Build: #11 failed
Job: Default Job failed
Build log
The build generated 31,018 lines of output. The output is too long and has been truncated to the last 1,000 lines. Download or view full build log.
| 05-Oct-2018 15:17:34 | checking how to run the C preprocessor... gcc -E |
| 05-Oct-2018 15:17:34 | checking how to run the C++ preprocessor... g++ -E |
| 05-Oct-2018 15:17:34 | checking for gcc option to accept ISO C99... none needed |
| 05-Oct-2018 15:17:34 | checking for gcc option to accept ISO Standard C... (cached) none needed |
| 05-Oct-2018 15:17:34 | checking for flex... flex |
| 05-Oct-2018 15:17:34 | checking lex output file root... lex.yy |
| 05-Oct-2018 15:17:35 | checking lex library... -lfl |
| 05-Oct-2018 15:17:35 | checking whether yytext is a pointer... yes |
| 05-Oct-2018 15:17:35 | checking for bison... bison -y |
| 05-Oct-2018 15:17:35 | checking whether ln -s works... yes |
| 05-Oct-2018 15:17:35 | checking how to print strings... printf |
| 05-Oct-2018 15:17:35 | checking for a sed that does not truncate output... /usr/bin/sed |
| 05-Oct-2018 15:17:35 | checking for fgrep... /usr/bin/grep -F |
| 05-Oct-2018 15:17:35 | checking for ld used by gcc... /usr/bin/ld |
| 05-Oct-2018 15:17:35 | checking if the linker (/usr/bin/ld) is GNU ld... yes |
| 05-Oct-2018 15:17:35 | checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B |
| 05-Oct-2018 15:17:35 | checking the name lister (/usr/bin/nm -B) interface... BSD nm |
| 05-Oct-2018 15:17:35 | checking the maximum length of command line arguments... 1572864 |
| 05-Oct-2018 15:17:35 | checking whether the shell understands some XSI constructs... yes |
| 05-Oct-2018 15:17:35 | checking whether the shell understands "+="... yes |
| 05-Oct-2018 15:17:36 | checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop |
| 05-Oct-2018 15:17:36 | checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop |
| 05-Oct-2018 15:17:36 | checking for /usr/bin/ld option to reload object files... -r |
| 05-Oct-2018 15:17:36 | checking for objdump... objdump |
| 05-Oct-2018 15:17:36 | checking how to recognize dependent libraries... pass_all |
| 05-Oct-2018 15:17:36 | checking for dlltool... no |
| 05-Oct-2018 15:17:36 | checking how to associate runtime and link libraries... printf %s\n |
| 05-Oct-2018 15:17:36 | checking for ar... ar |
| 05-Oct-2018 15:17:36 | checking for archiver @FILE support... @ |
| 05-Oct-2018 15:17:36 | checking for strip... strip |
| 05-Oct-2018 15:17:36 | checking for ranlib... ranlib |
| 05-Oct-2018 15:17:36 | checking command to parse /usr/bin/nm -B output from gcc object... ok |
| 05-Oct-2018 15:17:36 | checking for sysroot... no |
| 05-Oct-2018 15:17:36 | checking for mt... no |
| 05-Oct-2018 15:17:36 | checking if : is a manifest tool... no |
| 05-Oct-2018 15:17:36 | checking for ANSI C header files... yes |
| 05-Oct-2018 15:17:36 | checking for sys/types.h... yes |
| 05-Oct-2018 15:17:36 | checking for sys/stat.h... yes |
| 05-Oct-2018 15:17:36 | checking for stdlib.h... yes |
| 05-Oct-2018 15:17:36 | checking for string.h... yes |
| 05-Oct-2018 15:17:36 | checking for memory.h... yes |
| 05-Oct-2018 15:17:36 | checking for strings.h... yes |
| 05-Oct-2018 15:17:36 | checking for inttypes.h... yes |
| 05-Oct-2018 15:17:36 | checking for stdint.h... yes |
| 05-Oct-2018 15:17:36 | checking for unistd.h... yes |
| 05-Oct-2018 15:17:36 | checking for dlfcn.h... yes |
| 05-Oct-2018 15:17:36 | checking for objdir... .libs |
| 05-Oct-2018 15:17:36 | checking if gcc supports -fno-rtti -fno-exceptions... no |
| 05-Oct-2018 15:17:36 | checking for gcc option to produce PIC... -fPIC -DPIC |
| 05-Oct-2018 15:17:36 | checking if gcc PIC flag -fPIC -DPIC works... yes |
| 05-Oct-2018 15:17:36 | checking if gcc static flag -static works... yes |
| 05-Oct-2018 15:17:36 | checking if gcc supports -c -o file.o... yes |
| 05-Oct-2018 15:17:36 | checking if gcc supports -c -o file.o... (cached) yes |
| 05-Oct-2018 15:17:36 | checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes |
| 05-Oct-2018 15:17:37 | checking whether -lc should be explicitly linked in... no |
| 05-Oct-2018 15:17:37 | checking dynamic linker characteristics... GNU/Linux ld.so |
| 05-Oct-2018 15:17:37 | checking how to hardcode library paths into programs... immediate |
| 05-Oct-2018 15:17:37 | checking whether stripping libraries is possible... yes |
| 05-Oct-2018 15:17:37 | checking if libtool supports shared libraries... yes |
| 05-Oct-2018 15:17:37 | checking whether to build shared libraries... yes |
| 05-Oct-2018 15:17:37 | checking whether to build static libraries... yes |
| 05-Oct-2018 15:17:37 | checking how to run the C++ preprocessor... g++ -E |
| 05-Oct-2018 15:17:37 | checking for ld used by g++... /usr/bin/ld -m elf_x86_64 |
| 05-Oct-2018 15:17:37 | checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes |
| 05-Oct-2018 15:17:37 | checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes |
| 05-Oct-2018 15:17:37 | checking for g++ option to produce PIC... -fPIC -DPIC |
| 05-Oct-2018 15:17:37 | checking if g++ PIC flag -fPIC -DPIC works... yes |
| 05-Oct-2018 15:17:37 | checking if g++ static flag -static works... yes |
| 05-Oct-2018 15:17:37 | checking if g++ supports -c -o file.o... yes |
| 05-Oct-2018 15:17:37 | checking if g++ supports -c -o file.o... (cached) yes |
| 05-Oct-2018 15:17:37 | checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes |
| 05-Oct-2018 15:17:37 | checking dynamic linker characteristics... (cached) GNU/Linux ld.so |
| 05-Oct-2018 15:17:37 | checking how to hardcode library paths into programs... immediate |
| 05-Oct-2018 15:17:37 | checking whether to enable maintainer-specific portions of Makefiles... no |
| 05-Oct-2018 15:17:37 | checking for working memcmp... yes |
| 05-Oct-2018 15:17:37 | checking whether lstat correctly handles trailing slash... yes |
| 05-Oct-2018 15:17:37 | checking whether stat accepts an empty string... no |
| 05-Oct-2018 15:17:37 | checking for working strtod... yes |
| 05-Oct-2018 15:17:37 | checking for canonicalize_file_name... yes |
| 05-Oct-2018 15:17:38 | checking for floor... no |
| 05-Oct-2018 15:17:38 | checking for gethostname... yes |
| 05-Oct-2018 15:17:38 | checking for getpagesize... yes |
| 05-Oct-2018 15:17:38 | checking for getrusage... yes |
| 05-Oct-2018 15:17:38 | checking for memchr... yes |
| 05-Oct-2018 15:17:38 | checking for memmove... yes |
| 05-Oct-2018 15:17:38 | checking for memset... yes |
| 05-Oct-2018 15:17:38 | checking for mkstemp... yes |
| 05-Oct-2018 15:17:38 | checking for pow... no |
| 05-Oct-2018 15:17:38 | checking for readlink... yes |
| 05-Oct-2018 15:17:38 | checking for realpath... yes |
| 05-Oct-2018 15:17:38 | checking for regcomp... yes |
| 05-Oct-2018 15:17:38 | checking for setlocale... yes |
| 05-Oct-2018 15:17:38 | checking for sqrt... no |
| 05-Oct-2018 15:17:38 | checking for strchr... yes |
| 05-Oct-2018 15:17:38 | checking for strerror... yes |
| 05-Oct-2018 15:17:39 | checking for strpbrk... yes |
| 05-Oct-2018 15:17:39 | checking for strrchr... yes |
| 05-Oct-2018 15:17:39 | checking for strstr... yes |
| 05-Oct-2018 15:17:39 | checking for strtol... yes |
| 05-Oct-2018 15:17:39 | checking for ANSI C header files... (cached) yes |
| 05-Oct-2018 15:17:39 | checking getopt.h usability... yes |
| 05-Oct-2018 15:17:39 | checking getopt.h presence... yes |
| 05-Oct-2018 15:17:39 | checking for getopt.h... yes |
| 05-Oct-2018 15:17:39 | checking libintl.h usability... yes |
| 05-Oct-2018 15:17:39 | checking libintl.h presence... yes |
| 05-Oct-2018 15:17:39 | checking for libintl.h... yes |
| 05-Oct-2018 15:17:39 | checking limits.h usability... yes |
| 05-Oct-2018 15:17:39 | checking limits.h presence... yes |
| 05-Oct-2018 15:17:39 | checking for limits.h... yes |
| 05-Oct-2018 15:17:39 | checking locale.h usability... yes |
| 05-Oct-2018 15:17:39 | checking locale.h presence... yes |
| 05-Oct-2018 15:17:39 | checking for locale.h... yes |
| 05-Oct-2018 15:17:39 | checking netinet/in.h usability... yes |
| 05-Oct-2018 15:17:39 | checking netinet/in.h presence... yes |
| 05-Oct-2018 15:17:39 | checking for netinet/in.h... yes |
| 05-Oct-2018 15:17:39 | checking for stdlib.h... (cached) yes |
| 05-Oct-2018 15:17:39 | checking for string.h... (cached) yes |
| 05-Oct-2018 15:17:39 | checking for strings.h... (cached) yes |
| 05-Oct-2018 15:17:39 | checking for unistd.h... (cached) yes |
| 05-Oct-2018 15:17:39 | checking cstdlib usability... yes |
| 05-Oct-2018 15:17:39 | checking cstdlib presence... yes |
| 05-Oct-2018 15:17:39 | checking for cstdlib... yes |
| 05-Oct-2018 15:17:39 | checking for an ANSI C-conforming const... yes |
| 05-Oct-2018 15:17:39 | checking for inline... inline |
| 05-Oct-2018 15:17:39 | checking for pid_t... yes |
| 05-Oct-2018 15:17:39 | checking for size_t... yes |
| 05-Oct-2018 15:17:39 | checking whether struct tm is in sys/time.h or time.h... time.h |
| 05-Oct-2018 15:17:39 | checking for uid_t in sys/types.h... yes |
| 05-Oct-2018 15:17:39 | checking for ptrdiff_t... yes |
| 05-Oct-2018 15:17:40 | checking size of int*... 8 |
| 05-Oct-2018 15:17:40 | checking whether C++ compiler implements namespaces... yes |
| 05-Oct-2018 15:17:40 | checking whether C++ compiler has working valarray<T>... yes |
| 05-Oct-2018 15:17:40 | checking for special C compiler options needed for large files... no |
| 05-Oct-2018 15:17:40 | checking for _FILE_OFFSET_BITS value needed for large files... no |
| 05-Oct-2018 15:17:40 | ################################# |
| 05-Oct-2018 15:17:40 | # Test for netCDF # |
| 05-Oct-2018 15:17:40 | ################################ |
| 05-Oct-2018 15:17:40 | checking for /opt/local/include/netcdf.h... no |
| 05-Oct-2018 15:17:40 | checking for /opt/local/lib/libnetcdf.a... no |
| 05-Oct-2018 15:17:40 | checking netcdf.h usability... yes |
| 05-Oct-2018 15:17:40 | checking netcdf.h presence... yes |
| 05-Oct-2018 15:17:40 | checking for netcdf.h... yes |
| 05-Oct-2018 15:17:40 | checking for nc_open in -lnetcdf... yes |
| 05-Oct-2018 15:17:40 | ################################# |
| 05-Oct-2018 15:17:40 | # Test for netCDF4 support # |
| 05-Oct-2018 15:17:40 | ################################# |
| 05-Oct-2018 15:17:40 | checking whether NC_CHUNKED is declared... yes |
| 05-Oct-2018 15:17:40 | configure: netcdf.h contains netCDF4 definitions |
| 05-Oct-2018 15:17:40 | checking for nc_def_var_chunking in -lnetcdf... yes |
| 05-Oct-2018 15:17:40 | configure: Good news: Simple program compiles and links to netCDF4 library |
| 05-Oct-2018 15:17:40 | checking for gcc option to support OpenMP... -fopenmp |
| 05-Oct-2018 15:17:40 | configure: OpenMP support enabled |
| 05-Oct-2018 15:17:40 | Beginning generic tests for DAP support |
| 05-Oct-2018 15:17:40 | Testing for DAP-netCDF support (is DAP in libnetcdf.a?)... |
| 05-Oct-2018 15:17:40 | checking for daperror in -lnetcdf... no |
| 05-Oct-2018 15:17:40 | configure: WARNING: DAP-netCDF support through libnetcdf.a disabled (missing DAP functions) |
| 05-Oct-2018 15:17:40 | checking for getopt_long... yes |
| 05-Oct-2018 15:17:40 | checking for _g95_ac_array in -lf95... no |
| 05-Oct-2018 15:17:40 | checking for sin in -lm... yes |
| 05-Oct-2018 15:17:41 | checking for sinf in -lsunmath... no |
| 05-Oct-2018 15:17:41 | checking for gettext in -lintl... no |
| 05-Oct-2018 15:17:41 | checking for res_init in -lresolv... no |
| 05-Oct-2018 15:17:41 | checking for main in -lsocket... no |
| 05-Oct-2018 15:17:41 | checking for main in -lthread... no |
| 05-Oct-2018 15:17:41 | checking for nco_open in -lnco... no |
| 05-Oct-2018 15:17:41 | checking for nc_inq_format... yes |
| 05-Oct-2018 15:17:41 | checking for getopt... yes |
| 05-Oct-2018 15:17:41 | checking for getopt_long... (cached) yes |
| 05-Oct-2018 15:17:41 | checking for atan2... yes |
| 05-Oct-2018 15:17:41 | checking for acosf... yes |
| 05-Oct-2018 15:17:41 | checking for asinf... yes |
| 05-Oct-2018 15:17:41 | checking for atanf... yes |
| 05-Oct-2018 15:17:41 | checking for atan2f... yes |
| 05-Oct-2018 15:17:41 | checking for cosf... yes |
| 05-Oct-2018 15:17:42 | checking for expf... yes |
| 05-Oct-2018 15:17:42 | checking for fabsf... yes |
| 05-Oct-2018 15:17:42 | checking for fmodf... yes |
| 05-Oct-2018 15:17:42 | checking for log10f... yes |
| 05-Oct-2018 15:17:42 | checking for logf... yes |
| 05-Oct-2018 15:17:42 | checking for powf... yes |
| 05-Oct-2018 15:17:42 | checking for sinf... yes |
| 05-Oct-2018 15:17:42 | checking for sqrtf... yes |
| 05-Oct-2018 15:17:42 | checking for tanf... yes |
| 05-Oct-2018 15:17:42 | checking for erff... yes |
| 05-Oct-2018 15:17:42 | checking for erfcf... yes |
| 05-Oct-2018 15:17:43 | checking for gammaf... yes |
| 05-Oct-2018 15:17:43 | checking for acoshf... yes |
| 05-Oct-2018 15:17:43 | checking for asinhf... yes |
| 05-Oct-2018 15:17:43 | checking for atanhf... yes |
| 05-Oct-2018 15:17:43 | checking for coshf... yes |
| 05-Oct-2018 15:17:43 | checking for sinhf... yes |
| 05-Oct-2018 15:17:43 | checking for tanhf... yes |
| 05-Oct-2018 15:17:43 | checking for ceilf... yes |
| 05-Oct-2018 15:17:43 | checking for floorf... yes |
| 05-Oct-2018 15:17:43 | checking for nearbyint... yes |
| 05-Oct-2018 15:17:43 | checking for rint... yes |
| 05-Oct-2018 15:17:44 | checking for round... yes |
| 05-Oct-2018 15:17:44 | checking for trunc... yes |
| 05-Oct-2018 15:17:44 | checking for nearbyintf... yes |
| 05-Oct-2018 15:17:44 | checking for rintf... yes |
| 05-Oct-2018 15:17:44 | checking for roundf... yes |
| 05-Oct-2018 15:17:44 | checking for truncf... yes |
| 05-Oct-2018 15:17:44 | checking for getopt_long... (cached) yes |
| 05-Oct-2018 15:17:44 | checking for strdup... yes |
| 05-Oct-2018 15:17:44 | checking for strcasecmp... yes |
| 05-Oct-2018 15:17:44 | checking for strsep... yes |
| 05-Oct-2018 15:17:44 | checking for strcasestr... yes |
| 05-Oct-2018 15:17:44 | ########################################################## |
| 05-Oct-2018 15:17:44 | # Sorting out MacOSX build parameters # |
| 05-Oct-2018 15:17:44 | ########################################################## |
| 05-Oct-2018 15:17:44 | ################################# |
| 05-Oct-2018 15:17:44 | # Testing for ANTLR support # |
| 05-Oct-2018 15:17:44 | ################################# |
| 05-Oct-2018 15:17:44 | checking for runantlr... runantlr |
| 05-Oct-2018 15:17:44 | configure: antlr library was found |
| 05-Oct-2018 15:17:44 | ################################################## |
| 05-Oct-2018 15:17:44 | # Testing for ESMF support (only for developers) # |
| 05-Oct-2018 15:17:44 | ################################################## |
| 05-Oct-2018 15:17:44 | ######################################## |
| 05-Oct-2018 15:17:44 | # Testing for GSL support # |
| 05-Oct-2018 15:17:44 | ######################################## |
| 05-Oct-2018 15:17:44 | configure: WARNING: Did not find 'gsl-config' command in your default path |
| 05-Oct-2018 15:17:44 | checking regex.h usability... yes |
| 05-Oct-2018 15:17:44 | checking regex.h presence... yes |
| 05-Oct-2018 15:17:44 | checking for regex.h... yes |
| 05-Oct-2018 15:17:44 | checking for sys/types.h... (cached) yes |
| 05-Oct-2018 15:17:45 | checking for regexec... yes |
| 05-Oct-2018 15:17:45 | checking for regcomp... (cached) yes |
| 05-Oct-2018 15:17:45 | checking for regfree... yes |
| 05-Oct-2018 15:17:45 | ######################################## |
| 05-Oct-2018 15:17:45 | # Testing for UDUNITS support # |
| 05-Oct-2018 15:17:45 | ######################################## |
| 05-Oct-2018 15:17:45 | WARNING: Requested both UDUnits and UDUnits2 support---overriding UDUnits |
| 05-Oct-2018 15:17:45 | Will attempt to build NCO with UDUnits support from libudunits2, not from libudunits |
| 05-Oct-2018 15:17:45 | checking for XML_ParserCreate in -lexpat... yes |
| 05-Oct-2018 15:17:45 | checking for /usr/include/udunits2/udunits2.h... no |
| 05-Oct-2018 15:17:45 | checking for /usr/include/udunits2.h... yes |
| 05-Oct-2018 15:17:45 | checking for /usr/lib/x86_64-linux-gnu/libudunits2.a... yes |
| 05-Oct-2018 15:17:45 | checking for /usr/lib/i386-linux-gnu/libudunits2.a... no |
| 05-Oct-2018 15:17:45 | checking for /opt/local/include/udunits2/udunits2.h... no |
| 05-Oct-2018 15:17:45 | checking for /opt/local/lib/libudunits2.a... no |
| 05-Oct-2018 15:17:45 | checking for ... no |
| 05-Oct-2018 15:17:45 | configure: WARNING: file was not found but will still attempt to build NCO with UDUnits2 support. |
| 05-Oct-2018 15:17:45 | configure: NB: Following tests of UDUnits2 library and header must succeed for UDUnits2 support: |
| 05-Oct-2018 15:17:45 | checking for ut_read_xml in -ludunits2... yes |
| 05-Oct-2018 15:17:45 | checking udunits2.h usability... yes |
| 05-Oct-2018 15:17:45 | checking udunits2.h presence... yes |
| 05-Oct-2018 15:17:45 | checking for udunits2.h... yes |
| 05-Oct-2018 15:17:45 | configure: UDUnits2 support enabled |
| 05-Oct-2018 15:17:45 | checking for ncgen... /srv/sw/netcdf-4.4.1/bin/ncgen |
| 05-Oct-2018 15:17:45 | configure: Creating sample netCDF data files for self-tests |
| 05-Oct-2018 15:17:45 | ############################### |
| 05-Oct-2018 15:17:45 | # Require Shared Libs? # |
| 05-Oct-2018 15:17:45 | ############################### |
| 05-Oct-2018 15:17:45 | checking for makeinfo... no |
| 05-Oct-2018 15:17:45 | checking that generated files are newer than configure... done |
| 05-Oct-2018 15:17:45 | configure: creating ./config.status |
| 05-Oct-2018 15:17:46 | config.status: creating Makefile |
| 05-Oct-2018 15:17:46 | config.status: creating data/Makefile |
| 05-Oct-2018 15:17:46 | config.status: creating src/Makefile |
| 05-Oct-2018 15:17:46 | config.status: creating src/nco/Makefile |
| 05-Oct-2018 15:17:46 | config.status: creating man/Makefile |
| 05-Oct-2018 15:17:46 | config.status: creating src/nco_c++/Makefile |
| 05-Oct-2018 15:17:46 | config.status: creating src/nco++/Makefile |
| 05-Oct-2018 15:17:46 | config.status: creating config.h |
| 05-Oct-2018 15:17:46 | config.status: executing depfiles commands |
| 05-Oct-2018 15:17:46 | config.status: executing libtool commands |
| 05-Oct-2018 15:17:46 | |
| 05-Oct-2018 15:17:46 | Configuration Parameters: |
| 05-Oct-2018 15:17:46 | AR_FLAGS............. cru |
| 05-Oct-2018 15:17:46 | CC................... gcc |
| 05-Oct-2018 15:17:46 | CFLAGS............... -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE |
| 05-Oct-2018 15:17:46 | CPP.................. gcc -E |
| 05-Oct-2018 15:17:46 | CPPFLAGS............. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include |
| 05-Oct-2018 15:17:46 | CXX.................. g++ |
| 05-Oct-2018 15:17:46 | CXXFLAGS............. -g -O2 |
| 05-Oct-2018 15:17:46 | ENABLE_DAP........... no |
| 05-Oct-2018 15:17:46 | ENABLE_ESMF...........no |
| 05-Oct-2018 15:17:46 | ENABLE_GSL........... no |
| 05-Oct-2018 15:17:46 | ENABLE_NETCDF4....... yes |
| 05-Oct-2018 15:17:46 | ENABLE_OPENMP........ yes |
| 05-Oct-2018 15:17:46 | ENABLE_UDUNITS....... no |
| 05-Oct-2018 15:17:46 | ENABLE_UDUNITS2...... yes |
| 05-Oct-2018 15:17:46 | GSL_ROOT............. |
| 05-Oct-2018 15:17:46 | HAVE_ANTLR........... runantlr |
| 05-Oct-2018 15:17:46 | HAVE_MAKEINFO........ no |
| 05-Oct-2018 15:17:46 | HAVE_NETCDF4_H....... yes |
| 05-Oct-2018 15:17:46 | HOST................. |
| 05-Oct-2018 15:17:46 | HOSTNAME............. 0b4daa9ecb3a |
| 05-Oct-2018 15:17:46 | LDFLAGS.............. -L/srv/sw/netcdf-4.4.1/lib -lnetcdf -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu |
| 05-Oct-2018 15:17:46 | LIBS................. -ludunits2 -lexpat -lm -lnetcdf -lnetcdf -ludunits2 |
| 05-Oct-2018 15:17:46 | NETCDF_ROOT.......... /srv/sw/netcdf-4.4.1 |
| 05-Oct-2018 15:17:46 | OPENMP_CFLAGS........ -fopenmp |
| 05-Oct-2018 15:17:46 | host................. x86_64-unknown-linux-gnu |
| 05-Oct-2018 15:17:46 | install prefix ...... /srv/sw/nco-4.6.7 |
| 05-Oct-2018 15:17:46 | ******************************************************************* |
| 05-Oct-2018 15:17:46 | Configuration complete. You are now ready to run 'make'. |
| 05-Oct-2018 15:17:46 | Ensure 'make' points to GNU Make (AT&T Make chokes on GNU syntax). |
| 05-Oct-2018 15:17:46 | If the build fails, please examine the file 'configure.eg' |
| 05-Oct-2018 15:17:46 | in the top-level NCO directory. It contains examples known to |
| 05-Oct-2018 15:17:46 | build NCO for various platforms and compilers. |
| 05-Oct-2018 15:17:46 | ******************************************************************* |
| 05-Oct-2018 15:17:46 | make all-recursive |
| 05-Oct-2018 15:17:46 | make[1]: Entering directory '/srv/downloads/nco-4.6.7' |
| 05-Oct-2018 15:17:46 | Making all in data |
| 05-Oct-2018 15:17:46 | make[2]: Entering directory '/srv/downloads/nco-4.6.7/data' |
| 05-Oct-2018 15:17:46 | /srv/sw/netcdf-4.4.1/bin/ncgen -o big.nc big.cdl |
| 05-Oct-2018 15:17:46 | /srv/sw/netcdf-4.4.1/bin/ncgen -o in_rec_zero.nc in_rec_zero.cdl |
| 05-Oct-2018 15:17:46 | ncks -O -7 --cnk_dmn time,10 in.nc in_4c.nc |
| 05-Oct-2018 15:17:46 | /bin/bash: ncks: command not found |
| 05-Oct-2018 15:17:46 | make[2]: [Makefile:562: in_4c.nc] Error 127 (ignored) |
| 05-Oct-2018 15:17:46 | /srv/sw/netcdf-4.4.1/bin/ncgen -k netCDF-4 -o in_grp_8.nc in_grp_8.cdl |
| 05-Oct-2018 15:17:46 | /srv/sw/netcdf-4.4.1/bin/ncgen -k netCDF-4 -o hdn.nc hdn.cdl |
| 05-Oct-2018 15:17:46 | /srv/sw/netcdf-4.4.1/bin/ncgen -k netCDF-4 -o mrd.nc mrd.cdl |
| 05-Oct-2018 15:17:46 | /srv/sw/netcdf-4.4.1/bin/ncgen -k netCDF-4 -o split.nc split.cdl |
| 05-Oct-2018 15:17:47 | make[2]: Leaving directory '/srv/downloads/nco-4.6.7/data' |
| 05-Oct-2018 15:17:47 | Making all in src |
| 05-Oct-2018 15:17:47 | make[2]: Entering directory '/srv/downloads/nco-4.6.7/src' |
| 05-Oct-2018 15:17:47 | Making all in nco |
| 05-Oct-2018 15:17:47 | make[3]: Entering directory '/srv/downloads/nco-4.6.7/src/nco' |
| 05-Oct-2018 15:17:47 | test -f ncap_yacc.c || /bin/bash ../../autobld/ylwrap ncap_yacc.y y.tab.c ncap_yacc.c y.tab.h `echo ncap_yacc.c | sed -e s/cc$/hh/ -e s/cpp$/hpp/ -e s/cxx$/hxx/ -e s/c++$/h++/ -e s/c$/h/` y.output ncap_yacc.output -- bison -y -d --name-prefix=nco_yy |
| 05-Oct-2018 15:17:47 | updating ncap_yacc.h |
| 05-Oct-2018 15:17:47 | make all-am |
| 05-Oct-2018 15:17:47 | make[4]: Entering directory '/srv/downloads/nco-4.6.7/src/nco' |
| 05-Oct-2018 15:17:47 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_att_utl.lo -MD -MP -MF .deps/nco_att_utl.Tpo -c -o nco_att_utl.lo nco_att_utl.c |
| 05-Oct-2018 15:17:47 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_att_utl.lo -MD -MP -MF .deps/nco_att_utl.Tpo -c nco_att_utl.c -fPIC -DPIC -o .libs/nco_att_utl.o |
| 05-Oct-2018 15:17:47 | In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, |
| 05-Oct-2018 15:17:47 | from /usr/include/math.h:27, |
| 05-Oct-2018 15:17:47 | from nco_att_utl.h:21, |
| 05-Oct-2018 15:17:47 | from nco_att_utl.c:10: |
| 05-Oct-2018 15:17:47 | /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 05-Oct-2018 15:17:47 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 05-Oct-2018 15:17:47 | ^~~~~~~ |
| 05-Oct-2018 15:17:47 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_att_utl.lo -MD -MP -MF .deps/nco_att_utl.Tpo -c nco_att_utl.c -o nco_att_utl.o >/dev/null 2>&1 |
| 05-Oct-2018 15:17:48 | mv -f .deps/nco_att_utl.Tpo .deps/nco_att_utl.Plo |
| 05-Oct-2018 15:17:48 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_aux.lo -MD -MP -MF .deps/nco_aux.Tpo -c -o nco_aux.lo nco_aux.c |
| 05-Oct-2018 15:17:48 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_aux.lo -MD -MP -MF .deps/nco_aux.Tpo -c nco_aux.c -fPIC -DPIC -o .libs/nco_aux.o |
| 05-Oct-2018 15:17:48 | In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, |
| 05-Oct-2018 15:17:48 | from /usr/include/math.h:27, |
| 05-Oct-2018 15:17:48 | from nco_aux.h:17, |
| 05-Oct-2018 15:17:48 | from nco_aux.c:22: |
| 05-Oct-2018 15:17:48 | /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 05-Oct-2018 15:17:48 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 05-Oct-2018 15:17:48 | ^~~~~~~ |
| 05-Oct-2018 15:17:48 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_aux.lo -MD -MP -MF .deps/nco_aux.Tpo -c nco_aux.c -o nco_aux.o >/dev/null 2>&1 |
| 05-Oct-2018 15:17:49 | mv -f .deps/nco_aux.Tpo .deps/nco_aux.Plo |
| 05-Oct-2018 15:17:49 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_bnr.lo -MD -MP -MF .deps/nco_bnr.Tpo -c -o nco_bnr.lo nco_bnr.c |
| 05-Oct-2018 15:17:49 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_bnr.lo -MD -MP -MF .deps/nco_bnr.Tpo -c nco_bnr.c -fPIC -DPIC -o .libs/nco_bnr.o |
| 05-Oct-2018 15:17:49 | In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, |
| 05-Oct-2018 15:17:49 | from /usr/include/stdio.h:27, |
| 05-Oct-2018 15:17:49 | from nco_bnr.h:17, |
| 05-Oct-2018 15:17:49 | from nco_bnr.c:10: |
| 05-Oct-2018 15:17:49 | /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 05-Oct-2018 15:17:49 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 05-Oct-2018 15:17:49 | ^~~~~~~ |
| 05-Oct-2018 15:17:49 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_bnr.lo -MD -MP -MF .deps/nco_bnr.Tpo -c nco_bnr.c -o nco_bnr.o >/dev/null 2>&1 |
| 05-Oct-2018 15:17:49 | mv -f .deps/nco_bnr.Tpo .deps/nco_bnr.Plo |
| 05-Oct-2018 15:17:49 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_cln_utl.lo -MD -MP -MF .deps/nco_cln_utl.Tpo -c -o nco_cln_utl.lo nco_cln_utl.c |
| 05-Oct-2018 15:17:49 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_cln_utl.lo -MD -MP -MF .deps/nco_cln_utl.Tpo -c nco_cln_utl.c -fPIC -DPIC -o .libs/nco_cln_utl.o |
| 05-Oct-2018 15:17:49 | In file included from /usr/include/ctype.h:25, |
| 05-Oct-2018 15:17:49 | from nco_cln_utl.h:25, |
| 05-Oct-2018 15:17:49 | from nco_cln_utl.c:10: |
| 05-Oct-2018 15:17:49 | /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 05-Oct-2018 15:17:49 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 05-Oct-2018 15:17:49 | ^~~~~~~ |
| 05-Oct-2018 15:17:49 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_cln_utl.lo -MD -MP -MF .deps/nco_cln_utl.Tpo -c nco_cln_utl.c -o nco_cln_utl.o >/dev/null 2>&1 |
| 05-Oct-2018 15:17:50 | mv -f .deps/nco_cln_utl.Tpo .deps/nco_cln_utl.Plo |
| 05-Oct-2018 15:17:50 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_cnf_dmn.lo -MD -MP -MF .deps/nco_cnf_dmn.Tpo -c -o nco_cnf_dmn.lo nco_cnf_dmn.c |
| 05-Oct-2018 15:17:50 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_cnf_dmn.lo -MD -MP -MF .deps/nco_cnf_dmn.Tpo -c nco_cnf_dmn.c -fPIC -DPIC -o .libs/nco_cnf_dmn.o |
| 05-Oct-2018 15:17:50 | In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, |
| 05-Oct-2018 15:17:50 | from /usr/include/stdio.h:27, |
| 05-Oct-2018 15:17:50 | from nco_cnf_dmn.h:17, |
| 05-Oct-2018 15:17:50 | from nco_cnf_dmn.c:10: |
| 05-Oct-2018 15:17:50 | /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 05-Oct-2018 15:17:50 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 05-Oct-2018 15:17:50 | ^~~~~~~ |
| 05-Oct-2018 15:17:50 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_cnf_dmn.lo -MD -MP -MF .deps/nco_cnf_dmn.Tpo -c nco_cnf_dmn.c -o nco_cnf_dmn.o >/dev/null 2>&1 |
| 05-Oct-2018 15:17:50 | mv -f .deps/nco_cnf_dmn.Tpo .deps/nco_cnf_dmn.Plo |
| 05-Oct-2018 15:17:50 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_cnf_typ.lo -MD -MP -MF .deps/nco_cnf_typ.Tpo -c -o nco_cnf_typ.lo nco_cnf_typ.c |
| 05-Oct-2018 15:17:50 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_cnf_typ.lo -MD -MP -MF .deps/nco_cnf_typ.Tpo -c nco_cnf_typ.c -fPIC -DPIC -o .libs/nco_cnf_typ.o |
| 05-Oct-2018 15:17:50 | In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, |
| 05-Oct-2018 15:17:50 | from /usr/include/math.h:27, |
| 05-Oct-2018 15:17:50 | from nco_cnf_typ.h:17, |
| 05-Oct-2018 15:17:50 | from nco_cnf_typ.c:10: |
| 05-Oct-2018 15:17:50 | /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 05-Oct-2018 15:17:50 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 05-Oct-2018 15:17:50 | ^~~~~~~ |
| 05-Oct-2018 15:17:51 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_cnf_typ.lo -MD -MP -MF .deps/nco_cnf_typ.Tpo -c nco_cnf_typ.c -o nco_cnf_typ.o >/dev/null 2>&1 |
| 05-Oct-2018 15:17:52 | mv -f .deps/nco_cnf_typ.Tpo .deps/nco_cnf_typ.Plo |
| 05-Oct-2018 15:17:52 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_cnk.lo -MD -MP -MF .deps/nco_cnk.Tpo -c -o nco_cnk.lo nco_cnk.c |
| 05-Oct-2018 15:17:52 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_cnk.lo -MD -MP -MF .deps/nco_cnk.Tpo -c nco_cnk.c -fPIC -DPIC -o .libs/nco_cnk.o |
| 05-Oct-2018 15:17:52 | In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, |
| 05-Oct-2018 15:17:52 | from /usr/include/math.h:27, |
| 05-Oct-2018 15:17:52 | from nco_cnk.h:17, |
| 05-Oct-2018 15:17:52 | from nco_cnk.c:45: |
| 05-Oct-2018 15:17:52 | /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 05-Oct-2018 15:17:52 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 05-Oct-2018 15:17:52 | ^~~~~~~ |
| 05-Oct-2018 15:17:52 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_cnk.lo -MD -MP -MF .deps/nco_cnk.Tpo -c nco_cnk.c -o nco_cnk.o >/dev/null 2>&1 |
| 05-Oct-2018 15:17:53 | mv -f .deps/nco_cnk.Tpo .deps/nco_cnk.Plo |
| 05-Oct-2018 15:17:53 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_cnv_arm.lo -MD -MP -MF .deps/nco_cnv_arm.Tpo -c -o nco_cnv_arm.lo nco_cnv_arm.c |
| 05-Oct-2018 15:17:53 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_cnv_arm.lo -MD -MP -MF .deps/nco_cnv_arm.Tpo -c nco_cnv_arm.c -fPIC -DPIC -o .libs/nco_cnv_arm.o |
| 05-Oct-2018 15:17:53 | In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, |
| 05-Oct-2018 15:17:53 | from /usr/include/stdio.h:27, |
| 05-Oct-2018 15:17:53 | from nco_cnv_arm.h:17, |
| 05-Oct-2018 15:17:53 | from nco_cnv_arm.c:10: |
| 05-Oct-2018 15:17:53 | /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 05-Oct-2018 15:17:53 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 05-Oct-2018 15:17:53 | ^~~~~~~ |
| 05-Oct-2018 15:17:53 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_cnv_arm.lo -MD -MP -MF .deps/nco_cnv_arm.Tpo -c nco_cnv_arm.c -o nco_cnv_arm.o >/dev/null 2>&1 |
| 05-Oct-2018 15:17:53 | mv -f .deps/nco_cnv_arm.Tpo .deps/nco_cnv_arm.Plo |
| 05-Oct-2018 15:17:53 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_cnv_csm.lo -MD -MP -MF .deps/nco_cnv_csm.Tpo -c -o nco_cnv_csm.lo nco_cnv_csm.c |
| 05-Oct-2018 15:17:53 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_cnv_csm.lo -MD -MP -MF .deps/nco_cnv_csm.Tpo -c nco_cnv_csm.c -fPIC -DPIC -o .libs/nco_cnv_csm.o |
| 05-Oct-2018 15:17:53 | In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, |
| 05-Oct-2018 15:17:53 | from /usr/include/stdio.h:27, |
| 05-Oct-2018 15:17:53 | from nco_cnv_csm.h:17, |
| 05-Oct-2018 15:17:53 | from nco_cnv_csm.c:10: |
| 05-Oct-2018 15:17:53 | /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 05-Oct-2018 15:17:53 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 05-Oct-2018 15:17:53 | ^~~~~~~ |
| 05-Oct-2018 15:17:53 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_cnv_csm.lo -MD -MP -MF .deps/nco_cnv_csm.Tpo -c nco_cnv_csm.c -o nco_cnv_csm.o >/dev/null 2>&1 |
| 05-Oct-2018 15:17:54 | mv -f .deps/nco_cnv_csm.Tpo .deps/nco_cnv_csm.Plo |
| 05-Oct-2018 15:17:54 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_ctl.lo -MD -MP -MF .deps/nco_ctl.Tpo -c -o nco_ctl.lo nco_ctl.c |
| 05-Oct-2018 15:17:54 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_ctl.lo -MD -MP -MF .deps/nco_ctl.Tpo -c nco_ctl.c -fPIC -DPIC -o .libs/nco_ctl.o |
| 05-Oct-2018 15:17:54 | In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, |
| 05-Oct-2018 15:17:54 | from /usr/include/stdio.h:27, |
| 05-Oct-2018 15:17:54 | from nco_ctl.h:21, |
| 05-Oct-2018 15:17:54 | from nco_ctl.c:10: |
| 05-Oct-2018 15:17:54 | /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 05-Oct-2018 15:17:54 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 05-Oct-2018 15:17:54 | ^~~~~~~ |
| 05-Oct-2018 15:17:54 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_ctl.lo -MD -MP -MF .deps/nco_ctl.Tpo -c nco_ctl.c -o nco_ctl.o >/dev/null 2>&1 |
| 05-Oct-2018 15:17:54 | mv -f .deps/nco_ctl.Tpo .deps/nco_ctl.Plo |
| 05-Oct-2018 15:17:54 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_dbg.lo -MD -MP -MF .deps/nco_dbg.Tpo -c -o nco_dbg.lo nco_dbg.c |
| 05-Oct-2018 15:17:54 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_dbg.lo -MD -MP -MF .deps/nco_dbg.Tpo -c nco_dbg.c -fPIC -DPIC -o .libs/nco_dbg.o |
| 05-Oct-2018 15:17:54 | In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, |
| 05-Oct-2018 15:17:54 | from /usr/include/stdio.h:27, |
| 05-Oct-2018 15:17:54 | from nco_dbg.h:17, |
| 05-Oct-2018 15:17:54 | from nco_dbg.c:10: |
| 05-Oct-2018 15:17:54 | /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 05-Oct-2018 15:17:54 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 05-Oct-2018 15:17:54 | ^~~~~~~ |
| 05-Oct-2018 15:17:54 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_dbg.lo -MD -MP -MF .deps/nco_dbg.Tpo -c nco_dbg.c -o nco_dbg.o >/dev/null 2>&1 |
| 05-Oct-2018 15:17:55 | mv -f .deps/nco_dbg.Tpo .deps/nco_dbg.Plo |
| 05-Oct-2018 15:17:55 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_dmn_utl.lo -MD -MP -MF .deps/nco_dmn_utl.Tpo -c -o nco_dmn_utl.lo nco_dmn_utl.c |
| 05-Oct-2018 15:17:55 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_dmn_utl.lo -MD -MP -MF .deps/nco_dmn_utl.Tpo -c nco_dmn_utl.c -fPIC -DPIC -o .libs/nco_dmn_utl.o |
| 05-Oct-2018 15:17:55 | In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, |
| 05-Oct-2018 15:17:55 | from /usr/include/stdio.h:27, |
| 05-Oct-2018 15:17:55 | from nco_dmn_utl.h:21, |
| 05-Oct-2018 15:17:55 | from nco_dmn_utl.c:10: |
| 05-Oct-2018 15:17:55 | /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 05-Oct-2018 15:17:55 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 05-Oct-2018 15:17:55 | ^~~~~~~ |
| 05-Oct-2018 15:17:55 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_dmn_utl.lo -MD -MP -MF .deps/nco_dmn_utl.Tpo -c nco_dmn_utl.c -o nco_dmn_utl.o >/dev/null 2>&1 |
| 05-Oct-2018 15:17:55 | mv -f .deps/nco_dmn_utl.Tpo .deps/nco_dmn_utl.Plo |
| 05-Oct-2018 15:17:55 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_fl_utl.lo -MD -MP -MF .deps/nco_fl_utl.Tpo -c -o nco_fl_utl.lo nco_fl_utl.c |
| 05-Oct-2018 15:17:55 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_fl_utl.lo -MD -MP -MF .deps/nco_fl_utl.Tpo -c nco_fl_utl.c -fPIC -DPIC -o .libs/nco_fl_utl.o |
| 05-Oct-2018 15:17:55 | In file included from /usr/include/errno.h:25, |
| 05-Oct-2018 15:17:55 | from nco_fl_utl.h:21, |
| 05-Oct-2018 15:17:55 | from nco_fl_utl.c:10: |
| 05-Oct-2018 15:17:55 | /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 05-Oct-2018 15:17:55 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 05-Oct-2018 15:17:55 | ^~~~~~~ |
| 05-Oct-2018 15:17:56 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_fl_utl.lo -MD -MP -MF .deps/nco_fl_utl.Tpo -c nco_fl_utl.c -o nco_fl_utl.o >/dev/null 2>&1 |
| 05-Oct-2018 15:17:56 | mv -f .deps/nco_fl_utl.Tpo .deps/nco_fl_utl.Plo |
| 05-Oct-2018 15:17:56 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_grp_utl.lo -MD -MP -MF .deps/nco_grp_utl.Tpo -c -o nco_grp_utl.lo nco_grp_utl.c |
| 05-Oct-2018 15:17:56 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_grp_utl.lo -MD -MP -MF .deps/nco_grp_utl.Tpo -c nco_grp_utl.c -fPIC -DPIC -o .libs/nco_grp_utl.o |
| 05-Oct-2018 15:17:56 | In file included from /usr/include/assert.h:35, |
| 05-Oct-2018 15:17:56 | from nco_grp_utl.h:21, |
| 05-Oct-2018 15:17:56 | from nco_grp_utl.c:19: |
| 05-Oct-2018 15:17:56 | /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 05-Oct-2018 15:17:56 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 05-Oct-2018 15:17:56 | ^~~~~~~ |
| 05-Oct-2018 15:18:00 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_grp_utl.lo -MD -MP -MF .deps/nco_grp_utl.Tpo -c nco_grp_utl.c -o nco_grp_utl.o >/dev/null 2>&1 |
| 05-Oct-2018 15:18:03 | mv -f .deps/nco_grp_utl.Tpo .deps/nco_grp_utl.Plo |
| 05-Oct-2018 15:18:03 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_grp_trv.lo -MD -MP -MF .deps/nco_grp_trv.Tpo -c -o nco_grp_trv.lo nco_grp_trv.c |
| 05-Oct-2018 15:18:03 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_grp_trv.lo -MD -MP -MF .deps/nco_grp_trv.Tpo -c nco_grp_trv.c -fPIC -DPIC -o .libs/nco_grp_trv.o |
| 05-Oct-2018 15:18:03 | In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, |
| 05-Oct-2018 15:18:03 | from /usr/include/string.h:26, |
| 05-Oct-2018 15:18:03 | from nco_grp_trv.h:21, |
| 05-Oct-2018 15:18:03 | from nco_grp_trv.c:14: |
| 05-Oct-2018 15:18:03 | /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 05-Oct-2018 15:18:03 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 05-Oct-2018 15:18:03 | ^~~~~~~ |
| 05-Oct-2018 15:18:04 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_grp_trv.lo -MD -MP -MF .deps/nco_grp_trv.Tpo -c nco_grp_trv.c -o nco_grp_trv.o >/dev/null 2>&1 |
| 05-Oct-2018 15:18:04 | mv -f .deps/nco_grp_trv.Tpo .deps/nco_grp_trv.Plo |
| 05-Oct-2018 15:18:04 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_lmt.lo -MD -MP -MF .deps/nco_lmt.Tpo -c -o nco_lmt.lo nco_lmt.c |
| 05-Oct-2018 15:18:04 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_lmt.lo -MD -MP -MF .deps/nco_lmt.Tpo -c nco_lmt.c -fPIC -DPIC -o .libs/nco_lmt.o |
| 05-Oct-2018 15:18:04 | In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, |
| 05-Oct-2018 15:18:04 | from /usr/include/math.h:27, |
| 05-Oct-2018 15:18:04 | from nco_lmt.h:21, |
| 05-Oct-2018 15:18:04 | from nco_lmt.c:10: |
| 05-Oct-2018 15:18:04 | /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 05-Oct-2018 15:18:04 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 05-Oct-2018 15:18:04 | ^~~~~~~ |
| 05-Oct-2018 15:18:05 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_lmt.lo -MD -MP -MF .deps/nco_lmt.Tpo -c nco_lmt.c -o nco_lmt.o >/dev/null 2>&1 |
| 05-Oct-2018 15:18:05 | mv -f .deps/nco_lmt.Tpo .deps/nco_lmt.Plo |
| 05-Oct-2018 15:18:05 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_lst_utl.lo -MD -MP -MF .deps/nco_lst_utl.Tpo -c -o nco_lst_utl.lo nco_lst_utl.c |
| 05-Oct-2018 15:18:05 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_lst_utl.lo -MD -MP -MF .deps/nco_lst_utl.Tpo -c nco_lst_utl.c -fPIC -DPIC -o .libs/nco_lst_utl.o |
| 05-Oct-2018 15:18:05 | In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, |
| 05-Oct-2018 15:18:05 | from /usr/include/stdio.h:27, |
| 05-Oct-2018 15:18:05 | from nco_lst_utl.h:21, |
| 05-Oct-2018 15:18:05 | from nco_lst_utl.c:10: |
| 05-Oct-2018 15:18:05 | /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 05-Oct-2018 15:18:05 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 05-Oct-2018 15:18:05 | ^~~~~~~ |
| 05-Oct-2018 15:18:06 | nco_lst_utl.c: In function 'nco_fmt_sng_printf_subst': |
| 05-Oct-2018 15:18:06 | nco_lst_utl.c:38:23: warning: unknown escape sequence: '\.' |
| 05-Oct-2018 15:18:06 | const char rx_sng[]="%([+-0#'I])?([0-9]*)?([\.?[0-9]*)?([h+l+Ljzt])?[bcdeEfFgGiosuxX]"; /* [sng] Regular expression pattern */ |
| 05-Oct-2018 15:18:06 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ |
| 05-Oct-2018 15:18:06 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_lst_utl.lo -MD -MP -MF .deps/nco_lst_utl.Tpo -c nco_lst_utl.c -o nco_lst_utl.o >/dev/null 2>&1 |
| 05-Oct-2018 15:18:06 | mv -f .deps/nco_lst_utl.Tpo .deps/nco_lst_utl.Plo |
| 05-Oct-2018 15:18:06 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_md5.lo -MD -MP -MF .deps/nco_md5.Tpo -c -o nco_md5.lo nco_md5.c |
| 05-Oct-2018 15:18:06 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_md5.lo -MD -MP -MF .deps/nco_md5.Tpo -c nco_md5.c -fPIC -DPIC -o .libs/nco_md5.o |
| 05-Oct-2018 15:18:06 | In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, |
| 05-Oct-2018 15:18:06 | from /usr/include/stdio.h:27, |
| 05-Oct-2018 15:18:06 | from nco_md5.h:22, |
| 05-Oct-2018 15:18:06 | from nco_md5.c:25: |
| 05-Oct-2018 15:18:06 | /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 05-Oct-2018 15:18:06 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 05-Oct-2018 15:18:06 | ^~~~~~~ |
| 05-Oct-2018 15:18:06 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_md5.lo -MD -MP -MF .deps/nco_md5.Tpo -c nco_md5.c -o nco_md5.o >/dev/null 2>&1 |
| 05-Oct-2018 15:18:06 | mv -f .deps/nco_md5.Tpo .deps/nco_md5.Plo |
| 05-Oct-2018 15:18:06 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_mmr.lo -MD -MP -MF .deps/nco_mmr.Tpo -c -o nco_mmr.lo nco_mmr.c |
| 05-Oct-2018 15:18:06 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_mmr.lo -MD -MP -MF .deps/nco_mmr.Tpo -c nco_mmr.c -fPIC -DPIC -o .libs/nco_mmr.o |
| 05-Oct-2018 15:18:06 | In file included from /usr/include/errno.h:25, |
| 05-Oct-2018 15:18:06 | from nco_mmr.h:21, |
| 05-Oct-2018 15:18:06 | from nco_mmr.c:27: |
| 05-Oct-2018 15:18:06 | /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 05-Oct-2018 15:18:06 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 05-Oct-2018 15:18:06 | ^~~~~~~ |
| 05-Oct-2018 15:18:07 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_mmr.lo -MD -MP -MF .deps/nco_mmr.Tpo -c nco_mmr.c -o nco_mmr.o >/dev/null 2>&1 |
| 05-Oct-2018 15:18:07 | mv -f .deps/nco_mmr.Tpo .deps/nco_mmr.Plo |
| 05-Oct-2018 15:18:07 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_msa.lo -MD -MP -MF .deps/nco_msa.Tpo -c -o nco_msa.lo nco_msa.c |
| 05-Oct-2018 15:18:07 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_msa.lo -MD -MP -MF .deps/nco_msa.Tpo -c nco_msa.c -fPIC -DPIC -o .libs/nco_msa.o |
| 05-Oct-2018 15:18:07 | In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, |
| 05-Oct-2018 15:18:07 | from /usr/include/stdio.h:27, |
| 05-Oct-2018 15:18:07 | from nco_msa.h:21, |
| 05-Oct-2018 15:18:07 | from nco_msa.c:10: |
| 05-Oct-2018 15:18:07 | /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 05-Oct-2018 15:18:07 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 05-Oct-2018 15:18:07 | ^~~~~~~ |
| 05-Oct-2018 15:18:07 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_msa.lo -MD -MP -MF .deps/nco_msa.Tpo -c nco_msa.c -o nco_msa.o >/dev/null 2>&1 |
| 05-Oct-2018 15:18:08 | mv -f .deps/nco_msa.Tpo .deps/nco_msa.Plo |
| 05-Oct-2018 15:18:08 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_mss_val.lo -MD -MP -MF .deps/nco_mss_val.Tpo -c -o nco_mss_val.lo nco_mss_val.c |
| 05-Oct-2018 15:18:08 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_mss_val.lo -MD -MP -MF .deps/nco_mss_val.Tpo -c nco_mss_val.c -fPIC -DPIC -o .libs/nco_mss_val.o |
| 05-Oct-2018 15:18:08 | In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, |
| 05-Oct-2018 15:18:08 | from /usr/include/stdio.h:27, |
| 05-Oct-2018 15:18:08 | from nco_mss_val.h:21, |
| 05-Oct-2018 15:18:08 | from nco_mss_val.c:10: |
| 05-Oct-2018 15:18:08 | /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 05-Oct-2018 15:18:08 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 05-Oct-2018 15:18:08 | ^~~~~~~ |
| 05-Oct-2018 15:18:08 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_mss_val.lo -MD -MP -MF .deps/nco_mss_val.Tpo -c nco_mss_val.c -o nco_mss_val.o >/dev/null 2>&1 |
| 05-Oct-2018 15:18:09 | mv -f .deps/nco_mss_val.Tpo .deps/nco_mss_val.Plo |
| 05-Oct-2018 15:18:09 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_mta.lo -MD -MP -MF .deps/nco_mta.Tpo -c -o nco_mta.lo nco_mta.c |
| 05-Oct-2018 15:18:09 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_mta.lo -MD -MP -MF .deps/nco_mta.Tpo -c nco_mta.c -fPIC -DPIC -o .libs/nco_mta.o |
| 05-Oct-2018 15:18:09 | In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, |
| 05-Oct-2018 15:18:09 | from /usr/include/stdio.h:27, |
| 05-Oct-2018 15:18:09 | from nco_mta.h:21, |
| 05-Oct-2018 15:18:09 | from nco_mta.c:12: |
| 05-Oct-2018 15:18:09 | /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 05-Oct-2018 15:18:09 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 05-Oct-2018 15:18:09 | ^~~~~~~ |
| 05-Oct-2018 15:18:09 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_mta.lo -MD -MP -MF .deps/nco_mta.Tpo -c nco_mta.c -o nco_mta.o >/dev/null 2>&1 |
| 05-Oct-2018 15:18:09 | mv -f .deps/nco_mta.Tpo .deps/nco_mta.Plo |
| 05-Oct-2018 15:18:09 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_netcdf.lo -MD -MP -MF .deps/nco_netcdf.Tpo -c -o nco_netcdf.lo nco_netcdf.c |
| 05-Oct-2018 15:18:09 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_netcdf.lo -MD -MP -MF .deps/nco_netcdf.Tpo -c nco_netcdf.c -fPIC -DPIC -o .libs/nco_netcdf.o |
| 05-Oct-2018 15:18:09 | In file included from /usr/include/ctype.h:25, |
| 05-Oct-2018 15:18:09 | from nco_netcdf.h:43, |
| 05-Oct-2018 15:18:09 | from nco_netcdf.c:10: |
| 05-Oct-2018 15:18:09 | /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 05-Oct-2018 15:18:09 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 05-Oct-2018 15:18:09 | ^~~~~~~ |
| 05-Oct-2018 15:18:10 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_netcdf.lo -MD -MP -MF .deps/nco_netcdf.Tpo -c nco_netcdf.c -o nco_netcdf.o >/dev/null 2>&1 |
| 05-Oct-2018 15:18:10 | mv -f .deps/nco_netcdf.Tpo .deps/nco_netcdf.Plo |
| 05-Oct-2018 15:18:10 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_omp.lo -MD -MP -MF .deps/nco_omp.Tpo -c -o nco_omp.lo nco_omp.c |
| 05-Oct-2018 15:18:10 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_omp.lo -MD -MP -MF .deps/nco_omp.Tpo -c nco_omp.c -fPIC -DPIC -o .libs/nco_omp.o |
| 05-Oct-2018 15:18:10 | In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, |
| 05-Oct-2018 15:18:10 | from /usr/include/stdio.h:27, |
| 05-Oct-2018 15:18:10 | from nco_omp.h:17, |
| 05-Oct-2018 15:18:10 | from nco_omp.c:10: |
| 05-Oct-2018 15:18:10 | /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 05-Oct-2018 15:18:10 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 05-Oct-2018 15:18:10 | ^~~~~~~ |
| 05-Oct-2018 15:18:10 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_omp.lo -MD -MP -MF .deps/nco_omp.Tpo -c nco_omp.c -o nco_omp.o >/dev/null 2>&1 |
| 05-Oct-2018 15:18:10 | mv -f .deps/nco_omp.Tpo .deps/nco_omp.Plo |
| 05-Oct-2018 15:18:10 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_pck.lo -MD -MP -MF .deps/nco_pck.Tpo -c -o nco_pck.lo nco_pck.c |
| 05-Oct-2018 15:18:10 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_pck.lo -MD -MP -MF .deps/nco_pck.Tpo -c nco_pck.c -fPIC -DPIC -o .libs/nco_pck.o |
| 05-Oct-2018 15:18:10 | In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, |
| 05-Oct-2018 15:18:10 | from /usr/include/stdio.h:27, |
| 05-Oct-2018 15:18:10 | from nco_pck.h:17, |
| 05-Oct-2018 15:18:10 | from nco_pck.c:10: |
| 05-Oct-2018 15:18:10 | /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 05-Oct-2018 15:18:10 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 05-Oct-2018 15:18:10 | ^~~~~~~ |
| 05-Oct-2018 15:18:11 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_pck.lo -MD -MP -MF .deps/nco_pck.Tpo -c nco_pck.c -o nco_pck.o >/dev/null 2>&1 |
| 05-Oct-2018 15:18:11 | mv -f .deps/nco_pck.Tpo .deps/nco_pck.Plo |
| 05-Oct-2018 15:18:11 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_ppc.lo -MD -MP -MF .deps/nco_ppc.Tpo -c -o nco_ppc.lo nco_ppc.c |
| 05-Oct-2018 15:18:11 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_ppc.lo -MD -MP -MF .deps/nco_ppc.Tpo -c nco_ppc.c -fPIC -DPIC -o .libs/nco_ppc.o |
| 05-Oct-2018 15:18:11 | In file included from /usr/include/ctype.h:25, |
| 05-Oct-2018 15:18:11 | from nco_ppc.h:17, |
| 05-Oct-2018 15:18:11 | from nco_ppc.c:13: |
| 05-Oct-2018 15:18:11 | /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 05-Oct-2018 15:18:11 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 05-Oct-2018 15:18:11 | ^~~~~~~ |
| 05-Oct-2018 15:18:12 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_ppc.lo -MD -MP -MF .deps/nco_ppc.Tpo -c nco_ppc.c -o nco_ppc.o >/dev/null 2>&1 |
| 05-Oct-2018 15:18:12 | mv -f .deps/nco_ppc.Tpo .deps/nco_ppc.Plo |
| 05-Oct-2018 15:18:12 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_prn.lo -MD -MP -MF .deps/nco_prn.Tpo -c -o nco_prn.lo nco_prn.c |
| 05-Oct-2018 15:18:12 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_prn.lo -MD -MP -MF .deps/nco_prn.Tpo -c nco_prn.c -fPIC -DPIC -o .libs/nco_prn.o |
| 05-Oct-2018 15:18:12 | In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, |
| 05-Oct-2018 15:18:12 | from /usr/include/math.h:27, |
| 05-Oct-2018 15:18:12 | from nco_prn.h:21, |
| 05-Oct-2018 15:18:12 | from nco_prn.c:11: |
| 05-Oct-2018 15:18:12 | /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 05-Oct-2018 15:18:12 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 05-Oct-2018 15:18:12 | ^~~~~~~ |
| 05-Oct-2018 15:18:14 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_prn.lo -MD -MP -MF .deps/nco_prn.Tpo -c nco_prn.c -o nco_prn.o >/dev/null 2>&1 |
| 05-Oct-2018 15:18:15 | mv -f .deps/nco_prn.Tpo .deps/nco_prn.Plo |
| 05-Oct-2018 15:18:15 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_rec_var.lo -MD -MP -MF .deps/nco_rec_var.Tpo -c -o nco_rec_var.lo nco_rec_var.c |
| 05-Oct-2018 15:18:15 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_rec_var.lo -MD -MP -MF .deps/nco_rec_var.Tpo -c nco_rec_var.c -fPIC -DPIC -o .libs/nco_rec_var.o |
| 05-Oct-2018 15:18:15 | In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, |
| 05-Oct-2018 15:18:15 | from /usr/include/stdio.h:27, |
| 05-Oct-2018 15:18:15 | from nco_rec_var.h:17, |
| 05-Oct-2018 15:18:15 | from nco_rec_var.c:10: |
| 05-Oct-2018 15:18:15 | /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 05-Oct-2018 15:18:15 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 05-Oct-2018 15:18:15 | ^~~~~~~ |
| 05-Oct-2018 15:18:15 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_rec_var.lo -MD -MP -MF .deps/nco_rec_var.Tpo -c nco_rec_var.c -o nco_rec_var.o >/dev/null 2>&1 |
| 05-Oct-2018 15:18:16 | mv -f .deps/nco_rec_var.Tpo .deps/nco_rec_var.Plo |
| 05-Oct-2018 15:18:16 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_rgr.lo -MD -MP -MF .deps/nco_rgr.Tpo -c -o nco_rgr.lo nco_rgr.c |
| 05-Oct-2018 15:18:16 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_rgr.lo -MD -MP -MF .deps/nco_rgr.Tpo -c nco_rgr.c -fPIC -DPIC -o .libs/nco_rgr.o |
| 05-Oct-2018 15:18:16 | In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, |
| 05-Oct-2018 15:18:16 | from /usr/include/limits.h:26, |
| 05-Oct-2018 15:18:16 | from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:194, |
| 05-Oct-2018 15:18:16 | from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/syslimits.h:7, |
| 05-Oct-2018 15:18:16 | from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:34, |
| 05-Oct-2018 15:18:16 | from nco_rgr.h:17, |
| 05-Oct-2018 15:18:16 | from nco_rgr.c:10: |
| 05-Oct-2018 15:18:16 | /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 05-Oct-2018 15:18:16 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 05-Oct-2018 15:18:16 | ^~~~~~~ |
| 05-Oct-2018 15:18:20 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_rgr.lo -MD -MP -MF .deps/nco_rgr.Tpo -c nco_rgr.c -o nco_rgr.o >/dev/null 2>&1 |
| 05-Oct-2018 15:18:25 | mv -f .deps/nco_rgr.Tpo .deps/nco_rgr.Plo |
| 05-Oct-2018 15:18:25 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_rth_flt.lo -MD -MP -MF .deps/nco_rth_flt.Tpo -c -o nco_rth_flt.lo nco_rth_flt.c |
| 05-Oct-2018 15:18:25 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_rth_flt.lo -MD -MP -MF .deps/nco_rth_flt.Tpo -c nco_rth_flt.c -fPIC -DPIC -o .libs/nco_rth_flt.o |
| 05-Oct-2018 15:18:25 | In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, |
| 05-Oct-2018 15:18:25 | from /usr/include/math.h:27, |
| 05-Oct-2018 15:18:25 | from nco_rth_flt.h:21, |
| 05-Oct-2018 15:18:25 | from nco_rth_flt.c:10: |
| 05-Oct-2018 15:18:25 | /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 05-Oct-2018 15:18:25 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 05-Oct-2018 15:18:25 | ^~~~~~~ |
| 05-Oct-2018 15:18:25 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_rth_flt.lo -MD -MP -MF .deps/nco_rth_flt.Tpo -c nco_rth_flt.c -o nco_rth_flt.o >/dev/null 2>&1 |
| 05-Oct-2018 15:18:25 | mv -f .deps/nco_rth_flt.Tpo .deps/nco_rth_flt.Plo |
| 05-Oct-2018 15:18:25 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_rth_utl.lo -MD -MP -MF .deps/nco_rth_utl.Tpo -c -o nco_rth_utl.lo nco_rth_utl.c |
| 05-Oct-2018 15:18:25 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_rth_utl.lo -MD -MP -MF .deps/nco_rth_utl.Tpo -c nco_rth_utl.c -fPIC -DPIC -o .libs/nco_rth_utl.o |
| 05-Oct-2018 15:18:25 | In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, |
| 05-Oct-2018 15:18:25 | from /usr/include/math.h:27, |
| 05-Oct-2018 15:18:25 | from nco_rth_utl.h:17, |
| 05-Oct-2018 15:18:25 | from nco_rth_utl.c:10: |
| 05-Oct-2018 15:18:25 | /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 05-Oct-2018 15:18:25 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 05-Oct-2018 15:18:25 | ^~~~~~~ |
| 05-Oct-2018 15:18:25 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_rth_utl.lo -MD -MP -MF .deps/nco_rth_utl.Tpo -c nco_rth_utl.c -o nco_rth_utl.o >/dev/null 2>&1 |
| 05-Oct-2018 15:18:25 | mv -f .deps/nco_rth_utl.Tpo .deps/nco_rth_utl.Plo |
| 05-Oct-2018 15:18:25 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_scl_utl.lo -MD -MP -MF .deps/nco_scl_utl.Tpo -c -o nco_scl_utl.lo nco_scl_utl.c |
| 05-Oct-2018 15:18:25 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_scl_utl.lo -MD -MP -MF .deps/nco_scl_utl.Tpo -c nco_scl_utl.c -fPIC -DPIC -o .libs/nco_scl_utl.o |
| 05-Oct-2018 15:18:26 | In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, |
| 05-Oct-2018 15:18:26 | from /usr/include/stdio.h:27, |
| 05-Oct-2018 15:18:26 | from nco_scl_utl.h:21, |
| 05-Oct-2018 15:18:26 | from nco_scl_utl.c:10: |
| 05-Oct-2018 15:18:26 | /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 05-Oct-2018 15:18:26 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 05-Oct-2018 15:18:26 | ^~~~~~~ |
| 05-Oct-2018 15:18:26 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_scl_utl.lo -MD -MP -MF .deps/nco_scl_utl.Tpo -c nco_scl_utl.c -o nco_scl_utl.o >/dev/null 2>&1 |
| 05-Oct-2018 15:18:26 | mv -f .deps/nco_scl_utl.Tpo .deps/nco_scl_utl.Plo |
| 05-Oct-2018 15:18:26 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_scm.lo -MD -MP -MF .deps/nco_scm.Tpo -c -o nco_scm.lo nco_scm.c |
| 05-Oct-2018 15:18:26 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_scm.lo -MD -MP -MF .deps/nco_scm.Tpo -c nco_scm.c -fPIC -DPIC -o .libs/nco_scm.o |
| 05-Oct-2018 15:18:26 | In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, |
| 05-Oct-2018 15:18:26 | from /usr/include/stdio.h:27, |
| 05-Oct-2018 15:18:26 | from nco_scm.h:21, |
| 05-Oct-2018 15:18:26 | from nco_scm.c:10: |
| 05-Oct-2018 15:18:26 | /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 05-Oct-2018 15:18:26 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 05-Oct-2018 15:18:26 | ^~~~~~~ |
| 05-Oct-2018 15:18:26 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_scm.lo -MD -MP -MF .deps/nco_scm.Tpo -c nco_scm.c -o nco_scm.o >/dev/null 2>&1 |
| 05-Oct-2018 15:18:26 | mv -f .deps/nco_scm.Tpo .deps/nco_scm.Plo |
| 05-Oct-2018 15:18:26 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_sld.lo -MD -MP -MF .deps/nco_sld.Tpo -c -o nco_sld.lo nco_sld.c |
| 05-Oct-2018 15:18:26 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_sld.lo -MD -MP -MF .deps/nco_sld.Tpo -c nco_sld.c -fPIC -DPIC -o .libs/nco_sld.o |
| 05-Oct-2018 15:18:26 | In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, |
| 05-Oct-2018 15:18:26 | from /usr/include/stdio.h:27, |
| 05-Oct-2018 15:18:26 | from nco_sld.h:17, |
| 05-Oct-2018 15:18:26 | from nco_sld.c:10: |
| 05-Oct-2018 15:18:26 | /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 05-Oct-2018 15:18:26 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 05-Oct-2018 15:18:26 | ^~~~~~~ |
| 05-Oct-2018 15:18:26 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_sld.lo -MD -MP -MF .deps/nco_sld.Tpo -c nco_sld.c -o nco_sld.o >/dev/null 2>&1 |
| 05-Oct-2018 15:18:27 | mv -f .deps/nco_sld.Tpo .deps/nco_sld.Plo |
| 05-Oct-2018 15:18:27 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_sng_utl.lo -MD -MP -MF .deps/nco_sng_utl.Tpo -c -o nco_sng_utl.lo nco_sng_utl.c |
| 05-Oct-2018 15:18:27 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_sng_utl.lo -MD -MP -MF .deps/nco_sng_utl.Tpo -c nco_sng_utl.c -fPIC -DPIC -o .libs/nco_sng_utl.o |
| 05-Oct-2018 15:18:27 | In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, |
| 05-Oct-2018 15:18:27 | from /usr/include/stdio.h:27, |
| 05-Oct-2018 15:18:27 | from nco_sng_utl.h:21, |
| 05-Oct-2018 15:18:27 | from nco_sng_utl.c:10: |
| 05-Oct-2018 15:18:27 | /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 05-Oct-2018 15:18:27 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 05-Oct-2018 15:18:27 | ^~~~~~~ |
| 05-Oct-2018 15:18:27 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_sng_utl.lo -MD -MP -MF .deps/nco_sng_utl.Tpo -c nco_sng_utl.c -o nco_sng_utl.o >/dev/null 2>&1 |
| 05-Oct-2018 15:18:27 | mv -f .deps/nco_sng_utl.Tpo .deps/nco_sng_utl.Plo |
| 05-Oct-2018 15:18:27 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_srm.lo -MD -MP -MF .deps/nco_srm.Tpo -c -o nco_srm.lo nco_srm.c |
| 05-Oct-2018 15:18:27 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_srm.lo -MD -MP -MF .deps/nco_srm.Tpo -c nco_srm.c -fPIC -DPIC -o .libs/nco_srm.o |
| 05-Oct-2018 15:18:27 | In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, |
| 05-Oct-2018 15:18:27 | from /usr/include/stdio.h:27, |
| 05-Oct-2018 15:18:27 | from nco_srm.h:21, |
| 05-Oct-2018 15:18:27 | from nco_srm.c:10: |
| 05-Oct-2018 15:18:27 | /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 05-Oct-2018 15:18:27 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 05-Oct-2018 15:18:27 | ^~~~~~~ |
| 05-Oct-2018 15:18:27 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_srm.lo -MD -MP -MF .deps/nco_srm.Tpo -c nco_srm.c -o nco_srm.o >/dev/null 2>&1 |
| 05-Oct-2018 15:18:27 | mv -f .deps/nco_srm.Tpo .deps/nco_srm.Plo |
| 05-Oct-2018 15:18:27 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_var_avg.lo -MD -MP -MF .deps/nco_var_avg.Tpo -c -o nco_var_avg.lo nco_var_avg.c |
| 05-Oct-2018 15:18:27 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_var_avg.lo -MD -MP -MF .deps/nco_var_avg.Tpo -c nco_var_avg.c -fPIC -DPIC -o .libs/nco_var_avg.o |
| 05-Oct-2018 15:18:27 | In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, |
| 05-Oct-2018 15:18:27 | from /usr/include/math.h:27, |
| 05-Oct-2018 15:18:27 | from nco_var_avg.h:17, |
| 05-Oct-2018 15:18:27 | from nco_var_avg.c:10: |
| 05-Oct-2018 15:18:27 | /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 05-Oct-2018 15:18:27 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 05-Oct-2018 15:18:27 | ^~~~~~~ |
| 05-Oct-2018 15:18:28 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_var_avg.lo -MD -MP -MF .deps/nco_var_avg.Tpo -c nco_var_avg.c -o nco_var_avg.o >/dev/null 2>&1 |
| 05-Oct-2018 15:18:29 | mv -f .deps/nco_var_avg.Tpo .deps/nco_var_avg.Plo |
| 05-Oct-2018 15:18:29 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_var_lst.lo -MD -MP -MF .deps/nco_var_lst.Tpo -c -o nco_var_lst.lo nco_var_lst.c |
| 05-Oct-2018 15:18:29 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_var_lst.lo -MD -MP -MF .deps/nco_var_lst.Tpo -c nco_var_lst.c -fPIC -DPIC -o .libs/nco_var_lst.o |
| 05-Oct-2018 15:18:29 | In file included from /usr/include/assert.h:35, |
| 05-Oct-2018 15:18:29 | from nco_var_lst.h:21, |
| 05-Oct-2018 15:18:29 | from nco_var_lst.c:10: |
| 05-Oct-2018 15:18:29 | /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 05-Oct-2018 15:18:29 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 05-Oct-2018 15:18:29 | ^~~~~~~ |
| 05-Oct-2018 15:18:29 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_var_lst.lo -MD -MP -MF .deps/nco_var_lst.Tpo -c nco_var_lst.c -o nco_var_lst.o >/dev/null 2>&1 |
| 05-Oct-2018 15:18:30 | mv -f .deps/nco_var_lst.Tpo .deps/nco_var_lst.Plo |
| 05-Oct-2018 15:18:30 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_var_rth.lo -MD -MP -MF .deps/nco_var_rth.Tpo -c -o nco_var_rth.lo nco_var_rth.c |
| 05-Oct-2018 15:18:30 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_var_rth.lo -MD -MP -MF .deps/nco_var_rth.Tpo -c nco_var_rth.c -fPIC -DPIC -o .libs/nco_var_rth.o |
| 05-Oct-2018 15:18:30 | In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, |
| 05-Oct-2018 15:18:30 | from /usr/include/math.h:27, |
| 05-Oct-2018 15:18:30 | from nco_var_rth.h:21, |
| 05-Oct-2018 15:18:30 | from nco_var_rth.c:10: |
| 05-Oct-2018 15:18:30 | /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 05-Oct-2018 15:18:30 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 05-Oct-2018 15:18:30 | ^~~~~~~ |
| 05-Oct-2018 15:18:31 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_var_rth.lo -MD -MP -MF .deps/nco_var_rth.Tpo -c nco_var_rth.c -o nco_var_rth.o >/dev/null 2>&1 |
| 05-Oct-2018 15:18:33 | mv -f .deps/nco_var_rth.Tpo .deps/nco_var_rth.Plo |
| 05-Oct-2018 15:18:33 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_var_scv.lo -MD -MP -MF .deps/nco_var_scv.Tpo -c -o nco_var_scv.lo nco_var_scv.c |
| 05-Oct-2018 15:18:33 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_var_scv.lo -MD -MP -MF .deps/nco_var_scv.Tpo -c nco_var_scv.c -fPIC -DPIC -o .libs/nco_var_scv.o |
| 05-Oct-2018 15:18:33 | In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, |
| 05-Oct-2018 15:18:33 | from /usr/include/math.h:27, |
| 05-Oct-2018 15:18:33 | from nco_var_scv.h:17, |
| 05-Oct-2018 15:18:33 | from nco_var_scv.c:10: |
| 05-Oct-2018 15:18:33 | /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 05-Oct-2018 15:18:33 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 05-Oct-2018 15:18:33 | ^~~~~~~ |
| 05-Oct-2018 15:18:33 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_var_scv.lo -MD -MP -MF .deps/nco_var_scv.Tpo -c nco_var_scv.c -o nco_var_scv.o >/dev/null 2>&1 |
| 05-Oct-2018 15:18:34 | mv -f .deps/nco_var_scv.Tpo .deps/nco_var_scv.Plo |
| 05-Oct-2018 15:18:34 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_var_utl.lo -MD -MP -MF .deps/nco_var_utl.Tpo -c -o nco_var_utl.lo nco_var_utl.c |
| 05-Oct-2018 15:18:34 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_var_utl.lo -MD -MP -MF .deps/nco_var_utl.Tpo -c nco_var_utl.c -fPIC -DPIC -o .libs/nco_var_utl.o |
| 05-Oct-2018 15:18:34 | In file included from /usr/include/assert.h:35, |
| 05-Oct-2018 15:18:34 | from nco_var_utl.h:21, |
| 05-Oct-2018 15:18:34 | from nco_var_utl.c:10: |
| 05-Oct-2018 15:18:34 | /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 05-Oct-2018 15:18:34 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 05-Oct-2018 15:18:34 | ^~~~~~~ |
| 05-Oct-2018 15:18:34 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_var_utl.lo -MD -MP -MF .deps/nco_var_utl.Tpo -c nco_var_utl.c -o nco_var_utl.o >/dev/null 2>&1 |
| 05-Oct-2018 15:18:35 | mv -f .deps/nco_var_utl.Tpo .deps/nco_var_utl.Plo |
| 05-Oct-2018 15:18:35 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=link gcc -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -release 4.6.7 -L/srv/sw/netcdf-4.4.1/lib -lnetcdf -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu -o libnco.la -rpath /srv/sw/nco-4.6.7/lib nco_att_utl.lo nco_aux.lo nco_bnr.lo nco_cln_utl.lo nco_cnf_dmn.lo nco_cnf_typ.lo nco_cnk.lo nco_cnv_arm.lo nco_cnv_csm.lo nco_ctl.lo nco_dbg.lo nco_dmn_utl.lo nco_fl_utl.lo nco_grp_utl.lo nco_grp_trv.lo nco_lmt.lo nco_lst_utl.lo nco_md5.lo nco_mmr.lo nco_msa.lo nco_mss_val.lo nco_mta.lo nco_netcdf.lo nco_omp.lo nco_pck.lo nco_ppc.lo nco_prn.lo nco_rec_var.lo nco_rgr.lo nco_rth_flt.lo nco_rth_utl.lo nco_scl_utl.lo nco_scm.lo nco_sld.lo nco_sng_utl.lo nco_srm.lo nco_var_avg.lo nco_var_lst.lo nco_var_rth.lo nco_var_scv.lo nco_var_utl.lo -ludunits2 -lexpat -lm -lnetcdf -lnetcdf -ludunits2 |
| 05-Oct-2018 15:18:35 | libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/8/crtbeginS.o .libs/nco_att_utl.o .libs/nco_aux.o .libs/nco_bnr.o .libs/nco_cln_utl.o .libs/nco_cnf_dmn.o .libs/nco_cnf_typ.o .libs/nco_cnk.o .libs/nco_cnv_arm.o .libs/nco_cnv_csm.o .libs/nco_ctl.o .libs/nco_dbg.o .libs/nco_dmn_utl.o .libs/nco_fl_utl.o .libs/nco_grp_utl.o .libs/nco_grp_trv.o .libs/nco_lmt.o .libs/nco_lst_utl.o .libs/nco_md5.o .libs/nco_mmr.o .libs/nco_msa.o .libs/nco_mss_val.o .libs/nco_mta.o .libs/nco_netcdf.o .libs/nco_omp.o .libs/nco_pck.o .libs/nco_ppc.o .libs/nco_prn.o .libs/nco_rec_var.o .libs/nco_rgr.o .libs/nco_rth_flt.o .libs/nco_rth_utl.o .libs/nco_scl_utl.o .libs/nco_scm.o .libs/nco_sld.o .libs/nco_sng_utl.o .libs/nco_srm.o .libs/nco_var_avg.o .libs/nco_var_lst.o .libs/nco_var_rth.o .libs/nco_var_scv.o .libs/nco_var_utl.o -Wl,-rpath -Wl,/srv/sw/netcdf-4.4.1/lib -Wl,-rpath -Wl,/srv/sw/netcdf-4.4.1/lib -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu -lexpat /srv/sw/netcdf-4.4.1/lib/libnetcdf.so -ludunits2 -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/8/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu/crtn.o -O2 -fopenmp -fopenmp -Wl,-soname -Wl,libnco-4.6.7.so -o .libs/libnco-4.6.7.so |
| 05-Oct-2018 15:18:35 | libtool: link: (cd ".libs" && rm -f "libnco.so" && ln -s "libnco-4.6.7.so" "libnco.so") |
| 05-Oct-2018 15:18:35 | libtool: link: ar cru .libs/libnco.a nco_att_utl.o nco_aux.o nco_bnr.o nco_cln_utl.o nco_cnf_dmn.o nco_cnf_typ.o nco_cnk.o nco_cnv_arm.o nco_cnv_csm.o nco_ctl.o nco_dbg.o nco_dmn_utl.o nco_fl_utl.o nco_grp_utl.o nco_grp_trv.o nco_lmt.o nco_lst_utl.o nco_md5.o nco_mmr.o nco_msa.o nco_mss_val.o nco_mta.o nco_netcdf.o nco_omp.o nco_pck.o nco_ppc.o nco_prn.o nco_rec_var.o nco_rgr.o nco_rth_flt.o nco_rth_utl.o nco_scl_utl.o nco_scm.o nco_sld.o nco_sng_utl.o nco_srm.o nco_var_avg.o nco_var_lst.o nco_var_rth.o nco_var_scv.o nco_var_utl.o |
| 05-Oct-2018 15:18:35 | ar: `u' modifier ignored since `D' is the default (see `U') |
| 05-Oct-2018 15:18:35 | libtool: link: ranlib .libs/libnco.a |
| 05-Oct-2018 15:18:36 | libtool: link: ( cd ".libs" && rm -f "libnco.la" && ln -s "../libnco.la" "libnco.la" ) |
| 05-Oct-2018 15:18:36 | gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT ncap_utl.o -MD -MP -MF .deps/ncap_utl.Tpo -c -o ncap_utl.o ncap_utl.c |
| 05-Oct-2018 15:18:36 | In file included from /usr/include/assert.h:35, |
| 05-Oct-2018 15:18:36 | from ncap_utl.c:10: |
| 05-Oct-2018 15:18:36 | /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 05-Oct-2018 15:18:36 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 05-Oct-2018 15:18:36 | ^~~~~~~ |
| 05-Oct-2018 15:18:36 | mv -f .deps/ncap_utl.Tpo .deps/ncap_utl.Po |
| 05-Oct-2018 15:18:36 | gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT ncap.o -MD -MP -MF .deps/ncap.Tpo -c -o ncap.o ncap.c |
| 05-Oct-2018 15:18:36 | In file included from /usr/include/assert.h:35, |
| 05-Oct-2018 15:18:36 | from ncap.c:41: |
| 05-Oct-2018 15:18:36 | /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 05-Oct-2018 15:18:36 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 05-Oct-2018 15:18:36 | ^~~~~~~ |
| 05-Oct-2018 15:18:36 | mv -f .deps/ncap.Tpo .deps/ncap.Po |
| 05-Oct-2018 15:18:36 | gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT ncap_yacc.o -MD -MP -MF .deps/ncap_yacc.Tpo -c -o ncap_yacc.o ncap_yacc.c |
| 05-Oct-2018 15:18:36 | In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, |
| 05-Oct-2018 15:18:36 | from /usr/include/math.h:27, |
| 05-Oct-2018 15:18:36 | from ncap_yacc.y:41: |
| 05-Oct-2018 15:18:36 | /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 05-Oct-2018 15:18:36 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 05-Oct-2018 15:18:36 | ^~~~~~~ |
| 05-Oct-2018 15:18:37 | mv -f .deps/ncap_yacc.Tpo .deps/ncap_yacc.Po |
| 05-Oct-2018 15:18:37 | test -f ncap_lex.c || /bin/bash ../../autobld/ylwrap ncap_lex.l lex.nco_yy.c ncap_lex.c -- flex -Pnco_yy |
| 05-Oct-2018 15:18:37 | gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT ncap_lex.o -MD -MP -MF .deps/ncap_lex.Tpo -c -o ncap_lex.o ncap_lex.c |
| 05-Oct-2018 15:18:37 | In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, |
| 05-Oct-2018 15:18:37 | from /usr/include/stdio.h:27, |
| 05-Oct-2018 15:18:37 | from ncap_lex.c:278: |
| 05-Oct-2018 15:18:37 | /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 05-Oct-2018 15:18:37 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 05-Oct-2018 15:18:37 | ^~~~~~~ |
| 05-Oct-2018 15:18:37 | mv -f .deps/ncap_lex.Tpo .deps/ncap_lex.Po |
| 05-Oct-2018 15:18:38 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=link gcc -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -L/srv/sw/netcdf-4.4.1/lib -lnetcdf -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu -o ncap ncap_utl.o ncap.o ncap_yacc.o ncap_lex.o libnco.la -ludunits2 -lexpat -lm -lnetcdf -lnetcdf -ludunits2 |
| 05-Oct-2018 15:18:38 | libtool: link: gcc -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -o .libs/ncap ncap_utl.o ncap.o ncap_yacc.o ncap_lex.o -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu ./.libs/libnco.so -lexpat -lm /srv/sw/netcdf-4.4.1/lib/libnetcdf.so -ludunits2 -fopenmp -Wl,-rpath -Wl,/srv/sw/nco-4.6.7/lib -Wl,-rpath -Wl,/srv/sw/netcdf-4.4.1/lib |
| 05-Oct-2018 15:18:38 | gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT ncatted.o -MD -MP -MF .deps/ncatted.Tpo -c -o ncatted.o ncatted.c |
| 05-Oct-2018 15:18:38 | In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, |
| 05-Oct-2018 15:18:38 | from /usr/include/math.h:27, |
| 05-Oct-2018 15:18:38 | from ncatted.c:104: |
| 05-Oct-2018 15:18:38 | /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 05-Oct-2018 15:18:38 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 05-Oct-2018 15:18:38 | ^~~~~~~ |
| 05-Oct-2018 15:18:38 | mv -f .deps/ncatted.Tpo .deps/ncatted.Po |
| 05-Oct-2018 15:18:38 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=link gcc -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -L/srv/sw/netcdf-4.4.1/lib -lnetcdf -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu -o ncatted ncatted.o libnco.la -ludunits2 -lexpat -lm -lnetcdf -lnetcdf -ludunits2 |
| 05-Oct-2018 15:18:38 | libtool: link: gcc -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -o .libs/ncatted ncatted.o -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu ./.libs/libnco.so -lexpat -lm /srv/sw/netcdf-4.4.1/lib/libnetcdf.so -ludunits2 -fopenmp -Wl,-rpath -Wl,/srv/sw/nco-4.6.7/lib -Wl,-rpath -Wl,/srv/sw/netcdf-4.4.1/lib |
| 05-Oct-2018 15:18:38 | gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT ncbo.o -MD -MP -MF .deps/ncbo.Tpo -c -o ncbo.o ncbo.c |
| 05-Oct-2018 15:18:38 | In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, |
| 05-Oct-2018 15:18:38 | from /usr/include/math.h:27, |
| 05-Oct-2018 15:18:38 | from ncbo.c:58: |
| 05-Oct-2018 15:18:38 | /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 05-Oct-2018 15:18:38 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 05-Oct-2018 15:18:38 | ^~~~~~~ |
| 05-Oct-2018 15:18:39 | mv -f .deps/ncbo.Tpo .deps/ncbo.Po |
| 05-Oct-2018 15:18:39 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=link gcc -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -L/srv/sw/netcdf-4.4.1/lib -lnetcdf -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu -o ncbo ncbo.o libnco.la -ludunits2 -lexpat -lm -lnetcdf -lnetcdf -ludunits2 |
| 05-Oct-2018 15:18:39 | libtool: link: gcc -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -o .libs/ncbo ncbo.o -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu ./.libs/libnco.so -lexpat -lm /srv/sw/netcdf-4.4.1/lib/libnetcdf.so -ludunits2 -fopenmp -Wl,-rpath -Wl,/srv/sw/nco-4.6.7/lib -Wl,-rpath -Wl,/srv/sw/netcdf-4.4.1/lib |
| 05-Oct-2018 15:18:39 | gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT ncecat.o -MD -MP -MF .deps/ncecat.Tpo -c -o ncecat.o ncecat.c |
| 05-Oct-2018 15:18:39 | In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, |
| 05-Oct-2018 15:18:39 | from /usr/include/math.h:27, |
| 05-Oct-2018 15:18:39 | from ncecat.c:46: |
| 05-Oct-2018 15:18:39 | /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 05-Oct-2018 15:18:39 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 05-Oct-2018 15:18:39 | ^~~~~~~ |
| 05-Oct-2018 15:18:39 | ncecat.c: In function ‘main’: |
| 05-Oct-2018 15:18:39 | ncecat.c:802:17: warning: ‘strncpy’ specified bound depends on the length of the source argument [-Wstringop-overflow=] |
| 05-Oct-2018 15:18:39 | gpe_arg=strncpy(gpe_arg,stb_srt_psn,strlen(stb_srt_psn)-sfx_lng); |
| 05-Oct-2018 15:18:39 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ |
| 05-Oct-2018 15:18:39 | ncecat.c:802:45: note: length computed here |
| 05-Oct-2018 15:18:39 | gpe_arg=strncpy(gpe_arg,stb_srt_psn,strlen(stb_srt_psn)-sfx_lng); |
| 05-Oct-2018 15:18:39 | ^~~~~~~~~~~~~~~~~~~ |
| 05-Oct-2018 15:18:39 | mv -f .deps/ncecat.Tpo .deps/ncecat.Po |
| 05-Oct-2018 15:18:39 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=link gcc -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -L/srv/sw/netcdf-4.4.1/lib -lnetcdf -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu -o ncecat ncecat.o libnco.la -ludunits2 -lexpat -lm -lnetcdf -lnetcdf -ludunits2 |
| 05-Oct-2018 15:18:39 | libtool: link: gcc -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -o .libs/ncecat ncecat.o -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu ./.libs/libnco.so -lexpat -lm /srv/sw/netcdf-4.4.1/lib/libnetcdf.so -ludunits2 -fopenmp -Wl,-rpath -Wl,/srv/sw/nco-4.6.7/lib -Wl,-rpath -Wl,/srv/sw/netcdf-4.4.1/lib |
| 05-Oct-2018 15:18:39 | gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT ncflint.o -MD -MP -MF .deps/ncflint.Tpo -c -o ncflint.o ncflint.c |
| 05-Oct-2018 15:18:39 | In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, |
| 05-Oct-2018 15:18:39 | from /usr/include/math.h:27, |
| 05-Oct-2018 15:18:39 | from ncflint.c:43: |
| 05-Oct-2018 15:18:39 | /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 05-Oct-2018 15:18:39 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 05-Oct-2018 15:18:39 | ^~~~~~~ |
| 05-Oct-2018 15:18:40 | mv -f .deps/ncflint.Tpo .deps/ncflint.Po |
| 05-Oct-2018 15:18:40 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=link gcc -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -L/srv/sw/netcdf-4.4.1/lib -lnetcdf -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu -o ncflint ncflint.o libnco.la -ludunits2 -lexpat -lm -lnetcdf -lnetcdf -ludunits2 |
| 05-Oct-2018 15:18:40 | libtool: link: gcc -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -o .libs/ncflint ncflint.o -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu ./.libs/libnco.so -lexpat -lm /srv/sw/netcdf-4.4.1/lib/libnetcdf.so -ludunits2 -fopenmp -Wl,-rpath -Wl,/srv/sw/nco-4.6.7/lib -Wl,-rpath -Wl,/srv/sw/netcdf-4.4.1/lib |
| 05-Oct-2018 15:18:40 | gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT ncks.o -MD -MP -MF .deps/ncks.Tpo -c -o ncks.o ncks.c |
| 05-Oct-2018 15:18:40 | In file included from /usr/include/assert.h:35, |
| 05-Oct-2018 15:18:40 | from ncks.c:67: |
| 05-Oct-2018 15:18:40 | /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 05-Oct-2018 15:18:40 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 05-Oct-2018 15:18:40 | ^~~~~~~ |
| 05-Oct-2018 15:18:41 | mv -f .deps/ncks.Tpo .deps/ncks.Po |
| 05-Oct-2018 15:18:41 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=link gcc -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -L/srv/sw/netcdf-4.4.1/lib -lnetcdf -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu -o ncks ncks.o libnco.la -ludunits2 -lexpat -lm -lnetcdf -lnetcdf -ludunits2 |
| 05-Oct-2018 15:18:41 | libtool: link: gcc -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -o .libs/ncks ncks.o -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu ./.libs/libnco.so -lexpat -lm /srv/sw/netcdf-4.4.1/lib/libnetcdf.so -ludunits2 -fopenmp -Wl,-rpath -Wl,/srv/sw/nco-4.6.7/lib -Wl,-rpath -Wl,/srv/sw/netcdf-4.4.1/lib |
| 05-Oct-2018 15:18:41 | gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT ncpdq.o -MD -MP -MF .deps/ncpdq.Tpo -c -o ncpdq.o ncpdq.c |
| 05-Oct-2018 15:18:41 | In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, |
| 05-Oct-2018 15:18:41 | from /usr/include/math.h:27, |
| 05-Oct-2018 15:18:41 | from ncpdq.c:46: |
| 05-Oct-2018 15:18:41 | /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 05-Oct-2018 15:18:41 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 05-Oct-2018 15:18:41 | ^~~~~~~ |
| 05-Oct-2018 15:18:42 | mv -f .deps/ncpdq.Tpo .deps/ncpdq.Po |
| 05-Oct-2018 15:18:42 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=link gcc -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -L/srv/sw/netcdf-4.4.1/lib -lnetcdf -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu -o ncpdq ncpdq.o libnco.la -ludunits2 -lexpat -lm -lnetcdf -lnetcdf -ludunits2 |
| 05-Oct-2018 15:18:42 | libtool: link: gcc -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -o .libs/ncpdq ncpdq.o -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu ./.libs/libnco.so -lexpat -lm /srv/sw/netcdf-4.4.1/lib/libnetcdf.so -ludunits2 -fopenmp -Wl,-rpath -Wl,/srv/sw/nco-4.6.7/lib -Wl,-rpath -Wl,/srv/sw/netcdf-4.4.1/lib |
| 05-Oct-2018 15:18:42 | gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT ncra.o -MD -MP -MF .deps/ncra.Tpo -c -o ncra.o ncra.c |
| 05-Oct-2018 15:18:42 | In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, |
| 05-Oct-2018 15:18:42 | from /usr/include/math.h:27, |
| 05-Oct-2018 15:18:42 | from ncra.c:62: |
| 05-Oct-2018 15:18:42 | /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 05-Oct-2018 15:18:42 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 05-Oct-2018 15:18:42 | ^~~~~~~ |
| 05-Oct-2018 15:18:43 | mv -f .deps/ncra.Tpo .deps/ncra.Po |
| 05-Oct-2018 15:18:43 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=link gcc -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -L/srv/sw/netcdf-4.4.1/lib -lnetcdf -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu -o ncra ncra.o libnco.la -ludunits2 -lexpat -lm -lnetcdf -lnetcdf -ludunits2 |
| 05-Oct-2018 15:18:43 | libtool: link: gcc -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -o .libs/ncra ncra.o -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu ./.libs/libnco.so -lexpat -lm /srv/sw/netcdf-4.4.1/lib/libnetcdf.so -ludunits2 -fopenmp -Wl,-rpath -Wl,/srv/sw/nco-4.6.7/lib -Wl,-rpath -Wl,/srv/sw/netcdf-4.4.1/lib |
| 05-Oct-2018 15:18:43 | gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT ncrename.o -MD -MP -MF .deps/ncrename.Tpo -c -o ncrename.o ncrename.c |
| 05-Oct-2018 15:18:43 | In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, |
| 05-Oct-2018 15:18:43 | from /usr/include/math.h:27, |
| 05-Oct-2018 15:18:43 | from ncrename.c:42: |
| 05-Oct-2018 15:18:43 | /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 05-Oct-2018 15:18:43 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 05-Oct-2018 15:18:43 | ^~~~~~~ |
| 05-Oct-2018 15:18:43 | mv -f .deps/ncrename.Tpo .deps/ncrename.Po |
| 05-Oct-2018 15:18:43 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=link gcc -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -L/srv/sw/netcdf-4.4.1/lib -lnetcdf -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu -o ncrename ncrename.o libnco.la -ludunits2 -lexpat -lm -lnetcdf -lnetcdf -ludunits2 |
| 05-Oct-2018 15:18:43 | libtool: link: gcc -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -o .libs/ncrename ncrename.o -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu ./.libs/libnco.so -lexpat -lm /srv/sw/netcdf-4.4.1/lib/libnetcdf.so -ludunits2 -fopenmp -Wl,-rpath -Wl,/srv/sw/nco-4.6.7/lib -Wl,-rpath -Wl,/srv/sw/netcdf-4.4.1/lib |
| 05-Oct-2018 15:18:44 | gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT ncwa.o -MD -MP -MF .deps/ncwa.Tpo -c -o ncwa.o ncwa.c |
| 05-Oct-2018 15:18:44 | In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, |
| 05-Oct-2018 15:18:44 | from /usr/include/math.h:27, |
| 05-Oct-2018 15:18:44 | from ncwa.c:44: |
| 05-Oct-2018 15:18:44 | /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 05-Oct-2018 15:18:44 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 05-Oct-2018 15:18:44 | ^~~~~~~ |
| 05-Oct-2018 15:18:44 | mv -f .deps/ncwa.Tpo .deps/ncwa.Po |
| 05-Oct-2018 15:18:44 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=link gcc -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -L/srv/sw/netcdf-4.4.1/lib -lnetcdf -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu -o ncwa ncwa.o ncap_utl.o ncap_lex.o ncap_yacc.o libnco.la -ludunits2 -lexpat -lm -lnetcdf -lnetcdf -ludunits2 |
| 05-Oct-2018 15:18:44 | libtool: link: gcc -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -o .libs/ncwa ncwa.o ncap_utl.o ncap_lex.o ncap_yacc.o -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu ./.libs/libnco.so -lexpat -lm /srv/sw/netcdf-4.4.1/lib/libnetcdf.so -ludunits2 -fopenmp -Wl,-rpath -Wl,/srv/sw/nco-4.6.7/lib -Wl,-rpath -Wl,/srv/sw/netcdf-4.4.1/lib |
| 05-Oct-2018 15:18:44 | make[4]: Leaving directory '/srv/downloads/nco-4.6.7/src/nco' |
| 05-Oct-2018 15:18:44 | make[3]: Leaving directory '/srv/downloads/nco-4.6.7/src/nco' |
| 05-Oct-2018 15:18:44 | Making all in nco_c++ |
| 05-Oct-2018 15:18:44 | make[3]: Entering directory '/srv/downloads/nco-4.6.7/src/nco_c++' |
| 05-Oct-2018 15:18:44 | /bin/bash ../../libtool --tag=CXX --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT libnco_c___la-nco_att.lo -MD -MP -MF .deps/libnco_c___la-nco_att.Tpo -c -o libnco_c___la-nco_att.lo `test -f 'nco_att.cc' || echo './'`nco_att.cc |
| 05-Oct-2018 15:18:44 | libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT libnco_c___la-nco_att.lo -MD -MP -MF .deps/libnco_c___la-nco_att.Tpo -c nco_att.cc -fPIC -DPIC -o .libs/libnco_c___la-nco_att.o |
| 05-Oct-2018 15:18:45 | libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT libnco_c___la-nco_att.lo -MD -MP -MF .deps/libnco_c___la-nco_att.Tpo -c nco_att.cc -o libnco_c___la-nco_att.o >/dev/null 2>&1 |
| 05-Oct-2018 15:18:46 | mv -f .deps/libnco_c___la-nco_att.Tpo .deps/libnco_c___la-nco_att.Plo |
| 05-Oct-2018 15:18:46 | /bin/bash ../../libtool --tag=CXX --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT libnco_c___la-nco_dmn.lo -MD -MP -MF .deps/libnco_c___la-nco_dmn.Tpo -c -o libnco_c___la-nco_dmn.lo `test -f 'nco_dmn.cc' || echo './'`nco_dmn.cc |
| 05-Oct-2018 15:18:46 | libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT libnco_c___la-nco_dmn.lo -MD -MP -MF .deps/libnco_c___la-nco_dmn.Tpo -c nco_dmn.cc -fPIC -DPIC -o .libs/libnco_c___la-nco_dmn.o |
| 05-Oct-2018 15:18:47 | libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT libnco_c___la-nco_dmn.lo -MD -MP -MF .deps/libnco_c___la-nco_dmn.Tpo -c nco_dmn.cc -o libnco_c___la-nco_dmn.o >/dev/null 2>&1 |
| 05-Oct-2018 15:18:47 | mv -f .deps/libnco_c___la-nco_dmn.Tpo .deps/libnco_c___la-nco_dmn.Plo |
| 05-Oct-2018 15:18:47 | /bin/bash ../../libtool --tag=CXX --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT libnco_c___la-nco_fl.lo -MD -MP -MF .deps/libnco_c___la-nco_fl.Tpo -c -o libnco_c___la-nco_fl.lo `test -f 'nco_fl.cc' || echo './'`nco_fl.cc |
| 05-Oct-2018 15:18:47 | libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT libnco_c___la-nco_fl.lo -MD -MP -MF .deps/libnco_c___la-nco_fl.Tpo -c nco_fl.cc -fPIC -DPIC -o .libs/libnco_c___la-nco_fl.o |
| 05-Oct-2018 15:18:48 | libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT libnco_c___la-nco_fl.lo -MD -MP -MF .deps/libnco_c___la-nco_fl.Tpo -c nco_fl.cc -o libnco_c___la-nco_fl.o >/dev/null 2>&1 |
| 05-Oct-2018 15:18:49 | mv -f .deps/libnco_c___la-nco_fl.Tpo .deps/libnco_c___la-nco_fl.Plo |
| 05-Oct-2018 15:18:49 | /bin/bash ../../libtool --tag=CXX --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT libnco_c___la-nco_hgh.lo -MD -MP -MF .deps/libnco_c___la-nco_hgh.Tpo -c -o libnco_c___la-nco_hgh.lo `test -f 'nco_hgh.cc' || echo './'`nco_hgh.cc |
| 05-Oct-2018 15:18:49 | libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT libnco_c___la-nco_hgh.lo -MD -MP -MF .deps/libnco_c___la-nco_hgh.Tpo -c nco_hgh.cc -fPIC -DPIC -o .libs/libnco_c___la-nco_hgh.o |
| 05-Oct-2018 15:18:49 | libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT libnco_c___la-nco_hgh.lo -MD -MP -MF .deps/libnco_c___la-nco_hgh.Tpo -c nco_hgh.cc -o libnco_c___la-nco_hgh.o >/dev/null 2>&1 |
| 05-Oct-2018 15:18:50 | mv -f .deps/libnco_c___la-nco_hgh.Tpo .deps/libnco_c___la-nco_hgh.Plo |
| 05-Oct-2018 15:18:50 | /bin/bash ../../libtool --tag=CXX --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT libnco_c___la-nco_utl.lo -MD -MP -MF .deps/libnco_c___la-nco_utl.Tpo -c -o libnco_c___la-nco_utl.lo `test -f 'nco_utl.cc' || echo './'`nco_utl.cc |
| 05-Oct-2018 15:18:50 | libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT libnco_c___la-nco_utl.lo -MD -MP -MF .deps/libnco_c___la-nco_utl.Tpo -c nco_utl.cc -fPIC -DPIC -o .libs/libnco_c___la-nco_utl.o |
| 05-Oct-2018 15:18:50 | libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT libnco_c___la-nco_utl.lo -MD -MP -MF .deps/libnco_c___la-nco_utl.Tpo -c nco_utl.cc -o libnco_c___la-nco_utl.o >/dev/null 2>&1 |
| 05-Oct-2018 15:18:51 | mv -f .deps/libnco_c___la-nco_utl.Tpo .deps/libnco_c___la-nco_utl.Plo |
| 05-Oct-2018 15:18:51 | /bin/bash ../../libtool --tag=CXX --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT libnco_c___la-nco_var.lo -MD -MP -MF .deps/libnco_c___la-nco_var.Tpo -c -o libnco_c___la-nco_var.lo `test -f 'nco_var.cc' || echo './'`nco_var.cc |
| 05-Oct-2018 15:18:51 | libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT libnco_c___la-nco_var.lo -MD -MP -MF .deps/libnco_c___la-nco_var.Tpo -c nco_var.cc -fPIC -DPIC -o .libs/libnco_c___la-nco_var.o |
| 05-Oct-2018 15:18:54 | libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT libnco_c___la-nco_var.lo -MD -MP -MF .deps/libnco_c___la-nco_var.Tpo -c nco_var.cc -o libnco_c___la-nco_var.o >/dev/null 2>&1 |
| 05-Oct-2018 15:18:56 | mv -f .deps/libnco_c___la-nco_var.Tpo .deps/libnco_c___la-nco_var.Plo |
| 05-Oct-2018 15:18:56 | /bin/bash ../../libtool --tag=CXX --tag=CXX --mode=link g++ -g -O2 -release 4.6.7 -L/srv/sw/netcdf-4.4.1/lib -lnetcdf -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu -o libnco_c++.la -rpath /srv/sw/nco-4.6.7/lib libnco_c___la-nco_att.lo libnco_c___la-nco_dmn.lo libnco_c___la-nco_fl.lo libnco_c___la-nco_hgh.lo libnco_c___la-nco_utl.lo libnco_c___la-nco_var.lo -ludunits2 -lexpat -lm -lnetcdf -lnetcdf -ludunits2 |
| 05-Oct-2018 15:18:56 | libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/8/crtbeginS.o .libs/libnco_c___la-nco_att.o .libs/libnco_c___la-nco_dmn.o .libs/libnco_c___la-nco_fl.o .libs/libnco_c___la-nco_hgh.o .libs/libnco_c___la-nco_utl.o .libs/libnco_c___la-nco_var.o -Wl,-rpath -Wl,/srv/sw/netcdf-4.4.1/lib -Wl,-rpath -Wl,/srv/sw/netcdf-4.4.1/lib -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu -lexpat /srv/sw/netcdf-4.4.1/lib/libnetcdf.so -ludunits2 -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/8/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu/crtn.o -O2 -Wl,-soname -Wl,libnco_c++-4.6.7.so -o .libs/libnco_c++-4.6.7.so |
| 05-Oct-2018 15:18:56 | libtool: link: (cd ".libs" && rm -f "libnco_c++.so" && ln -s "libnco_c++-4.6.7.so" "libnco_c++.so") |
| 05-Oct-2018 15:18:56 | libtool: link: ar cru .libs/libnco_c++.a libnco_c___la-nco_att.o libnco_c___la-nco_dmn.o libnco_c___la-nco_fl.o libnco_c___la-nco_hgh.o libnco_c___la-nco_utl.o libnco_c___la-nco_var.o |
| 05-Oct-2018 15:18:56 | ar: `u' modifier ignored since `D' is the default (see `U') |
| 05-Oct-2018 15:18:56 | libtool: link: ranlib .libs/libnco_c++.a |
| 05-Oct-2018 15:18:56 | libtool: link: ( cd ".libs" && rm -f "libnco_c++.la" && ln -s "../libnco_c++.la" "libnco_c++.la" ) |
| 05-Oct-2018 15:18:56 | make[3]: Leaving directory '/srv/downloads/nco-4.6.7/src/nco_c++' |
| 05-Oct-2018 15:18:56 | Making all in nco++ |
| 05-Oct-2018 15:18:56 | make[3]: Entering directory '/srv/downloads/nco-4.6.7/src/nco++' |
| 05-Oct-2018 15:18:56 | g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT Invoke.o -MD -MP -MF .deps/Invoke.Tpo -c -o Invoke.o Invoke.cc |
| 05-Oct-2018 15:18:59 | mv -f .deps/Invoke.Tpo .deps/Invoke.Po |
| 05-Oct-2018 15:18:59 | g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT ncap2.o -MD -MP -MF .deps/ncap2.Tpo -c -o ncap2.o ncap2.cc |
| 05-Oct-2018 15:19:02 | mv -f .deps/ncap2.Tpo .deps/ncap2.Po |
| 05-Oct-2018 15:19:02 | g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT ncap2_utl.o -MD -MP -MF .deps/ncap2_utl.Tpo -c -o ncap2_utl.o ncap2_utl.cc |
| 05-Oct-2018 15:19:12 | mv -f .deps/ncap2_utl.Tpo .deps/ncap2_utl.Po |
| 05-Oct-2018 15:19:12 | g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT ncap2_att.o -MD -MP -MF .deps/ncap2_att.Tpo -c -o ncap2_att.o ncap2_att.cc |
| 05-Oct-2018 15:19:14 | mv -f .deps/ncap2_att.Tpo .deps/ncap2_att.Po |
| 05-Oct-2018 15:19:14 | g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT sdo_utl.o -MD -MP -MF .deps/sdo_utl.Tpo -c -o sdo_utl.o sdo_utl.cc |
| 05-Oct-2018 15:19:14 | mv -f .deps/sdo_utl.Tpo .deps/sdo_utl.Po |
| 05-Oct-2018 15:19:14 | g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT sym_cls.o -MD -MP -MF .deps/sym_cls.Tpo -c -o sym_cls.o sym_cls.cc |
| 05-Oct-2018 15:19:14 | mv -f .deps/sym_cls.Tpo .deps/sym_cls.Po |
| 05-Oct-2018 15:19:14 | g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT fmc_cls.o -MD -MP -MF .deps/fmc_cls.Tpo -c -o fmc_cls.o fmc_cls.cc |
| 05-Oct-2018 15:19:15 | mv -f .deps/fmc_cls.Tpo .deps/fmc_cls.Po |
| 05-Oct-2018 15:19:15 | g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT fmc_all_cls.o -MD -MP -MF .deps/fmc_all_cls.Tpo -c -o fmc_all_cls.o fmc_all_cls.cc |
| 05-Oct-2018 15:19:16 | fmc_all_cls.cc: In member function ‘var_sct* vlist_cls::atoi_fnd(bool&, std::vector<antlr::ASTRefCount<antlr::AST> >&, fmc_cls&, ncoTree&)’: |
| 05-Oct-2018 15:19:16 | fmc_all_cls.cc:4799:21: error: invalid conversion from ‘char’ to ‘char*’ [-fpermissive] |
| 05-Oct-2018 15:19:16 | char *pend='\0'; |
| 05-Oct-2018 15:19:16 | ^~~~ |
| 05-Oct-2018 15:19:16 | fmc_all_cls.cc:4820:21: error: invalid conversion from ‘char’ to ‘char*’ [-fpermissive] |
| 05-Oct-2018 15:19:16 | char *pend='\0'; |
| 05-Oct-2018 15:19:16 | ^~~~ |
| 05-Oct-2018 15:19:16 | make[3]: Leaving directory '/srv/downloads/nco-4.6.7/src/nco++' |
| 05-Oct-2018 15:19:16 | make[3]: *** [Makefile:546: fmc_all_cls.o] Error 1 |
| 05-Oct-2018 15:19:16 | make[2]: *** [Makefile:383: all-recursive] Error 1 |
| 05-Oct-2018 15:19:16 | make[2]: Leaving directory '/srv/downloads/nco-4.6.7/src' |
| 05-Oct-2018 15:19:16 | make[1]: Leaving directory '/srv/downloads/nco-4.6.7' |
| 05-Oct-2018 15:19:16 | make[1]: *** [Makefile:445: all-recursive] Error 1 |
| 05-Oct-2018 15:19:16 | make: *** [Makefile:377: all] Error 2 |
| 05-Oct-2018 15:19:17 | The command '/bin/sh -c cd /srv/downloads && wget -q https://github.com/nco/nco/archive/4.6.7.tar.gz -O nco-4.6.7.tar.gz && tar xfz nco-4.6.7.tar.gz && cd nco-4.6.7 && ./configure NETCDF_ROOT=/srv/sw/netcdf-4.4.1 --prefix=/srv/sw/nco-4.6.7 --enable-ncap2 --enable-udunits2 && make && make install' returned a non-zero code: 2 |
| 05-Oct-2018 15:19:17 | docker.sh: 55: exit: Illegal number: -1 |
| 05-Oct-2018 15:19:17 | FAILED build of ./Dockerfile |
| 05-Oct-2018 15:19:17 | Failing task since return code of [/bin/sh docker.sh] was 2 while expected 0 |
| 05-Oct-2018 15:19:17 | Finished task 'docker build' with result: Failed |
| 05-Oct-2018 15:19:17 | Running post build plugin 'Docker Container Cleanup' |
| 05-Oct-2018 15:19:17 | Running post build plugin 'NCover Results Collector' |
| 05-Oct-2018 15:19:17 | Running post build plugin 'Clover Results Collector' |
| 05-Oct-2018 15:19:17 | Running post build plugin 'npm Cache Cleanup' |
| 05-Oct-2018 15:19:17 | Running post build plugin 'Artifact Copier' |
| 05-Oct-2018 15:19:17 | Finalising the build... |
| 05-Oct-2018 15:19:17 | Stopping timer. |
| 05-Oct-2018 15:19:17 | Build POL-HYPERSPECTRAL-JOB1-11 completed. |
| 05-Oct-2018 15:19:17 | Running on server: post build plugin 'NCover Results Collector' |
| 05-Oct-2018 15:19:17 | Running on server: post build plugin 'Build Hanging Detection Configuration' |
| 05-Oct-2018 15:19:17 | Running on server: post build plugin 'Clover Delta Calculator' |
| 05-Oct-2018 15:19:17 | Running on server: post build plugin 'Maven Dependencies Postprocessor' |
| 05-Oct-2018 15:19:17 | All post build plugins have finished |
| 05-Oct-2018 15:19:17 | Generating build results summary... |
| 05-Oct-2018 15:19:17 | Saving build results to disk... |
| 05-Oct-2018 15:19:17 | Logging substituted variables... |
| 05-Oct-2018 15:19:17 | Indexing build results... |
| 05-Oct-2018 15:19:17 | Finished building POL-HYPERSPECTRAL-JOB1-11. |