Build: #94 was successful

Job: default was successful

Stages & jobs

  1. Default Stage

Build log

The build generated 573 lines of output. Download or view full build log.

19-Dec-2014 19:42:22 Build MMDB - Medici 1 GWT - default #94 (MMDB-MEDICI-JOB1-94) started building on agent buildserver-2.ncsa.illinois.edu
19-Dec-2014 19:42:22 Build working directory is /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1
19-Dec-2014 19:42:22 Executing build MMDB - Medici 1 GWT - default #94 (MMDB-MEDICI-JOB1-94)
19-Dec-2014 19:42:22 Starting task 'Source Code Checkout' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout'
19-Dec-2014 19:42:22 Build always requires a clean checkout
19-Dec-2014 19:42:22 Cleaning build directory '/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt'
19-Dec-2014 19:42:22 Build always requires a clean checkout
19-Dec-2014 19:42:22 Cleaning build directory '/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet'
19-Dec-2014 19:42:22 Updating source code to revision: be4a91e17aec92deb8437557b40e29ab99a26c72
19-Dec-2014 19:42:22 Creating local git repository in '/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/.git'.
19-Dec-2014 19:42:22 Initialized empty Git repository in /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/.git/
19-Dec-2014 19:42:22 Fetching 'refs/heads/master' from 'https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git'. Will try to do a shallow fetch.
19-Dec-2014 19:42:39 From https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web
19-Dec-2014 19:42:39 * [new branch]      master     -> master
19-Dec-2014 19:42:39 Checking out revision be4a91e17aec92deb8437557b40e29ab99a26c72.
19-Dec-2014 19:42:43 Already on 'master'
19-Dec-2014 19:42:43 Updated source code to revision: be4a91e17aec92deb8437557b40e29ab99a26c72
19-Dec-2014 19:42:43 Updating source code to revision: 0b0c4e05e8f4518f20b5ff7ffd272304deeab48e
19-Dec-2014 19:42:43 Creating local git repository in '/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/.git'.
19-Dec-2014 19:42:43 Initialized empty Git repository in /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/.git/
19-Dec-2014 19:42:44 Fetching 'refs/heads/master' from 'https://opensource.ncsa.illinois.edu/stash/scm/cbi/cet.git'. Will try to do a shallow fetch.
19-Dec-2014 19:42:56 From https://opensource.ncsa.illinois.edu/stash/scm/cbi/cet
19-Dec-2014 19:42:56 * [new branch]      master     -> master
19-Dec-2014 19:42:56 Checking out revision 0b0c4e05e8f4518f20b5ff7ffd272304deeab48e.
19-Dec-2014 19:42:57 Checking out files:  31% (925/2937)   
19-Dec-2014 19:42:57 Checking out files:  32% (940/2937)   
19-Dec-2014 19:42:57 Checking out files:  33% (970/2937)   
19-Dec-2014 19:42:57 Checking out files:  34% (999/2937)   
19-Dec-2014 19:42:57 Checking out files:  35% (1028/2937)   
19-Dec-2014 19:42:58 Checking out files:  36% (1058/2937)   
19-Dec-2014 19:42:58 Checking out files:  37% (1087/2937)   
19-Dec-2014 19:42:58 Checking out files:  38% (1117/2937)   
19-Dec-2014 19:42:58 Checking out files:  39% (1146/2937)   
19-Dec-2014 19:42:58 Checking out files:  40% (1175/2937)   
19-Dec-2014 19:42:58 Checking out files:  41% (1205/2937)   
19-Dec-2014 19:42:58 Checking out files:  42% (1234/2937)   
19-Dec-2014 19:42:58 Checking out files:  43% (1263/2937)   
19-Dec-2014 19:42:58 Checking out files:  44% (1293/2937)   
19-Dec-2014 19:42:58 Checking out files:  45% (1322/2937)   
19-Dec-2014 19:42:58 Checking out files:  45% (1347/2937)   
19-Dec-2014 19:42:58 Checking out files:  46% (1352/2937)   
19-Dec-2014 19:42:58 Checking out files:  47% (1381/2937)   
19-Dec-2014 19:42:58 Checking out files:  48% (1410/2937)   
19-Dec-2014 19:42:58 Checking out files:  49% (1440/2937)   
19-Dec-2014 19:42:58 Checking out files:  50% (1469/2937)   
19-Dec-2014 19:42:58 Checking out files:  51% (1498/2937)   
19-Dec-2014 19:42:59 Checking out files:  52% (1528/2937)   
19-Dec-2014 19:42:59 Checking out files:  53% (1557/2937)   
19-Dec-2014 19:42:59 Checking out files:  54% (1586/2937)   
19-Dec-2014 19:43:00 Checking out files:  55% (1616/2937)   
19-Dec-2014 19:43:00 Checking out files:  56% (1645/2937)   
19-Dec-2014 19:43:00 Checking out files:  56% (1657/2937)   
19-Dec-2014 19:43:00 Checking out files:  57% (1675/2937)   
19-Dec-2014 19:43:00 Checking out files:  58% (1704/2937)   
19-Dec-2014 19:43:00 Checking out files:  59% (1733/2937)   
19-Dec-2014 19:43:00 Checking out files:  60% (1763/2937)   
19-Dec-2014 19:43:01 Checking out files:  61% (1792/2937)   
19-Dec-2014 19:43:01 Checking out files:  62% (1821/2937)   
19-Dec-2014 19:43:01 Checking out files:  63% (1851/2937)   
19-Dec-2014 19:43:01 Checking out files:  64% (1880/2937)   
19-Dec-2014 19:43:01 Checking out files:  65% (1910/2937)   
19-Dec-2014 19:43:01 Checking out files:  66% (1939/2937)   
19-Dec-2014 19:43:01 Checking out files:  67% (1968/2937)   
19-Dec-2014 19:43:01 Checking out files:  68% (1998/2937)   
19-Dec-2014 19:43:02 Checking out files:  69% (2027/2937)   
19-Dec-2014 19:43:02 Checking out files:  70% (2056/2937)   
19-Dec-2014 19:43:02 Checking out files:  71% (2086/2937)   
19-Dec-2014 19:43:02 Checking out files:  72% (2115/2937)   
19-Dec-2014 19:43:02 Checking out files:  73% (2145/2937)   
19-Dec-2014 19:43:02 Checking out files:  74% (2174/2937)   
19-Dec-2014 19:43:02 Checking out files:  75% (2203/2937)   
19-Dec-2014 19:43:02 Checking out files:  76% (2233/2937)   
19-Dec-2014 19:43:02 Checking out files:  77% (2262/2937)   
19-Dec-2014 19:43:02 Checking out files:  78% (2291/2937)   
19-Dec-2014 19:43:02 Checking out files:  79% (2321/2937)   
19-Dec-2014 19:43:02 Checking out files:  80% (2350/2937)   
19-Dec-2014 19:43:02 Checking out files:  81% (2379/2937)   
19-Dec-2014 19:43:02 Checking out files:  82% (2409/2937)   
19-Dec-2014 19:43:02 Checking out files:  82% (2424/2937)   
19-Dec-2014 19:43:02 Checking out files:  83% (2438/2937)   
19-Dec-2014 19:43:02 Checking out files:  84% (2468/2937)   
19-Dec-2014 19:43:02 Checking out files:  85% (2497/2937)   
19-Dec-2014 19:43:03 Checking out files:  86% (2526/2937)   
19-Dec-2014 19:43:03 Checking out files:  87% (2556/2937)   
19-Dec-2014 19:43:03 Checking out files:  87% (2583/2937)   
19-Dec-2014 19:43:03 Checking out files:  88% (2585/2937)   
19-Dec-2014 19:43:03 Checking out files:  89% (2614/2937)   
19-Dec-2014 19:43:03 Checking out files:  90% (2644/2937)   
19-Dec-2014 19:43:03 Checking out files:  91% (2673/2937)   
19-Dec-2014 19:43:03 Checking out files:  92% (2703/2937)   
19-Dec-2014 19:43:03 Checking out files:  93% (2732/2937)   
19-Dec-2014 19:43:03 Checking out files:  94% (2761/2937)   
19-Dec-2014 19:43:03 Checking out files:  95% (2791/2937)   
19-Dec-2014 19:43:03 Checking out files:  96% (2820/2937)   
19-Dec-2014 19:43:04 Checking out files:  97% (2849/2937)   
19-Dec-2014 19:43:04 Checking out files:  97% (2860/2937)   
19-Dec-2014 19:43:04 Checking out files:  98% (2879/2937)   
19-Dec-2014 19:43:04 Checking out files:  99% (2908/2937)   
19-Dec-2014 19:43:04 Checking out files: 100% (2937/2937)   
19-Dec-2014 19:43:04 Checking out files: 100% (2937/2937), done.
19-Dec-2014 19:43:04 Already on 'master'
19-Dec-2014 19:43:05 Updated source code to revision: 0b0c4e05e8f4518f20b5ff7ffd272304deeab48e
19-Dec-2014 19:43:05 Finished task 'Source Code Checkout' with result: Success
19-Dec-2014 19:43:05 Running pre-build action: VCS Version Collector
19-Dec-2014 19:43:05 Running pre-build action: Clover Grails PreBuild Action
19-Dec-2014 19:43:05
Substituting variable: ${bamboo.repository.branch.name} with master
19-Dec-2014 19:43:05
Substituting variable: ${bamboo.buildNumber} with 94
19-Dec-2014 19:43:05 Starting task 'Web App' of type 'com.atlassian.bamboo.plugins.ant:task.builder.ant'
19-Dec-2014 19:43:05
Beginning to execute external process for build 'MMDB - Medici 1 GWT - default #94 (MMDB-MEDICI-JOB1-94)'
... running command line:
/home/bamboo/apache-ant-1.9.4/bin/ant -Djava.io.tmpdir=/tmp/MMDB-MEDICI-JOB1 bamboo -Dbamboo.version="master#94"
... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web
... using extra environment variables:
bamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build
bamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_05
bamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41
bamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm
bamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60
JAVA_HOME=/home/bamboo/jdk1.7.0_60
bamboo_repository_18841602_previous_revision_number=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e
bamboo_planRepository_type=git
bamboo_shortPlanName=Medici 1 GWT
bamboo_capability_system_software_mongo=/usr/bin/mongo
bamboo_planKey=MMDB-MEDICI
bamboo_repository_git_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git
bamboo_planRepository_1_branchName=master
bamboo_repository_18841602_git_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/cbi/cet.git
bamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster
bamboo_repository_34635787_previous_revision_number=2812f29b30ce2a1b5bdf5288b994732fc8f587b3
bamboo_shortPlanKey=MEDICI
bamboo_shortJobKey=JOB1
bamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1
bamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt
bamboo_planRepository_1_branch=master
bamboo_repository_revision_number=be4a91e17aec92deb8437557b40e29ab99a26c72
bamboo_repository_18841602_name=cet
bamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.2.1
bamboo_planRepository_2_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/cbi/cet.git
bamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs
bamboo_planName=MMDB - Medici 1 GWT
bamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/MMDB-MEDICI-JOB1-94
bamboo_capability_system_jdk_JDK_1_7_0_60=/home/bamboo/jdk1.7.0_60
bamboo_buildResultKey=MMDB-MEDICI-JOB1-94
bamboo_planRepository_revision=be4a91e17aec92deb8437557b40e29ab99a26c72
bamboo_repository_git_username=
bamboo_buildKey=MMDB-MEDICI-JOB1
bamboo_repository_previous_revision_number=2812f29b30ce2a1b5bdf5288b994732fc8f587b3
bamboo_capability_system_git_executable=/usr/bin/git
bamboo_repository_34635787_git_branch=master
bamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1
bamboo_repository_18841602_revision_number=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e
bamboo_repository_18841602_git_username=
bamboo_planRepository_2_previousRevision=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e
bamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir
bamboo_buildPlanName=MMDB - Medici 1 GWT - default
bamboo_repository_name=cet
bamboo_planRepository_2_revision=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e
bamboo_repository_18841602_git_branch=master
bamboo_repository_34635787_git_username=
bamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/MMDB-MEDICI-JOB1-94
bamboo_repository_34635787_revision_number=be4a91e17aec92deb8437557b40e29ab99a26c72
bamboo_system_getTestsToPass=
bamboo_planRepository_1_revision=be4a91e17aec92deb8437557b40e29ab99a26c72
bamboo_repository_git_branch=master
bamboo_planRepository_2_branch=master
bamboo_planRepository_1_previousRevision=2812f29b30ce2a1b5bdf5288b994732fc8f587b3
bamboo_planRepository_1_type=git
bamboo_repository_18841602_branch_name=master
bamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt
bamboo_planRepository_1_name=medici-gwt-web
bamboo_planRepository_branch=master
bamboo_planRepository_2_branchName=master
bamboo_repository_34635787_name=medici-gwt-web
bamboo_planRepository_username=
bamboo_planRepository_branchName=master
bamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.7.0_60
bamboo_capability_system_os=linux
bamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1
bamboo_repository_34635787_branch_name=master
bamboo_shortJobName=default
bamboo_repository_branch_name=master
bamboo_agentId=57573377
bamboo_planRepository_previousRevision=2812f29b30ce2a1b5bdf5288b994732fc8f587b3
bamboo_planRepository_1_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git
bamboo_planRepository_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git
bamboo_planRepository_2_type=git
bamboo_repository_34635787_git_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git
ANT_HOME=/home/bamboo/apache-ant-1.9.4
bamboo_planRepository_2_name=cet
bamboo_planRepository_1_username=
bamboo_planRepository_2_username=
bamboo_planRepository_name=medici-gwt-web
bamboo_buildNumber=94
bamboo_capability_system_hostname=buildserver-2
bamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs
bamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4
bamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl
bamboo_buildTimeStamp=2014-12-19T19:42:21.593-06:00
PATH=/home/bamboo/jdk1.7.0_60/bin:/home/bamboo/jdk1.7.0_60/bin:/home/bamboo/node-v0.10.28/bin:/usr/bin:/bin
19-Dec-2014 19:43:05 Buildfile: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/build.xml
19-Dec-2014 19:43:06
19-Dec-2014 19:43:06 cetbean:
19-Dec-2014 19:43:06     [mkdir] Created dir: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/beanclass
19-Dec-2014 19:43:06     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/build.xml:85: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds
19-Dec-2014 19:43:06     [javac] Compiling 65 source files to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/beanclass
19-Dec-2014 19:43:07     [javac] warning: [options] bootstrap class path not set in conjunction with -source 1.5
19-Dec-2014 19:43:08     [javac] 1 warning
19-Dec-2014 19:43:08       [jar] Building jar: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/WEB-INF/lib/cet-bean.jar
19-Dec-2014 19:43:08    [delete] Deleting directory /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/beanclass
19-Dec-2014 19:43:08     [mkdir] Created dir: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/beanclass
19-Dec-2014 19:43:08     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/build.xml:100: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds
19-Dec-2014 19:43:08     [javac] Compiling 97 source files to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/beanclass
19-Dec-2014 19:43:08     [javac] warning: [options] bootstrap class path not set in conjunction with -source 1.5
19-Dec-2014 19:43:09     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/SHAPasswordDigest.java:48: warning: BASE64Encoder is internal proprietary API and may be removed in a future release
19-Dec-2014 19:43:09     [javac] import sun.misc.BASE64Encoder;
19-Dec-2014 19:43:09     [javac]                ^
19-Dec-2014 19:43:10     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/DatasetBeanUtil.java:66: warning: [deprecation] DATASET in Cet has been deprecated
19-Dec-2014 19:43:10     [javac]         return Cet.DATASET;
19-Dec-2014 19:43:10     [javac]                   ^
19-Dec-2014 19:43:10     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/TagEventBeanUtil.java:72: warning: [deprecation] encode(String) in URLEncoder has been deprecated
19-Dec-2014 19:43:10     [javac]         return Resource.uriRef("tag:cet.ncsa.uiuc.edu,2008:/tag#" + URLEncoder.encode(tag)); //$NON-NLS-1$
19-Dec-2014 19:43:10     [javac]                                                                               ^
19-Dec-2014 19:43:11     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/VisualizationBeanUtil.java:73: warning: [deprecation] clone(T,PersonBean) in TupeloBeanUtil has been deprecated
19-Dec-2014 19:43:11     [javac]     public VisualizationBean clone(VisualizationBean bean, PersonBean creator)
19-Dec-2014 19:43:11     [javac]                              ^
19-Dec-2014 19:43:11     [javac]   where T is a type-variable:
19-Dec-2014 19:43:11     [javac]     T extends CETBean declared in class TupeloBeanUtil
19-Dec-2014 19:43:11     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/VisualizationBeanUtil.java:83: warning: [deprecation] clone(ConfigurationBean,PersonBean) in ConfigurationBeanUtil has been deprecated
19-Dec-2014 19:43:11     [javac]             ConfigurationBean configuration = cbu.clone(bean.getConfiguration(), creator);
19-Dec-2014 19:43:11     [javac]                                                  ^
19-Dec-2014 19:43:11     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/RBAC.java:442: warning: [deprecation] ADMIN_ROLE in MMDB has been deprecated
19-Dec-2014 19:43:11     [javac]             if (!t.getObject().equals(MMDB.ADMIN_ROLE) && !t.getObject().equals(MMDB.REGULAR_MEMBER_ROLE)) {
19-Dec-2014 19:43:11     [javac]                                           ^
19-Dec-2014 19:43:11     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/RBAC.java:442: warning: [deprecation] REGULAR_MEMBER_ROLE in MMDB has been deprecated
19-Dec-2014 19:43:11     [javac]             if (!t.getObject().equals(MMDB.ADMIN_ROLE) && !t.getObject().equals(MMDB.REGULAR_MEMBER_ROLE)) {
19-Dec-2014 19:43:11     [javac]                                                                                     ^
19-Dec-2014 19:43:11     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/RBAC.java:452: warning: [deprecation] ADMIN_ROLE in MMDB has been deprecated
19-Dec-2014 19:43:11     [javac]         createRole(MMDB.ADMIN_ROLE, "Administrator");
19-Dec-2014 19:43:11     [javac]                        ^
19-Dec-2014 19:43:11     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/RBAC.java:453: warning: [deprecation] REGULAR_MEMBER_ROLE in MMDB has been deprecated
19-Dec-2014 19:43:11     [javac]         createRole(MMDB.REGULAR_MEMBER_ROLE, "Member");
19-Dec-2014 19:43:11     [javac]                        ^
19-Dec-2014 19:43:11     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/SHAPasswordDigest.java:78: warning: BASE64Encoder is internal proprietary API and may be removed in a future release
19-Dec-2014 19:43:11     [javac]         BASE64Encoder encoder = new BASE64Encoder();
19-Dec-2014 19:43:11     [javac]         ^
19-Dec-2014 19:43:11     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/SHAPasswordDigest.java:78: warning: BASE64Encoder is internal proprietary API and may be removed in a future release
19-Dec-2014 19:43:11     [javac]         BASE64Encoder encoder = new BASE64Encoder();
19-Dec-2014 19:43:11     [javac]                                     ^
19-Dec-2014 19:43:11     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/workflow/Cyberintegrator.java:57: warning: [deprecation] DATASET in Cet has been deprecated
19-Dec-2014 19:43:11     [javac]     static final public Resource DATASET                = Cet.DATASET;
19-Dec-2014 19:43:11     [javac]                                                              ^
19-Dec-2014 19:43:11     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/workflow/dao/WorkflowStepDAO.java:28: warning: [deprecation] Rdf in Vocabulary has been deprecated
19-Dec-2014 19:43:11     [javac]         uf.addPattern(new Pattern("data", Vocabulary.Rdf.TYPE, Cyberintegrator.PARAMETER)); //$NON-NLS-1$
19-Dec-2014 19:43:11     [javac]                                                     ^
19-Dec-2014 19:43:11     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/workflow/dao/WorkflowStepDAO.java:40: warning: [deprecation] Rdf in Vocabulary has been deprecated
19-Dec-2014 19:43:11     [javac]         uf.addPattern(new Pattern("data", Vocabulary.Rdf.TYPE, Cyberintegrator.PARAMETER)); //$NON-NLS-1$
19-Dec-2014 19:43:11     [javac]                                                     ^
19-Dec-2014 19:43:11     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/workflow/dao/WorkflowStepDAO.java:58: warning: [deprecation] Rdf in Vocabulary has been deprecated
19-Dec-2014 19:43:11     [javac]         uf.addPattern(new Pattern("input", Vocabulary.Rdf.TYPE, Cyberintegrator.DATASET)); //$NON-NLS-1$
19-Dec-2014 19:43:11     [javac]                                                      ^
19-Dec-2014 19:43:11     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/workflow/dao/WorkflowStepDAO.java:82: warning: [deprecation] Rdf in Vocabulary has been deprecated
19-Dec-2014 19:43:11     [javac]         uf.addPattern(new Pattern("output", Vocabulary.Rdf.TYPE, Cyberintegrator.DATASET)); //$NON-NLS-1$
19-Dec-2014 19:43:11     [javac]                                                       ^
19-Dec-2014 19:43:11     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/workflow/dao/WorkflowToolDataDAO.java:26: warning: [deprecation] Rdf in Vocabulary has been deprecated
19-Dec-2014 19:43:11     [javac]         uf.addPattern(new Pattern("data", Vocabulary.Rdf.TYPE, Cyberintegrator.TOOL_DATA)); //$NON-NLS-1$
19-Dec-2014 19:43:11     [javac]                                                     ^
19-Dec-2014 19:43:11     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/workflow/dao/WorkflowToolDataDAO.java:41: warning: [deprecation] Rdf in Vocabulary has been deprecated
19-Dec-2014 19:43:11     [javac]         uf.addPattern(new Pattern("data", Vocabulary.Rdf.TYPE, Cyberintegrator.TOOL_DATA)); //$NON-NLS-1$
19-Dec-2014 19:43:11     [javac]                                                     ^
19-Dec-2014 19:43:11     [javac] 19 warnings
19-Dec-2014 19:43:11       [jar] Building jar: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/WEB-INF/lib/cet-bean-tupelo.jar
19-Dec-2014 19:43:11    [delete] Deleting directory /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/beanclass
19-Dec-2014 19:43:11
19-Dec-2014 19:43:11 updateversion:
19-Dec-2014 19:43:11
19-Dec-2014 19:43:11 clean:
19-Dec-2014 19:43:11
19-Dec-2014 19:43:11 compile:
19-Dec-2014 19:43:11     [mkdir] Created dir: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/WEB-INF/classes
19-Dec-2014 19:43:11     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/build.xml:127: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds
19-Dec-2014 19:43:11     [javac] Compiling 526 source files to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/WEB-INF/classes
19-Dec-2014 19:43:12     [javac] warning: [options] bootstrap class path not set in conjunction with -source 1.5
19-Dec-2014 19:43:12     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/LoginPage.java:63: warning: [deprecation] DeferredCommand in com.google.gwt.user.client has been deprecated
19-Dec-2014 19:43:12     [javac] import com.google.gwt.user.client.DeferredCommand;
19-Dec-2014 19:43:12     [javac]                                  ^
19-Dec-2014 19:43:12     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/SignupPage.java:53: warning: [deprecation] DeferredCommand in com.google.gwt.user.client has been deprecated
19-Dec-2014 19:43:12     [javac] import com.google.gwt.user.client.DeferredCommand;
19-Dec-2014 19:43:12     [javac]                                  ^
19-Dec-2014 19:43:12     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/TagsWidget.java:56: warning: [deprecation] DeferredCommand in com.google.gwt.user.client has been deprecated
19-Dec-2014 19:43:12     [javac] import com.google.gwt.user.client.DeferredCommand;
19-Dec-2014 19:43:12     [javac]                                  ^
19-Dec-2014 19:43:12     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/view/TextDialogView.java:46: warning: [deprecation] DeferredCommand in com.google.gwt.user.client has been deprecated
19-Dec-2014 19:43:12     [javac] import com.google.gwt.user.client.DeferredCommand;
19-Dec-2014 19:43:12     [javac]                                  ^
19-Dec-2014 19:43:12     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/view/TagDialogViewWSuggest.java:46: warning: [deprecation] DeferredCommand in com.google.gwt.user.client has been deprecated
19-Dec-2014 19:43:12     [javac] import com.google.gwt.user.client.DeferredCommand;
19-Dec-2014 19:43:12     [javac]                                  ^
19-Dec-2014 19:43:13     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/DatasetTableFourColumnView.java:63: warning: [deprecation] getShortDateTimeFormat() in DateTimeFormat has been deprecated
19-Dec-2014 19:43:13     [javac]     private final static DateTimeFormat DATE_TIME_FORMAT = DateTimeFormat.getShortDateTimeFormat();
19-Dec-2014 19:43:13     [javac]                                                                          ^
19-Dec-2014 19:43:13     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/DatasetTableOneColumnView.java:83: warning: [deprecation] getShortDateTimeFormat() in DateTimeFormat has been deprecated
19-Dec-2014 19:43:13     [javac]     private final static DateTimeFormat DATE_TIME_FORMAT = DateTimeFormat.getShortDateTimeFormat();
19-Dec-2014 19:43:13     [javac]                                                                          ^
19-Dec-2014 19:43:13     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/MMDB.java:444: warning: [deprecation] decodeComponent(String) in URL has been deprecated
19-Dec-2014 19:43:13     [javac]                     params.put(URL.decodeComponent(terms[0]), URL.decodeComponent(terms[1]));
19-Dec-2014 19:43:13     [javac]                                   ^
19-Dec-2014 19:43:13     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/MMDB.java:444: warning: [deprecation] decodeComponent(String) in URL has been deprecated
19-Dec-2014 19:43:13     [javac]                     params.put(URL.decodeComponent(terms[0]), URL.decodeComponent(terms[1]));
19-Dec-2014 19:43:13     [javac]                                                                  ^
19-Dec-2014 19:43:13     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/UploadWidget.java:92: warning: [deprecation] parse(String) in JSONParser has been deprecated
19-Dec-2014 19:43:13     [javac]                 JSONValue value = JSONParser.parse(jsonText);
19-Dec-2014 19:43:13     [javac]                                             ^
19-Dec-2014 19:43:14     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/AnnotationView.java:104: warning: [deprecation] getMediumDateFormat() in DateTimeFormat has been deprecated
19-Dec-2014 19:43:14     [javac]             mediumDate = DateTimeFormat.getMediumDateFormat().format(
19-Dec-2014 19:43:14     [javac]                                        ^
19-Dec-2014 19:43:14     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/AnnotationView.java:107: warning: [deprecation] getShortTimeFormat() in DateTimeFormat has been deprecated
19-Dec-2014 19:43:14     [javac]             shortTime = DateTimeFormat.getShortTimeFormat().format(
19-Dec-2014 19:43:14     [javac]                                       ^
19-Dec-2014 19:43:14     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/CollectionInfoWidget.java:106: warning: [deprecation] getLongDateFormat() in DateTimeFormat has been deprecated
19-Dec-2014 19:43:14     [javac]         descriptionPanel.add(new Label(DateTimeFormat.getLongDateFormat().format(collection.getCreationDate())));
19-Dec-2014 19:43:14     [javac]                                                      ^
19-Dec-2014 19:43:14     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/CollectionPage.java:398: warning: [deprecation] getFullDateFormat() in DateTimeFormat has been deprecated
19-Dec-2014 19:43:14     [javac]             DateTimeFormat formatter = DateTimeFormat.getFullDateFormat();
19-Dec-2014 19:43:14     [javac]                                                      ^
19-Dec-2014 19:43:14     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/TitlePanel.java:68: warning: [deprecation] DeferredCommand in com.google.gwt.user.client has been deprecated
19-Dec-2014 19:43:14     [javac]         public TitlePanel(String title) {
19-Dec-2014 19:43:14     [javac]                ^
19-Dec-2014 19:43:14     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/EditableLabel.java:161: warning: [deprecation] DeferredCommand in com.google.gwt.user.client has been deprecated
19-Dec-2014 19:43:14     [javac]         DeferredCommand.addCommand(new Command() {
19-Dec-2014 19:43:14     [javac]         ^
19-Dec-2014 19:43:14     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/DatasetInfoWidget.java:107: warning: [deprecation] getLongDateFormat() in DateTimeFormat has been deprecated
19-Dec-2014 19:43:14     [javac]         descriptionPanel.add(new Label(DateTimeFormat.getLongDateFormat().format(dataset.getDate())));
19-Dec-2014 19:43:14     [javac]                                                      ^
19-Dec-2014 19:43:14     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/DatasetWidget.java:597: warning: [deprecation] toLocaleString() in Date has been deprecated
19-Dec-2014 19:43:14     [javac]                                     userViewTable.setText(row, 0, ua.getWhen().toLocaleString());
19-Dec-2014 19:43:14     [javac]                                                                               ^
19-Dec-2014 19:43:14     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/InfoWidget.java:162: warning: [deprecation] getShortDateTimeFormat() in DateTimeFormat has been deprecated
19-Dec-2014 19:43:14     [javac]             date += DateTimeFormat.getShortDateTimeFormat().format(data.getDate());
19-Dec-2014 19:43:14     [javac]                                   ^
19-Dec-2014 19:43:14     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/LoginPage.java:173: warning: [deprecation] DeferredCommand in com.google.gwt.user.client has been deprecated
19-Dec-2014 19:43:14     [javac]         DeferredCommand.addCommand(new Command() {
19-Dec-2014 19:43:14     [javac]         ^
19-Dec-2014 19:43:14     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/MapPage.java:165: warning: [deprecation] getShortDateFormat() in DateTimeFormat has been deprecated
19-Dec-2014 19:43:14     [javac]         mainPanel.setText(2, 1, DateTimeFormat.getShortDateFormat().format(dataset.getDate()));
19-Dec-2014 19:43:14     [javac]                                               ^
19-Dec-2014 19:43:14     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/SignupPage.java:206: warning: [deprecation] DeferredCommand in com.google.gwt.user.client has been deprecated
19-Dec-2014 19:43:14     [javac]         DeferredCommand.addCommand(new Command() {
19-Dec-2014 19:43:14     [javac]         ^
19-Dec-2014 19:43:14     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/TagsPage.java:105: warning: [deprecation] encodeComponent(String) in URL has been deprecated
19-Dec-2014 19:43:14     [javac]                                 Hyperlink link = new Hyperlink(linkText, "tag?title=" + URL.encodeComponent(tag));
19-Dec-2014 19:43:14     [javac]                                                                                            ^
19-Dec-2014 19:43:14     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/TagsWidget.java:167: warning: [deprecation] DeferredCommand in com.google.gwt.user.client has been deprecated
19-Dec-2014 19:43:14     [javac]                         DeferredCommand.addCommand(new Command() {
19-Dec-2014 19:43:14     [javac]                         ^
19-Dec-2014 19:43:14     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/preview/PreviewGeoCollectionBeanWidget.java:224: warning: [deprecation] getShortDateFormat() in DateTimeFormat has been deprecated
19-Dec-2014 19:43:14     [javac]         html += "<tr><td>Uploaded:</td><td>" + DateTimeFormat.getShortDateFormat().format(dataset.getDate()) + "</td></tr>";
19-Dec-2014 19:43:14     [javac]                                                              ^
19-Dec-2014 19:43:14     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/preview/PreviewPyramidBeanWidget.java:56: warning: [deprecation] encodeComponent(String) in URL has been deprecated
19-Dec-2014 19:43:14     [javac]         showSeadragon(RestEndpoints.PYRAMID_URL + URL.encodeComponent(getPreviewBean().getUri()) + "/xml", getWidgetID()); //$NON-NLS-1$
19-Dec-2014 19:43:14     [javac]                                                      ^
19-Dec-2014 19:43:14     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/view/TextDialogView.java:100: warning: [deprecation] DeferredCommand in com.google.gwt.user.client has been deprecated
19-Dec-2014 19:43:14     [javac]         DeferredCommand.addCommand(new Command() {
19-Dec-2014 19:43:14     [javac]         ^
19-Dec-2014 19:43:14     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/view/DynamicGridView.java:73: warning: [deprecation] getShortDateTimeFormat() in DateTimeFormat has been deprecated
19-Dec-2014 19:43:14     [javac]     private final static DateTimeFormat           DATE_TIME_FORMAT  = DateTimeFormat.getShortDateTimeFormat();
19-Dec-2014 19:43:14     [javac]                                                                                     ^
19-Dec-2014 19:43:14     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/view/DynamicGridView.java:152: warning: [deprecation] getShortDateFormat() in DateTimeFormat has been deprecated
19-Dec-2014 19:43:14     [javac]         Label dateuploaded = new Label(DateTimeFormat.getShortDateFormat().format(date));
19-Dec-2014 19:43:14     [javac]                                                      ^
19-Dec-2014 19:43:14     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/view/DynamicListView.java:67: warning: [deprecation] getShortDateTimeFormat() in DateTimeFormat has been deprecated
19-Dec-2014 19:43:14     [javac]     private final static DateTimeFormat DATE_TIME_FORMAT  = DateTimeFormat.getShortDateTimeFormat();
19-Dec-2014 19:43:14     [javac]                                                                           ^
19-Dec-2014 19:43:14     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/view/DynamicListView.java:136: warning: [deprecation] getMediumDateTimeFormat() in DateTimeFormat has been deprecated
19-Dec-2014 19:43:14     [javac]         informationPanel.setWidget(2, 0, new Label(DateTimeFormat.getMediumDateTimeFormat().format(date)));
19-Dec-2014 19:43:14     [javac]                                                                  ^
19-Dec-2014 19:43:15     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/view/TagDialogViewWSuggest.java:106: warning: [deprecation] DeferredCommand in com.google.gwt.user.client has been deprecated
19-Dec-2014 19:43:15     [javac]         DeferredCommand.addCommand(new Command() {
19-Dec-2014 19:43:15     [javac]         ^
19-Dec-2014 19:43:15     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/rest/RestServlet.java:599: warning: [deprecation] Date(String) in Date has been deprecated
19-Dec-2014 19:43:15     [javac]                         Date d = new Date(request.getHeader("If-Modified-Since"));
19-Dec-2014 19:43:15     [javac]                                  ^
19-Dec-2014 19:43:15     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/rest/RssServlet.java:97: warning: [deprecation] DATASET in Cet has been deprecated
19-Dec-2014 19:43:15     [javac]                 u.addPattern("s", Rdf.TYPE, Cet.DATASET);
19-Dec-2014 19:43:15     [javac]                                                ^
19-Dec-2014 19:43:15     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/AccessControl.java:92: warning: [deprecation] VIEW_ADMIN_PAGES in MMDB has been deprecated
19-Dec-2014 19:43:15     [javac]             return rbac.checkPermission(Resource.uriRef(personUri), MMDB.VIEW_ADMIN_PAGES);
19-Dec-2014 19:43:15     [javac]                                                                         ^
19-Dec-2014 19:43:15     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/ContextSetupListener.java:614: warning: [deprecation] addUser(String,String,String,String) in ContextAuthentication has been deprecated
19-Dec-2014 19:43:15     [javac]                         userid = auth.addUser(username, email, fullname, password);
19-Dec-2014 19:43:15     [javac]                                      ^
19-Dec-2014 19:43:15     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/DatasourceBeanPreprocessor.java:125: warning: [deprecation] DATASET in Cet has been deprecated
19-Dec-2014 19:43:15     [javac]             uf.addPattern("s", Rdf.TYPE, Cet.DATASET);
19-Dec-2014 19:43:15     [javac]                                             ^
19-Dec-2014 19:43:15     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/PermissionResourceMap.java:63: warning: [deprecation] VIEW_ADMIN_PAGES in MMDB has been deprecated
19-Dec-2014 19:43:15     [javac]         map.put(Permission.VIEW_ADMIN_PAGES, MMDB.VIEW_ADMIN_PAGES);
19-Dec-2014 19:43:15     [javac]                                                  ^
19-Dec-2014 19:43:15     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/PermissionResourceMap.java:64: warning: [deprecation] VIEW_MEMBER_PAGES in MMDB has been deprecated
19-Dec-2014 19:43:15     [javac]         map.put(Permission.VIEW_MEMBER_PAGES, MMDB.VIEW_MEMBER_PAGES);
19-Dec-2014 19:43:15     [javac]                                                   ^
19-Dec-2014 19:43:15     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/RoleResourceMap.java:64: warning: [deprecation] ADMIN_ROLE in MMDB has been deprecated
19-Dec-2014 19:43:15     [javac]         toResource.put(Role.ADMIN, MMDB.ADMIN_ROLE);
19-Dec-2014 19:43:15     [javac]                                        ^
19-Dec-2014 19:43:15     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/RoleResourceMap.java:65: warning: [deprecation] REGULAR_MEMBER_ROLE in MMDB has been deprecated
19-Dec-2014 19:43:15     [javac]         toResource.put(Role.MEMBER, MMDB.REGULAR_MEMBER_ROLE);
19-Dec-2014 19:43:15     [javac]                                         ^
19-Dec-2014 19:43:15     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/RoleResourceMap.java:68: warning: [deprecation] ADMIN_ROLE in MMDB has been deprecated
19-Dec-2014 19:43:15     [javac]         toRole.put(MMDB.ADMIN_ROLE, Role.ADMIN);
19-Dec-2014 19:43:15     [javac]                        ^
19-Dec-2014 19:43:15     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/RoleResourceMap.java:69: warning: [deprecation] REGULAR_MEMBER_ROLE in MMDB has been deprecated
19-Dec-2014 19:43:15     [javac]         toRole.put(MMDB.REGULAR_MEMBER_ROLE, Role.MEMBER);
19-Dec-2014 19:43:15     [javac]                        ^
19-Dec-2014 19:43:15     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/TupeloStore.java:540: warning: [deprecation] DATASET in Cet has been deprecated
19-Dec-2014 19:43:15     [javac]                     } else if (Cet.DATASET.equals(type)) {
19-Dec-2014 19:43:15     [javac]                                   ^
19-Dec-2014 19:43:15     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/TupeloStore.java:637: warning: [deprecation] DATASET in Cet has been deprecated
19-Dec-2014 19:43:15     [javac]                         u.addPattern("descriptor", Rdf.TYPE, Cet.DATASET);
19-Dec-2014 19:43:15     [javac]                                                                 ^
19-Dec-2014 19:43:15     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/TupeloStore.java:661: warning: [deprecation] DATASET in Cet has been deprecated
19-Dec-2014 19:43:15     [javac]                         u.addPattern("member", Rdf.TYPE, Cet.DATASET);
19-Dec-2014 19:43:15     [javac]                                                             ^
19-Dec-2014 19:43:15     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/TupeloStore.java:945: warning: [deprecation] DATASET in Cet has been deprecated
19-Dec-2014 19:43:15     [javac]             u.addPattern("d", Rdf.TYPE, Cet.DATASET);
19-Dec-2014 19:43:15     [javac]                                            ^
19-Dec-2014 19:43:15     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/UploadBlob.java:408: warning: [deprecation] DATASET in Cet has been deprecated
19-Dec-2014 19:43:15     [javac]                         t.addType(Cet.DATASET);
19-Dec-2014 19:43:15     [javac]                                      ^
19-Dec-2014 19:43:15     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/dispatch/AnnotateResourceHandler.java:84: warning: [deprecation] getId() in AnnotateResource has been deprecated
19-Dec-2014 19:43:15     [javac]         String resource = arg0.getId();
19-Dec-2014 19:43:15     [javac]                               ^
19-Dec-2014 19:43:15     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/dispatch/GeoSearchHandler.java:89: warning: [deprecation] DATASET in Cet has been deprecated
19-Dec-2014 19:43:15     [javac]         u.addPattern("d", Rdf.TYPE, Cet.DATASET);
19-Dec-2014 19:43:15     [javac]                                        ^
19-Dec-2014 19:43:15     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/dispatch/GetCollectionHandler.java:289: warning: [deprecation] DATASET in Cet has been deprecated
19-Dec-2014 19:43:15     [javac]         u.addPattern("s", Rdf.TYPE, Cet.DATASET);
19-Dec-2014 19:43:15     [javac]                                        ^
19-Dec-2014 19:43:15     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/dispatch/GetCollectionHandler.java:329: warning: [deprecation] DATASET in Cet has been deprecated
19-Dec-2014 19:43:15     [javac]                 if (Cet.DATASET.equals(row.get(1)) && !row.get(5).getString().equals(user)) {
19-Dec-2014 19:43:15     [javac]                        ^
19-Dec-2014 19:43:15     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/dispatch/GetDatasetsByTagHandler.java:95: warning: [deprecation] DATASET in Cet has been deprecated
19-Dec-2014 19:43:15     [javac]         uf.addPattern("dataset", Rdf.TYPE, Cet.DATASET);
19-Dec-2014 19:43:15     [javac]                                               ^
19-Dec-2014 19:43:15     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/dispatch/GetDerivedFromHandler.java:92: warning: [deprecation] DATASET in Cet has been deprecated
19-Dec-2014 19:43:15     [javac]                         u.addPattern("input", Rdf.TYPE, Cet.DATASET);
19-Dec-2014 19:43:15     [javac]                                                            ^
19-Dec-2014 19:43:15     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/dispatch/GetRecentActivityHandler.java:98: warning: [deprecation] DATASET in Cet has been deprecated
19-Dec-2014 19:43:15     [javac]         uf.addPattern("dataset", Rdf.TYPE, Cet.DATASET);
19-Dec-2014 19:43:15     [javac]                                               ^
19-Dec-2014 19:43:15     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/dispatch/GetUsersHandler.java:110: warning: [deprecation] toLocaleString() in Date has been deprecated
19-Dec-2014 19:43:15     [javac]                         user.lastlogin = cal.getTime().toLocaleString();
19-Dec-2014 19:43:15     [javac]                                                       ^
19-Dec-2014 19:43:15     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/dispatch/ListQueryHandler.java:146: warning: [deprecation] DATASET in Cet has been deprecated
19-Dec-2014 19:43:15     [javac]                     if (!row.get(1).equals(Cet.DATASET) && !row.get(1).equals(CollectionBeanUtil.COLLECTION_TYPE)) {
19-Dec-2014 19:43:15     [javac]                                               ^
19-Dec-2014 19:43:15     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/dispatch/SystemInfoHandler.java:140: warning: [deprecation] DATASET in Cet has been deprecated
19-Dec-2014 19:43:15     [javac]                 if (Cet.DATASET.equals(row.get(1))) {
19-Dec-2014 19:43:15     [javac]                        ^
19-Dec-2014 19:43:15     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/ItemServicesImpl.java:938: warning: [deprecation] DATASET in Cet has been deprecated
19-Dec-2014 19:43:15     [javac]         if (itemType.equals(Cet.DATASET)) {
19-Dec-2014 19:43:15     [javac]                                ^
19-Dec-2014 19:43:15     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/CollectionsRestService.java:167: warning: [deprecation] DATASET in Cet has been deprecated
19-Dec-2014 19:43:15     [javac]         return addItemToCollection(id, item_id, Cet.DATASET, request);
19-Dec-2014 19:43:15     [javac]                                                    ^
19-Dec-2014 19:43:15     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/DatasetsRestService.java:310: warning: [deprecation] DATASET in Cet has been deprecated
19-Dec-2014 19:43:15     [javac]         return getTopLevelItems(Cet.DATASET, datasetBasics, userId);
19-Dec-2014 19:43:15     [javac]                                    ^
19-Dec-2014 19:43:15     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/DatasetsRestService.java:365: warning: [deprecation] DATASET in Cet has been deprecated
19-Dec-2014 19:43:15     [javac]                 ValidItem item = new ValidItem(itemId, Cet.DATASET, userId);
19-Dec-2014 19:43:15     [javac]                                                           ^
19-Dec-2014 19:43:15     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/DatasetsRestService.java:447: warning: [deprecation] DATASET in Cet has been deprecated
19-Dec-2014 19:43:15     [javac]         return markItemAsDeleted(id, Cet.DATASET, request);
19-Dec-2014 19:43:15     [javac]                                         ^
19-Dec-2014 19:43:15     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/DatasetsRestService.java:462: warning: [deprecation] DATASET in Cet has been deprecated
19-Dec-2014 19:43:15     [javac]         return getItemTagsByIdAsJSON(id, Cet.DATASET, request);
19-Dec-2014 19:43:15     [javac]                                             ^
19-Dec-2014 19:43:15     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/DatasetsRestService.java:477: warning: [deprecation] DATASET in Cet has been deprecated
19-Dec-2014 19:43:15     [javac]         return addTagsToItem(id, tags, Cet.DATASET, request);
19-Dec-2014 19:43:15     [javac]                                           ^
19-Dec-2014 19:43:15     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/DatasetsRestService.java:492: warning: [deprecation] DATASET in Cet has been deprecated
19-Dec-2014 19:43:15     [javac]         return deleteTagsFromItem(id, tags, Cet.DATASET, request);
19-Dec-2014 19:43:15     [javac]                                                ^
19-Dec-2014 19:43:15     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/DatasetsRestService.java:561: warning: [deprecation] DATASET in Cet has been deprecated
19-Dec-2014 19:43:15     [javac]         return getItemsByMetadata(pred, type, value, Cet.DATASET, request);
19-Dec-2014 19:43:15     [javac]                                                         ^
19-Dec-2014 19:43:15     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/DatasetsRestService.java:615: warning: [deprecation] DATASET in Cet has been deprecated
19-Dec-2014 19:43:15     [javac]         return getItemsThatAreGeoLayers(Cet.DATASET, null, request);
19-Dec-2014 19:43:15     [javac]                                            ^
19-Dec-2014 19:43:15     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/DatasetsRestService.java:631: warning: [deprecation] DATASET in Cet has been deprecated
19-Dec-2014 19:43:15     [javac]         return getItemsThatAreGeoFeatures(Cet.DATASET, null, request);
19-Dec-2014 19:43:15     [javac]                                              ^
19-Dec-2014 19:43:15     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/TagsRestService.java:105: warning: [deprecation] DATASET in Cet has been deprecated
19-Dec-2014 19:43:15     [javac]         return getMetadataByReverseRelationship((UriRef) TagEventBeanUtil.createTagUri(tag), Tags.TAGGED_WITH_TAG, datasetBasics, userId, Cet.DATASET);
19-Dec-2014 19:43:15     [javac]                                                                                                                                              ^
19-Dec-2014 19:43:15     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/TagsRestService.java:144: warning: [deprecation] DATASET in Cet has been deprecated
19-Dec-2014 19:43:15     [javac]         return getItemsThatAreGeoLayers(Cet.DATASET, (UriRef) TagEventBeanUtil.createTagUri(tagString), request);
19-Dec-2014 19:43:15     [javac]                                            ^
19-Dec-2014 19:43:15     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/TagsRestService.java:160: warning: [deprecation] DATASET in Cet has been deprecated
19-Dec-2014 19:43:15     [javac]         return getItemsThatAreGeoFeatures(Cet.DATASET, (UriRef) TagEventBeanUtil.createTagUri(tagString), request);
19-Dec-2014 19:43:15     [javac]                                              ^
19-Dec-2014 19:43:15     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/util/BeanFiller.java:116: warning: [deprecation] DATASET in Cet has been deprecated
19-Dec-2014 19:43:15     [javac]         t.addType(Cet.DATASET);
19-Dec-2014 19:43:15     [javac]                      ^
19-Dec-2014 19:43:15     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/webdav/CollectionBeanResource.java:114: warning: [deprecation] DATASET in Cet has been deprecated
19-Dec-2014 19:43:15     [javac]         uf.addPattern("data", Rdf.TYPE, Cet.DATASET); //$NON-NLS-1$
19-Dec-2014 19:43:15     [javac]                                            ^
19-Dec-2014 19:43:15     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/webdav/PersonBeanResource.java:99: warning: [deprecation] DATASET in Cet has been deprecated
19-Dec-2014 19:43:15     [javac]         uf.addPattern("data", Rdf.TYPE, Cet.DATASET); //$NON-NLS-1$
19-Dec-2014 19:43:15     [javac]                                            ^
19-Dec-2014 19:43:15     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/webdav/TagBeanResource.java:99: warning: [deprecation] DATASET in Cet has been deprecated
19-Dec-2014 19:43:15     [javac]         uf.addPattern("data", Rdf.TYPE, Cet.DATASET); //$NON-NLS-1$
19-Dec-2014 19:43:15     [javac]                                            ^
19-Dec-2014 19:43:15     [javac] Note: Some input files use unchecked or unsafe operations.
19-Dec-2014 19:43:15     [javac] Note: Recompile with -Xlint:unchecked for details.
19-Dec-2014 19:43:15     [javac] 77 warnings
19-Dec-2014 19:43:15
19-Dec-2014 19:43:15 gwtc:
19-Dec-2014 19:43:16      [java] Compiling module edu.illinois.ncsa.mmdb.web.MMDB
19-Dec-2014 19:43:52      [java]    Compiling 6 permutations
19-Dec-2014 19:43:52      [java]       Compiling permutation 0...
19-Dec-2014 19:44:03      [java]       Compiling permutation 1...
19-Dec-2014 19:44:13      [java]       Compiling permutation 2...
19-Dec-2014 19:44:22      [java]       Compiling permutation 3...
19-Dec-2014 19:44:29      [java]       Compiling permutation 4...
19-Dec-2014 19:44:37      [java]       Compiling permutation 5...
19-Dec-2014 19:44:45      [java]    Compile of permutations succeeded
19-Dec-2014 19:44:46      [java] Linking into /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/mmdb
19-Dec-2014 19:44:46      [java]    Link succeeded
19-Dec-2014 19:44:46      [java]    Compilation succeeded -- 89.887s
19-Dec-2014 19:44:47      [java] Compiling module edu.illinois.ncsa.mmdb.web.Embed
19-Dec-2014 19:45:11      [java]    Compiling 6 permutations
19-Dec-2014 19:45:11      [java]       Compiling permutation 0...
19-Dec-2014 19:45:17      [java]       Compiling permutation 1...
19-Dec-2014 19:45:21      [java]       Compiling permutation 2...
19-Dec-2014 19:45:26      [java]       Compiling permutation 3...
19-Dec-2014 19:45:30      [java]       Compiling permutation 4...
19-Dec-2014 19:45:34      [java]       Compiling permutation 5...
19-Dec-2014 19:45:39      [java]    Compile of permutations succeeded
19-Dec-2014 19:45:39      [java] Linking into /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/embed
19-Dec-2014 19:45:39      [java]    Link succeeded
19-Dec-2014 19:45:39      [java]    Compilation succeeded -- 52.016s
19-Dec-2014 19:45:39
19-Dec-2014 19:45:39 resources:
19-Dec-2014 19:45:39      [copy] Copying 7 files to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/WEB-INF/classes
19-Dec-2014 19:45:39      [copy] Copying 1 file to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/WEB-INF/classes
19-Dec-2014 19:45:39
19-Dec-2014 19:45:39 war:
19-Dec-2014 19:45:40       [zip] Building zip: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/medici.war
19-Dec-2014 19:45:43
19-Dec-2014 19:45:43 bamboo:
19-Dec-2014 19:45:43
19-Dec-2014 19:45:43 BUILD SUCCESSFUL
19-Dec-2014 19:45:43 Total time: 2 minutes 38 seconds
19-Dec-2014 19:45:44 Finished task 'Web App' with result: Success
19-Dec-2014 19:45:44 Starting task 'Geo Browse' of type 'com.atlassian.bamboo.plugins.ant:task.builder.ant'
19-Dec-2014 19:45:44
Beginning to execute external process for build 'MMDB - Medici 1 GWT - default #94 (MMDB-MEDICI-JOB1-94)'
... running command line:
/home/bamboo/apache-ant-1.9.4/bin/ant -Djava.io.tmpdir=/tmp/MMDB-MEDICI-JOB1 clean war
... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/geobrowse
... using extra environment variables:
bamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build
bamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_05
bamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41
bamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm
bamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60
JAVA_HOME=/home/bamboo/jdk1.7.0_60
bamboo_repository_18841602_previous_revision_number=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e
bamboo_planRepository_type=git
bamboo_shortPlanName=Medici 1 GWT
bamboo_capability_system_software_mongo=/usr/bin/mongo
bamboo_planKey=MMDB-MEDICI
bamboo_repository_git_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git
bamboo_planRepository_1_branchName=master
bamboo_repository_18841602_git_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/cbi/cet.git
bamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster
bamboo_repository_34635787_previous_revision_number=2812f29b30ce2a1b5bdf5288b994732fc8f587b3
bamboo_shortPlanKey=MEDICI
bamboo_shortJobKey=JOB1
bamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1
bamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt
bamboo_planRepository_1_branch=master
bamboo_repository_revision_number=be4a91e17aec92deb8437557b40e29ab99a26c72
bamboo_repository_18841602_name=cet
bamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.2.1
bamboo_planRepository_2_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/cbi/cet.git
bamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs
bamboo_planName=MMDB - Medici 1 GWT
bamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/MMDB-MEDICI-JOB1-94
bamboo_capability_system_jdk_JDK_1_7_0_60=/home/bamboo/jdk1.7.0_60
bamboo_buildResultKey=MMDB-MEDICI-JOB1-94
bamboo_planRepository_revision=be4a91e17aec92deb8437557b40e29ab99a26c72
bamboo_repository_git_username=
bamboo_buildKey=MMDB-MEDICI-JOB1
bamboo_repository_previous_revision_number=2812f29b30ce2a1b5bdf5288b994732fc8f587b3
bamboo_capability_system_git_executable=/usr/bin/git
bamboo_repository_34635787_git_branch=master
bamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1
bamboo_repository_18841602_revision_number=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e
bamboo_repository_18841602_git_username=
bamboo_planRepository_2_previousRevision=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e
bamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir
bamboo_buildPlanName=MMDB - Medici 1 GWT - default
bamboo_repository_name=cet
bamboo_planRepository_2_revision=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e
bamboo_repository_18841602_git_branch=master
bamboo_repository_34635787_git_username=
bamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/MMDB-MEDICI-JOB1-94
bamboo_repository_34635787_revision_number=be4a91e17aec92deb8437557b40e29ab99a26c72
bamboo_system_getTestsToPass=
bamboo_planRepository_1_revision=be4a91e17aec92deb8437557b40e29ab99a26c72
bamboo_repository_git_branch=master
bamboo_planRepository_2_branch=master
bamboo_planRepository_1_previousRevision=2812f29b30ce2a1b5bdf5288b994732fc8f587b3
bamboo_planRepository_1_type=git
bamboo_repository_18841602_branch_name=master
bamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt
bamboo_planRepository_1_name=medici-gwt-web
bamboo_build_commandline_com_atlassian_bamboo_plugins_ant_task_builder_ant_2=/home/bamboo/apache-ant-1.9.4/bin/ant -Djava.io.tmpdir=/tmp/MMDB-MEDICI-JOB1 bamboo -Dbamboo.version="master#94"
bamboo_planRepository_branch=master
bamboo_planRepository_2_branchName=master
bamboo_repository_34635787_name=medici-gwt-web
bamboo_planRepository_username=
bamboo_planRepository_branchName=master
bamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.7.0_60
bamboo_capability_system_os=linux
bamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1
bamboo_repository_34635787_branch_name=master
bamboo_shortJobName=default
bamboo_repository_branch_name=master
bamboo_agentId=57573377
bamboo_planRepository_previousRevision=2812f29b30ce2a1b5bdf5288b994732fc8f587b3
bamboo_planRepository_1_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git
bamboo_planRepository_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git
bamboo_planRepository_2_type=git
bamboo_repository_34635787_git_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git
ANT_HOME=/home/bamboo/apache-ant-1.9.4
bamboo_planRepository_2_name=cet
bamboo_planRepository_1_username=
bamboo_planRepository_2_username=
bamboo_planRepository_name=medici-gwt-web
bamboo_buildNumber=94
bamboo_capability_system_hostname=buildserver-2
bamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs
bamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4
bamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl
bamboo_buildTimeStamp=2014-12-19T19:42:21.593-06:00
PATH=/home/bamboo/jdk1.7.0_60/bin:/home/bamboo/jdk1.7.0_60/bin:/home/bamboo/node-v0.10.28/bin:/usr/bin:/bin
19-Dec-2014 19:45:44 Buildfile: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/geobrowse/build.xml
19-Dec-2014 19:45:45
19-Dec-2014 19:45:45 clean:
19-Dec-2014 19:45:45
19-Dec-2014 19:45:45 clean:
19-Dec-2014 19:45:45
19-Dec-2014 19:45:45 resources:
19-Dec-2014 19:45:45     [mkdir] Created dir: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/geobrowse/war/WEB-INF/classes
19-Dec-2014 19:45:45      [copy] Copying 3 files to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/geobrowse/war/WEB-INF/classes
19-Dec-2014 19:45:45
19-Dec-2014 19:45:45 compile:
19-Dec-2014 19:45:45     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/geobrowse/build.xml:68: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds
19-Dec-2014 19:45:45     [javac] Compiling 24 source files to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/geobrowse/war/WEB-INF/classes
19-Dec-2014 19:45:45     [javac] warning: [options] bootstrap class path not set in conjunction with -source 1.6
19-Dec-2014 19:45:47     [javac] 1 warning
19-Dec-2014 19:45:47
19-Dec-2014 19:45:47 gwtc:
19-Dec-2014 19:45:48      [java] Compiling module edu.illinois.ncsa.medici.geowebapp.Geo_webapp
19-Dec-2014 19:46:05      [java]    Compiling 6 permutations
19-Dec-2014 19:46:05      [java]       Compiling permutation 0...
19-Dec-2014 19:46:09      [java]       Compiling permutation 1...
19-Dec-2014 19:46:12      [java]       Compiling permutation 2...
19-Dec-2014 19:46:14      [java]       Compiling permutation 3...
19-Dec-2014 19:46:17      [java]       Compiling permutation 4...
19-Dec-2014 19:46:19      [java]       Compiling permutation 5...
19-Dec-2014 19:46:22      [java]    Compile of permutations succeeded
19-Dec-2014 19:46:22      [java] Linking into /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/geobrowse/war/geobrowse
19-Dec-2014 19:46:22      [java]    Link succeeded
19-Dec-2014 19:46:22      [java]    Compilation succeeded -- 34.250s
19-Dec-2014 19:46:22
19-Dec-2014 19:46:22 war:
19-Dec-2014 19:46:22       [zip] Building zip: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/geobrowse/geobrowse.war
19-Dec-2014 19:46:24
19-Dec-2014 19:46:24 BUILD SUCCESSFUL
19-Dec-2014 19:46:24 Total time: 39 seconds
19-Dec-2014 19:46:24 Finished task 'Geo Browse' with result: Success
19-Dec-2014 19:46:24 Starting task 'Dashboard' of type 'com.atlassian.bamboo.plugins.ant:task.builder.ant'
19-Dec-2014 19:46:24
Beginning to execute external process for build 'MMDB - Medici 1 GWT - default #94 (MMDB-MEDICI-JOB1-94)'
... running command line:
/home/bamboo/apache-ant-1.9.4/bin/ant -Djava.io.tmpdir=/tmp/MMDB-MEDICI-JOB1 clean war
... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/dashboard
... using extra environment variables:
bamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build
bamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_05
bamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41
bamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm
bamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60
JAVA_HOME=/home/bamboo/jdk1.7.0_60
bamboo_repository_18841602_previous_revision_number=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e
bamboo_planRepository_type=git
bamboo_shortPlanName=Medici 1 GWT
bamboo_capability_system_software_mongo=/usr/bin/mongo
bamboo_planKey=MMDB-MEDICI
bamboo_repository_git_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git
bamboo_planRepository_1_branchName=master
bamboo_repository_18841602_git_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/cbi/cet.git
bamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster
bamboo_repository_34635787_previous_revision_number=2812f29b30ce2a1b5bdf5288b994732fc8f587b3
bamboo_shortPlanKey=MEDICI
bamboo_shortJobKey=JOB1
bamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1
bamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt
bamboo_planRepository_1_branch=master
bamboo_repository_revision_number=be4a91e17aec92deb8437557b40e29ab99a26c72
bamboo_repository_18841602_name=cet
bamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.2.1
bamboo_planRepository_2_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/cbi/cet.git
bamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs
bamboo_planName=MMDB - Medici 1 GWT
bamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/MMDB-MEDICI-JOB1-94
bamboo_capability_system_jdk_JDK_1_7_0_60=/home/bamboo/jdk1.7.0_60
bamboo_buildResultKey=MMDB-MEDICI-JOB1-94
bamboo_planRepository_revision=be4a91e17aec92deb8437557b40e29ab99a26c72
bamboo_repository_git_username=
bamboo_buildKey=MMDB-MEDICI-JOB1
bamboo_repository_previous_revision_number=2812f29b30ce2a1b5bdf5288b994732fc8f587b3
bamboo_capability_system_git_executable=/usr/bin/git
bamboo_repository_34635787_git_branch=master
bamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1
bamboo_repository_18841602_revision_number=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e
bamboo_repository_18841602_git_username=
bamboo_planRepository_2_previousRevision=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e
bamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir
bamboo_buildPlanName=MMDB - Medici 1 GWT - default
bamboo_repository_name=cet
bamboo_planRepository_2_revision=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e
bamboo_repository_18841602_git_branch=master
bamboo_repository_34635787_git_username=
bamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/MMDB-MEDICI-JOB1-94
bamboo_repository_34635787_revision_number=be4a91e17aec92deb8437557b40e29ab99a26c72
bamboo_system_getTestsToPass=
bamboo_planRepository_1_revision=be4a91e17aec92deb8437557b40e29ab99a26c72
bamboo_repository_git_branch=master
bamboo_planRepository_2_branch=master
bamboo_planRepository_1_previousRevision=2812f29b30ce2a1b5bdf5288b994732fc8f587b3
bamboo_planRepository_1_type=git
bamboo_repository_18841602_branch_name=master
bamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt
bamboo_planRepository_1_name=medici-gwt-web
bamboo_build_commandline_com_atlassian_bamboo_plugins_ant_task_builder_ant_2=/home/bamboo/apache-ant-1.9.4/bin/ant -Djava.io.tmpdir=/tmp/MMDB-MEDICI-JOB1 bamboo -Dbamboo.version="master#94"
bamboo_planRepository_branch=master
bamboo_planRepository_2_branchName=master
bamboo_repository_34635787_name=medici-gwt-web
bamboo_planRepository_username=
bamboo_planRepository_branchName=master
bamboo_build_commandline_com_atlassian_bamboo_plugins_ant_task_builder_ant_4=/home/bamboo/apache-ant-1.9.4/bin/ant -Djava.io.tmpdir=/tmp/MMDB-MEDICI-JOB1 clean war
bamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.7.0_60
bamboo_capability_system_os=linux
bamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1
bamboo_repository_34635787_branch_name=master
bamboo_shortJobName=default
bamboo_repository_branch_name=master
bamboo_agentId=57573377
bamboo_planRepository_previousRevision=2812f29b30ce2a1b5bdf5288b994732fc8f587b3
bamboo_planRepository_1_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git
bamboo_planRepository_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git
bamboo_planRepository_2_type=git
bamboo_repository_34635787_git_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git
ANT_HOME=/home/bamboo/apache-ant-1.9.4
bamboo_planRepository_2_name=cet
bamboo_planRepository_1_username=
bamboo_planRepository_2_username=
bamboo_planRepository_name=medici-gwt-web
bamboo_buildNumber=94
bamboo_capability_system_hostname=buildserver-2
bamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs
bamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4
bamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl
bamboo_buildTimeStamp=2014-12-19T19:42:21.593-06:00
PATH=/home/bamboo/jdk1.7.0_60/bin:/home/bamboo/jdk1.7.0_60/bin:/home/bamboo/node-v0.10.28/bin:/usr/bin:/bin
19-Dec-2014 19:46:24 Buildfile: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/dashboard/build.xml
19-Dec-2014 19:46:25
19-Dec-2014 19:46:25 clean:
19-Dec-2014 19:46:25
19-Dec-2014 19:46:25 clean:
19-Dec-2014 19:46:25
19-Dec-2014 19:46:25 resources:
19-Dec-2014 19:46:25     [mkdir] Created dir: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/dashboard/WebContent/WEB-INF/classes
19-Dec-2014 19:46:25      [copy] Copying 3 files to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/dashboard/WebContent/WEB-INF/classes
19-Dec-2014 19:46:25
19-Dec-2014 19:46:25 compile:
19-Dec-2014 19:46:25     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/dashboard/build.xml:77: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds
19-Dec-2014 19:46:25     [javac] Compiling 3 source files to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/dashboard/WebContent/WEB-INF/classes
19-Dec-2014 19:46:26     [javac] warning: [options] bootstrap class path not set in conjunction with -source 1.5
19-Dec-2014 19:46:26     [javac] 1 warning
19-Dec-2014 19:46:26
19-Dec-2014 19:46:26 war:
19-Dec-2014 19:46:26       [zip] Building zip: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/dashboard/dashboard.war
19-Dec-2014 19:46:27
19-Dec-2014 19:46:27 BUILD SUCCESSFUL
19-Dec-2014 19:46:27 Total time: 2 seconds
19-Dec-2014 19:46:27 Finished task 'Dashboard' with result: Success
19-Dec-2014 19:46:27 Starting task 'Discovery' of type 'com.atlassian.bamboo.plugins.ant:task.builder.ant'
19-Dec-2014 19:46:27
Beginning to execute external process for build 'MMDB - Medici 1 GWT - default #94 (MMDB-MEDICI-JOB1-94)'
... running command line:
/home/bamboo/apache-ant-1.9.4/bin/ant -Djava.io.tmpdir=/tmp/MMDB-MEDICI-JOB1 clean war
... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/discovery
... using extra environment variables:
bamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build
bamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_05
bamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41
bamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm
bamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60
JAVA_HOME=/home/bamboo/jdk1.7.0_60
bamboo_repository_18841602_previous_revision_number=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e
bamboo_planRepository_type=git
bamboo_shortPlanName=Medici 1 GWT
bamboo_capability_system_software_mongo=/usr/bin/mongo
bamboo_planKey=MMDB-MEDICI
bamboo_repository_git_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git
bamboo_planRepository_1_branchName=master
bamboo_repository_18841602_git_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/cbi/cet.git
bamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster
bamboo_repository_34635787_previous_revision_number=2812f29b30ce2a1b5bdf5288b994732fc8f587b3
bamboo_shortPlanKey=MEDICI
bamboo_shortJobKey=JOB1
bamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1
bamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt
bamboo_planRepository_1_branch=master
bamboo_repository_revision_number=be4a91e17aec92deb8437557b40e29ab99a26c72
bamboo_repository_18841602_name=cet
bamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.2.1
bamboo_planRepository_2_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/cbi/cet.git
bamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs
bamboo_planName=MMDB - Medici 1 GWT
bamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/MMDB-MEDICI-JOB1-94
bamboo_capability_system_jdk_JDK_1_7_0_60=/home/bamboo/jdk1.7.0_60
bamboo_buildResultKey=MMDB-MEDICI-JOB1-94
bamboo_planRepository_revision=be4a91e17aec92deb8437557b40e29ab99a26c72
bamboo_repository_git_username=
bamboo_buildKey=MMDB-MEDICI-JOB1
bamboo_repository_previous_revision_number=2812f29b30ce2a1b5bdf5288b994732fc8f587b3
bamboo_capability_system_git_executable=/usr/bin/git
bamboo_repository_34635787_git_branch=master
bamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1
bamboo_repository_18841602_revision_number=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e
bamboo_repository_18841602_git_username=
bamboo_planRepository_2_previousRevision=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e
bamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir
bamboo_buildPlanName=MMDB - Medici 1 GWT - default
bamboo_repository_name=cet
bamboo_planRepository_2_revision=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e
bamboo_repository_18841602_git_branch=master
bamboo_repository_34635787_git_username=
bamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/MMDB-MEDICI-JOB1-94
bamboo_repository_34635787_revision_number=be4a91e17aec92deb8437557b40e29ab99a26c72
bamboo_system_getTestsToPass=
bamboo_planRepository_1_revision=be4a91e17aec92deb8437557b40e29ab99a26c72
bamboo_repository_git_branch=master
bamboo_planRepository_2_branch=master
bamboo_planRepository_1_previousRevision=2812f29b30ce2a1b5bdf5288b994732fc8f587b3
bamboo_planRepository_1_type=git
bamboo_repository_18841602_branch_name=master
bamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt
bamboo_planRepository_1_name=medici-gwt-web
bamboo_build_commandline_com_atlassian_bamboo_plugins_ant_task_builder_ant_2=/home/bamboo/apache-ant-1.9.4/bin/ant -Djava.io.tmpdir=/tmp/MMDB-MEDICI-JOB1 bamboo -Dbamboo.version="master#94"
bamboo_planRepository_branch=master
bamboo_planRepository_2_branchName=master
bamboo_repository_34635787_name=medici-gwt-web
bamboo_planRepository_username=
bamboo_build_commandline_com_atlassian_bamboo_plugins_ant_task_builder_ant_5=/home/bamboo/apache-ant-1.9.4/bin/ant -Djava.io.tmpdir=/tmp/MMDB-MEDICI-JOB1 clean war
bamboo_planRepository_branchName=master
bamboo_build_commandline_com_atlassian_bamboo_plugins_ant_task_builder_ant_4=/home/bamboo/apache-ant-1.9.4/bin/ant -Djava.io.tmpdir=/tmp/MMDB-MEDICI-JOB1 clean war
bamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.7.0_60
bamboo_capability_system_os=linux
bamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1
bamboo_repository_34635787_branch_name=master
bamboo_shortJobName=default
bamboo_repository_branch_name=master
bamboo_agentId=57573377
bamboo_planRepository_previousRevision=2812f29b30ce2a1b5bdf5288b994732fc8f587b3
bamboo_planRepository_1_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git
bamboo_planRepository_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git
bamboo_planRepository_2_type=git
bamboo_repository_34635787_git_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git
ANT_HOME=/home/bamboo/apache-ant-1.9.4
bamboo_planRepository_2_name=cet
bamboo_planRepository_1_username=
bamboo_planRepository_2_username=
bamboo_planRepository_name=medici-gwt-web
bamboo_buildNumber=94
bamboo_capability_system_hostname=buildserver-2
bamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs
bamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4
bamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl
bamboo_buildTimeStamp=2014-12-19T19:42:21.593-06:00
PATH=/home/bamboo/jdk1.7.0_60/bin:/home/bamboo/jdk1.7.0_60/bin:/home/bamboo/node-v0.10.28/bin:/usr/bin:/bin
19-Dec-2014 19:46:27 Buildfile: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/discovery/build.xml
19-Dec-2014 19:46:28
19-Dec-2014 19:46:28 clean:
19-Dec-2014 19:46:28
19-Dec-2014 19:46:28 clean:
19-Dec-2014 19:46:28
19-Dec-2014 19:46:28 resources:
19-Dec-2014 19:46:28     [mkdir] Created dir: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/discovery/WebContent/WEB-INF/classes
19-Dec-2014 19:46:28      [copy] Copying 3 files to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/discovery/WebContent/WEB-INF/classes
19-Dec-2014 19:46:28
19-Dec-2014 19:46:28 compile:
19-Dec-2014 19:46:28     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/discovery/build.xml:65: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds
19-Dec-2014 19:46:28     [javac] Compiling 8 source files to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/discovery/WebContent/WEB-INF/classes
19-Dec-2014 19:46:29     [javac] warning: [options] bootstrap class path not set in conjunction with -source 1.5
19-Dec-2014 19:46:29     [javac] 1 warning
19-Dec-2014 19:46:29     [javac] Creating empty /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/discovery/WebContent/WEB-INF/classes/org/sead/acr/discovery/package-info.class
19-Dec-2014 19:46:29
19-Dec-2014 19:46:29 war:
19-Dec-2014 19:46:30       [zip] Building zip: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/discovery/discovery.war
19-Dec-2014 19:46:30
19-Dec-2014 19:46:30 BUILD SUCCESSFUL
19-Dec-2014 19:46:30 Total time: 2 seconds
19-Dec-2014 19:46:30 Finished task 'Discovery' with result: Success
19-Dec-2014 19:46:30 Running post build plugin 'Artifact Copier'
19-Dec-2014 19:46:30 Publishing an artifact: medici.war
19-Dec-2014 19:46:30 Finished publishing of artifact Job artifact: [medici.war], pattern: [medici.war] anchored at: [mmdb-gwt/edu.illinois.ncsa.mmdb.web] in 0s
19-Dec-2014 19:46:30 Publishing an artifact: geobrowse.war
19-Dec-2014 19:46:31 Finished publishing of artifact Job artifact: [geobrowse.war], pattern: [geobrowse.war] anchored at: [mmdb-gwt/geobrowse] in 0s
19-Dec-2014 19:46:31 Publishing an artifact: dashboard.war
19-Dec-2014 19:46:31 Finished publishing of artifact Job artifact: [dashboard.war], pattern: [dashboard.war] anchored at: [mmdb-gwt/dashboard] in 0s
19-Dec-2014 19:46:31 Publishing an artifact: discovery.war
19-Dec-2014 19:46:31 Finished publishing of artifact Job artifact: [discovery.war], pattern: [discovery.war] anchored at: [mmdb-gwt/discovery] in 0s
19-Dec-2014 19:46:31 Running post build plugin 'NCover Results Collector'
19-Dec-2014 19:46:31 Running post build plugin 'Clover Results Collector'
19-Dec-2014 19:46:31 Finalising the build...
19-Dec-2014 19:46:31 Stopping timer.
19-Dec-2014 19:46:31 Build MMDB-MEDICI-JOB1-94 completed.
19-Dec-2014 19:46:31 Running on server: post build plugin 'NCover Results Collector'
19-Dec-2014 19:46:31 Running on server: post build plugin 'Clover Delta Calculator'
19-Dec-2014 19:46:31 Running on server: post build plugin 'CheckStyle Delta Calculator'
19-Dec-2014 19:46:31 Running on server: post build plugin 'Build Hanging Detection Configuration'
19-Dec-2014 19:46:31 Running on server: post build plugin 'Maven Dependencies Postprocessor'
19-Dec-2014 19:46:31 All post build plugins have finished
19-Dec-2014 19:46:31 Generating build results summary...
19-Dec-2014 19:46:31 Saving build results to disk...
19-Dec-2014 19:46:31 Indexing build results...
19-Dec-2014 19:46:31 Finished building MMDB-MEDICI-JOB1-94.