Build: #142 was successful

Job: default was successful

Stages & jobs

  1. Default Stage

Build log

The build generated 376 lines of output. Download or view full build log.

04-Apr-2017 13:54:17 Build MMDB - Medici 1 GWT - 1.5.2-fixes - default #142 (MMDB-MEDICI78-JOB1-142) started building on agent buildserver-1.os.ncsa.edu
04-Apr-2017 13:54:17 Remote agent on host buildserver-1.os.ncsa.edu
04-Apr-2017 13:54:17 Build working directory is /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1
04-Apr-2017 13:54:17 Executing build MMDB - Medici 1 GWT - 1.5.2-fixes - default #142 (MMDB-MEDICI78-JOB1-142)
04-Apr-2017 13:54:17 Starting task 'Source Code Checkout' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout'
04-Apr-2017 13:54:17 Build always requires a clean checkout
04-Apr-2017 13:54:17 Cleaning build directory '/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt'
04-Apr-2017 13:54:17 Build always requires a clean checkout
04-Apr-2017 13:54:17 Cleaning build directory '/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet'
04-Apr-2017 13:54:17 Updating source code to revision: 3457be147591c18cb7ce6250a84fe16a2c832dd0
04-Apr-2017 13:54:17 Creating local git repository in '/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/.git'.
04-Apr-2017 13:54:17 Initialized empty Git repository in /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/.git/
04-Apr-2017 13:54:18 Fetching 'refs/heads/1.5.2-fixes' from 'https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git'. Will try to do a shallow fetch.
04-Apr-2017 13:54:22 From https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web
04-Apr-2017 13:54:22 * [new branch]      1.5.2-fixes -> 1.5.2-fixes
04-Apr-2017 13:54:22 Checking out revision 3457be147591c18cb7ce6250a84fe16a2c832dd0.
04-Apr-2017 13:54:27 Switched to branch '1.5.2-fixes'
04-Apr-2017 13:54:27 Updated source code to revision: 3457be147591c18cb7ce6250a84fe16a2c832dd0
04-Apr-2017 13:54:27 Updating source code to revision: 0b0c4e05e8f4518f20b5ff7ffd272304deeab48e
04-Apr-2017 13:54:27 Creating local git repository in '/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/.git'.
04-Apr-2017 13:54:27 Initialized empty Git repository in /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/.git/
04-Apr-2017 13:54:28 Fetching 'refs/heads/master' from 'https://opensource.ncsa.illinois.edu/stash/scm/cbi/cet.git'. Will try to do a shallow fetch.
04-Apr-2017 13:54:37 From https://opensource.ncsa.illinois.edu/stash/scm/cbi/cet
04-Apr-2017 13:54:37 * [new branch]      master     -> master
04-Apr-2017 13:54:37 Checking out revision 0b0c4e05e8f4518f20b5ff7ffd272304deeab48e.
04-Apr-2017 13:54:53 Already on 'master'
04-Apr-2017 13:54:54 Updated source code to revision: 0b0c4e05e8f4518f20b5ff7ffd272304deeab48e
04-Apr-2017 13:54:54 Finished task 'Source Code Checkout' with result: Success
04-Apr-2017 13:54:54 Running pre-build action: VCS Version Collector
04-Apr-2017 13:54:54
Substituting variable: ${bamboo.repository.branch.name} with 1.5.2-fixes
04-Apr-2017 13:54:54
Substituting variable: ${bamboo.buildNumber} with 142
04-Apr-2017 13:54:58 Starting task 'Web App' of type 'com.atlassian.bamboo.plugins.ant:task.builder.ant'
04-Apr-2017 13:55:02
Beginning to execute external process for build 'MMDB - Medici 1 GWT - 1.5.2-fixes - default #142 (MMDB-MEDICI78-JOB1-142)'
... running command line:
/home/bamboo/apache-ant-1.9.4/bin/ant -Djava.io.tmpdir=/tmp/MMDB-MEDICI78-JOB1 bamboo -Dbamboo.version="1.5.2-fixes#142"
... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web
... using extra environment variables:
bamboo_planRepository_1_branch=1.5.2-fixes
bamboo_capability_system_builder_command_npm_6=/home/bamboo/node-v6.9.1/bin/npm
bamboo_planRepository_2_branch=master
bamboo_planRepository_1_branchDisplayName=1.5.2-fixes
bamboo_repository_revision_number=3457be147591c18cb7ce6250a84fe16a2c832dd0
bamboo_buildKey=MMDB-MEDICI78-JOB1
bamboo_repository_87130141_git_username=
bamboo_repository_87130141_git_branch=1.5.2-fixes
bamboo_planRepository_2_branchDisplayName=master
bamboo_shortJobName=default
bamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/MMDB-MEDICI78-JOB1-142
bamboo_repository_87130141_name=medici-gwt-web
bamboo_planRepository_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git
bamboo_agentId=140673027
bamboo_repository_18841602_branch_name=master
bamboo_repository_87130141_git_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git
bamboo_capability_system_builder_node_Node_js_v0_10_28=/home/bamboo/node-v0.10.28/bin/node
bamboo_planRepository_revision=3457be147591c18cb7ce6250a84fe16a2c832dd0
bamboo_planRepository_previousRevision=0fb265271412f32c1c02fd2400c1d3dd54af9af9
bamboo_repository_branch_name=1.5.2-fixes
bamboo_repository_18841602_name=cet
bamboo_capability_system_builder_command_python3=/usr/bin/python3
JAVA_HOME=/home/bamboo/jdk1.7.0_60
bamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt
ANT_HOME=/home/bamboo/apache-ant-1.9.4
bamboo_planRepository_branch=1.5.2-fixes
bamboo_repository_18841602_previous_revision_number=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e
bamboo_repository_87130141_revision_number=3457be147591c18cb7ce6250a84fe16a2c832dd0
bamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs
bamboo_planRepository_1_type=gitv2
bamboo_planRepository_branchName=1.5.2-fixes
bamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.8.0_66
bamboo_capability_system_software_mongo=/usr/bin/mongo
bamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl
bamboo_planRepository_type=gitv2
bamboo_planRepository_1_username=
bamboo_capability_system_jdk_JDK_1_8_0_66=/home/bamboo/jdk1.8.0_66
bamboo_planRepository_2_branchName=master
bamboo_repository_87130141_previous_revision_number=0fb265271412f32c1c02fd2400c1d3dd54af9af9
bamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node
bamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4
bamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.3.9
bamboo_planKey=MMDB-MEDICI78
bamboo_repository_18841602_git_branch=master
bamboo_planRepository_username=
bamboo_planRepository_1_branchName=1.5.2-fixes
bamboo_capability_system_builder_node_Node_js_v6_9_1=/home/bamboo/node-v6.9.1/bin/node
bamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster
bamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/MMDB-MEDICI78-JOB1-142
bamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build
bamboo_planRepository_1_name=medici-gwt-web
bamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1
bamboo_capability_system_os=linux
bamboo_shortPlanName=1.5.2-fixes
bamboo_planRepository_2_username=
bamboo_planRepository_name=medici-gwt-web
bamboo_repository_87130141_branch_name=1.5.2-fixes
bamboo_buildNumber=142
bamboo_repository_18841602_git_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/cbi/cet.git
bamboo_repository_18841602_git_username=
bamboo_planName=MMDB - Medici 1 GWT - 1.5.2-fixes
bamboo_shortPlanKey=MEDICI78
bamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt
bamboo_shortJobKey=JOB1
bamboo_planRepository_2_name=cet
bamboo_repository_previous_revision_number=0fb265271412f32c1c02fd2400c1d3dd54af9af9
bamboo_buildTimeStamp=2017-04-04T13:54:17.387-05:00
bamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm
bamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1
bamboo_buildResultKey=MMDB-MEDICI78-JOB1-142
bamboo_repository_git_branch=1.5.2-fixes
bamboo_buildPlanName=MMDB - Medici 1 GWT - 1.5.2-fixes - default
bamboo_planRepository_1_revision=3457be147591c18cb7ce6250a84fe16a2c832dd0
bamboo_repository_18841602_revision_number=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e
bamboo_repository_name=cet
bamboo_planRepository_2_previousRevision=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e
bamboo_capability_system_docker_executable=/usr/bin/docker
bamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir
bamboo_planRepository_2_revision=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e
bamboo_capability_system_git_executable=/usr/bin/git
bamboo_planRepository_1_previousRevision=0fb265271412f32c1c02fd2400c1d3dd54af9af9
bamboo_repository_git_username=
bamboo_capability_system_builder_sbt_SBT_0_13_13=/home/bamboo/sbt-0.13.13
bamboo_planRepository_branchDisplayName=1.5.2-fixes
bamboo_capability_system_builder_command_python2_7=/usr/bin/python2.7
bamboo_capability_system_hostname=buildserver-1
bamboo_planRepository_2_type=gitv2
bamboo_plan_storageTag=MMDB-MEDICI78
bamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs
bamboo_planRepository_2_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/cbi/cet.git
bamboo_repository_git_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git
bamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1
bamboo_planRepository_1_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git
bamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_66
bamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41
bamboo_capability_system_builder_command_mkcrx=/home/bamboo/mkcrx/mkcrx.sh
bamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60
PATH=/home/bamboo/jdk1.7.0_60/bin:/home/bamboo/jdk1.8.0_66/bin:/home/bamboo/node-v0.10.28/bin:/usr/bin:/bin
04-Apr-2017 13:55:04 Buildfile: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/build.xml
04-Apr-2017 13:55:18
04-Apr-2017 13:55:18 cetbean:
04-Apr-2017 13:55:19     [mkdir] Created dir: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/beanclass
04-Apr-2017 13:55:19     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/build.xml:85: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds
04-Apr-2017 13:55:19     [javac] Compiling 65 source files to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/beanclass
04-Apr-2017 13:55:19     [javac] warning: [options] bootstrap class path not set in conjunction with -source 1.5
04-Apr-2017 13:55:20     [javac] 1 warning
04-Apr-2017 13:55:20       [jar] Building jar: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/WEB-INF/lib/cet-bean.jar
04-Apr-2017 13:55:20    [delete] Deleting directory /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/beanclass
04-Apr-2017 13:55:20     [mkdir] Created dir: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/beanclass
04-Apr-2017 13:55:20     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/build.xml:100: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds
04-Apr-2017 13:55:20     [javac] Compiling 97 source files to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/beanclass
04-Apr-2017 13:55:20     [javac] warning: [options] bootstrap class path not set in conjunction with -source 1.5
04-Apr-2017 13:55:21     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/SHAPasswordDigest.java:48: warning: BASE64Encoder is internal proprietary API and may be removed in a future release
04-Apr-2017 13:55:21     [javac] import sun.misc.BASE64Encoder;
04-Apr-2017 13:55:21     [javac]                ^
04-Apr-2017 13:55:22     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/TagEventBeanUtil.java:72: warning: [deprecation] encode(String) in URLEncoder has been deprecated
04-Apr-2017 13:55:22     [javac]         return Resource.uriRef("tag:cet.ncsa.uiuc.edu,2008:/tag#" + URLEncoder.encode(tag)); //$NON-NLS-1$
04-Apr-2017 13:55:22     [javac]                                                                               ^
04-Apr-2017 13:55:22     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/VisualizationBeanUtil.java:73: warning: [deprecation] clone(T,PersonBean) in TupeloBeanUtil has been deprecated
04-Apr-2017 13:55:22     [javac]     public VisualizationBean clone(VisualizationBean bean, PersonBean creator)
04-Apr-2017 13:55:22     [javac]                              ^
04-Apr-2017 13:55:22     [javac]   where T is a type-variable:
04-Apr-2017 13:55:22     [javac]     T extends CETBean declared in class TupeloBeanUtil
04-Apr-2017 13:55:22     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/VisualizationBeanUtil.java:83: warning: [deprecation] clone(ConfigurationBean,PersonBean) in ConfigurationBeanUtil has been deprecated
04-Apr-2017 13:55:22     [javac]             ConfigurationBean configuration = cbu.clone(bean.getConfiguration(), creator);
04-Apr-2017 13:55:22     [javac]                                                  ^
04-Apr-2017 13:55:22     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/RBAC.java:442: warning: [deprecation] ADMIN_ROLE in MMDB has been deprecated
04-Apr-2017 13:55:22     [javac]             if (!t.getObject().equals(MMDB.ADMIN_ROLE) && !t.getObject().equals(MMDB.REGULAR_MEMBER_ROLE)) {
04-Apr-2017 13:55:22     [javac]                                           ^
04-Apr-2017 13:55:22     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/RBAC.java:442: warning: [deprecation] REGULAR_MEMBER_ROLE in MMDB has been deprecated
04-Apr-2017 13:55:22     [javac]             if (!t.getObject().equals(MMDB.ADMIN_ROLE) && !t.getObject().equals(MMDB.REGULAR_MEMBER_ROLE)) {
04-Apr-2017 13:55:22     [javac]                                                                                     ^
04-Apr-2017 13:55:22     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/RBAC.java:452: warning: [deprecation] ADMIN_ROLE in MMDB has been deprecated
04-Apr-2017 13:55:22     [javac]         createRole(MMDB.ADMIN_ROLE, "Administrator");
04-Apr-2017 13:55:22     [javac]                        ^
04-Apr-2017 13:55:22     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/RBAC.java:453: warning: [deprecation] REGULAR_MEMBER_ROLE in MMDB has been deprecated
04-Apr-2017 13:55:22     [javac]         createRole(MMDB.REGULAR_MEMBER_ROLE, "Member");
04-Apr-2017 13:55:22     [javac]                        ^
04-Apr-2017 13:55:22     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/SHAPasswordDigest.java:78: warning: BASE64Encoder is internal proprietary API and may be removed in a future release
04-Apr-2017 13:55:22     [javac]         BASE64Encoder encoder = new BASE64Encoder();
04-Apr-2017 13:55:22     [javac]         ^
04-Apr-2017 13:55:22     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/SHAPasswordDigest.java:78: warning: BASE64Encoder is internal proprietary API and may be removed in a future release
04-Apr-2017 13:55:22     [javac]         BASE64Encoder encoder = new BASE64Encoder();
04-Apr-2017 13:55:22     [javac]                                     ^
04-Apr-2017 13:55:22     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/workflow/dao/WorkflowStepDAO.java:28: warning: [deprecation] Rdf in Vocabulary has been deprecated
04-Apr-2017 13:55:22     [javac]         uf.addPattern(new Pattern("data", Vocabulary.Rdf.TYPE, Cyberintegrator.PARAMETER)); //$NON-NLS-1$
04-Apr-2017 13:55:22     [javac]                                                     ^
04-Apr-2017 13:55:22     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/workflow/dao/WorkflowStepDAO.java:40: warning: [deprecation] Rdf in Vocabulary has been deprecated
04-Apr-2017 13:55:22     [javac]         uf.addPattern(new Pattern("data", Vocabulary.Rdf.TYPE, Cyberintegrator.PARAMETER)); //$NON-NLS-1$
04-Apr-2017 13:55:22     [javac]                                                     ^
04-Apr-2017 13:55:22     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/workflow/dao/WorkflowStepDAO.java:58: warning: [deprecation] Rdf in Vocabulary has been deprecated
04-Apr-2017 13:55:22     [javac]         uf.addPattern(new Pattern("input", Vocabulary.Rdf.TYPE, Cyberintegrator.DATASET)); //$NON-NLS-1$
04-Apr-2017 13:55:22     [javac]                                                      ^
04-Apr-2017 13:55:22     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/workflow/dao/WorkflowStepDAO.java:82: warning: [deprecation] Rdf in Vocabulary has been deprecated
04-Apr-2017 13:55:22     [javac]         uf.addPattern(new Pattern("output", Vocabulary.Rdf.TYPE, Cyberintegrator.DATASET)); //$NON-NLS-1$
04-Apr-2017 13:55:22     [javac]                                                       ^
04-Apr-2017 13:55:22     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/workflow/dao/WorkflowToolDataDAO.java:26: warning: [deprecation] Rdf in Vocabulary has been deprecated
04-Apr-2017 13:55:22     [javac]         uf.addPattern(new Pattern("data", Vocabulary.Rdf.TYPE, Cyberintegrator.TOOL_DATA)); //$NON-NLS-1$
04-Apr-2017 13:55:22     [javac]                                                     ^
04-Apr-2017 13:55:22     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/workflow/dao/WorkflowToolDataDAO.java:41: warning: [deprecation] Rdf in Vocabulary has been deprecated
04-Apr-2017 13:55:22     [javac]         uf.addPattern(new Pattern("data", Vocabulary.Rdf.TYPE, Cyberintegrator.TOOL_DATA)); //$NON-NLS-1$
04-Apr-2017 13:55:22     [javac]                                                     ^
04-Apr-2017 13:55:22     [javac] 17 warnings
04-Apr-2017 13:55:22       [jar] Building jar: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/WEB-INF/lib/cet-bean-tupelo.jar
04-Apr-2017 13:55:22    [delete] Deleting directory /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/beanclass
04-Apr-2017 13:55:22
04-Apr-2017 13:55:22 updateversion:
04-Apr-2017 13:55:22
04-Apr-2017 13:55:22 clean:
04-Apr-2017 13:55:22
04-Apr-2017 13:55:22 compile:
04-Apr-2017 13:55:22     [mkdir] Created dir: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/WEB-INF/classes
04-Apr-2017 13:55:22     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/build.xml:126: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds
04-Apr-2017 13:55:23     [javac] Compiling 591 source files to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/WEB-INF/classes
04-Apr-2017 13:55:29     [javac] Note: Some input files use unchecked or unsafe operations.
04-Apr-2017 13:55:29     [javac] Note: Recompile with -Xlint:unchecked for details.
04-Apr-2017 13:55:29
04-Apr-2017 13:55:29 gwtc:
04-Apr-2017 13:55:29      [java] Apr 04, 2017 1:55:29 PM java.util.prefs.FileSystemPreferences$6 run
04-Apr-2017 13:55:29      [java] WARNING: Prefs file removed in background /home/bamboo/.java/.userPrefs/com/google/gwt/dev/shell/prefs.xml
04-Apr-2017 13:55:30      [java] Compiling module edu.illinois.ncsa.mmdb.web.MMDB
04-Apr-2017 13:55:41      [java]    Validating newly compiled units
04-Apr-2017 13:55:41      [java]       Ignored 1 unit with compilation errors in first pass.
04-Apr-2017 13:55:41      [java] Compile with -strict or with -logLevel set to TRACE or DEBUG to see all errors.
04-Apr-2017 13:55:59      [java] Exception in thread "Timer-0" java.lang.NoClassDefFoundError: org/w3c/dom/ElementTraversal
04-Apr-2017 13:55:59      [java]         at java.lang.ClassLoader.defineClass1(Native Method)
04-Apr-2017 13:55:59      [java]         at java.lang.ClassLoader.defineClass(ClassLoader.java:800)
04-Apr-2017 13:55:59      [java]         at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:142)
04-Apr-2017 13:55:59      [java]         at java.net.URLClassLoader.defineClass(URLClassLoader.java:449)
04-Apr-2017 13:55:59      [java]         at java.net.URLClassLoader.access$100(URLClassLoader.java:71)
04-Apr-2017 13:55:59      [java]         at java.net.URLClassLoader$1.run(URLClassLoader.java:361)
04-Apr-2017 13:55:59      [java]         at java.net.URLClassLoader$1.run(URLClassLoader.java:355)
04-Apr-2017 13:55:59      [java]         at java.security.AccessController.doPrivileged(Native Method)
04-Apr-2017 13:55:59      [java]         at java.net.URLClassLoader.findClass(URLClassLoader.java:354)
04-Apr-2017 13:55:59      [java]         at java.lang.ClassLoader.loadClass(ClassLoader.java:425)
04-Apr-2017 13:55:59      [java]         at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:308)
04-Apr-2017 13:55:59      [java]         at java.lang.ClassLoader.loadClass(ClassLoader.java:358)
04-Apr-2017 13:55:59      [java]         at org.apache.xerces.dom.DOMImplementationImpl.createDocument(Unknown Source)
04-Apr-2017 13:55:59      [java]         at org.apache.xerces.dom.CoreDOMImplementationImpl.createDocument(Unknown Source)
04-Apr-2017 13:55:59      [java]         at java.util.prefs.XmlSupport.createPrefsDoc(XmlSupport.java:228)
04-Apr-2017 13:55:59      [java]         at java.util.prefs.XmlSupport.exportMap(XmlSupport.java:343)
04-Apr-2017 13:55:59      [java]         at java.util.prefs.FileSystemPreferences$7.run(FileSystemPreferences.java:622)
04-Apr-2017 13:55:59      [java]         at java.util.prefs.FileSystemPreferences$7.run(FileSystemPreferences.java:615)
04-Apr-2017 13:55:59      [java]         at java.security.AccessController.doPrivileged(Native Method)
04-Apr-2017 13:55:59      [java]         at java.util.prefs.FileSystemPreferences.writeBackCache(FileSystemPreferences.java:614)
04-Apr-2017 13:55:59      [java]         at java.util.prefs.FileSystemPreferences.syncSpiPrivileged(FileSystemPreferences.java:801)
04-Apr-2017 13:55:59      [java]         at java.util.prefs.FileSystemPreferences.access$2300(FileSystemPreferences.java:50)
04-Apr-2017 13:55:59      [java]         at java.util.prefs.FileSystemPreferences$12.run(FileSystemPreferences.java:771)
04-Apr-2017 13:55:59      [java]         at java.util.prefs.FileSystemPreferences$12.run(FileSystemPreferences.java:769)
04-Apr-2017 13:55:59      [java]         at java.security.AccessController.doPrivileged(Native Method)
04-Apr-2017 13:55:59      [java]         at java.util.prefs.FileSystemPreferences.syncSpi(FileSystemPreferences.java:768)
04-Apr-2017 13:55:59      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1332)
04-Apr-2017 13:55:59      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
04-Apr-2017 13:55:59      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
04-Apr-2017 13:55:59      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
04-Apr-2017 13:55:59      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
04-Apr-2017 13:55:59      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
04-Apr-2017 13:55:59      [java]         at java.util.prefs.AbstractPreferences.sync(AbstractPreferences.java:1323)
04-Apr-2017 13:55:59      [java]         at java.util.prefs.FileSystemPreferences.sync(FileSystemPreferences.java:747)
04-Apr-2017 13:55:59      [java]         at java.util.prefs.FileSystemPreferences.flush(FileSystemPreferences.java:824)
04-Apr-2017 13:55:59      [java]         at java.util.prefs.FileSystemPreferences.syncWorld(FileSystemPreferences.java:464)
04-Apr-2017 13:55:59      [java]         at java.util.prefs.FileSystemPreferences.access$1200(FileSystemPreferences.java:50)
04-Apr-2017 13:55:59      [java]         at java.util.prefs.FileSystemPreferences$3.run(FileSystemPreferences.java:432)
04-Apr-2017 13:55:59      [java]         at java.util.TimerThread.mainLoop(Timer.java:555)
04-Apr-2017 13:55:59      [java]         at java.util.TimerThread.run(Timer.java:505)
04-Apr-2017 13:55:59      [java] Caused by: java.lang.ClassNotFoundException: org.w3c.dom.ElementTraversal
04-Apr-2017 13:55:59      [java]         at java.net.URLClassLoader$1.run(URLClassLoader.java:366)
04-Apr-2017 13:55:59      [java]         at java.net.URLClassLoader$1.run(URLClassLoader.java:355)
04-Apr-2017 13:55:59      [java]         at java.security.AccessController.doPrivileged(Native Method)
04-Apr-2017 13:55:59      [java]         at java.net.URLClassLoader.findClass(URLClassLoader.java:354)
04-Apr-2017 13:55:59      [java]         at java.lang.ClassLoader.loadClass(ClassLoader.java:425)
04-Apr-2017 13:55:59      [java]         at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:308)
04-Apr-2017 13:55:59      [java]         at java.lang.ClassLoader.loadClass(ClassLoader.java:358)
04-Apr-2017 13:55:59      [java]         ... 40 more
04-Apr-2017 13:56:01      [java]    Compiling 6 permutations
04-Apr-2017 13:56:01      [java]       Compiling permutation 0...
04-Apr-2017 13:56:08      [java]       Compiling permutation 1...
04-Apr-2017 13:56:13      [java]       Compiling permutation 2...
04-Apr-2017 13:56:19      [java]       Compiling permutation 3...
04-Apr-2017 13:56:23      [java]       Compiling permutation 4...
04-Apr-2017 13:56:28      [java]       Compiling permutation 5...
04-Apr-2017 13:56:32      [java]    Compile of permutations succeeded
04-Apr-2017 13:56:32      [java] Linking into /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/mmdb
04-Apr-2017 13:56:32      [java]    Link succeeded
04-Apr-2017 13:56:32      [java]    Compilation succeeded -- 62.840s
04-Apr-2017 13:56:32      [java] Exception in thread "Thread-1" java.lang.NoClassDefFoundError: org/w3c/dom/ElementTraversal
04-Apr-2017 13:56:32      [java]         at java.lang.ClassLoader.defineClass1(Native Method)
04-Apr-2017 13:56:32      [java]         at java.lang.ClassLoader.defineClass(ClassLoader.java:800)
04-Apr-2017 13:56:32      [java]         at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:142)
04-Apr-2017 13:56:32      [java]         at java.net.URLClassLoader.defineClass(URLClassLoader.java:449)
04-Apr-2017 13:56:32      [java]         at java.net.URLClassLoader.access$100(URLClassLoader.java:71)
04-Apr-2017 13:56:32      [java]         at java.net.URLClassLoader$1.run(URLClassLoader.java:361)
04-Apr-2017 13:56:32      [java]         at java.net.URLClassLoader$1.run(URLClassLoader.java:355)
04-Apr-2017 13:56:32      [java]         at java.security.AccessController.doPrivileged(Native Method)
04-Apr-2017 13:56:32      [java]         at java.net.URLClassLoader.findClass(URLClassLoader.java:354)
04-Apr-2017 13:56:32      [java]         at java.lang.ClassLoader.loadClass(ClassLoader.java:425)
04-Apr-2017 13:56:32      [java]         at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:308)
04-Apr-2017 13:56:32      [java]         at java.lang.ClassLoader.loadClass(ClassLoader.java:358)
04-Apr-2017 13:56:32      [java]         at org.apache.xerces.dom.DOMImplementationImpl.createDocument(Unknown Source)
04-Apr-2017 13:56:32      [java]         at org.apache.xerces.dom.CoreDOMImplementationImpl.createDocument(Unknown Source)
04-Apr-2017 13:56:32      [java]         at java.util.prefs.XmlSupport.createPrefsDoc(XmlSupport.java:228)
04-Apr-2017 13:56:32      [java]         at java.util.prefs.XmlSupport.exportMap(XmlSupport.java:343)
04-Apr-2017 13:56:32      [java]         at java.util.prefs.FileSystemPreferences$7.run(FileSystemPreferences.java:622)
04-Apr-2017 13:56:32      [java]         at java.util.prefs.FileSystemPreferences$7.run(FileSystemPreferences.java:615)
04-Apr-2017 13:56:32      [java]         at java.security.AccessController.doPrivileged(Native Method)
04-Apr-2017 13:56:32      [java]         at java.util.prefs.FileSystemPreferences.writeBackCache(FileSystemPreferences.java:614)
04-Apr-2017 13:56:32      [java]         at java.util.prefs.FileSystemPreferences.syncSpiPrivileged(FileSystemPreferences.java:801)
04-Apr-2017 13:56:32      [java]         at java.util.prefs.FileSystemPreferences.access$2300(FileSystemPreferences.java:50)
04-Apr-2017 13:56:32      [java]         at java.util.prefs.FileSystemPreferences$12.run(FileSystemPreferences.java:771)
04-Apr-2017 13:56:32      [java]         at java.util.prefs.FileSystemPreferences$12.run(FileSystemPreferences.java:769)
04-Apr-2017 13:56:32      [java]         at java.security.AccessController.doPrivileged(Native Method)
04-Apr-2017 13:56:32      [java]         at java.util.prefs.FileSystemPreferences.syncSpi(FileSystemPreferences.java:768)
04-Apr-2017 13:56:32      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1332)
04-Apr-2017 13:56:32      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
04-Apr-2017 13:56:32      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
04-Apr-2017 13:56:32      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
04-Apr-2017 13:56:32      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
04-Apr-2017 13:56:32      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
04-Apr-2017 13:56:32      [java]         at java.util.prefs.AbstractPreferences.sync(AbstractPreferences.java:1323)
04-Apr-2017 13:56:32      [java]         at java.util.prefs.FileSystemPreferences.sync(FileSystemPreferences.java:747)
04-Apr-2017 13:56:32      [java]         at java.util.prefs.FileSystemPreferences.flush(FileSystemPreferences.java:824)
04-Apr-2017 13:56:32      [java]         at java.util.prefs.FileSystemPreferences.syncWorld(FileSystemPreferences.java:464)
04-Apr-2017 13:56:32      [java]         at java.util.prefs.FileSystemPreferences.access$1200(FileSystemPreferences.java:50)
04-Apr-2017 13:56:32      [java]         at java.util.prefs.FileSystemPreferences$4$1.run(FileSystemPreferences.java:442)
04-Apr-2017 13:56:32      [java] Caused by: java.lang.ClassNotFoundException: org.w3c.dom.ElementTraversal
04-Apr-2017 13:56:32      [java]         at java.net.URLClassLoader$1.run(URLClassLoader.java:366)
04-Apr-2017 13:56:32      [java]         at java.net.URLClassLoader$1.run(URLClassLoader.java:355)
04-Apr-2017 13:56:32      [java]         at java.security.AccessController.doPrivileged(Native Method)
04-Apr-2017 13:56:32      [java]         at java.net.URLClassLoader.findClass(URLClassLoader.java:354)
04-Apr-2017 13:56:32      [java]         at java.lang.ClassLoader.loadClass(ClassLoader.java:425)
04-Apr-2017 13:56:32      [java]         at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:308)
04-Apr-2017 13:56:32      [java]         at java.lang.ClassLoader.loadClass(ClassLoader.java:358)
04-Apr-2017 13:56:32      [java]         ... 38 more
04-Apr-2017 13:56:33      [java] Apr 04, 2017 1:56:33 PM java.util.prefs.FileSystemPreferences$6 run
04-Apr-2017 13:56:33      [java] WARNING: Prefs file removed in background /home/bamboo/.java/.userPrefs/com/google/gwt/dev/shell/prefs.xml
04-Apr-2017 13:56:33      [java] Compiling module edu.illinois.ncsa.mmdb.web.Embed
04-Apr-2017 13:56:35      [java]    Validating newly compiled units
04-Apr-2017 13:56:35      [java]       Ignored 1 unit with compilation errors in first pass.
04-Apr-2017 13:56:35      [java] Compile with -strict or with -logLevel set to TRACE or DEBUG to see all errors.
04-Apr-2017 13:56:52      [java]    Compiling 6 permutations
04-Apr-2017 13:56:52      [java]       Compiling permutation 0...
04-Apr-2017 13:56:56      [java]       Compiling permutation 1...
04-Apr-2017 13:56:59      [java]       Compiling permutation 2...
04-Apr-2017 13:57:01      [java]       Compiling permutation 3...
04-Apr-2017 13:57:03      [java] Exception in thread "Timer-0" java.lang.NoClassDefFoundError: org/w3c/dom/ElementTraversal
04-Apr-2017 13:57:03      [java]         at java.lang.ClassLoader.defineClass1(Native Method)
04-Apr-2017 13:57:03      [java]         at java.lang.ClassLoader.defineClass(ClassLoader.java:800)
04-Apr-2017 13:57:03      [java]         at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:142)
04-Apr-2017 13:57:03      [java]         at java.net.URLClassLoader.defineClass(URLClassLoader.java:449)
04-Apr-2017 13:57:03      [java]         at java.net.URLClassLoader.access$100(URLClassLoader.java:71)
04-Apr-2017 13:57:03      [java]         at java.net.URLClassLoader$1.run(URLClassLoader.java:361)
04-Apr-2017 13:57:03      [java]         at java.net.URLClassLoader$1.run(URLClassLoader.java:355)
04-Apr-2017 13:57:03      [java]         at java.security.AccessController.doPrivileged(Native Method)
04-Apr-2017 13:57:03      [java]         at java.net.URLClassLoader.findClass(URLClassLoader.java:354)
04-Apr-2017 13:57:03      [java]         at java.lang.ClassLoader.loadClass(ClassLoader.java:425)
04-Apr-2017 13:57:03      [java]         at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:308)
04-Apr-2017 13:57:03      [java]         at java.lang.ClassLoader.loadClass(ClassLoader.java:358)
04-Apr-2017 13:57:03      [java]         at org.apache.xerces.dom.DOMImplementationImpl.createDocument(Unknown Source)
04-Apr-2017 13:57:03      [java]         at org.apache.xerces.dom.CoreDOMImplementationImpl.createDocument(Unknown Source)
04-Apr-2017 13:57:03      [java]         at java.util.prefs.XmlSupport.createPrefsDoc(XmlSupport.java:228)
04-Apr-2017 13:57:03      [java]         at java.util.prefs.XmlSupport.exportMap(XmlSupport.java:343)
04-Apr-2017 13:57:03      [java]         at java.util.prefs.FileSystemPreferences$7.run(FileSystemPreferences.java:622)
04-Apr-2017 13:57:03      [java]         at java.util.prefs.FileSystemPreferences$7.run(FileSystemPreferences.java:615)
04-Apr-2017 13:57:03      [java]         at java.security.AccessController.doPrivileged(Native Method)
04-Apr-2017 13:57:03      [java]         at java.util.prefs.FileSystemPreferences.writeBackCache(FileSystemPreferences.java:614)
04-Apr-2017 13:57:03      [java]         at java.util.prefs.FileSystemPreferences.syncSpiPrivileged(FileSystemPreferences.java:801)
04-Apr-2017 13:57:03      [java]         at java.util.prefs.FileSystemPreferences.access$2300(FileSystemPreferences.java:50)
04-Apr-2017 13:57:03      [java]         at java.util.prefs.FileSystemPreferences$12.run(FileSystemPreferences.java:771)
04-Apr-2017 13:57:03      [java]         at java.util.prefs.FileSystemPreferences$12.run(FileSystemPreferences.java:769)
04-Apr-2017 13:57:03      [java]         at java.security.AccessController.doPrivileged(Native Method)
04-Apr-2017 13:57:03      [java]         at java.util.prefs.FileSystemPreferences.syncSpi(FileSystemPreferences.java:768)
04-Apr-2017 13:57:03      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1332)
04-Apr-2017 13:57:03      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
04-Apr-2017 13:57:03      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
04-Apr-2017 13:57:03      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
04-Apr-2017 13:57:03      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
04-Apr-2017 13:57:03      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
04-Apr-2017 13:57:03      [java]         at java.util.prefs.AbstractPreferences.sync(AbstractPreferences.java:1323)
04-Apr-2017 13:57:03      [java]         at java.util.prefs.FileSystemPreferences.sync(FileSystemPreferences.java:747)
04-Apr-2017 13:57:03      [java]         at java.util.prefs.FileSystemPreferences.flush(FileSystemPreferences.java:824)
04-Apr-2017 13:57:03      [java]         at java.util.prefs.FileSystemPreferences.syncWorld(FileSystemPreferences.java:464)
04-Apr-2017 13:57:03      [java]         at java.util.prefs.FileSystemPreferences.access$1200(FileSystemPreferences.java:50)
04-Apr-2017 13:57:03      [java]         at java.util.prefs.FileSystemPreferences$3.run(FileSystemPreferences.java:432)
04-Apr-2017 13:57:03      [java]         at java.util.TimerThread.mainLoop(Timer.java:555)
04-Apr-2017 13:57:03      [java]         at java.util.TimerThread.run(Timer.java:505)
04-Apr-2017 13:57:03      [java] Caused by: java.lang.ClassNotFoundException: org.w3c.dom.ElementTraversal
04-Apr-2017 13:57:03      [java]         at java.net.URLClassLoader$1.run(URLClassLoader.java:366)
04-Apr-2017 13:57:03      [java]         at java.net.URLClassLoader$1.run(URLClassLoader.java:355)
04-Apr-2017 13:57:03      [java]         at java.security.AccessController.doPrivileged(Native Method)
04-Apr-2017 13:57:03      [java]         at java.net.URLClassLoader.findClass(URLClassLoader.java:354)
04-Apr-2017 13:57:03      [java]         at java.lang.ClassLoader.loadClass(ClassLoader.java:425)
04-Apr-2017 13:57:03      [java]         at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:308)
04-Apr-2017 13:57:03      [java]         at java.lang.ClassLoader.loadClass(ClassLoader.java:358)
04-Apr-2017 13:57:03      [java]         ... 40 more
04-Apr-2017 13:57:04      [java]       Compiling permutation 4...
04-Apr-2017 13:57:06      [java]       Compiling permutation 5...
04-Apr-2017 13:57:08      [java]    Compile of permutations succeeded
04-Apr-2017 13:57:08      [java] Exception in thread "Thread-1" java.lang.NoClassDefFoundError: org/w3c/dom/ElementTraversal
04-Apr-2017 13:57:08      [java]         at java.lang.ClassLoader.defineClass1(Native Method)
04-Apr-2017 13:57:08      [java]         at java.lang.ClassLoader.defineClass(ClassLoader.java:800)
04-Apr-2017 13:57:08      [java] Linking into /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/embed
04-Apr-2017 13:57:08      [java]    Link succeeded
04-Apr-2017 13:57:08      [java]    Compilation succeeded -- 35.093s
04-Apr-2017 13:57:08      [java]         at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:142)
04-Apr-2017 13:57:08      [java]         at java.net.URLClassLoader.defineClass(URLClassLoader.java:449)
04-Apr-2017 13:57:08      [java]         at java.net.URLClassLoader.access$100(URLClassLoader.java:71)
04-Apr-2017 13:57:08      [java]         at java.net.URLClassLoader$1.run(URLClassLoader.java:361)
04-Apr-2017 13:57:08      [java]         at java.net.URLClassLoader$1.run(URLClassLoader.java:355)
04-Apr-2017 13:57:08      [java]         at java.security.AccessController.doPrivileged(Native Method)
04-Apr-2017 13:57:08      [java]         at java.net.URLClassLoader.findClass(URLClassLoader.java:354)
04-Apr-2017 13:57:08      [java]         at java.lang.ClassLoader.loadClass(ClassLoader.java:425)
04-Apr-2017 13:57:08      [java]         at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:308)
04-Apr-2017 13:57:08      [java]         at java.lang.ClassLoader.loadClass(ClassLoader.java:358)
04-Apr-2017 13:57:08      [java]         at org.apache.xerces.dom.DOMImplementationImpl.createDocument(Unknown Source)
04-Apr-2017 13:57:08      [java]         at org.apache.xerces.dom.CoreDOMImplementationImpl.createDocument(Unknown Source)
04-Apr-2017 13:57:08      [java]         at java.util.prefs.XmlSupport.createPrefsDoc(XmlSupport.java:228)
04-Apr-2017 13:57:08      [java]         at java.util.prefs.XmlSupport.exportMap(XmlSupport.java:343)
04-Apr-2017 13:57:08      [java]         at java.util.prefs.FileSystemPreferences$7.run(FileSystemPreferences.java:622)
04-Apr-2017 13:57:08      [java]         at java.util.prefs.FileSystemPreferences$7.run(FileSystemPreferences.java:615)
04-Apr-2017 13:57:08      [java]         at java.security.AccessController.doPrivileged(Native Method)
04-Apr-2017 13:57:08      [java]         at java.util.prefs.FileSystemPreferences.writeBackCache(FileSystemPreferences.java:614)
04-Apr-2017 13:57:08      [java]         at java.util.prefs.FileSystemPreferences.syncSpiPrivileged(FileSystemPreferences.java:801)
04-Apr-2017 13:57:08      [java]         at java.util.prefs.FileSystemPreferences.access$2300(FileSystemPreferences.java:50)
04-Apr-2017 13:57:08      [java]         at java.util.prefs.FileSystemPreferences$12.run(FileSystemPreferences.java:771)
04-Apr-2017 13:57:08      [java]         at java.util.prefs.FileSystemPreferences$12.run(FileSystemPreferences.java:769)
04-Apr-2017 13:57:08      [java]         at java.security.AccessController.doPrivileged(Native Method)
04-Apr-2017 13:57:08      [java]         at java.util.prefs.FileSystemPreferences.syncSpi(FileSystemPreferences.java:768)
04-Apr-2017 13:57:08      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1332)
04-Apr-2017 13:57:08      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
04-Apr-2017 13:57:08      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
04-Apr-2017 13:57:08      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
04-Apr-2017 13:57:08      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
04-Apr-2017 13:57:08      [java]         at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
04-Apr-2017 13:57:08      [java]         at java.util.prefs.AbstractPreferences.sync(AbstractPreferences.java:1323)
04-Apr-2017 13:57:08      [java]         at java.util.prefs.FileSystemPreferences.sync(FileSystemPreferences.java:747)
04-Apr-2017 13:57:08      [java]         at java.util.prefs.FileSystemPreferences.flush(FileSystemPreferences.java:824)
04-Apr-2017 13:57:08      [java]         at java.util.prefs.FileSystemPreferences.syncWorld(FileSystemPreferences.java:464)
04-Apr-2017 13:57:08      [java]         at java.util.prefs.FileSystemPreferences.access$1200(FileSystemPreferences.java:50)
04-Apr-2017 13:57:08      [java]         at java.util.prefs.FileSystemPreferences$4$1.run(FileSystemPreferences.java:442)
04-Apr-2017 13:57:08      [java] Caused by: java.lang.ClassNotFoundException: org.w3c.dom.ElementTraversal
04-Apr-2017 13:57:08      [java]         at java.net.URLClassLoader$1.run(URLClassLoader.java:366)
04-Apr-2017 13:57:08      [java]         at java.net.URLClassLoader$1.run(URLClassLoader.java:355)
04-Apr-2017 13:57:08      [java]         at java.security.AccessController.doPrivileged(Native Method)
04-Apr-2017 13:57:08      [java]         at java.net.URLClassLoader.findClass(URLClassLoader.java:354)
04-Apr-2017 13:57:08      [java]         at java.lang.ClassLoader.loadClass(ClassLoader.java:425)
04-Apr-2017 13:57:08      [java]         at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:308)
04-Apr-2017 13:57:08      [java]         at java.lang.ClassLoader.loadClass(ClassLoader.java:358)
04-Apr-2017 13:57:08      [java]         ... 38 more
04-Apr-2017 13:57:08
04-Apr-2017 13:57:08 resources:
04-Apr-2017 13:57:08      [copy] Copying 6 files to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/WEB-INF/classes
04-Apr-2017 13:57:08      [copy] Copying 1 file to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/WEB-INF/classes
04-Apr-2017 13:57:08
04-Apr-2017 13:57:08 war:
04-Apr-2017 13:57:08       [zip] Building zip: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/medici.war
04-Apr-2017 13:57:11
04-Apr-2017 13:57:11 bamboo:
04-Apr-2017 13:57:13
04-Apr-2017 13:57:13 BUILD SUCCESSFUL
04-Apr-2017 13:57:13 Total time: 2 minutes 7 seconds
04-Apr-2017 13:57:13 Finished task 'Web App' with result: Success
04-Apr-2017 13:57:13 Running post build plugin 'Docker Container Cleanup'
04-Apr-2017 13:57:13 Running post build plugin 'NCover Results Collector'
04-Apr-2017 13:57:13 Running post build plugin 'Clover Results Collector'
04-Apr-2017 13:57:13 Running post build plugin 'npm Cache Cleanup'
04-Apr-2017 13:57:13 Running post build plugin 'Artifact Copier'
04-Apr-2017 13:57:13 Publishing an artifact: medici.war
04-Apr-2017 13:57:16 Finished publishing of artifact Job artifact: [medici.war], pattern: [medici.war] anchored at: [mmdb-gwt/edu.illinois.ncsa.mmdb.web] in 2.870 s
04-Apr-2017 13:57:16 Finalising the build...
04-Apr-2017 13:57:16 Stopping timer.
04-Apr-2017 13:57:16 Build MMDB-MEDICI78-JOB1-142 completed.
04-Apr-2017 13:57:16 Running on server: post build plugin 'NCover Results Collector'
04-Apr-2017 13:57:16 Running on server: post build plugin 'Build Hanging Detection Configuration'
04-Apr-2017 13:57:16 Running on server: post build plugin 'Clover Delta Calculator'
04-Apr-2017 13:57:16 Running on server: post build plugin 'Maven Dependencies Postprocessor'
04-Apr-2017 13:57:16 All post build plugins have finished
04-Apr-2017 13:57:16 Generating build results summary...
04-Apr-2017 13:57:16 Saving build results to disk...
04-Apr-2017 13:57:16 Logging substituted variables...
04-Apr-2017 13:57:16 Indexing build results...
04-Apr-2017 13:57:16 Finished building MMDB-MEDICI78-JOB1-142.