |
| 22-May-2019 15:14:51 | * DONE (jsonlite) |
| 22-May-2019 15:14:51 | |
| 22-May-2019 15:14:51 | The downloaded source packages are in |
| 22-May-2019 15:14:51 | '/tmp/RtmppLGFN2/downloaded_packages' |
| 22-May-2019 15:14:51 | [1] "/usr/local/lib/R/site-library/jsonlite" |
| 22-May-2019 15:14:58 | Removing intermediate container 4b8c87fbe7d5 |
| 22-May-2019 15:14:58 | ---> e5d358dd9f5a |
| 22-May-2019 15:14:58 | Step 4/10 : COPY r_extractor.py launcher.R /home/clowder/ |
| 22-May-2019 15:14:59 | ---> 7a7b1c164127 |
| 22-May-2019 15:14:59 | Step 5/10 : ONBUILD COPY packages.* Dockerfile /home/clowder/ |
| 22-May-2019 15:14:59 | ---> Running in 7bea5d50d350 |
| 22-May-2019 15:15:00 | Removing intermediate container 7bea5d50d350 |
| 22-May-2019 15:15:00 | ---> 80ff113b5588 |
| 22-May-2019 15:15:00 | Step 6/10 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi |
| 22-May-2019 15:15:00 | ---> Running in 2437f59def2b |
| 22-May-2019 15:15:00 | Removing intermediate container 2437f59def2b |
| 22-May-2019 15:15:00 | ---> 6946d1fa29d0 |
| 22-May-2019 15:15:00 | Step 7/10 : ONBUILD COPY docker.R* Dockerfile /home/clowder/ |
| 22-May-2019 15:15:00 | ---> Running in 5a9aedd27912 |
| 22-May-2019 15:15:01 | Removing intermediate container 5a9aedd27912 |
| 22-May-2019 15:15:01 | ---> 70c480b657d4 |
| 22-May-2019 15:15:01 | Step 8/10 : ONBUILD RUN if [ -e docker.R ]; then Rscript docker.R; fi |
| 22-May-2019 15:15:01 | ---> Running in 91e615d47445 |
| 22-May-2019 15:15:01 | Removing intermediate container 91e615d47445 |
| 22-May-2019 15:15:01 | ---> d23a3560f702 |
| 22-May-2019 15:15:01 | Step 9/10 : ONBUILD ADD . /home/clowder/ |
| 22-May-2019 15:15:02 | ---> Running in 89256dc3733c |
| 22-May-2019 15:15:02 | Removing intermediate container 89256dc3733c |
| 22-May-2019 15:15:02 | ---> 60fcfde2f909 |
| 22-May-2019 15:15:02 | Step 10/10 : CMD python r_extractor.py |
| 22-May-2019 15:15:03 | ---> Running in ab0bcad919a9 |
| 22-May-2019 15:15:03 | Removing intermediate container ab0bcad919a9 |
| 22-May-2019 15:15:03 | ---> 1b9d5a50fa2b |
| 22-May-2019 15:15:03 | Successfully built 1b9d5a50fa2b |
| 22-May-2019 15:15:03 | Successfully tagged clowder/extractors-simple-r-extractor:onbuild |
| 22-May-2019 15:15:03 | Sending build context to Docker daemon 256kB |
| 22-May-2019 15:15:03 | |
| 22-May-2019 15:15:03 | Step 1/9 : FROM ubuntu:16.04 |
| 22-May-2019 15:15:03 | ---> 2a697363a870 |
| 22-May-2019 15:15:03 | Step 2/9 : ENV RABBITMQ_URI="amqp://guest:guest@rabbitmq:5672/%2F" RABBITMQ_EXCHANGE="clowder" RABBITMQ_QUEUE="" REGISTRATION_ENDPOINTS="" EMAIL_SERVER="" EMAIL_SENDER="extractor" MAIN_SCRIPT="" |
| 22-May-2019 15:15:03 | ---> Using cache |
| 22-May-2019 15:15:03 | ---> 95bc65a51a8e |
| 22-May-2019 15:15:03 | Step 3/9 : RUN apt-get -q -q update && apt-get install -y --no-install-recommends python python-pip && pip install --upgrade setuptools && rm -rf /var/lib/apt/lists/* |
| 22-May-2019 15:15:03 | ---> Using cache |
| 22-May-2019 15:15:03 | ---> 787029ab4149 |
| 22-May-2019 15:15:03 | Step 4/9 : COPY pyclowder /tmp/pyclowder/pyclowder |
| 22-May-2019 15:15:03 | ---> Using cache |
| 22-May-2019 15:15:03 | ---> 56a6c0d95b9d |
| 22-May-2019 15:15:03 | Step 5/9 : COPY setup.py description.rst /tmp/pyclowder/ |
| 22-May-2019 15:15:03 | ---> Using cache |
| 22-May-2019 15:15:03 | ---> 1e767772215e |
| 22-May-2019 15:15:03 | Step 6/9 : RUN pip install --upgrade /tmp/pyclowder && rm -rf /tmp/pyclowder |
| 22-May-2019 15:15:03 | ---> Using cache |
| 22-May-2019 15:15:03 | ---> 7670435254d9 |
| 22-May-2019 15:15:03 | Step 7/9 : WORKDIR /home/clowder |
| 22-May-2019 15:15:03 | ---> Using cache |
| 22-May-2019 15:15:03 | ---> c8c33e184b7a |
| 22-May-2019 15:15:03 | Step 8/9 : COPY notifications.json /home/clowder |
| 22-May-2019 15:15:03 | ---> Using cache |
| 22-May-2019 15:15:03 | ---> 9464f55d28bd |
| 22-May-2019 15:15:03 | Step 9/9 : CMD python "./${MAIN_SCRIPT}" |
| 22-May-2019 15:15:03 | ---> Using cache |
| 22-May-2019 15:15:03 | ---> 2595c4a07dba |
| 22-May-2019 15:15:03 | [Warning] One or more build-args [PYTHON_VERSION] were not consumed |
| 22-May-2019 15:15:03 | Successfully built 2595c4a07dba |
| 22-May-2019 15:15:03 | Successfully tagged clowder/pyclowder-python3:latest |
| 22-May-2019 15:15:03 | Sending build context to Docker daemon 254.5kB |
| 22-May-2019 15:15:03 | |
| 22-May-2019 15:15:04 | Step 1/6 : FROM clowder/pyclowder |
| 22-May-2019 15:15:04 | ---> 2595c4a07dba |
| 22-May-2019 15:15:04 | Step 2/6 : ONBUILD COPY packages.* Dockerfile /home/clowder/ |
| 22-May-2019 15:15:04 | ---> Using cache |
| 22-May-2019 15:15:04 | ---> ec531484d138 |
| 22-May-2019 15:15:04 | Step 3/6 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi |
| 22-May-2019 15:15:04 | ---> Using cache |
| 22-May-2019 15:15:04 | ---> cdf434ea7a1e |
| 22-May-2019 15:15:04 | Step 4/6 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ |
| 22-May-2019 15:15:04 | ---> Using cache |
| 22-May-2019 15:15:04 | ---> e52496b3a7bb |
| 22-May-2019 15:15:04 | Step 5/6 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi |
| 22-May-2019 15:15:04 | ---> Using cache |
| 22-May-2019 15:15:04 | ---> ff1d6c53ee77 |
| 22-May-2019 15:15:04 | Step 6/6 : ONBUILD ADD . /home/clowder/ |
| 22-May-2019 15:15:04 | ---> Using cache |
| 22-May-2019 15:15:04 | ---> e51649d30458 |
| 22-May-2019 15:15:04 | [Warning] One or more build-args [PYTHON_VERSION] were not consumed |
| 22-May-2019 15:15:04 | Successfully built e51649d30458 |
| 22-May-2019 15:15:04 | Successfully tagged clowder/pyclowder-python3:onbuild |
| 22-May-2019 15:15:04 | Sending build context to Docker daemon 6.656kB |
| 22-May-2019 15:15:04 | |
| 22-May-2019 15:15:04 | Step 1/9 : FROM clowder/pyclowder:onbuild |
| 22-May-2019 15:15:04 | # Executing 5 build triggers |
| 22-May-2019 15:15:04 | ---> Using cache |
| 22-May-2019 15:15:04 | ---> Using cache |
| 22-May-2019 15:15:04 | ---> Using cache |
| 22-May-2019 15:15:04 | ---> Using cache |
| 22-May-2019 15:15:04 | ---> Using cache |
| 22-May-2019 15:15:04 | ---> 23937e000553 |
| 22-May-2019 15:15:04 | Step 2/9 : ENV EXTRACTION_FUNC="" |
| 22-May-2019 15:15:04 | ---> Using cache |
| 22-May-2019 15:15:04 | ---> b623e6289c01 |
| 22-May-2019 15:15:04 | Step 3/9 : ENV EXTRACTION_MODULE="" |
| 22-May-2019 15:15:04 | ---> Using cache |
| 22-May-2019 15:15:04 | ---> aeb1347dd007 |
| 22-May-2019 15:15:04 | Step 4/9 : ONBUILD COPY packages.* Dockerfile /home/clowder/ |
| 22-May-2019 15:15:04 | ---> Using cache |
| 22-May-2019 15:15:04 | ---> 766515be00ec |
| 22-May-2019 15:15:04 | Step 5/9 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi |
| 22-May-2019 15:15:04 | ---> Using cache |
| 22-May-2019 15:15:04 | ---> 52d8342478fd |
| 22-May-2019 15:15:04 | Step 6/9 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ |
| 22-May-2019 15:15:04 | ---> Using cache |
| 22-May-2019 15:15:04 | ---> 1a7363716ccb |
| 22-May-2019 15:15:04 | Step 7/9 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi |
| 22-May-2019 15:15:04 | ---> Using cache |
| 22-May-2019 15:15:04 | ---> 9102cafac4fe |
| 22-May-2019 15:15:04 | Step 8/9 : ONBUILD ADD . /home/clowder/ |
| 22-May-2019 15:15:04 | ---> Using cache |
| 22-May-2019 15:15:04 | ---> 6d4375274c24 |
| 22-May-2019 15:15:04 | Step 9/9 : CMD python -c "from simple_extractor import SimplePythonExtractor; from ${EXTRACTION_MODULE} import *; SimplePythonExtractor(${EXTRACTION_FUNC}).start()" |
| 22-May-2019 15:15:04 | ---> Using cache |
| 22-May-2019 15:15:04 | ---> 0efbc860cdf8 |
| 22-May-2019 15:15:04 | [Warning] One or more build-args [PYTHON_VERSION] were not consumed |
| 22-May-2019 15:15:04 | Successfully built 0efbc860cdf8 |
| 22-May-2019 15:15:04 | Successfully tagged clowder/extractors-simple-extractor-python3:onbuild |
| 22-May-2019 15:15:04 | Sending build context to Docker daemon 13.31kB |
| 22-May-2019 15:15:04 | |
| 22-May-2019 15:15:04 | Step 1/10 : FROM clowder/pyclowder:latest |
| 22-May-2019 15:15:04 | ---> 2595c4a07dba |
| 22-May-2019 15:15:04 | Step 2/10 : ENV R_SCRIPT="" R_FUNCTION="" |
| 22-May-2019 15:15:04 | ---> Using cache |
| 22-May-2019 15:15:04 | ---> 50a6265f91c4 |
| 22-May-2019 15:15:04 | Step 3/10 : RUN echo "deb http://cran.rstudio.com/bin/linux/ubuntu xenial/" > /etc/apt/sources.list.d/R.list && apt-key adv --keyserver keyserver.ubuntu.com --recv E084DAB9 && apt-get -q -q update && apt-get -y install --no-install-recommends r-base-core r-base-dev && rm -rf /var/lib/apt/lists/* && Rscript --vanilla -e "install.packages('jsonlite', repos='http://cran.rstudio.com/'); print(system.file(package = 'jsonlite')); q(status=as.integer(system.file(package = 'jsonlite') == ''))" |
| 22-May-2019 15:15:04 | ---> Using cache |
| 22-May-2019 15:15:04 | ---> e5d358dd9f5a |
| 22-May-2019 15:15:04 | Step 4/10 : COPY r_extractor.py launcher.R /home/clowder/ |
| 22-May-2019 15:15:04 | ---> Using cache |
| 22-May-2019 15:15:04 | ---> 7a7b1c164127 |
| 22-May-2019 15:15:04 | Step 5/10 : ONBUILD COPY packages.* Dockerfile /home/clowder/ |
| 22-May-2019 15:15:04 | ---> Using cache |
| 22-May-2019 15:15:04 | ---> 80ff113b5588 |
| 22-May-2019 15:15:04 | Step 6/10 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi |
| 22-May-2019 15:15:04 | ---> Using cache |
| 22-May-2019 15:15:04 | ---> 6946d1fa29d0 |
| 22-May-2019 15:15:04 | Step 7/10 : ONBUILD COPY docker.R* Dockerfile /home/clowder/ |
| 22-May-2019 15:15:04 | ---> Using cache |
| 22-May-2019 15:15:04 | ---> 70c480b657d4 |
| 22-May-2019 15:15:04 | Step 8/10 : ONBUILD RUN if [ -e docker.R ]; then Rscript docker.R; fi |
| 22-May-2019 15:15:04 | ---> Using cache |
| 22-May-2019 15:15:04 | ---> d23a3560f702 |
| 22-May-2019 15:15:04 | Step 9/10 : ONBUILD ADD . /home/clowder/ |
| 22-May-2019 15:15:04 | ---> Using cache |
| 22-May-2019 15:15:04 | ---> 60fcfde2f909 |
| 22-May-2019 15:15:04 | Step 10/10 : CMD python r_extractor.py |
| 22-May-2019 15:15:04 | ---> Using cache |
| 22-May-2019 15:15:04 | ---> 1b9d5a50fa2b |
| 22-May-2019 15:15:04 | [Warning] One or more build-args [PYTHON_VERSION] were not consumed |
| 22-May-2019 15:15:04 | Successfully built 1b9d5a50fa2b |
| 22-May-2019 15:15:04 | Successfully tagged clowder/extractors-simple-r-extractor-python3:onbuild |
| 22-May-2019 15:15:04 | Sending build context to Docker daemon 9.216kB |
| 22-May-2019 15:15:04 | |
| 22-May-2019 15:15:04 | Step 1/2 : FROM clowder/pyclowder:onbuild |
| 22-May-2019 15:15:04 | # Executing 5 build triggers |
| 22-May-2019 15:15:05 | ---> Running in 5b4d06ce034e |
| 22-May-2019 15:15:06 | Removing intermediate container 5b4d06ce034e |
| 22-May-2019 15:15:06 | ---> Running in fd1ca09d0fa9 |
| 22-May-2019 15:15:09 | Removing intermediate container fd1ca09d0fa9 |
| 22-May-2019 15:15:09 | ---> 9e1093744d7e |
| 22-May-2019 15:15:09 | Step 2/2 : ENV MAIN_SCRIPT="wordcount.py" |
| 22-May-2019 15:15:10 | ---> Running in 9029547b2994 |
| 22-May-2019 15:15:10 | Removing intermediate container 9029547b2994 |
| 22-May-2019 15:15:10 | ---> bcb4a07d0a91 |
| 22-May-2019 15:15:10 | Successfully built bcb4a07d0a91 |
| 22-May-2019 15:15:10 | Successfully tagged clowder/extractors-wordcount:latest |
| 22-May-2019 15:15:10 | Sending build context to Docker daemon 5.12kB |
| 22-May-2019 15:15:10 | |
| 22-May-2019 15:15:10 | Step 1/3 : FROM clowder/extractors-simple-extractor:onbuild |
| 22-May-2019 15:15:10 | # Executing 5 build triggers |
| 22-May-2019 15:15:11 | ---> Running in 6fb792b830e6 |
| 22-May-2019 15:15:13 | Removing intermediate container 6fb792b830e6 |
| 22-May-2019 15:15:14 | ---> Running in de2c51083774 |
| 22-May-2019 15:15:16 | Removing intermediate container de2c51083774 |
| 22-May-2019 15:15:16 | ---> 2013239f1329 |
| 22-May-2019 15:15:16 | Step 2/3 : ENV EXTRACTION_FUNC="wordcount" |
| 22-May-2019 15:15:17 | ---> Running in 461b9b8dbe51 |
| 22-May-2019 15:15:17 | Removing intermediate container 461b9b8dbe51 |
| 22-May-2019 15:15:17 | ---> 9169affd003a |
| 22-May-2019 15:15:17 | Step 3/3 : ENV EXTRACTION_MODULE="wordcount" |
| 22-May-2019 15:15:17 | ---> Running in 60fc3ab839d8 |
| 22-May-2019 15:15:17 | Removing intermediate container 60fc3ab839d8 |
| 22-May-2019 15:15:17 | ---> 1a0f0424b74b |
| 22-May-2019 15:15:17 | Successfully built 1a0f0424b74b |
| 22-May-2019 15:15:18 | Successfully tagged clowder/extractors-wordcount-simple-extractor:latest |
| 22-May-2019 15:15:18 | Sending build context to Docker daemon 5.12kB |
| 22-May-2019 15:15:18 | |
| 22-May-2019 15:15:18 | Step 1/2 : FROM clowder/extractors-simple-r-extractor:onbuild |
| 22-May-2019 15:15:18 | # Executing 5 build triggers |
| 22-May-2019 15:15:18 | ---> Running in d646cff1dc2e |
| 22-May-2019 15:15:20 | Removing intermediate container d646cff1dc2e |
| 22-May-2019 15:15:21 | ---> Running in be72f5d0e5e7 |
| 22-May-2019 15:15:22 | Removing intermediate container be72f5d0e5e7 |
| 22-May-2019 15:15:23 | ---> d0e1af931fb4 |
| 22-May-2019 15:15:23 | Step 2/2 : ENV R_SCRIPT="wordcount.R" R_FUNCTION="process_file" |
| 22-May-2019 15:15:23 | ---> Running in 0d80684eb78b |
| 22-May-2019 15:15:24 | Removing intermediate container 0d80684eb78b |
| 22-May-2019 15:15:24 | ---> ba6f9eddd9f1 |
| 22-May-2019 15:15:24 | Successfully built ba6f9eddd9f1 |
| 22-May-2019 15:15:24 | Successfully tagged clowder/extractors-wordcount-simple-r-extractor:latest |
| 22-May-2019 15:15:24 | Sending build context to Docker daemon 8.192kB |
| 22-May-2019 15:15:24 | |
| 22-May-2019 15:15:24 | Step 1/7 : FROM python:3.5 |
| 22-May-2019 15:15:25 | 3.5: Pulling from library/python |
| 22-May-2019 15:15:25 | c5e155d5a1d1: Pulling fs layer |
| 22-May-2019 15:15:25 | 221d80d00ae9: Pulling fs layer |
| 22-May-2019 15:15:25 | 4250b3117dca: Pulling fs layer |
| 22-May-2019 15:15:25 | 3b7ca19181b2: Pulling fs layer |
| 22-May-2019 15:15:25 | 425d7b2a5bcc: Pulling fs layer |
| 22-May-2019 15:15:25 | d7a526a3eca5: Pulling fs layer |
| 22-May-2019 15:15:25 | 03339fb09dd6: Pulling fs layer |
| 22-May-2019 15:15:25 | 594669b0b000: Pulling fs layer |
| 22-May-2019 15:15:25 | 7a79e4a07ea7: Pulling fs layer |
| 22-May-2019 15:15:25 | 3b7ca19181b2: Waiting |
| 22-May-2019 15:15:25 | 425d7b2a5bcc: Waiting |
| 22-May-2019 15:15:25 | d7a526a3eca5: Waiting |
| 22-May-2019 15:15:25 | 03339fb09dd6: Waiting |
| 22-May-2019 15:15:25 | 594669b0b000: Waiting |
| 22-May-2019 15:15:25 | 7a79e4a07ea7: Waiting |
| 22-May-2019 15:15:25 | 221d80d00ae9: Verifying Checksum |
| 22-May-2019 15:15:25 | 221d80d00ae9: Download complete |
| 22-May-2019 15:15:26 | 4250b3117dca: Verifying Checksum |
| 22-May-2019 15:15:26 | 4250b3117dca: Download complete |
| 22-May-2019 15:15:26 | c5e155d5a1d1: Verifying Checksum |
| 22-May-2019 15:15:26 | c5e155d5a1d1: Download complete |
| 22-May-2019 15:15:27 | d7a526a3eca5: Verifying Checksum |
| 22-May-2019 15:15:27 | d7a526a3eca5: Download complete |
| 22-May-2019 15:15:27 | 3b7ca19181b2: Verifying Checksum |
| 22-May-2019 15:15:27 | 3b7ca19181b2: Download complete |
| 22-May-2019 15:15:27 | 594669b0b000: Verifying Checksum |
| 22-May-2019 15:15:27 | 594669b0b000: Download complete |
| 22-May-2019 15:15:28 | 7a79e4a07ea7: Verifying Checksum |
| 22-May-2019 15:15:28 | 7a79e4a07ea7: Download complete |
| 22-May-2019 15:15:28 | 03339fb09dd6: Verifying Checksum |
| 22-May-2019 15:15:28 | 03339fb09dd6: Download complete |
| 22-May-2019 15:15:31 | c5e155d5a1d1: Pull complete |
| 22-May-2019 15:15:32 | 221d80d00ae9: Pull complete |
| 22-May-2019 15:15:33 | 425d7b2a5bcc: Verifying Checksum |
| 22-May-2019 15:15:33 | 425d7b2a5bcc: Download complete |
| 22-May-2019 15:15:33 | 4250b3117dca: Pull complete |
| 22-May-2019 15:15:36 | 3b7ca19181b2: Pull complete |
| 22-May-2019 15:15:45 | 425d7b2a5bcc: Pull complete |
| 22-May-2019 15:15:46 | d7a526a3eca5: Pull complete |
| 22-May-2019 15:15:47 | 03339fb09dd6: Pull complete |
| 22-May-2019 15:15:48 | 594669b0b000: Pull complete |
| 22-May-2019 15:15:48 | 7a79e4a07ea7: Pull complete |
| 22-May-2019 15:15:48 | Digest: sha256:7f890da10a88c961de1355f82eaf70e1730c1bfa5c06aefcbf58323ea319fcad |
| 22-May-2019 15:15:48 | Status: Downloaded newer image for python:3.5 |
| 22-May-2019 15:15:48 | ---> 74a0040526f9 |
| 22-May-2019 15:15:48 | Step 2/7 : ENV RABBITMQ_URI="amqp://guest:guest@rabbitmq/%2F" |
| 22-May-2019 15:15:48 | ---> Running in 674dcf674243 |
| 22-May-2019 15:15:49 | Removing intermediate container 674dcf674243 |
| 22-May-2019 15:15:49 | ---> 6d2337cfa677 |
| 22-May-2019 15:15:49 | Step 3/7 : EXPOSE 9999 |
| 22-May-2019 15:15:49 | ---> Running in 27491817ed14 |
| 22-May-2019 15:15:49 | Removing intermediate container 27491817ed14 |
| 22-May-2019 15:15:49 | ---> e6f417bc88bd |
| 22-May-2019 15:15:49 | Step 4/7 : RUN pip install pika==0.11.2 requests==2.18.4 |
| 22-May-2019 15:15:49 | ---> Running in dab16d1c1119 |
| 22-May-2019 15:15:51 | Collecting pika==0.11.2 |
| 22-May-2019 15:15:51 | Downloading https://files.pythonhosted.org/packages/76/b4/0ada6918ac79ce4d8d45d0ba436ee21a1ef685047fb1dde4d2de0178b327/pika-0.11.2-py2.py3-none-any.whl (107kB) |
| 22-May-2019 15:15:51 | Collecting requests==2.18.4 |
| 22-May-2019 15:15:51 | Downloading https://files.pythonhosted.org/packages/49/df/50aa1999ab9bde74656c2919d9c0c085fd2b3775fd3eca826012bef76d8c/requests-2.18.4-py2.py3-none-any.whl (88kB) |
| 22-May-2019 15:15:51 | Collecting urllib3<1.23,>=1.21.1 (from requests==2.18.4) |
| 22-May-2019 15:15:51 | Downloading https://files.pythonhosted.org/packages/63/cb/6965947c13a94236f6d4b8223e21beb4d576dc72e8130bd7880f600839b8/urllib3-1.22-py2.py3-none-any.whl (132kB) |
| 22-May-2019 15:15:51 | Collecting idna<2.7,>=2.5 (from requests==2.18.4) |
| 22-May-2019 15:15:52 | Downloading https://files.pythonhosted.org/packages/27/cc/6dd9a3869f15c2edfab863b992838277279ce92663d334df9ecf5106f5c6/idna-2.6-py2.py3-none-any.whl (56kB) |
| 22-May-2019 15:15:52 | Collecting chardet<3.1.0,>=3.0.2 (from requests==2.18.4) |
| 22-May-2019 15:15:52 | Downloading https://files.pythonhosted.org/packages/bc/a9/01ffebfb562e4274b6487b4bb1ddec7ca55ec7510b22e4c51f14098443b8/chardet-3.0.4-py2.py3-none-any.whl (133kB) |
| 22-May-2019 15:15:52 | Collecting certifi>=2017.4.17 (from requests==2.18.4) |
| 22-May-2019 15:15:52 | Downloading https://files.pythonhosted.org/packages/60/75/f692a584e85b7eaba0e03827b3d51f45f571c2e793dd731e598828d380aa/certifi-2019.3.9-py2.py3-none-any.whl (158kB) |
| 22-May-2019 15:15:52 | Installing collected packages: pika, urllib3, idna, chardet, certifi, requests |
| 22-May-2019 15:15:52 | Successfully installed certifi-2019.3.9 chardet-3.0.4 idna-2.6 pika-0.11.2 requests-2.18.4 urllib3-1.22 |
| 22-May-2019 15:15:53 | Removing intermediate container dab16d1c1119 |
| 22-May-2019 15:15:53 | ---> 7d30fb9a493e |
| 22-May-2019 15:15:53 | Step 5/7 : WORKDIR /src |
| 22-May-2019 15:15:53 | ---> Running in 8b0c9d61d0ca |
| 22-May-2019 15:15:54 | Removing intermediate container 8b0c9d61d0ca |
| 22-May-2019 15:15:54 | ---> 4794c4f5a8e9 |
| 22-May-2019 15:15:54 | Step 6/7 : COPY monitor.py /src/ |
| 22-May-2019 15:15:54 | ---> 27a11a99784e |
| 22-May-2019 15:15:54 | Step 7/7 : CMD python monitor.py |
| 22-May-2019 15:15:54 | ---> Running in 8643d080ad44 |
| 22-May-2019 15:15:55 | Removing intermediate container 8643d080ad44 |
| 22-May-2019 15:15:55 | ---> 528604b5b193 |
| 22-May-2019 15:15:55 | Successfully built 528604b5b193 |
| 22-May-2019 15:15:55 | Successfully tagged clowder/extractors-monitor:latest |
| 22-May-2019 15:15:55 | Finished task 'docker build' with result: Success |
| 22-May-2019 15:15:55 | Starting task 'docker push' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script' |
| 22-May-2019 15:15:55 | Beginning to execute external process for build 'Clowder - pyclowder2 - clowder-clients-clean - Default Job #20 (CATS-PYC267-JOB1-20)' ... running command line: /bin/sh release.sh ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC267-JOB1 ... using extra environment variables: bamboo_planRepository_1_branch=clowder-clients-clean bamboo_capability_system_builder_command_npm_6=/home/bamboo/node-v6.9.1/bin/npm bamboo_capability_system_builder_command_buckminster_4_3=/home/bamboo/buckminster-4.3/buckminster bamboo_capability_system_builder_node_Node_js_v6_9_1=/home/bamboo/node-v6.9.1/bin/node bamboo_capability_system_builder_command_buckminster_4_4=/home/bamboo/buckminster-4.4/buckminster bamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster bamboo_repository_157745170_git_branch=clowder-clients-clean bamboo_planRepository_1_branchDisplayName=clowder-clients-clean bamboo_repository_revision_number=8613f687206139c3760f91dacb3b39f19ae7cc8a bamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-PYC267-JOB1-20 bamboo_repository_157745170_revision_number=8613f687206139c3760f91dacb3b39f19ae7cc8a bamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build bamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC267-JOB1 bamboo_planRepository_1_name=pyclowder2 bamboo_buildKey=CATS-PYC267-JOB1 bamboo_capability_system_os=linux bamboo_shortPlanName=clowder-clients-clean bamboo_planRepository_name=pyclowder2 bamboo_buildNumber=20 bamboo_capability_system_builder_node_grunt_6=/home/bamboo/node-v6.9.1/bin/grunt bamboo_repository_157745170_name=pyclowder2 bamboo_shortJobName=Default Job bamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-PYC267-JOB1-20 bamboo_repository_157745170_previous_revision_number=44a25ac14e21f81c56eea5a8eaff43dbba852ab8 bamboo_planRepository_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git bamboo_agentId=140673027 bamboo_planName=Clowder - pyclowder2 - clowder-clients-clean bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_script_6=/home/bamboo/bamboo-agent-home/temp/CATS-PYC267-JOB1-20-ScriptBuildTask-293446221152069716.sh bamboo_shortPlanKey=PYC267 bamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt bamboo_capability_system_builder_node_Node_js_v0_10_28=/home/bamboo/node-v0.10.28/bin/node bamboo_shortJobKey=JOB1 bamboo_repository_157745170_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git bamboo_planRepository_revision=8613f687206139c3760f91dacb3b39f19ae7cc8a bamboo_buildTimeStamp=2019-05-22T15:09:11.172-05:00 bamboo_repository_previous_revision_number=44a25ac14e21f81c56eea5a8eaff43dbba852ab8 bamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm bamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1 bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_script_3=/home/bamboo/bamboo-agent-home/temp/CATS-PYC267-JOB1-20-ScriptBuildTask-7513751674880114658.sh bamboo_planRepository_previousRevision=44a25ac14e21f81c56eea5a8eaff43dbba852ab8 bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_script_2=/bin/sh docker.sh bamboo_repository_git_branch=clowder-clients-clean bamboo_buildResultKey=CATS-PYC267-JOB1-20 bamboo_repository_branch_name=clowder-clients-clean bamboo_buildPlanName=Clowder - pyclowder2 - clowder-clients-clean - Default Job bamboo_planRepository_1_revision=8613f687206139c3760f91dacb3b39f19ae7cc8a bamboo_capability_system_builder_command_python3=/usr/bin/python3 bamboo_repository_name=pyclowder2 bamboo_repository_157745170_branch_name=clowder-clients-clean bamboo_repository_157745170_git_username= bamboo_buildFailed=false bamboo_capability_system_docker_executable=/usr/bin/docker bamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt bamboo_planRepository_branch=clowder-clients-clean bamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir bamboo_capability_system_git_executable=/usr/bin/git bamboo_repository_git_username= bamboo_planRepository_1_previousRevision=44a25ac14e21f81c56eea5a8eaff43dbba852ab8 bamboo_capability_system_builder_sbt_SBT_0_13_13=/home/bamboo/sbt-0.13.13 bamboo_planRepository_branchDisplayName=clowder-clients-clean bamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs bamboo_planRepository_1_type=bbserver bamboo_planRepository_branchName=clowder-clients-clean bamboo_capability_system_builder_command_python2_7=/usr/bin/python2.7 bamboo_capability_system_hostname=buildserver-1 bamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.8.0_66 bamboo_capability_system_software_mongo=/usr/bin/mongo bamboo_plan_storageTag=plan-157548579 bamboo_hg_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_hg-repositories-cache bamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs bamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl bamboo_capability_system_jdk_JDK_1_8_0_66=/home/bamboo/jdk1.8.0_66 bamboo_planRepository_1_username= bamboo_planRepository_type=bbserver bamboo_git_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_git-repositories-cache bamboo_repository_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git bamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node bamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4 bamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.3.9 bamboo_tmp_directory=/home/bamboo/bamboo-agent-home/temp bamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC267-JOB1 bamboo_planKey=CATS-PYC267 bamboo_planRepository_1_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git bamboo_planRepository_username= bamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_66 bamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41 bamboo_capability_system_builder_command_mkcrx=/home/bamboo/mkcrx/mkcrx.sh bamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60 bamboo_planRepository_1_branchName=clowder-clients-clean |
| 22-May-2019 15:15:55 | Sending build context to Docker daemon 256kB |
| 22-May-2019 15:15:55 | |
| 22-May-2019 15:15:55 | Step 1/9 : FROM ubuntu:16.04 |
| 22-May-2019 15:15:55 | ---> 2a697363a870 |
| 22-May-2019 15:15:55 | Step 2/9 : ENV RABBITMQ_URI="amqp://guest:guest@rabbitmq:5672/%2F" RABBITMQ_EXCHANGE="clowder" RABBITMQ_QUEUE="" REGISTRATION_ENDPOINTS="" EMAIL_SERVER="" EMAIL_SENDER="extractor" MAIN_SCRIPT="" |
| 22-May-2019 15:15:55 | ---> Using cache |
| 22-May-2019 15:15:55 | ---> 95bc65a51a8e |
| 22-May-2019 15:15:55 | Step 3/9 : RUN apt-get -q -q update && apt-get install -y --no-install-recommends python python-pip && pip install --upgrade setuptools && rm -rf /var/lib/apt/lists/* |
| 22-May-2019 15:15:55 | ---> Using cache |
| 22-May-2019 15:15:55 | ---> 787029ab4149 |
| 22-May-2019 15:15:55 | Step 4/9 : COPY pyclowder /tmp/pyclowder/pyclowder |
| 22-May-2019 15:15:55 | ---> Using cache |
| 22-May-2019 15:15:55 | ---> 56a6c0d95b9d |
| 22-May-2019 15:15:55 | Step 5/9 : COPY setup.py description.rst /tmp/pyclowder/ |
| 22-May-2019 15:15:55 | ---> Using cache |
| 22-May-2019 15:15:55 | ---> 1e767772215e |
| 22-May-2019 15:15:55 | Step 6/9 : RUN pip install --upgrade /tmp/pyclowder && rm -rf /tmp/pyclowder |
| 22-May-2019 15:15:55 | ---> Using cache |
| 22-May-2019 15:15:55 | ---> 7670435254d9 |
| 22-May-2019 15:15:55 | Step 7/9 : WORKDIR /home/clowder |
| 22-May-2019 15:15:55 | ---> Using cache |
| 22-May-2019 15:15:55 | ---> c8c33e184b7a |
| 22-May-2019 15:15:55 | Step 8/9 : COPY notifications.json /home/clowder |
| 22-May-2019 15:15:55 | ---> Using cache |
| 22-May-2019 15:15:55 | ---> 9464f55d28bd |
| 22-May-2019 15:15:55 | Step 9/9 : CMD python "./${MAIN_SCRIPT}" |
| 22-May-2019 15:15:55 | ---> Using cache |
| 22-May-2019 15:15:55 | ---> 2595c4a07dba |
| 22-May-2019 15:15:55 | Successfully built 2595c4a07dba |
| 22-May-2019 15:15:55 | Successfully tagged clowder/pyclowder:latest |
| 22-May-2019 15:15:55 | Sending build context to Docker daemon 254.5kB |
| 22-May-2019 15:15:55 | |
| 22-May-2019 15:15:55 | Step 1/6 : FROM clowder/pyclowder |
| 22-May-2019 15:15:55 | ---> 2595c4a07dba |
| 22-May-2019 15:15:55 | Step 2/6 : ONBUILD COPY packages.* Dockerfile /home/clowder/ |
| 22-May-2019 15:15:55 | ---> Using cache |
| 22-May-2019 15:15:55 | ---> ec531484d138 |
| 22-May-2019 15:15:55 | Step 3/6 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi |
| 22-May-2019 15:15:55 | ---> Using cache |
| 22-May-2019 15:15:55 | ---> cdf434ea7a1e |
| 22-May-2019 15:15:55 | Step 4/6 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ |
| 22-May-2019 15:15:55 | ---> Using cache |
| 22-May-2019 15:15:55 | ---> e52496b3a7bb |
| 22-May-2019 15:15:55 | Step 5/6 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi |
| 22-May-2019 15:15:55 | ---> Using cache |
| 22-May-2019 15:15:55 | ---> ff1d6c53ee77 |
| 22-May-2019 15:15:55 | Step 6/6 : ONBUILD ADD . /home/clowder/ |
| 22-May-2019 15:15:55 | ---> Using cache |
| 22-May-2019 15:15:55 | ---> e51649d30458 |
| 22-May-2019 15:15:55 | Successfully built e51649d30458 |
| 22-May-2019 15:15:55 | Successfully tagged clowder/pyclowder:onbuild |
| 22-May-2019 15:15:55 | Sending build context to Docker daemon 12.8kB |
| 22-May-2019 15:15:55 | |
| 22-May-2019 15:15:55 | Step 1/5 : FROM clowder/pyclowder:onbuild |
| 22-May-2019 15:15:55 | # Executing 5 build triggers |
| 22-May-2019 15:15:55 | ---> Using cache |
| 22-May-2019 15:15:55 | ---> Using cache |
| 22-May-2019 15:15:55 | ---> Using cache |
| 22-May-2019 15:15:55 | ---> Using cache |
| 22-May-2019 15:15:55 | ---> Using cache |
| 22-May-2019 15:15:55 | ---> 6de7e87955dc |
| 22-May-2019 15:15:55 | Step 2/5 : ENV MAIN_SCRIPT="binary_extractor.py" RABBITMQ_QUEUE="" IMAGE_BINARY="" IMAGE_TYPE="" IMAGE_THUMBNAIL_COMMAND="" IMAGE_PREVIEW_COMMAND="" PREVIEW_BINARY="" PREVIEW_TYPE="" PREVIEW_COMMAND="" |
| 22-May-2019 15:15:55 | ---> Using cache |
| 22-May-2019 15:15:55 | ---> 9df07b88f9a1 |
| 22-May-2019 15:15:55 | Step 3/5 : ONBUILD COPY packages.* Dockerfile /home/clowder/ |
| 22-May-2019 15:15:55 | ---> Using cache |
| 22-May-2019 15:15:55 | ---> f0ec0fffb21c |
| 22-May-2019 15:15:55 | Step 4/5 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi |
| 22-May-2019 15:15:55 | ---> Using cache |
| 22-May-2019 15:15:55 | ---> 8336eeed57be |
| 22-May-2019 15:15:55 | Step 5/5 : ONBUILD COPY extractor_info.json /home/clowder/ |
| 22-May-2019 15:15:55 | ---> Using cache |
| 22-May-2019 15:15:55 | ---> 4006bfdb172b |
| 22-May-2019 15:15:55 | Successfully built 4006bfdb172b |
| 22-May-2019 15:15:55 | Successfully tagged clowder/extractors-binary-preview:onbuild |
| 22-May-2019 15:15:55 | Sending build context to Docker daemon 6.656kB |
| 22-May-2019 15:15:55 | |
| 22-May-2019 15:15:55 | Step 1/9 : FROM clowder/pyclowder:onbuild |
| 22-May-2019 15:15:55 | # Executing 5 build triggers |
| 22-May-2019 15:15:55 | ---> Using cache |
| 22-May-2019 15:15:55 | ---> Using cache |
| 22-May-2019 15:15:55 | ---> Using cache |
| 22-May-2019 15:15:55 | ---> Using cache |
| 22-May-2019 15:15:55 | ---> Using cache |
| 22-May-2019 15:15:55 | ---> 23937e000553 |
| 22-May-2019 15:15:55 | Step 2/9 : ENV EXTRACTION_FUNC="" |
| 22-May-2019 15:15:55 | ---> Using cache |
| 22-May-2019 15:15:55 | ---> b623e6289c01 |
| 22-May-2019 15:15:55 | Step 3/9 : ENV EXTRACTION_MODULE="" |
| 22-May-2019 15:15:55 | ---> Using cache |
| 22-May-2019 15:15:55 | ---> aeb1347dd007 |
| 22-May-2019 15:15:55 | Step 4/9 : ONBUILD COPY packages.* Dockerfile /home/clowder/ |
| 22-May-2019 15:15:55 | ---> Using cache |
| 22-May-2019 15:15:55 | ---> 766515be00ec |
| 22-May-2019 15:15:55 | Step 5/9 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi |
| 22-May-2019 15:15:55 | ---> Using cache |
| 22-May-2019 15:15:55 | ---> 52d8342478fd |
| 22-May-2019 15:15:55 | Step 6/9 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ |
| 22-May-2019 15:15:55 | ---> Using cache |
| 22-May-2019 15:15:55 | ---> 1a7363716ccb |
| 22-May-2019 15:15:55 | Step 7/9 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi |
| 22-May-2019 15:15:55 | ---> Using cache |
| 22-May-2019 15:15:55 | ---> 9102cafac4fe |
| 22-May-2019 15:15:55 | Step 8/9 : ONBUILD ADD . /home/clowder/ |
| 22-May-2019 15:15:55 | ---> Using cache |
| 22-May-2019 15:15:55 | ---> 6d4375274c24 |
| 22-May-2019 15:15:55 | Step 9/9 : CMD python -c "from simple_extractor import SimplePythonExtractor; from ${EXTRACTION_MODULE} import *; SimplePythonExtractor(${EXTRACTION_FUNC}).start()" |
| 22-May-2019 15:15:55 | ---> Using cache |
| 22-May-2019 15:15:55 | ---> 0efbc860cdf8 |
| 22-May-2019 15:15:55 | Successfully built 0efbc860cdf8 |
| 22-May-2019 15:15:56 | Successfully tagged clowder/extractors-simple-extractor:onbuild |
| 22-May-2019 15:15:56 | Sending build context to Docker daemon 13.31kB |
| 22-May-2019 15:15:56 | |
| 22-May-2019 15:15:56 | Step 1/10 : FROM clowder/pyclowder:latest |
| 22-May-2019 15:15:56 | ---> 2595c4a07dba |
| 22-May-2019 15:15:56 | Step 2/10 : ENV R_SCRIPT="" R_FUNCTION="" |
| 22-May-2019 15:15:56 | ---> Using cache |
| 22-May-2019 15:15:56 | ---> 50a6265f91c4 |
| 22-May-2019 15:15:56 | Step 3/10 : RUN echo "deb http://cran.rstudio.com/bin/linux/ubuntu xenial/" > /etc/apt/sources.list.d/R.list && apt-key adv --keyserver keyserver.ubuntu.com --recv E084DAB9 && apt-get -q -q update && apt-get -y install --no-install-recommends r-base-core r-base-dev && rm -rf /var/lib/apt/lists/* && Rscript --vanilla -e "install.packages('jsonlite', repos='http://cran.rstudio.com/'); print(system.file(package = 'jsonlite')); q(status=as.integer(system.file(package = 'jsonlite') == ''))" |
| 22-May-2019 15:15:56 | ---> Using cache |
| 22-May-2019 15:15:56 | ---> e5d358dd9f5a |
| 22-May-2019 15:15:56 | Step 4/10 : COPY r_extractor.py launcher.R /home/clowder/ |
| 22-May-2019 15:15:56 | ---> Using cache |
| 22-May-2019 15:15:56 | ---> 7a7b1c164127 |
| 22-May-2019 15:15:56 | Step 5/10 : ONBUILD COPY packages.* Dockerfile /home/clowder/ |
| 22-May-2019 15:15:56 | ---> Using cache |
| 22-May-2019 15:15:56 | ---> 80ff113b5588 |
| 22-May-2019 15:15:56 | Step 6/10 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi |
| 22-May-2019 15:15:56 | ---> Using cache |
| 22-May-2019 15:15:56 | ---> 6946d1fa29d0 |
| 22-May-2019 15:15:56 | Step 7/10 : ONBUILD COPY docker.R* Dockerfile /home/clowder/ |
| 22-May-2019 15:15:56 | ---> Using cache |
| 22-May-2019 15:15:56 | ---> 70c480b657d4 |
| 22-May-2019 15:15:56 | Step 8/10 : ONBUILD RUN if [ -e docker.R ]; then Rscript docker.R; fi |
| 22-May-2019 15:15:56 | ---> Using cache |
| 22-May-2019 15:15:56 | ---> d23a3560f702 |
| 22-May-2019 15:15:56 | Step 9/10 : ONBUILD ADD . /home/clowder/ |
| 22-May-2019 15:15:56 | ---> Using cache |
| 22-May-2019 15:15:56 | ---> 60fcfde2f909 |
| 22-May-2019 15:15:56 | Step 10/10 : CMD python r_extractor.py |
| 22-May-2019 15:15:56 | ---> Using cache |
| 22-May-2019 15:15:56 | ---> 1b9d5a50fa2b |
| 22-May-2019 15:15:56 | Successfully built 1b9d5a50fa2b |
| 22-May-2019 15:15:56 | Successfully tagged clowder/extractors-simple-r-extractor:onbuild |
| 22-May-2019 15:15:56 | Sending build context to Docker daemon 256kB |
| 22-May-2019 15:15:56 | |
| 22-May-2019 15:15:56 | Step 1/9 : FROM ubuntu:16.04 |
| 22-May-2019 15:15:56 | ---> 2a697363a870 |
| 22-May-2019 15:15:56 | Step 2/9 : ENV RABBITMQ_URI="amqp://guest:guest@rabbitmq:5672/%2F" RABBITMQ_EXCHANGE="clowder" RABBITMQ_QUEUE="" REGISTRATION_ENDPOINTS="" EMAIL_SERVER="" EMAIL_SENDER="extractor" MAIN_SCRIPT="" |
| 22-May-2019 15:15:56 | ---> Using cache |
| 22-May-2019 15:15:56 | ---> 95bc65a51a8e |
| 22-May-2019 15:15:56 | Step 3/9 : RUN apt-get -q -q update && apt-get install -y --no-install-recommends python python-pip && pip install --upgrade setuptools && rm -rf /var/lib/apt/lists/* |
| 22-May-2019 15:15:56 | ---> Using cache |
| 22-May-2019 15:15:56 | ---> 787029ab4149 |
| 22-May-2019 15:15:56 | Step 4/9 : COPY pyclowder /tmp/pyclowder/pyclowder |
| 22-May-2019 15:15:56 | ---> Using cache |
| 22-May-2019 15:15:56 | ---> 56a6c0d95b9d |
| 22-May-2019 15:15:56 | Step 5/9 : COPY setup.py description.rst /tmp/pyclowder/ |
| 22-May-2019 15:15:56 | ---> Using cache |
| 22-May-2019 15:15:56 | ---> 1e767772215e |
| 22-May-2019 15:15:56 | Step 6/9 : RUN pip install --upgrade /tmp/pyclowder && rm -rf /tmp/pyclowder |
| 22-May-2019 15:15:56 | ---> Using cache |
| 22-May-2019 15:15:56 | ---> 7670435254d9 |
| 22-May-2019 15:15:56 | Step 7/9 : WORKDIR /home/clowder |
| 22-May-2019 15:15:56 | ---> Using cache |
| 22-May-2019 15:15:56 | ---> c8c33e184b7a |
| 22-May-2019 15:15:56 | Step 8/9 : COPY notifications.json /home/clowder |
| 22-May-2019 15:15:56 | ---> Using cache |
| 22-May-2019 15:15:56 | ---> 9464f55d28bd |
| 22-May-2019 15:15:56 | Step 9/9 : CMD python "./${MAIN_SCRIPT}" |
| 22-May-2019 15:15:56 | ---> Using cache |
| 22-May-2019 15:15:56 | ---> 2595c4a07dba |
| 22-May-2019 15:15:56 | [Warning] One or more build-args [PYTHON_VERSION] were not consumed |
| 22-May-2019 15:15:56 | Successfully built 2595c4a07dba |
| 22-May-2019 15:15:56 | Successfully tagged clowder/pyclowder-python3:latest |
| 22-May-2019 15:15:56 | Sending build context to Docker daemon 254.5kB |
| 22-May-2019 15:15:56 | |
| 22-May-2019 15:15:56 | Step 1/6 : FROM clowder/pyclowder |
| 22-May-2019 15:15:56 | ---> 2595c4a07dba |
| 22-May-2019 15:15:56 | Step 2/6 : ONBUILD COPY packages.* Dockerfile /home/clowder/ |
| 22-May-2019 15:15:56 | ---> Using cache |
| 22-May-2019 15:15:56 | ---> ec531484d138 |
| 22-May-2019 15:15:56 | Step 3/6 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi |
| 22-May-2019 15:15:56 | ---> Using cache |
| 22-May-2019 15:15:56 | ---> cdf434ea7a1e |
| 22-May-2019 15:15:56 | Step 4/6 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ |
| 22-May-2019 15:15:56 | ---> Using cache |
| 22-May-2019 15:15:56 | ---> e52496b3a7bb |
| 22-May-2019 15:15:56 | Step 5/6 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi |
| 22-May-2019 15:15:56 | ---> Using cache |
| 22-May-2019 15:15:56 | ---> ff1d6c53ee77 |
| 22-May-2019 15:15:56 | Step 6/6 : ONBUILD ADD . /home/clowder/ |
| 22-May-2019 15:15:56 | ---> Using cache |
| 22-May-2019 15:15:56 | ---> e51649d30458 |
| 22-May-2019 15:15:56 | [Warning] One or more build-args [PYTHON_VERSION] were not consumed |
| 22-May-2019 15:15:56 | Successfully built e51649d30458 |
| 22-May-2019 15:15:56 | Successfully tagged clowder/pyclowder-python3:onbuild |
| 22-May-2019 15:15:56 | Sending build context to Docker daemon 6.656kB |
| 22-May-2019 15:15:56 | |
| 22-May-2019 15:15:56 | Step 1/9 : FROM clowder/pyclowder:onbuild |
| 22-May-2019 15:15:56 | # Executing 5 build triggers |
| 22-May-2019 15:15:56 | ---> Using cache |
| 22-May-2019 15:15:56 | ---> Using cache |
| 22-May-2019 15:15:56 | ---> Using cache |
| 22-May-2019 15:15:56 | ---> Using cache |
| 22-May-2019 15:15:56 | ---> Using cache |
| 22-May-2019 15:15:56 | ---> 23937e000553 |
| 22-May-2019 15:15:56 | Step 2/9 : ENV EXTRACTION_FUNC="" |
| 22-May-2019 15:15:56 | ---> Using cache |
| 22-May-2019 15:15:56 | ---> b623e6289c01 |
| 22-May-2019 15:15:56 | Step 3/9 : ENV EXTRACTION_MODULE="" |
| 22-May-2019 15:15:56 | ---> Using cache |
| 22-May-2019 15:15:56 | ---> aeb1347dd007 |
| 22-May-2019 15:15:56 | Step 4/9 : ONBUILD COPY packages.* Dockerfile /home/clowder/ |
| 22-May-2019 15:15:56 | ---> Using cache |
| 22-May-2019 15:15:56 | ---> 766515be00ec |
| 22-May-2019 15:15:56 | Step 5/9 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi |
| 22-May-2019 15:15:56 | ---> Using cache |
| 22-May-2019 15:15:56 | ---> 52d8342478fd |
| 22-May-2019 15:15:56 | Step 6/9 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ |
| 22-May-2019 15:15:56 | ---> Using cache |
| 22-May-2019 15:15:56 | ---> 1a7363716ccb |
| 22-May-2019 15:15:56 | Step 7/9 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi |
| 22-May-2019 15:15:56 | ---> Using cache |
| 22-May-2019 15:15:56 | ---> 9102cafac4fe |
| 22-May-2019 15:15:56 | Step 8/9 : ONBUILD ADD . /home/clowder/ |
| 22-May-2019 15:15:56 | ---> Using cache |
| 22-May-2019 15:15:56 | ---> 6d4375274c24 |
| 22-May-2019 15:15:56 | Step 9/9 : CMD python -c "from simple_extractor import SimplePythonExtractor; from ${EXTRACTION_MODULE} import *; SimplePythonExtractor(${EXTRACTION_FUNC}).start()" |
| 22-May-2019 15:15:56 | ---> Using cache |
| 22-May-2019 15:15:56 | ---> 0efbc860cdf8 |
| 22-May-2019 15:15:56 | [Warning] One or more build-args [PYTHON_VERSION] were not consumed |
| 22-May-2019 15:15:56 | Successfully built 0efbc860cdf8 |
| 22-May-2019 15:15:56 | Successfully tagged clowder/extractors-simple-extractor-python3:onbuild |
| 22-May-2019 15:15:57 | Sending build context to Docker daemon 13.31kB |
| 22-May-2019 15:15:57 | |
| 22-May-2019 15:15:57 | Step 1/10 : FROM clowder/pyclowder:latest |
| 22-May-2019 15:15:57 | ---> 2595c4a07dba |
| 22-May-2019 15:15:57 | Step 2/10 : ENV R_SCRIPT="" R_FUNCTION="" |
| 22-May-2019 15:15:57 | ---> Using cache |
| 22-May-2019 15:15:57 | ---> 50a6265f91c4 |
| 22-May-2019 15:15:57 | Step 3/10 : RUN echo "deb http://cran.rstudio.com/bin/linux/ubuntu xenial/" > /etc/apt/sources.list.d/R.list && apt-key adv --keyserver keyserver.ubuntu.com --recv E084DAB9 && apt-get -q -q update && apt-get -y install --no-install-recommends r-base-core r-base-dev && rm -rf /var/lib/apt/lists/* && Rscript --vanilla -e "install.packages('jsonlite', repos='http://cran.rstudio.com/'); print(system.file(package = 'jsonlite')); q(status=as.integer(system.file(package = 'jsonlite') == ''))" |
| 22-May-2019 15:15:57 | ---> Using cache |
| 22-May-2019 15:15:57 | ---> e5d358dd9f5a |
| 22-May-2019 15:15:57 | Step 4/10 : COPY r_extractor.py launcher.R /home/clowder/ |
| 22-May-2019 15:15:57 | ---> Using cache |
| 22-May-2019 15:15:57 | ---> 7a7b1c164127 |
| 22-May-2019 15:15:57 | Step 5/10 : ONBUILD COPY packages.* Dockerfile /home/clowder/ |
| 22-May-2019 15:15:57 | ---> Using cache |
| 22-May-2019 15:15:57 | ---> 80ff113b5588 |
| 22-May-2019 15:15:57 | Step 6/10 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi |
| 22-May-2019 15:15:57 | ---> Using cache |
| 22-May-2019 15:15:57 | ---> 6946d1fa29d0 |
| 22-May-2019 15:15:57 | Step 7/10 : ONBUILD COPY docker.R* Dockerfile /home/clowder/ |
| 22-May-2019 15:15:57 | ---> Using cache |
| 22-May-2019 15:15:57 | ---> 70c480b657d4 |
| 22-May-2019 15:15:57 | Step 8/10 : ONBUILD RUN if [ -e docker.R ]; then Rscript docker.R; fi |
| 22-May-2019 15:15:57 | ---> Using cache |
| 22-May-2019 15:15:57 | ---> d23a3560f702 |
| 22-May-2019 15:15:57 | Step 9/10 : ONBUILD ADD . /home/clowder/ |
| 22-May-2019 15:15:57 | ---> Using cache |
| 22-May-2019 15:15:57 | ---> 60fcfde2f909 |
| 22-May-2019 15:15:57 | Step 10/10 : CMD python r_extractor.py |
| 22-May-2019 15:15:57 | ---> Using cache |
| 22-May-2019 15:15:57 | ---> 1b9d5a50fa2b |
| 22-May-2019 15:15:57 | [Warning] One or more build-args [PYTHON_VERSION] were not consumed |
| 22-May-2019 15:15:57 | Successfully built 1b9d5a50fa2b |
| 22-May-2019 15:15:57 | Successfully tagged clowder/extractors-simple-r-extractor-python3:onbuild |
| 22-May-2019 15:15:57 | Sending build context to Docker daemon 9.216kB |
| 22-May-2019 15:15:57 | |
| 22-May-2019 15:15:57 | Step 1/2 : FROM clowder/pyclowder:onbuild |
| 22-May-2019 15:15:57 | # Executing 5 build triggers |
| 22-May-2019 15:15:57 | ---> Using cache |
| 22-May-2019 15:15:57 | ---> Using cache |
| 22-May-2019 15:15:57 | ---> Using cache |
| 22-May-2019 15:15:57 | ---> Using cache |
| 22-May-2019 15:15:57 | ---> Using cache |
| 22-May-2019 15:15:57 | ---> 9e1093744d7e |
| 22-May-2019 15:15:57 | Step 2/2 : ENV MAIN_SCRIPT="wordcount.py" |
| 22-May-2019 15:15:57 | ---> Using cache |
| 22-May-2019 15:15:57 | ---> bcb4a07d0a91 |
| 22-May-2019 15:15:57 | Successfully built bcb4a07d0a91 |
| 22-May-2019 15:15:57 | Successfully tagged clowder/extractors-wordcount:latest |
| 22-May-2019 15:15:57 | Sending build context to Docker daemon 5.12kB |
| 22-May-2019 15:15:57 | |
| 22-May-2019 15:15:57 | Step 1/3 : FROM clowder/extractors-simple-extractor:onbuild |
| 22-May-2019 15:15:57 | # Executing 5 build triggers |
| 22-May-2019 15:15:57 | ---> Using cache |
| 22-May-2019 15:15:57 | ---> Using cache |
| 22-May-2019 15:15:57 | ---> Using cache |
| 22-May-2019 15:15:57 | ---> Using cache |
| 22-May-2019 15:15:57 | ---> Using cache |
| 22-May-2019 15:15:57 | ---> 2013239f1329 |
| 22-May-2019 15:15:57 | Step 2/3 : ENV EXTRACTION_FUNC="wordcount" |
| 22-May-2019 15:15:57 | ---> Using cache |
| 22-May-2019 15:15:57 | ---> 9169affd003a |
| 22-May-2019 15:15:57 | Step 3/3 : ENV EXTRACTION_MODULE="wordcount" |
| 22-May-2019 15:15:57 | ---> Using cache |
| 22-May-2019 15:15:57 | ---> 1a0f0424b74b |
| 22-May-2019 15:15:57 | Successfully built 1a0f0424b74b |
| 22-May-2019 15:15:57 | Successfully tagged clowder/extractors-wordcount-simple-extractor:latest |
| 22-May-2019 15:15:57 | Sending build context to Docker daemon 5.12kB |
| 22-May-2019 15:15:57 | |
| 22-May-2019 15:15:57 | Step 1/2 : FROM clowder/extractors-simple-r-extractor:onbuild |
| 22-May-2019 15:15:57 | # Executing 5 build triggers |
| 22-May-2019 15:15:57 | ---> Using cache |
| 22-May-2019 15:15:57 | ---> Using cache |
| 22-May-2019 15:15:57 | ---> Using cache |
| 22-May-2019 15:15:57 | ---> Using cache |
| 22-May-2019 15:15:57 | ---> Using cache |
| 22-May-2019 15:15:57 | ---> d0e1af931fb4 |
| 22-May-2019 15:15:57 | Step 2/2 : ENV R_SCRIPT="wordcount.R" R_FUNCTION="process_file" |
| 22-May-2019 15:15:57 | ---> Using cache |
| 22-May-2019 15:15:57 | ---> ba6f9eddd9f1 |
| 22-May-2019 15:15:57 | Successfully built ba6f9eddd9f1 |
| 22-May-2019 15:15:57 | Successfully tagged clowder/extractors-wordcount-simple-r-extractor:latest |
| 22-May-2019 15:15:57 | Sending build context to Docker daemon 8.192kB |
| 22-May-2019 15:15:57 | |
| 22-May-2019 15:15:57 | Step 1/7 : FROM python:3.5 |
| 22-May-2019 15:15:57 | ---> 74a0040526f9 |
| 22-May-2019 15:15:57 | Step 2/7 : ENV RABBITMQ_URI="amqp://guest:guest@rabbitmq/%2F" |
| 22-May-2019 15:15:57 | ---> Using cache |
| 22-May-2019 15:15:57 | ---> 6d2337cfa677 |
| 22-May-2019 15:15:57 | Step 3/7 : EXPOSE 9999 |
| 22-May-2019 15:15:57 | ---> Using cache |
| 22-May-2019 15:15:57 | ---> e6f417bc88bd |
| 22-May-2019 15:15:57 | Step 4/7 : RUN pip install pika==0.11.2 requests==2.18.4 |
| 22-May-2019 15:15:57 | ---> Using cache |
| 22-May-2019 15:15:57 | ---> 7d30fb9a493e |
| 22-May-2019 15:15:57 | Step 5/7 : WORKDIR /src |
| 22-May-2019 15:15:57 | ---> Using cache |
| 22-May-2019 15:15:57 | ---> 4794c4f5a8e9 |
| 22-May-2019 15:15:57 | Step 6/7 : COPY monitor.py /src/ |
| 22-May-2019 15:15:57 | ---> Using cache |
| 22-May-2019 15:15:57 | ---> 27a11a99784e |
| 22-May-2019 15:15:57 | Step 7/7 : CMD python monitor.py |
| 22-May-2019 15:15:57 | ---> Using cache |
| 22-May-2019 15:15:57 | ---> 528604b5b193 |
| 22-May-2019 15:15:57 | Successfully built 528604b5b193 |
| 22-May-2019 15:15:57 | Successfully tagged clowder/extractors-monitor:latest |
| 22-May-2019 15:15:57 | Finished task 'docker push' with result: Success |
| 22-May-2019 15:15:57 | Starting task 'test results' of type 'com.atlassian.bamboo.plugins.testresultparser:task.testresultparser.junit' |
| 22-May-2019 15:15:57 | Parsing test results under /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC267-JOB1... |
| 22-May-2019 15:15:57 | Finished task 'test results' with result: Success |
| 22-May-2019 15:15:57 | Running post build plugin 'Docker Container Cleanup' |
| 22-May-2019 15:15:57 | Running post build plugin 'NCover Results Collector' |
| 22-May-2019 15:15:57 | Running post build plugin 'Clover Results Collector' |
| 22-May-2019 15:15:57 | Running post build plugin 'npm Cache Cleanup' |
| 22-May-2019 15:15:57 | Running post build plugin 'Artifact Copier' |
| 22-May-2019 15:15:57 | Finalising the build... |
| 22-May-2019 15:15:57 | Stopping timer. |
| 22-May-2019 15:15:57 | Build CATS-PYC267-JOB1-20 completed. |
| 22-May-2019 15:15:58 | Running on server: post build plugin 'NCover Results Collector' |
| 22-May-2019 15:15:58 | Running on server: post build plugin 'Build Hanging Detection Configuration' |
| 22-May-2019 15:15:58 | Running on server: post build plugin 'Clover Delta Calculator' |
| 22-May-2019 15:15:58 | Running on server: post build plugin 'Maven Dependencies Postprocessor' |
| 22-May-2019 15:15:58 | All post build plugins have finished |
| 22-May-2019 15:15:58 | Generating build results summary... |
| 22-May-2019 15:15:58 | Saving build results to disk... |
| 22-May-2019 15:15:58 | Logging substituted variables... |
| 22-May-2019 15:15:58 | Indexing build results... |
| 22-May-2019 15:15:58 | Finished building CATS-PYC267-JOB1-20. |