Build: #3 was successful

Job: Default Job was successful

Stages & jobs

  1. Default Stage

Build log

The build generated 32,830 lines of output.   The output is too long and has been truncated to the last 1,000 lines. Download or view full build log.

20-May-2017 13:45:27 checking for ld used by g++... /usr/bin/ld -m elf_x86_64
20-May-2017 13:45:27 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
20-May-2017 13:45:27 checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
20-May-2017 13:45:27 checking for g++ option to produce PIC... -fPIC -DPIC
20-May-2017 13:45:27 checking if g++ PIC flag -fPIC -DPIC works... yes
20-May-2017 13:45:27 checking if g++ static flag -static works... yes
20-May-2017 13:45:27 checking if g++ supports -c -o file.o... yes
20-May-2017 13:45:27 checking if g++ supports -c -o file.o... (cached) yes
20-May-2017 13:45:27 checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
20-May-2017 13:45:27 checking dynamic linker characteristics... (cached) GNU/Linux ld.so
20-May-2017 13:45:27 checking how to hardcode library paths into programs... immediate
20-May-2017 13:45:27 checking whether to enable maintainer-specific portions of Makefiles... no
20-May-2017 13:45:27 checking for working memcmp... yes
20-May-2017 13:45:27 checking whether lstat correctly handles trailing slash... yes
20-May-2017 13:45:27 checking whether stat accepts an empty string... no
20-May-2017 13:45:27 checking for working strtod... yes
20-May-2017 13:45:27 checking for canonicalize_file_name... yes
20-May-2017 13:45:28 checking for floor... no
20-May-2017 13:45:28 checking for gethostname... yes
20-May-2017 13:45:28 checking for getpagesize... yes
20-May-2017 13:45:28 checking for getrusage... yes
20-May-2017 13:45:28 checking for memchr... yes
20-May-2017 13:45:28 checking for memmove... yes
20-May-2017 13:45:28 checking for memset... yes
20-May-2017 13:45:28 checking for mkstemp... yes
20-May-2017 13:45:28 checking for pow... no
20-May-2017 13:45:28 checking for readlink... yes
20-May-2017 13:45:28 checking for realpath... yes
20-May-2017 13:45:28 checking for regcomp... yes
20-May-2017 13:45:28 checking for setlocale... yes
20-May-2017 13:45:28 checking for sqrt... no
20-May-2017 13:45:28 checking for strchr... yes
20-May-2017 13:45:28 checking for strerror... yes
20-May-2017 13:45:28 checking for strpbrk... yes
20-May-2017 13:45:28 checking for strrchr... yes
20-May-2017 13:45:29 checking for strstr... yes
20-May-2017 13:45:29 checking for strtol... yes
20-May-2017 13:45:29 checking for ANSI C header files... (cached) yes
20-May-2017 13:45:29 checking getopt.h usability... yes
20-May-2017 13:45:29 checking getopt.h presence... yes
20-May-2017 13:45:29 checking for getopt.h... yes
20-May-2017 13:45:29 checking libintl.h usability... yes
20-May-2017 13:45:29 checking libintl.h presence... yes
20-May-2017 13:45:29 checking for libintl.h... yes
20-May-2017 13:45:29 checking limits.h usability... yes
20-May-2017 13:45:29 checking limits.h presence... yes
20-May-2017 13:45:29 checking for limits.h... yes
20-May-2017 13:45:29 checking locale.h usability... yes
20-May-2017 13:45:29 checking locale.h presence... yes
20-May-2017 13:45:29 checking for locale.h... yes
20-May-2017 13:45:29 checking netinet/in.h usability... yes
20-May-2017 13:45:29 checking netinet/in.h presence... yes
20-May-2017 13:45:29 checking for netinet/in.h... yes
20-May-2017 13:45:29 checking for stdlib.h... (cached) yes
20-May-2017 13:45:29 checking for string.h... (cached) yes
20-May-2017 13:45:29 checking for strings.h... (cached) yes
20-May-2017 13:45:29 checking for unistd.h... (cached) yes
20-May-2017 13:45:29 checking cstdlib usability... yes
20-May-2017 13:45:29 checking cstdlib presence... yes
20-May-2017 13:45:29 checking for cstdlib... yes
20-May-2017 13:45:29 checking for an ANSI C-conforming const... yes
20-May-2017 13:45:29 checking for inline... inline
20-May-2017 13:45:29 checking for pid_t... yes
20-May-2017 13:45:29 checking for size_t... yes
20-May-2017 13:45:29 checking whether struct tm is in sys/time.h or time.h... time.h
20-May-2017 13:45:29 checking for uid_t in sys/types.h... yes
20-May-2017 13:45:29 checking for ptrdiff_t... yes
20-May-2017 13:45:29 checking size of int*... 8
20-May-2017 13:45:29 checking whether C++ compiler implements namespaces... yes
20-May-2017 13:45:29 checking whether C++ compiler has working valarray<T>... yes
20-May-2017 13:45:29 checking for special C compiler options needed for large files... no
20-May-2017 13:45:29 checking for _FILE_OFFSET_BITS value needed for large files... no
20-May-2017 13:45:29 #################################
20-May-2017 13:45:29 #  Test for netCDF             #
20-May-2017 13:45:29 ################################
20-May-2017 13:45:29 checking for /opt/local/include/netcdf.h... no
20-May-2017 13:45:29 checking for /opt/local/lib/libnetcdf.a... no
20-May-2017 13:45:29 checking netcdf.h usability... yes
20-May-2017 13:45:29 checking netcdf.h presence... yes
20-May-2017 13:45:29 checking for netcdf.h... yes
20-May-2017 13:45:30 checking for nc_open in -lnetcdf... yes
20-May-2017 13:45:30 #################################
20-May-2017 13:45:30 #  Test for netCDF4 support     #
20-May-2017 13:45:30 #################################
20-May-2017 13:45:30 checking whether NC_CHUNKED is declared... yes
20-May-2017 13:45:30 configure: netcdf.h contains netCDF4 definitions
20-May-2017 13:45:30 checking for nc_def_var_chunking in -lnetcdf... yes
20-May-2017 13:45:30 configure: Good news: Simple program compiles and links to netCDF4 library
20-May-2017 13:45:30 checking for gcc -std=gnu99 option to support OpenMP... -fopenmp
20-May-2017 13:45:30 configure: OpenMP support enabled
20-May-2017 13:45:30 Beginning generic tests for DAP support
20-May-2017 13:45:30 Testing for DAP-netCDF support (is DAP in libnetcdf.a?)...
20-May-2017 13:45:30 checking for daperror in -lnetcdf... no
20-May-2017 13:45:30 configure: WARNING: DAP-netCDF support through libnetcdf.a disabled (missing DAP functions)
20-May-2017 13:45:30 checking for getopt_long... yes
20-May-2017 13:45:30 checking for _g95_ac_array in -lf95... no
20-May-2017 13:45:30 checking for sin in -lm... yes
20-May-2017 13:45:30 checking for sinf in -lsunmath... no
20-May-2017 13:45:30 checking for gettext in -lintl... no
20-May-2017 13:45:30 checking for res_init in -lresolv... no
20-May-2017 13:45:30 checking for main in -lsocket... no
20-May-2017 13:45:30 checking for main in -lthread... no
20-May-2017 13:45:30 checking for nco_open in -lnco... no
20-May-2017 13:45:30 checking for nc_inq_format... yes
20-May-2017 13:45:30 checking for getopt... yes
20-May-2017 13:45:30 checking for getopt_long... (cached) yes
20-May-2017 13:45:30 checking for atan2... yes
20-May-2017 13:45:30 checking for acosf... yes
20-May-2017 13:45:30 checking for asinf... yes
20-May-2017 13:45:30 checking for atanf... yes
20-May-2017 13:45:30 checking for atan2f... yes
20-May-2017 13:45:30 checking for cosf... yes
20-May-2017 13:45:31 checking for expf... yes
20-May-2017 13:45:31 checking for fabsf... yes
20-May-2017 13:45:31 checking for fmodf... yes
20-May-2017 13:45:31 checking for log10f... yes
20-May-2017 13:45:31 checking for logf... yes
20-May-2017 13:45:31 checking for powf... yes
20-May-2017 13:45:31 checking for sinf... yes
20-May-2017 13:45:31 checking for sqrtf... yes
20-May-2017 13:45:31 checking for tanf... yes
20-May-2017 13:45:31 checking for erff... yes
20-May-2017 13:45:31 checking for erfcf... yes
20-May-2017 13:45:31 checking for gammaf... yes
20-May-2017 13:45:31 checking for acoshf... yes
20-May-2017 13:45:31 checking for asinhf... yes
20-May-2017 13:45:31 checking for atanhf... yes
20-May-2017 13:45:31 checking for coshf... yes
20-May-2017 13:45:31 checking for sinhf... yes
20-May-2017 13:45:31 checking for tanhf... yes
20-May-2017 13:45:31 checking for ceilf... yes
20-May-2017 13:45:31 checking for floorf... yes
20-May-2017 13:45:31 checking for nearbyint... yes
20-May-2017 13:45:32 checking for rint... yes
20-May-2017 13:45:32 checking for round... yes
20-May-2017 13:45:32 checking for trunc... yes
20-May-2017 13:45:32 checking for nearbyintf... yes
20-May-2017 13:45:32 checking for rintf... yes
20-May-2017 13:45:32 checking for roundf... yes
20-May-2017 13:45:32 checking for truncf... yes
20-May-2017 13:45:32 checking for getopt_long... (cached) yes
20-May-2017 13:45:32 checking for strdup... yes
20-May-2017 13:45:32 checking for strcasecmp... yes
20-May-2017 13:45:32 checking for strcasestr... yes
20-May-2017 13:45:32 ##########################################################
20-May-2017 13:45:32 #     Sorting out MacOSX build parameters                #
20-May-2017 13:45:32 ##########################################################
20-May-2017 13:45:32 #################################
20-May-2017 13:45:32 #  Testing for ANTLR support    #
20-May-2017 13:45:32 #################################
20-May-2017 13:45:32 checking for runantlr... runantlr
20-May-2017 13:45:32 configure: antlr library was found
20-May-2017 13:45:32 ##################################################
20-May-2017 13:45:32 # Testing for ESMF support (only for developers) #
20-May-2017 13:45:32 ##################################################
20-May-2017 13:45:32 ########################################
20-May-2017 13:45:32 #     Testing for GSL support          #
20-May-2017 13:45:32 ########################################
20-May-2017 13:45:32 configure: WARNING: Did not find 'gsl-config' command in your default path
20-May-2017 13:45:32 checking regex.h usability... yes
20-May-2017 13:45:32 checking regex.h presence... yes
20-May-2017 13:45:32 checking for regex.h... yes
20-May-2017 13:45:32 checking for sys/types.h... (cached) yes
20-May-2017 13:45:32 checking for regexec... yes
20-May-2017 13:45:32 checking for regcomp... (cached) yes
20-May-2017 13:45:32 checking for regfree... yes
20-May-2017 13:45:32 ########################################
20-May-2017 13:45:32 #     Testing for UDUNITS support      #
20-May-2017 13:45:32 ########################################
20-May-2017 13:45:32 WARNING: Requested both UDUnits and UDUnits2 support---overriding UDUnits
20-May-2017 13:45:32 Will attempt to build NCO with UDUnits support from libudunits2, not from libudunits
20-May-2017 13:45:32 checking for XML_ParserCreate in -lexpat... yes
20-May-2017 13:45:32 checking for /usr/include/udunits2/udunits2.h... no
20-May-2017 13:45:32 checking for /usr/include/udunits2.h... yes
20-May-2017 13:45:32 checking for /usr/lib/x86_64-linux-gnu/libudunits2.a... yes
20-May-2017 13:45:32 checking for /usr/lib/i386-linux-gnu/libudunits2.a... no
20-May-2017 13:45:32 checking for /opt/local/include/udunits2/udunits2.h... no
20-May-2017 13:45:32 checking for /opt/local/lib/libudunits2.a... no
20-May-2017 13:45:32 checking for ... no
20-May-2017 13:45:32 configure: WARNING: file  was not found but will still attempt to build NCO with UDUnits2 support.
20-May-2017 13:45:32 configure: NB: Following tests of UDUnits2 library and header must succeed for UDUnits2 support:
20-May-2017 13:45:32 checking for ut_read_xml in -ludunits2... yes
20-May-2017 13:45:32 checking udunits2.h usability... yes
20-May-2017 13:45:32 checking udunits2.h presence... yes
20-May-2017 13:45:32 checking for udunits2.h... yes
20-May-2017 13:45:32 configure: UDUnits2 support enabled
20-May-2017 13:45:32 checking for ncgen... /srv/sw/netcdf-4.4.1/bin/ncgen
20-May-2017 13:45:32 configure: Creating sample netCDF data files for self-tests
20-May-2017 13:45:32 ###############################
20-May-2017 13:45:32 #    Require Shared Libs?     #
20-May-2017 13:45:32 ###############################
20-May-2017 13:45:32 checking for makeinfo... no
20-May-2017 13:45:33 checking that generated files are newer than configure... done
20-May-2017 13:45:33 configure: creating ./config.status
20-May-2017 13:45:33 config.status: creating Makefile
20-May-2017 13:45:33 config.status: creating data/Makefile
20-May-2017 13:45:33 config.status: creating src/Makefile
20-May-2017 13:45:33 config.status: creating src/nco/Makefile
20-May-2017 13:45:33 config.status: creating man/Makefile
20-May-2017 13:45:33 config.status: creating src/nco_c++/Makefile
20-May-2017 13:45:33 config.status: creating src/nco++/Makefile
20-May-2017 13:45:33 config.status: creating config.h
20-May-2017 13:45:33 config.status: executing depfiles commands
20-May-2017 13:45:33 config.status: executing libtool commands
20-May-2017 13:45:34
20-May-2017 13:45:34 Configuration Parameters:
20-May-2017 13:45:34 AR_FLAGS............. cru
20-May-2017 13:45:34 CC................... gcc -std=gnu99
20-May-2017 13:45:34 CFLAGS............... -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE
20-May-2017 13:45:34 CPP.................. gcc -E
20-May-2017 13:45:34 CPPFLAGS............. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include  -I/usr/include
20-May-2017 13:45:34 CXX.................. g++
20-May-2017 13:45:34 CXXFLAGS............. -g -O2
20-May-2017 13:45:34 ENABLE_DAP........... no
20-May-2017 13:45:34 ENABLE_ESMF...........no
20-May-2017 13:45:34 ENABLE_GSL........... no
20-May-2017 13:45:34 ENABLE_NETCDF4....... yes
20-May-2017 13:45:34 ENABLE_OPENMP........ yes
20-May-2017 13:45:34 ENABLE_UDUNITS....... no
20-May-2017 13:45:34 ENABLE_UDUNITS2...... yes
20-May-2017 13:45:34 GSL_ROOT.............
20-May-2017 13:45:34 HAVE_ANTLR........... runantlr
20-May-2017 13:45:34 HAVE_MAKEINFO........ no
20-May-2017 13:45:34 HAVE_NETCDF4_H....... yes
20-May-2017 13:45:34 HOST.................
20-May-2017 13:45:34 HOSTNAME............. 200591939db7
20-May-2017 13:45:34 LDFLAGS.............. -L/srv/sw/netcdf-4.4.1/lib -lnetcdf  -L/srv/sw/netcdf-4.4.1/lib  -L/usr/lib/x86_64-linux-gnu
20-May-2017 13:45:34 LIBS................. -ludunits2 -lexpat -lm -lnetcdf -lnetcdf  -ludunits2
20-May-2017 13:45:34 NETCDF_ROOT.......... /srv/sw/netcdf-4.4.1
20-May-2017 13:45:34 OPENMP_CFLAGS........ -fopenmp
20-May-2017 13:45:34 host................. x86_64-unknown-linux-gnu
20-May-2017 13:45:34 install prefix ...... /srv/sw/nco-4.6.1
20-May-2017 13:45:34 *******************************************************************
20-May-2017 13:45:34 Configuration complete. You are now ready to run 'make'.
20-May-2017 13:45:34 Ensure 'make' points to GNU Make (AT&T Make chokes on GNU syntax).
20-May-2017 13:45:34 If the build fails, please examine the file 'configure.eg'
20-May-2017 13:45:34 in the top-level NCO directory.  It contains examples known to
20-May-2017 13:45:34 build NCO for various platforms and compilers.
20-May-2017 13:45:34 *******************************************************************
20-May-2017 13:45:34 make  all-recursive
20-May-2017 13:45:34 make[1]: Entering directory '/srv/downloads/nco-4.6.1'
20-May-2017 13:45:34 Making all in data
20-May-2017 13:45:34 make[2]: Entering directory '/srv/downloads/nco-4.6.1/data'
20-May-2017 13:45:34 /srv/sw/netcdf-4.4.1/bin/ncgen -o big.nc big.cdl
20-May-2017 13:45:34 /srv/sw/netcdf-4.4.1/bin/ncgen -o in_rec_zero.nc in_rec_zero.cdl
20-May-2017 13:45:34 ncks -O -7 --cnk_dmn time,10 in.nc in_4c.nc
20-May-2017 13:45:34 /bin/bash: ncks: command not found
20-May-2017 13:45:34 make[2]: [in_4c.nc] Error 127 (ignored)
20-May-2017 13:45:34 Makefile:562: recipe for target 'in_4c.nc' failed
20-May-2017 13:45:34 /srv/sw/netcdf-4.4.1/bin/ncgen -k netCDF-4 -o in_grp_8.nc in_grp_8.cdl
20-May-2017 13:45:34 /srv/sw/netcdf-4.4.1/bin/ncgen -k netCDF-4 -o hdn.nc hdn.cdl
20-May-2017 13:45:34 /srv/sw/netcdf-4.4.1/bin/ncgen -k netCDF-4 -o mrd.nc mrd.cdl
20-May-2017 13:45:34 make[2]: Leaving directory '/srv/downloads/nco-4.6.1/data'
20-May-2017 13:45:34 Making all in src
20-May-2017 13:45:34 make[2]: Entering directory '/srv/downloads/nco-4.6.1/src'
20-May-2017 13:45:34 Making all in nco
20-May-2017 13:45:34 make[3]: Entering directory '/srv/downloads/nco-4.6.1/src/nco'
20-May-2017 13:45:34 /bin/bash ../../libtool --tag=CXX  --tag=CC   --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../..   -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include  -I/usr/include  -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_att_utl.lo -MD -MP -MF .deps/nco_att_utl.Tpo -c -o nco_att_utl.lo nco_att_utl.c
20-May-2017 13:45:34 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_att_utl.lo -MD -MP -MF .deps/nco_att_utl.Tpo -c nco_att_utl.c  -fPIC -DPIC -o .libs/nco_att_utl.o
20-May-2017 13:45:34 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_att_utl.lo -MD -MP -MF .deps/nco_att_utl.Tpo -c nco_att_utl.c -o nco_att_utl.o >/dev/null 2>&1
20-May-2017 13:45:35 mv -f .deps/nco_att_utl.Tpo .deps/nco_att_utl.Plo
20-May-2017 13:45:35 /bin/bash ../../libtool --tag=CXX  --tag=CC   --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../..   -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include  -I/usr/include  -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_aux.lo -MD -MP -MF .deps/nco_aux.Tpo -c -o nco_aux.lo nco_aux.c
20-May-2017 13:45:35 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_aux.lo -MD -MP -MF .deps/nco_aux.Tpo -c nco_aux.c  -fPIC -DPIC -o .libs/nco_aux.o
20-May-2017 13:45:35 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_aux.lo -MD -MP -MF .deps/nco_aux.Tpo -c nco_aux.c -o nco_aux.o >/dev/null 2>&1
20-May-2017 13:45:35 mv -f .deps/nco_aux.Tpo .deps/nco_aux.Plo
20-May-2017 13:45:35 /bin/bash ../../libtool --tag=CXX  --tag=CC   --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../..   -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include  -I/usr/include  -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_bnr.lo -MD -MP -MF .deps/nco_bnr.Tpo -c -o nco_bnr.lo nco_bnr.c
20-May-2017 13:45:35 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_bnr.lo -MD -MP -MF .deps/nco_bnr.Tpo -c nco_bnr.c  -fPIC -DPIC -o .libs/nco_bnr.o
20-May-2017 13:45:36 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_bnr.lo -MD -MP -MF .deps/nco_bnr.Tpo -c nco_bnr.c -o nco_bnr.o >/dev/null 2>&1
20-May-2017 13:45:36 mv -f .deps/nco_bnr.Tpo .deps/nco_bnr.Plo
20-May-2017 13:45:36 /bin/bash ../../libtool --tag=CXX  --tag=CC   --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../..   -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include  -I/usr/include  -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_cln_utl.lo -MD -MP -MF .deps/nco_cln_utl.Tpo -c -o nco_cln_utl.lo nco_cln_utl.c
20-May-2017 13:45:36 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_cln_utl.lo -MD -MP -MF .deps/nco_cln_utl.Tpo -c nco_cln_utl.c  -fPIC -DPIC -o .libs/nco_cln_utl.o
20-May-2017 13:45:36 nco_cln_utl.c: In function 'nco_cln_clc_org':
20-May-2017 13:45:36 nco_cln_utl.c:683:3: warning: implicit declaration of function 'strcasestr' [-Wimplicit-function-declaration]
20-May-2017 13:45:36    if(strcasestr(fl_bs_sng," from ") || strcasestr(fl_bs_sng," since ") || strcasestr(fl_bs_sng," after ")){
20-May-2017 13:45:36    ^
20-May-2017 13:45:36 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_cln_utl.lo -MD -MP -MF .deps/nco_cln_utl.Tpo -c nco_cln_utl.c -o nco_cln_utl.o >/dev/null 2>&1
20-May-2017 13:45:36 mv -f .deps/nco_cln_utl.Tpo .deps/nco_cln_utl.Plo
20-May-2017 13:45:36 /bin/bash ../../libtool --tag=CXX  --tag=CC   --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../..   -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include  -I/usr/include  -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_cnf_dmn.lo -MD -MP -MF .deps/nco_cnf_dmn.Tpo -c -o nco_cnf_dmn.lo nco_cnf_dmn.c
20-May-2017 13:45:36 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_cnf_dmn.lo -MD -MP -MF .deps/nco_cnf_dmn.Tpo -c nco_cnf_dmn.c  -fPIC -DPIC -o .libs/nco_cnf_dmn.o
20-May-2017 13:45:36 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_cnf_dmn.lo -MD -MP -MF .deps/nco_cnf_dmn.Tpo -c nco_cnf_dmn.c -o nco_cnf_dmn.o >/dev/null 2>&1
20-May-2017 13:45:37 mv -f .deps/nco_cnf_dmn.Tpo .deps/nco_cnf_dmn.Plo
20-May-2017 13:45:37 /bin/bash ../../libtool --tag=CXX  --tag=CC   --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../..   -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include  -I/usr/include  -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_cnf_typ.lo -MD -MP -MF .deps/nco_cnf_typ.Tpo -c -o nco_cnf_typ.lo nco_cnf_typ.c
20-May-2017 13:45:37 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_cnf_typ.lo -MD -MP -MF .deps/nco_cnf_typ.Tpo -c nco_cnf_typ.c  -fPIC -DPIC -o .libs/nco_cnf_typ.o
20-May-2017 13:45:37 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_cnf_typ.lo -MD -MP -MF .deps/nco_cnf_typ.Tpo -c nco_cnf_typ.c -o nco_cnf_typ.o >/dev/null 2>&1
20-May-2017 13:45:38 mv -f .deps/nco_cnf_typ.Tpo .deps/nco_cnf_typ.Plo
20-May-2017 13:45:38 /bin/bash ../../libtool --tag=CXX  --tag=CC   --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../..   -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include  -I/usr/include  -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_cnk.lo -MD -MP -MF .deps/nco_cnk.Tpo -c -o nco_cnk.lo nco_cnk.c
20-May-2017 13:45:38 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_cnk.lo -MD -MP -MF .deps/nco_cnk.Tpo -c nco_cnk.c  -fPIC -DPIC -o .libs/nco_cnk.o
20-May-2017 13:45:39 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_cnk.lo -MD -MP -MF .deps/nco_cnk.Tpo -c nco_cnk.c -o nco_cnk.o >/dev/null 2>&1
20-May-2017 13:45:39 mv -f .deps/nco_cnk.Tpo .deps/nco_cnk.Plo
20-May-2017 13:45:39 /bin/bash ../../libtool --tag=CXX  --tag=CC   --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../..   -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include  -I/usr/include  -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_cnv_arm.lo -MD -MP -MF .deps/nco_cnv_arm.Tpo -c -o nco_cnv_arm.lo nco_cnv_arm.c
20-May-2017 13:45:39 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_cnv_arm.lo -MD -MP -MF .deps/nco_cnv_arm.Tpo -c nco_cnv_arm.c  -fPIC -DPIC -o .libs/nco_cnv_arm.o
20-May-2017 13:45:39 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_cnv_arm.lo -MD -MP -MF .deps/nco_cnv_arm.Tpo -c nco_cnv_arm.c -o nco_cnv_arm.o >/dev/null 2>&1
20-May-2017 13:45:39 mv -f .deps/nco_cnv_arm.Tpo .deps/nco_cnv_arm.Plo
20-May-2017 13:45:39 /bin/bash ../../libtool --tag=CXX  --tag=CC   --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../..   -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include  -I/usr/include  -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_cnv_csm.lo -MD -MP -MF .deps/nco_cnv_csm.Tpo -c -o nco_cnv_csm.lo nco_cnv_csm.c
20-May-2017 13:45:39 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_cnv_csm.lo -MD -MP -MF .deps/nco_cnv_csm.Tpo -c nco_cnv_csm.c  -fPIC -DPIC -o .libs/nco_cnv_csm.o
20-May-2017 13:45:40 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_cnv_csm.lo -MD -MP -MF .deps/nco_cnv_csm.Tpo -c nco_cnv_csm.c -o nco_cnv_csm.o >/dev/null 2>&1
20-May-2017 13:45:40 mv -f .deps/nco_cnv_csm.Tpo .deps/nco_cnv_csm.Plo
20-May-2017 13:45:40 /bin/bash ../../libtool --tag=CXX  --tag=CC   --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../..   -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include  -I/usr/include  -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_ctl.lo -MD -MP -MF .deps/nco_ctl.Tpo -c -o nco_ctl.lo nco_ctl.c
20-May-2017 13:45:40 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_ctl.lo -MD -MP -MF .deps/nco_ctl.Tpo -c nco_ctl.c  -fPIC -DPIC -o .libs/nco_ctl.o
20-May-2017 13:45:40 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_ctl.lo -MD -MP -MF .deps/nco_ctl.Tpo -c nco_ctl.c -o nco_ctl.o >/dev/null 2>&1
20-May-2017 13:45:41 mv -f .deps/nco_ctl.Tpo .deps/nco_ctl.Plo
20-May-2017 13:45:41 /bin/bash ../../libtool --tag=CXX  --tag=CC   --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../..   -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include  -I/usr/include  -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_dbg.lo -MD -MP -MF .deps/nco_dbg.Tpo -c -o nco_dbg.lo nco_dbg.c
20-May-2017 13:45:41 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_dbg.lo -MD -MP -MF .deps/nco_dbg.Tpo -c nco_dbg.c  -fPIC -DPIC -o .libs/nco_dbg.o
20-May-2017 13:45:41 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_dbg.lo -MD -MP -MF .deps/nco_dbg.Tpo -c nco_dbg.c -o nco_dbg.o >/dev/null 2>&1
20-May-2017 13:45:41 mv -f .deps/nco_dbg.Tpo .deps/nco_dbg.Plo
20-May-2017 13:45:41 /bin/bash ../../libtool --tag=CXX  --tag=CC   --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../..   -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include  -I/usr/include  -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_dmn_utl.lo -MD -MP -MF .deps/nco_dmn_utl.Tpo -c -o nco_dmn_utl.lo nco_dmn_utl.c
20-May-2017 13:45:41 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_dmn_utl.lo -MD -MP -MF .deps/nco_dmn_utl.Tpo -c nco_dmn_utl.c  -fPIC -DPIC -o .libs/nco_dmn_utl.o
20-May-2017 13:45:41 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_dmn_utl.lo -MD -MP -MF .deps/nco_dmn_utl.Tpo -c nco_dmn_utl.c -o nco_dmn_utl.o >/dev/null 2>&1
20-May-2017 13:45:41 mv -f .deps/nco_dmn_utl.Tpo .deps/nco_dmn_utl.Plo
20-May-2017 13:45:41 /bin/bash ../../libtool --tag=CXX  --tag=CC   --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../..   -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include  -I/usr/include  -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_fl_utl.lo -MD -MP -MF .deps/nco_fl_utl.Tpo -c -o nco_fl_utl.lo nco_fl_utl.c
20-May-2017 13:45:41 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_fl_utl.lo -MD -MP -MF .deps/nco_fl_utl.Tpo -c nco_fl_utl.c  -fPIC -DPIC -o .libs/nco_fl_utl.o
20-May-2017 13:45:41 nco_fl_utl.c: In function 'nco_create_mode_prs':
20-May-2017 13:45:41 nco_fl_utl.c:62:3: warning: implicit declaration of function 'strcasestr' [-Wimplicit-function-declaration]
20-May-2017 13:45:41    if(strcasestr("classic",fl_fmt_sng) && !strcasestr(fl_fmt_sng,"netcdf4")){
20-May-2017 13:45:41    ^
20-May-2017 13:45:42 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_fl_utl.lo -MD -MP -MF .deps/nco_fl_utl.Tpo -c nco_fl_utl.c -o nco_fl_utl.o >/dev/null 2>&1
20-May-2017 13:45:42 mv -f .deps/nco_fl_utl.Tpo .deps/nco_fl_utl.Plo
20-May-2017 13:45:42 /bin/bash ../../libtool --tag=CXX  --tag=CC   --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../..   -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include  -I/usr/include  -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_grp_utl.lo -MD -MP -MF .deps/nco_grp_utl.Tpo -c -o nco_grp_utl.lo nco_grp_utl.c
20-May-2017 13:45:42 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_grp_utl.lo -MD -MP -MF .deps/nco_grp_utl.Tpo -c nco_grp_utl.c  -fPIC -DPIC -o .libs/nco_grp_utl.o
20-May-2017 13:45:45 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_grp_utl.lo -MD -MP -MF .deps/nco_grp_utl.Tpo -c nco_grp_utl.c -o nco_grp_utl.o >/dev/null 2>&1
20-May-2017 13:45:47 mv -f .deps/nco_grp_utl.Tpo .deps/nco_grp_utl.Plo
20-May-2017 13:45:47 /bin/bash ../../libtool --tag=CXX  --tag=CC   --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../..   -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include  -I/usr/include  -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_grp_trv.lo -MD -MP -MF .deps/nco_grp_trv.Tpo -c -o nco_grp_trv.lo nco_grp_trv.c
20-May-2017 13:45:47 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_grp_trv.lo -MD -MP -MF .deps/nco_grp_trv.Tpo -c nco_grp_trv.c  -fPIC -DPIC -o .libs/nco_grp_trv.o
20-May-2017 13:45:48 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_grp_trv.lo -MD -MP -MF .deps/nco_grp_trv.Tpo -c nco_grp_trv.c -o nco_grp_trv.o >/dev/null 2>&1
20-May-2017 13:45:48 mv -f .deps/nco_grp_trv.Tpo .deps/nco_grp_trv.Plo
20-May-2017 13:45:48 /bin/bash ../../libtool --tag=CXX  --tag=CC   --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../..   -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include  -I/usr/include  -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_lmt.lo -MD -MP -MF .deps/nco_lmt.Tpo -c -o nco_lmt.lo nco_lmt.c
20-May-2017 13:45:49 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_lmt.lo -MD -MP -MF .deps/nco_lmt.Tpo -c nco_lmt.c  -fPIC -DPIC -o .libs/nco_lmt.o
20-May-2017 13:45:49 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_lmt.lo -MD -MP -MF .deps/nco_lmt.Tpo -c nco_lmt.c -o nco_lmt.o >/dev/null 2>&1
20-May-2017 13:45:49 mv -f .deps/nco_lmt.Tpo .deps/nco_lmt.Plo
20-May-2017 13:45:49 /bin/bash ../../libtool --tag=CXX  --tag=CC   --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../..   -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include  -I/usr/include  -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_lst_utl.lo -MD -MP -MF .deps/nco_lst_utl.Tpo -c -o nco_lst_utl.lo nco_lst_utl.c
20-May-2017 13:45:49 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_lst_utl.lo -MD -MP -MF .deps/nco_lst_utl.Tpo -c nco_lst_utl.c  -fPIC -DPIC -o .libs/nco_lst_utl.o
20-May-2017 13:45:50 nco_lst_utl.c: In function 'nco_fmt_sng_printf_subst':
20-May-2017 13:45:50 nco_lst_utl.c:38:23: warning: unknown escape sequence: '\.'
20-May-2017 13:45:50    const char rx_sng[]="%([+-0#'I])?([0-9]*)?([\.?[0-9]*)?([h+l+Ljzt])?[bcdeEfFgGiosuxX]"; /* [sng] Regular expression pattern */
20-May-2017 13:45:50                        ^
20-May-2017 13:45:50 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_lst_utl.lo -MD -MP -MF .deps/nco_lst_utl.Tpo -c nco_lst_utl.c -o nco_lst_utl.o >/dev/null 2>&1
20-May-2017 13:45:50 mv -f .deps/nco_lst_utl.Tpo .deps/nco_lst_utl.Plo
20-May-2017 13:45:50 /bin/bash ../../libtool --tag=CXX  --tag=CC   --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../..   -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include  -I/usr/include  -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_md5.lo -MD -MP -MF .deps/nco_md5.Tpo -c -o nco_md5.lo nco_md5.c
20-May-2017 13:45:50 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_md5.lo -MD -MP -MF .deps/nco_md5.Tpo -c nco_md5.c  -fPIC -DPIC -o .libs/nco_md5.o
20-May-2017 13:45:50 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_md5.lo -MD -MP -MF .deps/nco_md5.Tpo -c nco_md5.c -o nco_md5.o >/dev/null 2>&1
20-May-2017 13:45:50 mv -f .deps/nco_md5.Tpo .deps/nco_md5.Plo
20-May-2017 13:45:50 /bin/bash ../../libtool --tag=CXX  --tag=CC   --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../..   -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include  -I/usr/include  -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_mmr.lo -MD -MP -MF .deps/nco_mmr.Tpo -c -o nco_mmr.lo nco_mmr.c
20-May-2017 13:45:50 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_mmr.lo -MD -MP -MF .deps/nco_mmr.Tpo -c nco_mmr.c  -fPIC -DPIC -o .libs/nco_mmr.o
20-May-2017 13:45:50 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_mmr.lo -MD -MP -MF .deps/nco_mmr.Tpo -c nco_mmr.c -o nco_mmr.o >/dev/null 2>&1
20-May-2017 13:45:51 mv -f .deps/nco_mmr.Tpo .deps/nco_mmr.Plo
20-May-2017 13:45:51 /bin/bash ../../libtool --tag=CXX  --tag=CC   --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../..   -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include  -I/usr/include  -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_msa.lo -MD -MP -MF .deps/nco_msa.Tpo -c -o nco_msa.lo nco_msa.c
20-May-2017 13:45:51 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_msa.lo -MD -MP -MF .deps/nco_msa.Tpo -c nco_msa.c  -fPIC -DPIC -o .libs/nco_msa.o
20-May-2017 13:45:51 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_msa.lo -MD -MP -MF .deps/nco_msa.Tpo -c nco_msa.c -o nco_msa.o >/dev/null 2>&1
20-May-2017 13:45:52 mv -f .deps/nco_msa.Tpo .deps/nco_msa.Plo
20-May-2017 13:45:52 /bin/bash ../../libtool --tag=CXX  --tag=CC   --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../..   -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include  -I/usr/include  -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_mss_val.lo -MD -MP -MF .deps/nco_mss_val.Tpo -c -o nco_mss_val.lo nco_mss_val.c
20-May-2017 13:45:52 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_mss_val.lo -MD -MP -MF .deps/nco_mss_val.Tpo -c nco_mss_val.c  -fPIC -DPIC -o .libs/nco_mss_val.o
20-May-2017 13:45:52 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_mss_val.lo -MD -MP -MF .deps/nco_mss_val.Tpo -c nco_mss_val.c -o nco_mss_val.o >/dev/null 2>&1
20-May-2017 13:45:52 mv -f .deps/nco_mss_val.Tpo .deps/nco_mss_val.Plo
20-May-2017 13:45:52 /bin/bash ../../libtool --tag=CXX  --tag=CC   --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../..   -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include  -I/usr/include  -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_netcdf.lo -MD -MP -MF .deps/nco_netcdf.Tpo -c -o nco_netcdf.lo nco_netcdf.c
20-May-2017 13:45:52 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_netcdf.lo -MD -MP -MF .deps/nco_netcdf.Tpo -c nco_netcdf.c  -fPIC -DPIC -o .libs/nco_netcdf.o
20-May-2017 13:45:52 nco_netcdf.c: In function 'nco_open_mem':
20-May-2017 13:45:52 nco_netcdf.c:710:3: warning: implicit declaration of function 'nc_open_mem' [-Wimplicit-function-declaration]
20-May-2017 13:45:52    rcd=nc_open_mem(fl_nm,mode,sz,void_ptr,nc_id);
20-May-2017 13:45:52    ^
20-May-2017 13:45:52 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_netcdf.lo -MD -MP -MF .deps/nco_netcdf.Tpo -c nco_netcdf.c -o nco_netcdf.o >/dev/null 2>&1
20-May-2017 13:45:53 mv -f .deps/nco_netcdf.Tpo .deps/nco_netcdf.Plo
20-May-2017 13:45:53 /bin/bash ../../libtool --tag=CXX  --tag=CC   --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../..   -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include  -I/usr/include  -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_omp.lo -MD -MP -MF .deps/nco_omp.Tpo -c -o nco_omp.lo nco_omp.c
20-May-2017 13:45:53 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_omp.lo -MD -MP -MF .deps/nco_omp.Tpo -c nco_omp.c  -fPIC -DPIC -o .libs/nco_omp.o
20-May-2017 13:45:53 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_omp.lo -MD -MP -MF .deps/nco_omp.Tpo -c nco_omp.c -o nco_omp.o >/dev/null 2>&1
20-May-2017 13:45:53 mv -f .deps/nco_omp.Tpo .deps/nco_omp.Plo
20-May-2017 13:45:53 /bin/bash ../../libtool --tag=CXX  --tag=CC   --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../..   -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include  -I/usr/include  -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_pck.lo -MD -MP -MF .deps/nco_pck.Tpo -c -o nco_pck.lo nco_pck.c
20-May-2017 13:45:53 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_pck.lo -MD -MP -MF .deps/nco_pck.Tpo -c nco_pck.c  -fPIC -DPIC -o .libs/nco_pck.o
20-May-2017 13:45:53 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_pck.lo -MD -MP -MF .deps/nco_pck.Tpo -c nco_pck.c -o nco_pck.o >/dev/null 2>&1
20-May-2017 13:45:54 mv -f .deps/nco_pck.Tpo .deps/nco_pck.Plo
20-May-2017 13:45:54 /bin/bash ../../libtool --tag=CXX  --tag=CC   --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../..   -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include  -I/usr/include  -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_ppc.lo -MD -MP -MF .deps/nco_ppc.Tpo -c -o nco_ppc.lo nco_ppc.c
20-May-2017 13:45:54 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_ppc.lo -MD -MP -MF .deps/nco_ppc.Tpo -c nco_ppc.c  -fPIC -DPIC -o .libs/nco_ppc.o
20-May-2017 13:45:54 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_ppc.lo -MD -MP -MF .deps/nco_ppc.Tpo -c nco_ppc.c -o nco_ppc.o >/dev/null 2>&1
20-May-2017 13:45:54 mv -f .deps/nco_ppc.Tpo .deps/nco_ppc.Plo
20-May-2017 13:45:54 /bin/bash ../../libtool --tag=CXX  --tag=CC   --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../..   -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include  -I/usr/include  -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_prn.lo -MD -MP -MF .deps/nco_prn.Tpo -c -o nco_prn.lo nco_prn.c
20-May-2017 13:45:54 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_prn.lo -MD -MP -MF .deps/nco_prn.Tpo -c nco_prn.c  -fPIC -DPIC -o .libs/nco_prn.o
20-May-2017 13:45:55 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_prn.lo -MD -MP -MF .deps/nco_prn.Tpo -c nco_prn.c -o nco_prn.o >/dev/null 2>&1
20-May-2017 13:45:56 mv -f .deps/nco_prn.Tpo .deps/nco_prn.Plo
20-May-2017 13:45:56 /bin/bash ../../libtool --tag=CXX  --tag=CC   --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../..   -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include  -I/usr/include  -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_rec_var.lo -MD -MP -MF .deps/nco_rec_var.Tpo -c -o nco_rec_var.lo nco_rec_var.c
20-May-2017 13:45:56 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_rec_var.lo -MD -MP -MF .deps/nco_rec_var.Tpo -c nco_rec_var.c  -fPIC -DPIC -o .libs/nco_rec_var.o
20-May-2017 13:45:56 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_rec_var.lo -MD -MP -MF .deps/nco_rec_var.Tpo -c nco_rec_var.c -o nco_rec_var.o >/dev/null 2>&1
20-May-2017 13:45:56 mv -f .deps/nco_rec_var.Tpo .deps/nco_rec_var.Plo
20-May-2017 13:45:56 /bin/bash ../../libtool --tag=CXX  --tag=CC   --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../..   -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include  -I/usr/include  -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_rgr.lo -MD -MP -MF .deps/nco_rgr.Tpo -c -o nco_rgr.lo nco_rgr.c
20-May-2017 13:45:56 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_rgr.lo -MD -MP -MF .deps/nco_rgr.Tpo -c nco_rgr.c  -fPIC -DPIC -o .libs/nco_rgr.o
20-May-2017 13:45:56 nco_rgr.c: In function 'nco_rgr_map':
20-May-2017 13:45:56 nco_rgr.c:1607:7: warning: implicit declaration of function 'strcasestr' [-Wimplicit-function-declaration]
20-May-2017 13:45:56        if(!strcasestr(cf->unt_sng[0],"degrees_")) (void)fprintf(stderr,"%s: WARNING %s reports first coordinates variable %s has weird units attribute = %s. May not detect correct ordering of latitude and longitude coordinates\n",nco_prg_nm_get(),fnc_nm,cf->crd_nm[0],cf->unt_sng[0]);
20-May-2017 13:45:56        ^
20-May-2017 13:46:00 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_rgr.lo -MD -MP -MF .deps/nco_rgr.Tpo -c nco_rgr.c -o nco_rgr.o >/dev/null 2>&1
20-May-2017 13:46:03 mv -f .deps/nco_rgr.Tpo .deps/nco_rgr.Plo
20-May-2017 13:46:03 /bin/bash ../../libtool --tag=CXX  --tag=CC   --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../..   -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include  -I/usr/include  -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_rth_flt.lo -MD -MP -MF .deps/nco_rth_flt.Tpo -c -o nco_rth_flt.lo nco_rth_flt.c
20-May-2017 13:46:03 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_rth_flt.lo -MD -MP -MF .deps/nco_rth_flt.Tpo -c nco_rth_flt.c  -fPIC -DPIC -o .libs/nco_rth_flt.o
20-May-2017 13:46:03 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_rth_flt.lo -MD -MP -MF .deps/nco_rth_flt.Tpo -c nco_rth_flt.c -o nco_rth_flt.o >/dev/null 2>&1
20-May-2017 13:46:03 mv -f .deps/nco_rth_flt.Tpo .deps/nco_rth_flt.Plo
20-May-2017 13:46:03 /bin/bash ../../libtool --tag=CXX  --tag=CC   --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../..   -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include  -I/usr/include  -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_rth_utl.lo -MD -MP -MF .deps/nco_rth_utl.Tpo -c -o nco_rth_utl.lo nco_rth_utl.c
20-May-2017 13:46:03 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_rth_utl.lo -MD -MP -MF .deps/nco_rth_utl.Tpo -c nco_rth_utl.c  -fPIC -DPIC -o .libs/nco_rth_utl.o
20-May-2017 13:46:03 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_rth_utl.lo -MD -MP -MF .deps/nco_rth_utl.Tpo -c nco_rth_utl.c -o nco_rth_utl.o >/dev/null 2>&1
20-May-2017 13:46:04 mv -f .deps/nco_rth_utl.Tpo .deps/nco_rth_utl.Plo
20-May-2017 13:46:04 /bin/bash ../../libtool --tag=CXX  --tag=CC   --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../..   -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include  -I/usr/include  -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_scl_utl.lo -MD -MP -MF .deps/nco_scl_utl.Tpo -c -o nco_scl_utl.lo nco_scl_utl.c
20-May-2017 13:46:04 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_scl_utl.lo -MD -MP -MF .deps/nco_scl_utl.Tpo -c nco_scl_utl.c  -fPIC -DPIC -o .libs/nco_scl_utl.o
20-May-2017 13:46:04 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_scl_utl.lo -MD -MP -MF .deps/nco_scl_utl.Tpo -c nco_scl_utl.c -o nco_scl_utl.o >/dev/null 2>&1
20-May-2017 13:46:04 mv -f .deps/nco_scl_utl.Tpo .deps/nco_scl_utl.Plo
20-May-2017 13:46:04 /bin/bash ../../libtool --tag=CXX  --tag=CC   --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../..   -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include  -I/usr/include  -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_scm.lo -MD -MP -MF .deps/nco_scm.Tpo -c -o nco_scm.lo nco_scm.c
20-May-2017 13:46:04 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_scm.lo -MD -MP -MF .deps/nco_scm.Tpo -c nco_scm.c  -fPIC -DPIC -o .libs/nco_scm.o
20-May-2017 13:46:04 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_scm.lo -MD -MP -MF .deps/nco_scm.Tpo -c nco_scm.c -o nco_scm.o >/dev/null 2>&1
20-May-2017 13:46:04 mv -f .deps/nco_scm.Tpo .deps/nco_scm.Plo
20-May-2017 13:46:04 /bin/bash ../../libtool --tag=CXX  --tag=CC   --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../..   -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include  -I/usr/include  -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_sld.lo -MD -MP -MF .deps/nco_sld.Tpo -c -o nco_sld.lo nco_sld.c
20-May-2017 13:46:04 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_sld.lo -MD -MP -MF .deps/nco_sld.Tpo -c nco_sld.c  -fPIC -DPIC -o .libs/nco_sld.o
20-May-2017 13:46:04 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_sld.lo -MD -MP -MF .deps/nco_sld.Tpo -c nco_sld.c -o nco_sld.o >/dev/null 2>&1
20-May-2017 13:46:05 mv -f .deps/nco_sld.Tpo .deps/nco_sld.Plo
20-May-2017 13:46:05 /bin/bash ../../libtool --tag=CXX  --tag=CC   --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../..   -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include  -I/usr/include  -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_sng_utl.lo -MD -MP -MF .deps/nco_sng_utl.Tpo -c -o nco_sng_utl.lo nco_sng_utl.c
20-May-2017 13:46:05 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_sng_utl.lo -MD -MP -MF .deps/nco_sng_utl.Tpo -c nco_sng_utl.c  -fPIC -DPIC -o .libs/nco_sng_utl.o
20-May-2017 13:46:05 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_sng_utl.lo -MD -MP -MF .deps/nco_sng_utl.Tpo -c nco_sng_utl.c -o nco_sng_utl.o >/dev/null 2>&1
20-May-2017 13:46:05 mv -f .deps/nco_sng_utl.Tpo .deps/nco_sng_utl.Plo
20-May-2017 13:46:05 /bin/bash ../../libtool --tag=CXX  --tag=CC   --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../..   -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include  -I/usr/include  -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_srm.lo -MD -MP -MF .deps/nco_srm.Tpo -c -o nco_srm.lo nco_srm.c
20-May-2017 13:46:05 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_srm.lo -MD -MP -MF .deps/nco_srm.Tpo -c nco_srm.c  -fPIC -DPIC -o .libs/nco_srm.o
20-May-2017 13:46:05 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_srm.lo -MD -MP -MF .deps/nco_srm.Tpo -c nco_srm.c -o nco_srm.o >/dev/null 2>&1
20-May-2017 13:46:05 mv -f .deps/nco_srm.Tpo .deps/nco_srm.Plo
20-May-2017 13:46:05 /bin/bash ../../libtool --tag=CXX  --tag=CC   --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../..   -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include  -I/usr/include  -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_var_avg.lo -MD -MP -MF .deps/nco_var_avg.Tpo -c -o nco_var_avg.lo nco_var_avg.c
20-May-2017 13:46:05 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_var_avg.lo -MD -MP -MF .deps/nco_var_avg.Tpo -c nco_var_avg.c  -fPIC -DPIC -o .libs/nco_var_avg.o
20-May-2017 13:46:06 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_var_avg.lo -MD -MP -MF .deps/nco_var_avg.Tpo -c nco_var_avg.c -o nco_var_avg.o >/dev/null 2>&1
20-May-2017 13:46:06 mv -f .deps/nco_var_avg.Tpo .deps/nco_var_avg.Plo
20-May-2017 13:46:06 /bin/bash ../../libtool --tag=CXX  --tag=CC   --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../..   -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include  -I/usr/include  -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_var_lst.lo -MD -MP -MF .deps/nco_var_lst.Tpo -c -o nco_var_lst.lo nco_var_lst.c
20-May-2017 13:46:06 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_var_lst.lo -MD -MP -MF .deps/nco_var_lst.Tpo -c nco_var_lst.c  -fPIC -DPIC -o .libs/nco_var_lst.o
20-May-2017 13:46:07 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_var_lst.lo -MD -MP -MF .deps/nco_var_lst.Tpo -c nco_var_lst.c -o nco_var_lst.o >/dev/null 2>&1
20-May-2017 13:46:07 mv -f .deps/nco_var_lst.Tpo .deps/nco_var_lst.Plo
20-May-2017 13:46:07 /bin/bash ../../libtool --tag=CXX  --tag=CC   --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../..   -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include  -I/usr/include  -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_var_rth.lo -MD -MP -MF .deps/nco_var_rth.Tpo -c -o nco_var_rth.lo nco_var_rth.c
20-May-2017 13:46:07 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_var_rth.lo -MD -MP -MF .deps/nco_var_rth.Tpo -c nco_var_rth.c  -fPIC -DPIC -o .libs/nco_var_rth.o
20-May-2017 13:46:08 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_var_rth.lo -MD -MP -MF .deps/nco_var_rth.Tpo -c nco_var_rth.c -o nco_var_rth.o >/dev/null 2>&1
20-May-2017 13:46:09 mv -f .deps/nco_var_rth.Tpo .deps/nco_var_rth.Plo
20-May-2017 13:46:09 /bin/bash ../../libtool --tag=CXX  --tag=CC   --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../..   -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include  -I/usr/include  -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_var_scv.lo -MD -MP -MF .deps/nco_var_scv.Tpo -c -o nco_var_scv.lo nco_var_scv.c
20-May-2017 13:46:09 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_var_scv.lo -MD -MP -MF .deps/nco_var_scv.Tpo -c nco_var_scv.c  -fPIC -DPIC -o .libs/nco_var_scv.o
20-May-2017 13:46:10 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_var_scv.lo -MD -MP -MF .deps/nco_var_scv.Tpo -c nco_var_scv.c -o nco_var_scv.o >/dev/null 2>&1
20-May-2017 13:46:10 mv -f .deps/nco_var_scv.Tpo .deps/nco_var_scv.Plo
20-May-2017 13:46:10 /bin/bash ../../libtool --tag=CXX  --tag=CC   --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../..   -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include  -I/usr/include  -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_var_utl.lo -MD -MP -MF .deps/nco_var_utl.Tpo -c -o nco_var_utl.lo nco_var_utl.c
20-May-2017 13:46:10 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_var_utl.lo -MD -MP -MF .deps/nco_var_utl.Tpo -c nco_var_utl.c  -fPIC -DPIC -o .libs/nco_var_utl.o
20-May-2017 13:46:11 libtool: compile:  gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_var_utl.lo -MD -MP -MF .deps/nco_var_utl.Tpo -c nco_var_utl.c -o nco_var_utl.o >/dev/null 2>&1
20-May-2017 13:46:11 mv -f .deps/nco_var_utl.Tpo .deps/nco_var_utl.Plo
20-May-2017 13:46:11 /bin/bash ../../libtool --tag=CXX  --tag=CC   --mode=link gcc -std=gnu99  -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -release 4.6.1-beta01 -L/srv/sw/netcdf-4.4.1/lib -lnetcdf  -L/srv/sw/netcdf-4.4.1/lib  -L/usr/lib/x86_64-linux-gnu -o libnco.la -rpath /srv/sw/nco-4.6.1/lib   nco_att_utl.lo nco_aux.lo nco_bnr.lo nco_cln_utl.lo nco_cnf_dmn.lo nco_cnf_typ.lo nco_cnk.lo nco_cnv_arm.lo nco_cnv_csm.lo nco_ctl.lo nco_dbg.lo nco_dmn_utl.lo nco_fl_utl.lo nco_grp_utl.lo nco_grp_trv.lo nco_lmt.lo nco_lst_utl.lo nco_md5.lo nco_mmr.lo nco_msa.lo nco_mss_val.lo nco_netcdf.lo nco_omp.lo nco_pck.lo nco_ppc.lo nco_prn.lo nco_rec_var.lo nco_rgr.lo nco_rth_flt.lo nco_rth_utl.lo nco_scl_utl.lo nco_scm.lo nco_sld.lo nco_sng_utl.lo nco_srm.lo nco_var_avg.lo nco_var_lst.lo nco_var_rth.lo nco_var_scv.lo nco_var_utl.lo  -ludunits2 -lexpat -lm -lnetcdf -lnetcdf  -ludunits2
20-May-2017 13:46:11 libtool: link: g++  -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.9/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.9/crtbeginS.o  .libs/nco_att_utl.o .libs/nco_aux.o .libs/nco_bnr.o .libs/nco_cln_utl.o .libs/nco_cnf_dmn.o .libs/nco_cnf_typ.o .libs/nco_cnk.o .libs/nco_cnv_arm.o .libs/nco_cnv_csm.o .libs/nco_ctl.o .libs/nco_dbg.o .libs/nco_dmn_utl.o .libs/nco_fl_utl.o .libs/nco_grp_utl.o .libs/nco_grp_trv.o .libs/nco_lmt.o .libs/nco_lst_utl.o .libs/nco_md5.o .libs/nco_mmr.o .libs/nco_msa.o .libs/nco_mss_val.o .libs/nco_netcdf.o .libs/nco_omp.o .libs/nco_pck.o .libs/nco_ppc.o .libs/nco_prn.o .libs/nco_rec_var.o .libs/nco_rgr.o .libs/nco_rth_flt.o .libs/nco_rth_utl.o .libs/nco_scl_utl.o .libs/nco_scm.o .libs/nco_sld.o .libs/nco_sng_utl.o .libs/nco_srm.o .libs/nco_var_avg.o .libs/nco_var_lst.o .libs/nco_var_rth.o .libs/nco_var_scv.o .libs/nco_var_utl.o   -Wl,-rpath -Wl,/srv/sw/netcdf-4.4.1/lib -Wl,-rpath -Wl,/srv/sw/netcdf-4.4.1/lib -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu /usr/lib/x86_64-linux-gnu/libexpat.so /srv/sw/netcdf-4.4.1/lib/libnetcdf.so -ludunits2 -L/usr/lib/gcc/x86_64-linux-gnu/4.9 -L/usr/lib/gcc/x86_64-linux-gnu/4.9/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.9/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.9/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.9/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.9/../../../x86_64-linux-gnu/crtn.o  -O2 -fopenmp   -fopenmp -Wl,-soname -Wl,libnco-4.6.1-beta01.so -o .libs/libnco-4.6.1-beta01.so
20-May-2017 13:46:11 libtool: link: (cd ".libs" && rm -f "libnco.so" && ln -s "libnco-4.6.1-beta01.so" "libnco.so")
20-May-2017 13:46:11 libtool: link: ar cru .libs/libnco.a  nco_att_utl.o nco_aux.o nco_bnr.o nco_cln_utl.o nco_cnf_dmn.o nco_cnf_typ.o nco_cnk.o nco_cnv_arm.o nco_cnv_csm.o nco_ctl.o nco_dbg.o nco_dmn_utl.o nco_fl_utl.o nco_grp_utl.o nco_grp_trv.o nco_lmt.o nco_lst_utl.o nco_md5.o nco_mmr.o nco_msa.o nco_mss_val.o nco_netcdf.o nco_omp.o nco_pck.o nco_ppc.o nco_prn.o nco_rec_var.o nco_rgr.o nco_rth_flt.o nco_rth_utl.o nco_scl_utl.o nco_scm.o nco_sld.o nco_sng_utl.o nco_srm.o nco_var_avg.o nco_var_lst.o nco_var_rth.o nco_var_scv.o nco_var_utl.o
20-May-2017 13:46:11 libtool: link: ranlib .libs/libnco.a
20-May-2017 13:46:11 libtool: link: ( cd ".libs" && rm -f "libnco.la" && ln -s "../libnco.la" "libnco.la" )
20-May-2017 13:46:11 gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../..   -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include  -I/usr/include  -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT ncatted.o -MD -MP -MF .deps/ncatted.Tpo -c -o ncatted.o ncatted.c
20-May-2017 13:46:11 mv -f .deps/ncatted.Tpo .deps/ncatted.Po
20-May-2017 13:46:11 /bin/bash ../../libtool --tag=CXX  --tag=CC   --mode=link gcc -std=gnu99  -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE  -L/srv/sw/netcdf-4.4.1/lib -lnetcdf  -L/srv/sw/netcdf-4.4.1/lib  -L/usr/lib/x86_64-linux-gnu -o ncatted ncatted.o libnco.la -ludunits2 -lexpat -lm -lnetcdf -lnetcdf  -ludunits2
20-May-2017 13:46:12 libtool: link: gcc -std=gnu99 -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -o .libs/ncatted ncatted.o  -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu ./.libs/libnco.so /usr/lib/x86_64-linux-gnu/libexpat.so -lm /srv/sw/netcdf-4.4.1/lib/libnetcdf.so -ludunits2 -fopenmp -Wl,-rpath -Wl,/srv/sw/nco-4.6.1/lib -Wl,-rpath -Wl,/srv/sw/netcdf-4.4.1/lib
20-May-2017 13:46:12 gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../..   -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include  -I/usr/include  -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT ncbo.o -MD -MP -MF .deps/ncbo.Tpo -c -o ncbo.o ncbo.c
20-May-2017 13:46:12 mv -f .deps/ncbo.Tpo .deps/ncbo.Po
20-May-2017 13:46:12 /bin/bash ../../libtool --tag=CXX  --tag=CC   --mode=link gcc -std=gnu99  -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE  -L/srv/sw/netcdf-4.4.1/lib -lnetcdf  -L/srv/sw/netcdf-4.4.1/lib  -L/usr/lib/x86_64-linux-gnu -o ncbo ncbo.o libnco.la -ludunits2 -lexpat -lm -lnetcdf -lnetcdf  -ludunits2
20-May-2017 13:46:12 libtool: link: gcc -std=gnu99 -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -o .libs/ncbo ncbo.o  -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu ./.libs/libnco.so /usr/lib/x86_64-linux-gnu/libexpat.so -lm /srv/sw/netcdf-4.4.1/lib/libnetcdf.so -ludunits2 -fopenmp -Wl,-rpath -Wl,/srv/sw/nco-4.6.1/lib -Wl,-rpath -Wl,/srv/sw/netcdf-4.4.1/lib
20-May-2017 13:46:12 gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../..   -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include  -I/usr/include  -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT ncecat.o -MD -MP -MF .deps/ncecat.Tpo -c -o ncecat.o ncecat.c
20-May-2017 13:46:13 mv -f .deps/ncecat.Tpo .deps/ncecat.Po
20-May-2017 13:46:13 /bin/bash ../../libtool --tag=CXX  --tag=CC   --mode=link gcc -std=gnu99  -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE  -L/srv/sw/netcdf-4.4.1/lib -lnetcdf  -L/srv/sw/netcdf-4.4.1/lib  -L/usr/lib/x86_64-linux-gnu -o ncecat ncecat.o libnco.la -ludunits2 -lexpat -lm -lnetcdf -lnetcdf  -ludunits2
20-May-2017 13:46:13 libtool: link: gcc -std=gnu99 -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -o .libs/ncecat ncecat.o  -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu ./.libs/libnco.so /usr/lib/x86_64-linux-gnu/libexpat.so -lm /srv/sw/netcdf-4.4.1/lib/libnetcdf.so -ludunits2 -fopenmp -Wl,-rpath -Wl,/srv/sw/nco-4.6.1/lib -Wl,-rpath -Wl,/srv/sw/netcdf-4.4.1/lib
20-May-2017 13:46:13 gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../..   -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include  -I/usr/include  -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT ncflint.o -MD -MP -MF .deps/ncflint.Tpo -c -o ncflint.o ncflint.c
20-May-2017 13:46:13 mv -f .deps/ncflint.Tpo .deps/ncflint.Po
20-May-2017 13:46:13 /bin/bash ../../libtool --tag=CXX  --tag=CC   --mode=link gcc -std=gnu99  -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE  -L/srv/sw/netcdf-4.4.1/lib -lnetcdf  -L/srv/sw/netcdf-4.4.1/lib  -L/usr/lib/x86_64-linux-gnu -o ncflint ncflint.o libnco.la -ludunits2 -lexpat -lm -lnetcdf -lnetcdf  -ludunits2
20-May-2017 13:46:13 libtool: link: gcc -std=gnu99 -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -o .libs/ncflint ncflint.o  -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu ./.libs/libnco.so /usr/lib/x86_64-linux-gnu/libexpat.so -lm /srv/sw/netcdf-4.4.1/lib/libnetcdf.so -ludunits2 -fopenmp -Wl,-rpath -Wl,/srv/sw/nco-4.6.1/lib -Wl,-rpath -Wl,/srv/sw/netcdf-4.4.1/lib
20-May-2017 13:46:13 gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../..   -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include  -I/usr/include  -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT ncks.o -MD -MP -MF .deps/ncks.Tpo -c -o ncks.o ncks.c
20-May-2017 13:46:14 mv -f .deps/ncks.Tpo .deps/ncks.Po
20-May-2017 13:46:14 /bin/bash ../../libtool --tag=CXX  --tag=CC   --mode=link gcc -std=gnu99  -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE  -L/srv/sw/netcdf-4.4.1/lib -lnetcdf  -L/srv/sw/netcdf-4.4.1/lib  -L/usr/lib/x86_64-linux-gnu -o ncks ncks.o libnco.la -ludunits2 -lexpat -lm -lnetcdf -lnetcdf  -ludunits2
20-May-2017 13:46:14 libtool: link: gcc -std=gnu99 -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -o .libs/ncks ncks.o  -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu ./.libs/libnco.so /usr/lib/x86_64-linux-gnu/libexpat.so -lm /srv/sw/netcdf-4.4.1/lib/libnetcdf.so -ludunits2 -fopenmp -Wl,-rpath -Wl,/srv/sw/nco-4.6.1/lib -Wl,-rpath -Wl,/srv/sw/netcdf-4.4.1/lib
20-May-2017 13:46:14 gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../..   -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include  -I/usr/include  -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT ncpdq.o -MD -MP -MF .deps/ncpdq.Tpo -c -o ncpdq.o ncpdq.c
20-May-2017 13:46:14 mv -f .deps/ncpdq.Tpo .deps/ncpdq.Po
20-May-2017 13:46:14 /bin/bash ../../libtool --tag=CXX  --tag=CC   --mode=link gcc -std=gnu99  -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE  -L/srv/sw/netcdf-4.4.1/lib -lnetcdf  -L/srv/sw/netcdf-4.4.1/lib  -L/usr/lib/x86_64-linux-gnu -o ncpdq ncpdq.o libnco.la -ludunits2 -lexpat -lm -lnetcdf -lnetcdf  -ludunits2
20-May-2017 13:46:14 libtool: link: gcc -std=gnu99 -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -o .libs/ncpdq ncpdq.o  -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu ./.libs/libnco.so /usr/lib/x86_64-linux-gnu/libexpat.so -lm /srv/sw/netcdf-4.4.1/lib/libnetcdf.so -ludunits2 -fopenmp -Wl,-rpath -Wl,/srv/sw/nco-4.6.1/lib -Wl,-rpath -Wl,/srv/sw/netcdf-4.4.1/lib
20-May-2017 13:46:15 gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../..   -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include  -I/usr/include  -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT ncra.o -MD -MP -MF .deps/ncra.Tpo -c -o ncra.o ncra.c
20-May-2017 13:46:15 mv -f .deps/ncra.Tpo .deps/ncra.Po
20-May-2017 13:46:15 /bin/bash ../../libtool --tag=CXX  --tag=CC   --mode=link gcc -std=gnu99  -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE  -L/srv/sw/netcdf-4.4.1/lib -lnetcdf  -L/srv/sw/netcdf-4.4.1/lib  -L/usr/lib/x86_64-linux-gnu -o ncra ncra.o libnco.la -ludunits2 -lexpat -lm -lnetcdf -lnetcdf  -ludunits2
20-May-2017 13:46:16 libtool: link: gcc -std=gnu99 -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -o .libs/ncra ncra.o  -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu ./.libs/libnco.so /usr/lib/x86_64-linux-gnu/libexpat.so -lm /srv/sw/netcdf-4.4.1/lib/libnetcdf.so -ludunits2 -fopenmp -Wl,-rpath -Wl,/srv/sw/nco-4.6.1/lib -Wl,-rpath -Wl,/srv/sw/netcdf-4.4.1/lib
20-May-2017 13:46:16 gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../..   -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include  -I/usr/include  -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT ncrename.o -MD -MP -MF .deps/ncrename.Tpo -c -o ncrename.o ncrename.c
20-May-2017 13:46:16 mv -f .deps/ncrename.Tpo .deps/ncrename.Po
20-May-2017 13:46:16 /bin/bash ../../libtool --tag=CXX  --tag=CC   --mode=link gcc -std=gnu99  -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE  -L/srv/sw/netcdf-4.4.1/lib -lnetcdf  -L/srv/sw/netcdf-4.4.1/lib  -L/usr/lib/x86_64-linux-gnu -o ncrename ncrename.o libnco.la -ludunits2 -lexpat -lm -lnetcdf -lnetcdf  -ludunits2
20-May-2017 13:46:16 libtool: link: gcc -std=gnu99 -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -o .libs/ncrename ncrename.o  -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu ./.libs/libnco.so /usr/lib/x86_64-linux-gnu/libexpat.so -lm /srv/sw/netcdf-4.4.1/lib/libnetcdf.so -ludunits2 -fopenmp -Wl,-rpath -Wl,/srv/sw/nco-4.6.1/lib -Wl,-rpath -Wl,/srv/sw/netcdf-4.4.1/lib
20-May-2017 13:46:16 make[3]: Leaving directory '/srv/downloads/nco-4.6.1/src/nco'
20-May-2017 13:46:16 Making all in nco_c++
20-May-2017 13:46:16 make[3]: Entering directory '/srv/downloads/nco-4.6.1/src/nco_c++'
20-May-2017 13:46:16 /bin/bash ../../libtool --tag=CXX  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../..  -DABORT_ON_ERROR -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include  -I/usr/include  -g -O2 -MT libnco_c___la-nco_att.lo -MD -MP -MF .deps/libnco_c___la-nco_att.Tpo -c -o libnco_c___la-nco_att.lo `test -f 'nco_att.cc' || echo './'`nco_att.cc
20-May-2017 13:46:16 libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT libnco_c___la-nco_att.lo -MD -MP -MF .deps/libnco_c___la-nco_att.Tpo -c nco_att.cc  -fPIC -DPIC -o .libs/libnco_c___la-nco_att.o
20-May-2017 13:46:17 libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT libnco_c___la-nco_att.lo -MD -MP -MF .deps/libnco_c___la-nco_att.Tpo -c nco_att.cc -o libnco_c___la-nco_att.o >/dev/null 2>&1
20-May-2017 13:46:17 mv -f .deps/libnco_c___la-nco_att.Tpo .deps/libnco_c___la-nco_att.Plo
20-May-2017 13:46:17 /bin/bash ../../libtool --tag=CXX  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../..  -DABORT_ON_ERROR -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include  -I/usr/include  -g -O2 -MT libnco_c___la-nco_dmn.lo -MD -MP -MF .deps/libnco_c___la-nco_dmn.Tpo -c -o libnco_c___la-nco_dmn.lo `test -f 'nco_dmn.cc' || echo './'`nco_dmn.cc
20-May-2017 13:46:17 libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT libnco_c___la-nco_dmn.lo -MD -MP -MF .deps/libnco_c___la-nco_dmn.Tpo -c nco_dmn.cc  -fPIC -DPIC -o .libs/libnco_c___la-nco_dmn.o
20-May-2017 13:46:18 libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT libnco_c___la-nco_dmn.lo -MD -MP -MF .deps/libnco_c___la-nco_dmn.Tpo -c nco_dmn.cc -o libnco_c___la-nco_dmn.o >/dev/null 2>&1
20-May-2017 13:46:18 mv -f .deps/libnco_c___la-nco_dmn.Tpo .deps/libnco_c___la-nco_dmn.Plo
20-May-2017 13:46:18 /bin/bash ../../libtool --tag=CXX  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../..  -DABORT_ON_ERROR -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include  -I/usr/include  -g -O2 -MT libnco_c___la-nco_fl.lo -MD -MP -MF .deps/libnco_c___la-nco_fl.Tpo -c -o libnco_c___la-nco_fl.lo `test -f 'nco_fl.cc' || echo './'`nco_fl.cc
20-May-2017 13:46:18 libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT libnco_c___la-nco_fl.lo -MD -MP -MF .deps/libnco_c___la-nco_fl.Tpo -c nco_fl.cc  -fPIC -DPIC -o .libs/libnco_c___la-nco_fl.o
20-May-2017 13:46:18 libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT libnco_c___la-nco_fl.lo -MD -MP -MF .deps/libnco_c___la-nco_fl.Tpo -c nco_fl.cc -o libnco_c___la-nco_fl.o >/dev/null 2>&1
20-May-2017 13:46:19 mv -f .deps/libnco_c___la-nco_fl.Tpo .deps/libnco_c___la-nco_fl.Plo
20-May-2017 13:46:19 /bin/bash ../../libtool --tag=CXX  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../..  -DABORT_ON_ERROR -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include  -I/usr/include  -g -O2 -MT libnco_c___la-nco_hgh.lo -MD -MP -MF .deps/libnco_c___la-nco_hgh.Tpo -c -o libnco_c___la-nco_hgh.lo `test -f 'nco_hgh.cc' || echo './'`nco_hgh.cc
20-May-2017 13:46:19 libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT libnco_c___la-nco_hgh.lo -MD -MP -MF .deps/libnco_c___la-nco_hgh.Tpo -c nco_hgh.cc  -fPIC -DPIC -o .libs/libnco_c___la-nco_hgh.o
20-May-2017 13:46:19 libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT libnco_c___la-nco_hgh.lo -MD -MP -MF .deps/libnco_c___la-nco_hgh.Tpo -c nco_hgh.cc -o libnco_c___la-nco_hgh.o >/dev/null 2>&1
20-May-2017 13:46:19 mv -f .deps/libnco_c___la-nco_hgh.Tpo .deps/libnco_c___la-nco_hgh.Plo
20-May-2017 13:46:19 /bin/bash ../../libtool --tag=CXX  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../..  -DABORT_ON_ERROR -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include  -I/usr/include  -g -O2 -MT libnco_c___la-nco_utl.lo -MD -MP -MF .deps/libnco_c___la-nco_utl.Tpo -c -o libnco_c___la-nco_utl.lo `test -f 'nco_utl.cc' || echo './'`nco_utl.cc
20-May-2017 13:46:19 libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT libnco_c___la-nco_utl.lo -MD -MP -MF .deps/libnco_c___la-nco_utl.Tpo -c nco_utl.cc  -fPIC -DPIC -o .libs/libnco_c___la-nco_utl.o
20-May-2017 13:46:20 libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT libnco_c___la-nco_utl.lo -MD -MP -MF .deps/libnco_c___la-nco_utl.Tpo -c nco_utl.cc -o libnco_c___la-nco_utl.o >/dev/null 2>&1
20-May-2017 13:46:20 mv -f .deps/libnco_c___la-nco_utl.Tpo .deps/libnco_c___la-nco_utl.Plo
20-May-2017 13:46:20 /bin/bash ../../libtool --tag=CXX  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../..  -DABORT_ON_ERROR -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include  -I/usr/include  -g -O2 -MT libnco_c___la-nco_var.lo -MD -MP -MF .deps/libnco_c___la-nco_var.Tpo -c -o libnco_c___la-nco_var.lo `test -f 'nco_var.cc' || echo './'`nco_var.cc
20-May-2017 13:46:20 libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT libnco_c___la-nco_var.lo -MD -MP -MF .deps/libnco_c___la-nco_var.Tpo -c nco_var.cc  -fPIC -DPIC -o .libs/libnco_c___la-nco_var.o
20-May-2017 13:46:22 libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT libnco_c___la-nco_var.lo -MD -MP -MF .deps/libnco_c___la-nco_var.Tpo -c nco_var.cc -o libnco_c___la-nco_var.o >/dev/null 2>&1
20-May-2017 13:46:23 mv -f .deps/libnco_c___la-nco_var.Tpo .deps/libnco_c___la-nco_var.Plo
20-May-2017 13:46:23 /bin/bash ../../libtool --tag=CXX  --tag=CXX   --mode=link g++  -g -O2 -release 4.6.1-beta01 -L/srv/sw/netcdf-4.4.1/lib -lnetcdf  -L/srv/sw/netcdf-4.4.1/lib  -L/usr/lib/x86_64-linux-gnu -o libnco_c++.la -rpath /srv/sw/nco-4.6.1/lib libnco_c___la-nco_att.lo libnco_c___la-nco_dmn.lo libnco_c___la-nco_fl.lo libnco_c___la-nco_hgh.lo libnco_c___la-nco_utl.lo libnco_c___la-nco_var.lo  -ludunits2 -lexpat -lm -lnetcdf -lnetcdf  -ludunits2
20-May-2017 13:46:23 libtool: link: g++  -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.9/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.9/crtbeginS.o  .libs/libnco_c___la-nco_att.o .libs/libnco_c___la-nco_dmn.o .libs/libnco_c___la-nco_fl.o .libs/libnco_c___la-nco_hgh.o .libs/libnco_c___la-nco_utl.o .libs/libnco_c___la-nco_var.o   -Wl,-rpath -Wl,/srv/sw/netcdf-4.4.1/lib -Wl,-rpath -Wl,/srv/sw/netcdf-4.4.1/lib -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu /usr/lib/x86_64-linux-gnu/libexpat.so /srv/sw/netcdf-4.4.1/lib/libnetcdf.so -ludunits2 -L/usr/lib/gcc/x86_64-linux-gnu/4.9 -L/usr/lib/gcc/x86_64-linux-gnu/4.9/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.9/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.9/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.9/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.9/../../../x86_64-linux-gnu/crtn.o  -O2   -Wl,-soname -Wl,libnco_c++-4.6.1-beta01.so -o .libs/libnco_c++-4.6.1-beta01.so
20-May-2017 13:46:23 libtool: link: (cd ".libs" && rm -f "libnco_c++.so" && ln -s "libnco_c++-4.6.1-beta01.so" "libnco_c++.so")
20-May-2017 13:46:23 libtool: link: ar cru .libs/libnco_c++.a  libnco_c___la-nco_att.o libnco_c___la-nco_dmn.o libnco_c___la-nco_fl.o libnco_c___la-nco_hgh.o libnco_c___la-nco_utl.o libnco_c___la-nco_var.o
20-May-2017 13:46:23 libtool: link: ranlib .libs/libnco_c++.a
20-May-2017 13:46:24 libtool: link: ( cd ".libs" && rm -f "libnco_c++.la" && ln -s "../libnco_c++.la" "libnco_c++.la" )
20-May-2017 13:46:24 make[3]: Leaving directory '/srv/downloads/nco-4.6.1/src/nco_c++'
20-May-2017 13:46:24 Making all in nco++
20-May-2017 13:46:24 make[3]: Entering directory '/srv/downloads/nco-4.6.1/src/nco++'
20-May-2017 13:46:24 g++ -DHAVE_CONFIG_H -I. -I../..  -I./ -I../nco -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include  -I/usr/include  -g -O2 -MT Invoke.o -MD -MP -MF .deps/Invoke.Tpo -c -o Invoke.o Invoke.cc
20-May-2017 13:46:25 mv -f .deps/Invoke.Tpo .deps/Invoke.Po
20-May-2017 13:46:25 g++ -DHAVE_CONFIG_H -I. -I../..  -I./ -I../nco -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include  -I/usr/include  -g -O2 -MT ncap2.o -MD -MP -MF .deps/ncap2.Tpo -c -o ncap2.o ncap2.cc
20-May-2017 13:46:27 mv -f .deps/ncap2.Tpo .deps/ncap2.Po
20-May-2017 13:46:27 g++ -DHAVE_CONFIG_H -I. -I../..  -I./ -I../nco -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include  -I/usr/include  -g -O2 -MT ncap2_utl.o -MD -MP -MF .deps/ncap2_utl.Tpo -c -o ncap2_utl.o ncap2_utl.cc
20-May-2017 13:46:36 mv -f .deps/ncap2_utl.Tpo .deps/ncap2_utl.Po
20-May-2017 13:46:36 g++ -DHAVE_CONFIG_H -I. -I../..  -I./ -I../nco -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include  -I/usr/include  -g -O2 -MT sdo_utl.o -MD -MP -MF .deps/sdo_utl.Tpo -c -o sdo_utl.o sdo_utl.cc
20-May-2017 13:46:36 mv -f .deps/sdo_utl.Tpo .deps/sdo_utl.Po
20-May-2017 13:46:36 g++ -DHAVE_CONFIG_H -I. -I../..  -I./ -I../nco -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include  -I/usr/include  -g -O2 -MT sym_cls.o -MD -MP -MF .deps/sym_cls.Tpo -c -o sym_cls.o sym_cls.cc
20-May-2017 13:46:36 mv -f .deps/sym_cls.Tpo .deps/sym_cls.Po
20-May-2017 13:46:36 g++ -DHAVE_CONFIG_H -I. -I../..  -I./ -I../nco -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include  -I/usr/include  -g -O2 -MT fmc_cls.o -MD -MP -MF .deps/fmc_cls.Tpo -c -o fmc_cls.o fmc_cls.cc
20-May-2017 13:46:37 mv -f .deps/fmc_cls.Tpo .deps/fmc_cls.Po
20-May-2017 13:46:37 g++ -DHAVE_CONFIG_H -I. -I../..  -I./ -I../nco -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include  -I/usr/include  -g -O2 -MT fmc_all_cls.o -MD -MP -MF .deps/fmc_all_cls.Tpo -c -o fmc_all_cls.o fmc_all_cls.cc
20-May-2017 13:46:45 mv -f .deps/fmc_all_cls.Tpo .deps/fmc_all_cls.Po
20-May-2017 13:46:45 g++ -DHAVE_CONFIG_H -I. -I../..  -I./ -I../nco -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include  -I/usr/include  -g -O2 -MT fmc_gsl_cls.o -MD -MP -MF .deps/fmc_gsl_cls.Tpo -c -o fmc_gsl_cls.o fmc_gsl_cls.cc
20-May-2017 13:46:45 mv -f .deps/fmc_gsl_cls.Tpo .deps/fmc_gsl_cls.Po
20-May-2017 13:46:45 g++ -DHAVE_CONFIG_H -I. -I../..  -I./ -I../nco -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include  -I/usr/include  -g -O2 -MT prs_cls.o -MD -MP -MF .deps/prs_cls.Tpo -c -o prs_cls.o prs_cls.cc
20-May-2017 13:46:46 mv -f .deps/prs_cls.Tpo .deps/prs_cls.Po
20-May-2017 13:46:46 g++ -DHAVE_CONFIG_H -I. -I../..  -I./ -I../nco -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include  -I/usr/include  -g -O2 -MT NcapVar.o -MD -MP -MF .deps/NcapVar.Tpo -c -o NcapVar.o NcapVar.cc
20-May-2017 13:46:46 mv -f .deps/NcapVar.Tpo .deps/NcapVar.Po
20-May-2017 13:46:46 g++ -DHAVE_CONFIG_H -I. -I../..  -I./ -I../nco -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include  -I/usr/include  -g -O2 -MT NcapVarVector.o -MD -MP -MF .deps/NcapVarVector.Tpo -c -o NcapVarVector.o NcapVarVector.cc
20-May-2017 13:46:47 mv -f .deps/NcapVarVector.Tpo .deps/NcapVarVector.Po
20-May-2017 13:46:47 g++ -DHAVE_CONFIG_H -I. -I../..  -I./ -I../nco -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include  -I/usr/include  -g -O2 -MT ncoLexer.o -MD -MP -MF .deps/ncoLexer.Tpo -c -o ncoLexer.o ncoLexer.cpp
20-May-2017 13:46:50 mv -f .deps/ncoLexer.Tpo .deps/ncoLexer.Po
20-May-2017 13:46:50 g++ -DHAVE_CONFIG_H -I. -I../..  -I./ -I../nco -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include  -I/usr/include  -g -O2 -MT ncoParser.o -MD -MP -MF .deps/ncoParser.Tpo -c -o ncoParser.o ncoParser.cpp
20-May-2017 13:46:53 mv -f .deps/ncoParser.Tpo .deps/ncoParser.Po
20-May-2017 13:46:53 g++ -DHAVE_CONFIG_H -I. -I../..  -I./ -I../nco -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include  -I/usr/include  -g -O2 -MT ncoTree.o -MD -MP -MF .deps/ncoTree.Tpo -c -o ncoTree.o ncoTree.cpp
20-May-2017 13:47:05 mv -f .deps/ncoTree.Tpo .deps/ncoTree.Po
20-May-2017 13:47:05 gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../..  -I./ -I../nco -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include  -I/usr/include  -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_gsl.o -MD -MP -MF .deps/nco_gsl.Tpo -c -o nco_gsl.o nco_gsl.c
20-May-2017 13:47:05 mv -f .deps/nco_gsl.Tpo .deps/nco_gsl.Po
20-May-2017 13:47:05 /bin/bash ../../libtool --tag=CXX  --tag=CXX   --mode=link g++  -g -O2 -L../nco -lnco -lantlr -L/srv/sw/netcdf-4.4.1/lib -lnetcdf  -L/srv/sw/netcdf-4.4.1/lib  -L/usr/lib/x86_64-linux-gnu -o ncap2 Invoke.o ncap2.o ncap2_utl.o sdo_utl.o sym_cls.o fmc_cls.o fmc_all_cls.o fmc_gsl_cls.o prs_cls.o NcapVar.o NcapVarVector.o ncoLexer.o ncoParser.o ncoTree.o nco_gsl.o  -ludunits2 -lexpat -lm -lnetcdf -lnetcdf  -ludunits2
20-May-2017 13:47:06 libtool: link: g++ -g -O2 -o .libs/ncap2 Invoke.o ncap2.o ncap2_utl.o sdo_utl.o sym_cls.o fmc_cls.o fmc_all_cls.o fmc_gsl_cls.o prs_cls.o NcapVar.o NcapVarVector.o ncoLexer.o ncoParser.o ncoTree.o nco_gsl.o  -L../nco /srv/downloads/nco-4.6.1/src/nco/.libs/libnco.so -lantlr -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu /usr/lib/x86_64-linux-gnu/libexpat.so -lm /srv/sw/netcdf-4.4.1/lib/libnetcdf.so -ludunits2 -fopenmp -Wl,-rpath -Wl,/srv/sw/nco-4.6.1/lib -Wl,-rpath -Wl,/srv/sw/netcdf-4.4.1/lib
20-May-2017 13:47:06 make[3]: Leaving directory '/srv/downloads/nco-4.6.1/src/nco++'
20-May-2017 13:47:06 make[3]: Entering directory '/srv/downloads/nco-4.6.1/src'
20-May-2017 13:47:06 make[3]: Nothing to be done for 'all-am'.
20-May-2017 13:47:06 make[3]: Leaving directory '/srv/downloads/nco-4.6.1/src'
20-May-2017 13:47:06 make[2]: Leaving directory '/srv/downloads/nco-4.6.1/src'
20-May-2017 13:47:06 Making all in man
20-May-2017 13:47:06 make[2]: Entering directory '/srv/downloads/nco-4.6.1/man'
20-May-2017 13:47:06 make[2]: Nothing to be done for 'all'.
20-May-2017 13:47:06 make[2]: Leaving directory '/srv/downloads/nco-4.6.1/man'
20-May-2017 13:47:06 make[2]: Entering directory '/srv/downloads/nco-4.6.1'
20-May-2017 13:47:06 make[2]: Leaving directory '/srv/downloads/nco-4.6.1'
20-May-2017 13:47:06 make[1]: Leaving directory '/srv/downloads/nco-4.6.1'
20-May-2017 13:47:06 Making install in data
20-May-2017 13:47:06 make[1]: Entering directory '/srv/downloads/nco-4.6.1/data'
20-May-2017 13:47:06 make[2]: Entering directory '/srv/downloads/nco-4.6.1/data'
20-May-2017 13:47:06 /bin/mkdir -p '/srv/sw/nco-4.6.1/bin'
20-May-2017 13:47:06 /usr/bin/install -c ncclimo ncremap '/srv/sw/nco-4.6.1/bin'
20-May-2017 13:47:06 make[2]: Nothing to be done for 'install-data-am'.
20-May-2017 13:47:06 make[2]: Leaving directory '/srv/downloads/nco-4.6.1/data'
20-May-2017 13:47:06 make[1]: Leaving directory '/srv/downloads/nco-4.6.1/data'
20-May-2017 13:47:06 Making install in src
20-May-2017 13:47:06 make[1]: Entering directory '/srv/downloads/nco-4.6.1/src'
20-May-2017 13:47:06 Making install in nco
20-May-2017 13:47:06 make[2]: Entering directory '/srv/downloads/nco-4.6.1/src/nco'
20-May-2017 13:47:06 make[3]: Entering directory '/srv/downloads/nco-4.6.1/src/nco'
20-May-2017 13:47:06 /bin/mkdir -p '/srv/sw/nco-4.6.1/lib'
20-May-2017 13:47:06 /bin/bash ../../libtool --tag=CXX   --mode=install /usr/bin/install -c   libnco.la '/srv/sw/nco-4.6.1/lib'
20-May-2017 13:47:06 libtool: install: /usr/bin/install -c .libs/libnco-4.6.1-beta01.so /srv/sw/nco-4.6.1/lib/libnco-4.6.1-beta01.so
20-May-2017 13:47:06 libtool: install: (cd /srv/sw/nco-4.6.1/lib && { ln -s -f libnco-4.6.1-beta01.so libnco.so || { rm -f libnco.so && ln -s libnco-4.6.1-beta01.so libnco.so; }; })
20-May-2017 13:47:06 libtool: install: /usr/bin/install -c .libs/libnco.lai /srv/sw/nco-4.6.1/lib/libnco.la
20-May-2017 13:47:06 libtool: install: /usr/bin/install -c .libs/libnco.a /srv/sw/nco-4.6.1/lib/libnco.a
20-May-2017 13:47:06 libtool: install: chmod 644 /srv/sw/nco-4.6.1/lib/libnco.a
20-May-2017 13:47:06 libtool: install: ranlib /srv/sw/nco-4.6.1/lib/libnco.a
20-May-2017 13:47:06 libtool: finish: PATH="/srv/sw/gdal/bin:/srv/sw/proj4/bin:/srv/sw/geos/bin:/srv/sw/netcdf-4.4.1/bin:/srv/sw/hdf5-1.8.17/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/sbin" ldconfig -n /srv/sw/nco-4.6.1/lib
20-May-2017 13:47:06 ----------------------------------------------------------------------
20-May-2017 13:47:06 Libraries have been installed in:
20-May-2017 13:47:06    /srv/sw/nco-4.6.1/lib
20-May-2017 13:47:06
20-May-2017 13:47:06 If you ever happen to want to link against installed libraries
20-May-2017 13:47:06 in a given directory, LIBDIR, you must either use libtool, and
20-May-2017 13:47:06 specify the full pathname of the library, or use the `-LLIBDIR'
20-May-2017 13:47:06 flag during linking and do at least one of the following:
20-May-2017 13:47:06    - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
20-May-2017 13:47:06      during execution
20-May-2017 13:47:06    - add LIBDIR to the `LD_RUN_PATH' environment variable
20-May-2017 13:47:06      during linking
20-May-2017 13:47:06    - use the `-Wl,-rpath -Wl,LIBDIR' linker flag
20-May-2017 13:47:06    - have your system administrator add LIBDIR to `/etc/ld.so.conf'
20-May-2017 13:47:06
20-May-2017 13:47:06 See any operating system documentation about shared libraries for
20-May-2017 13:47:06 more information, such as the ld(1) and ld.so(8) manual pages.
20-May-2017 13:47:06 ----------------------------------------------------------------------
20-May-2017 13:47:06 /bin/mkdir -p '/srv/sw/nco-4.6.1/bin'
20-May-2017 13:47:06   /bin/bash ../../libtool --tag=CXX   --mode=install /usr/bin/install -c ncatted ncbo ncecat ncflint ncks ncpdq ncra ncrename '/srv/sw/nco-4.6.1/bin'
20-May-2017 13:47:06 libtool: install: /usr/bin/install -c .libs/ncatted /srv/sw/nco-4.6.1/bin/ncatted
20-May-2017 13:47:06 libtool: install: /usr/bin/install -c .libs/ncbo /srv/sw/nco-4.6.1/bin/ncbo
20-May-2017 13:47:06 libtool: install: /usr/bin/install -c .libs/ncecat /srv/sw/nco-4.6.1/bin/ncecat
20-May-2017 13:47:06 libtool: install: /usr/bin/install -c .libs/ncflint /srv/sw/nco-4.6.1/bin/ncflint
20-May-2017 13:47:06 libtool: install: /usr/bin/install -c .libs/ncks /srv/sw/nco-4.6.1/bin/ncks
20-May-2017 13:47:06 libtool: install: /usr/bin/install -c .libs/ncpdq /srv/sw/nco-4.6.1/bin/ncpdq
20-May-2017 13:47:06 libtool: install: /usr/bin/install -c .libs/ncra /srv/sw/nco-4.6.1/bin/ncra
20-May-2017 13:47:06 libtool: install: /usr/bin/install -c .libs/ncrename /srv/sw/nco-4.6.1/bin/ncrename
20-May-2017 13:47:06 make  install-exec-hook
20-May-2017 13:47:06 make[4]: Entering directory '/srv/downloads/nco-4.6.1/src/nco'
20-May-2017 13:47:06 cd /srv/sw/nco-4.6.1/bin && ln -s -f ncbo ncdiff || (rm -f ncdiff && ln -s -f ncbo ncdiff)
20-May-2017 13:47:06 cd /srv/sw/nco-4.6.1/bin && ln -s -f ncra ncea || (rm -f ncea && ln -s -f ncra ncea)
20-May-2017 13:47:06 cd /srv/sw/nco-4.6.1/bin && ln -s -f ncra nces || (rm -f nces && ln -s -f ncra nces)
20-May-2017 13:47:06 cd /srv/sw/nco-4.6.1/bin && ln -s -f ncra ncrcat || (rm -f ncrcat && ln -s -f ncra ncrcat)
20-May-2017 13:47:06 make[4]: Leaving directory '/srv/downloads/nco-4.6.1/src/nco'
20-May-2017 13:47:06 make[3]: Nothing to be done for 'install-data-am'.
20-May-2017 13:47:06 make[3]: Leaving directory '/srv/downloads/nco-4.6.1/src/nco'
20-May-2017 13:47:06 make[2]: Leaving directory '/srv/downloads/nco-4.6.1/src/nco'
20-May-2017 13:47:06 Making install in nco_c++
20-May-2017 13:47:06 make[2]: Entering directory '/srv/downloads/nco-4.6.1/src/nco_c++'
20-May-2017 13:47:06 make[3]: Entering directory '/srv/downloads/nco-4.6.1/src/nco_c++'
20-May-2017 13:47:06 /bin/mkdir -p '/srv/sw/nco-4.6.1/lib'
20-May-2017 13:47:06 /bin/bash ../../libtool --tag=CXX   --mode=install /usr/bin/install -c   libnco_c++.la '/srv/sw/nco-4.6.1/lib'
20-May-2017 13:47:06 libtool: install: /usr/bin/install -c .libs/libnco_c++-4.6.1-beta01.so /srv/sw/nco-4.6.1/lib/libnco_c++-4.6.1-beta01.so
20-May-2017 13:47:06 libtool: install: (cd /srv/sw/nco-4.6.1/lib && { ln -s -f libnco_c++-4.6.1-beta01.so libnco_c++.so || { rm -f libnco_c++.so && ln -s libnco_c++-4.6.1-beta01.so libnco_c++.so; }; })
20-May-2017 13:47:06 libtool: install: /usr/bin/install -c .libs/libnco_c++.lai /srv/sw/nco-4.6.1/lib/libnco_c++.la
20-May-2017 13:47:06 libtool: install: /usr/bin/install -c .libs/libnco_c++.a /srv/sw/nco-4.6.1/lib/libnco_c++.a
20-May-2017 13:47:06 libtool: install: chmod 644 /srv/sw/nco-4.6.1/lib/libnco_c++.a
20-May-2017 13:47:06 libtool: install: ranlib /srv/sw/nco-4.6.1/lib/libnco_c++.a
20-May-2017 13:47:06 libtool: finish: PATH="/srv/sw/gdal/bin:/srv/sw/proj4/bin:/srv/sw/geos/bin:/srv/sw/netcdf-4.4.1/bin:/srv/sw/hdf5-1.8.17/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/sbin" ldconfig -n /srv/sw/nco-4.6.1/lib
20-May-2017 13:47:06 ----------------------------------------------------------------------
20-May-2017 13:47:06 Libraries have been installed in:
20-May-2017 13:47:06    /srv/sw/nco-4.6.1/lib
20-May-2017 13:47:06
20-May-2017 13:47:06 If you ever happen to want to link against installed libraries
20-May-2017 13:47:06 in a given directory, LIBDIR, you must either use libtool, and
20-May-2017 13:47:06 specify the full pathname of the library, or use the `-LLIBDIR'
20-May-2017 13:47:06 flag during linking and do at least one of the following:
20-May-2017 13:47:06    - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
20-May-2017 13:47:06      during execution
20-May-2017 13:47:06    - add LIBDIR to the `LD_RUN_PATH' environment variable
20-May-2017 13:47:06      during linking
20-May-2017 13:47:06    - use the `-Wl,-rpath -Wl,LIBDIR' linker flag
20-May-2017 13:47:06    - have your system administrator add LIBDIR to `/etc/ld.so.conf'
20-May-2017 13:47:06
20-May-2017 13:47:06 See any operating system documentation about shared libraries for
20-May-2017 13:47:06 more information, such as the ld(1) and ld.so(8) manual pages.
20-May-2017 13:47:06 ----------------------------------------------------------------------
20-May-2017 13:47:06 /bin/mkdir -p '/srv/sw/nco-4.6.1/include'
20-May-2017 13:47:06 /usr/bin/install -c -m 644 libnco_c++.hh nco_dmn.hh nco_hgh.hh nco_var.hh nco_att.hh nco_fl.hh nco_utl.hh '/srv/sw/nco-4.6.1/include'
20-May-2017 13:47:06 make[3]: Leaving directory '/srv/downloads/nco-4.6.1/src/nco_c++'
20-May-2017 13:47:06 make[2]: Leaving directory '/srv/downloads/nco-4.6.1/src/nco_c++'
20-May-2017 13:47:06 Making install in nco++
20-May-2017 13:47:06 make[2]: Entering directory '/srv/downloads/nco-4.6.1/src/nco++'
20-May-2017 13:47:06 make[3]: Entering directory '/srv/downloads/nco-4.6.1/src/nco++'
20-May-2017 13:47:06 /bin/mkdir -p '/srv/sw/nco-4.6.1/bin'
20-May-2017 13:47:06   /bin/bash ../../libtool --tag=CXX   --mode=install /usr/bin/install -c ncap2 '/srv/sw/nco-4.6.1/bin'
20-May-2017 13:47:06 libtool: install: /usr/bin/install -c .libs/ncap2 /srv/sw/nco-4.6.1/bin/ncap2
20-May-2017 13:47:06 make[3]: Nothing to be done for 'install-data-am'.
20-May-2017 13:47:06 make[3]: Leaving directory '/srv/downloads/nco-4.6.1/src/nco++'
20-May-2017 13:47:06 make[2]: Leaving directory '/srv/downloads/nco-4.6.1/src/nco++'
20-May-2017 13:47:06 make[2]: Entering directory '/srv/downloads/nco-4.6.1/src'
20-May-2017 13:47:06 make[3]: Entering directory '/srv/downloads/nco-4.6.1/src'
20-May-2017 13:47:06 make[3]: Nothing to be done for 'install-exec-am'.
20-May-2017 13:47:06 make[3]: Nothing to be done for 'install-data-am'.
20-May-2017 13:47:06 make[3]: Leaving directory '/srv/downloads/nco-4.6.1/src'
20-May-2017 13:47:06 make[2]: Leaving directory '/srv/downloads/nco-4.6.1/src'
20-May-2017 13:47:06 make[1]: Leaving directory '/srv/downloads/nco-4.6.1/src'
20-May-2017 13:47:06 Making install in man
20-May-2017 13:47:06 make[1]: Entering directory '/srv/downloads/nco-4.6.1/man'
20-May-2017 13:47:06 make[2]: Entering directory '/srv/downloads/nco-4.6.1/man'
20-May-2017 13:47:06 make[2]: Nothing to be done for 'install-exec-am'.
20-May-2017 13:47:06 /bin/mkdir -p '/srv/sw/nco-4.6.1/share/man/man1'
20-May-2017 13:47:06 /usr/bin/install -c -m 644 ncap.1 ncap2.1 ncatted.1 ncbo.1 ncclimo.1 nces.1 ncecat.1 ncflint.1 ncks.1 nco.1 ncra.1 ncremap.1 ncrename.1 ncpdq.1 ncrcat.1 ncwa.1 '/srv/sw/nco-4.6.1/share/man/man1'
20-May-2017 13:47:06 make[2]: Leaving directory '/srv/downloads/nco-4.6.1/man'
20-May-2017 13:47:06 make[1]: Leaving directory '/srv/downloads/nco-4.6.1/man'
20-May-2017 13:47:06 make[1]: Entering directory '/srv/downloads/nco-4.6.1'
20-May-2017 13:47:06 make[2]: Entering directory '/srv/downloads/nco-4.6.1'
20-May-2017 13:47:06 make[2]: Nothing to be done for 'install-exec-am'.
20-May-2017 13:47:06 make[2]: Nothing to be done for 'install-data-am'.
20-May-2017 13:47:06 make[2]: Leaving directory '/srv/downloads/nco-4.6.1'
20-May-2017 13:47:06 make[1]: Leaving directory '/srv/downloads/nco-4.6.1'
20-May-2017 13:47:07 ---> c1e1140b9350
20-May-2017 13:47:07 Removing intermediate container 6820aa6cefd7
20-May-2017 13:47:07 Step 18/31 : ENV PATH "/srv/sw/nco-4.6.1/bin:${PATH}" LD_LIBRARY_PATH "/srv/sw/nco-4.6.1/lib:${LD_LIBRARY_PATH}"
20-May-2017 13:47:08 ---> Running in 048224ed1372
20-May-2017 13:47:08 ---> ba3490edc027
20-May-2017 13:47:08 Removing intermediate container 048224ed1372
20-May-2017 13:47:08 Step 19/31 : ENV USERHOME "/home/ubuntu"
20-May-2017 13:47:08 ---> Running in 34096b377572
20-May-2017 13:47:08 ---> 77dd5e6da496
20-May-2017 13:47:08 Removing intermediate container 34096b377572
20-May-2017 13:47:08 Step 20/31 : WORKDIR "${USERHOME}"
20-May-2017 13:47:08 ---> 914a7aa83508
20-May-2017 13:47:08 Removing intermediate container c3bdcf0de334
20-May-2017 13:47:08 Step 21/31 : RUN cd ${USERHOME} &&     pip install pika urllib3 requests &&     CC=gcc CXX=g++ USE_SETUPCFG=0 HDF5_INCDIR=/srv/sw/hdf5-1.8.17/include HDF5_LIBDIR=/srv/sw/hdf5-1.8.17/lib NETCDF4_INCDIR=/srv/sw/netcdf-4.4.1/include NETCDF4_LIBDIR=/srv/sw/netcdf-4.4.1/lib pip install netCDF4 &&     pip install git+https://opensource.ncsa.illinois.edu/stash/scm/cats/pyclowder.git
20-May-2017 13:47:08 ---> Running in e4a52ff360f0
20-May-2017 13:47:09 Downloading/unpacking pika
20-May-2017 13:47:10 Requirement already satisfied (use --upgrade to upgrade): urllib3 in /usr/lib/python2.7/dist-packages
20-May-2017 13:47:10 Requirement already satisfied (use --upgrade to upgrade): requests in /usr/lib/python2.7/dist-packages
20-May-2017 13:47:10 Installing collected packages: pika
20-May-2017 13:47:10 Successfully installed pika
20-May-2017 13:47:10 Cleaning up...
20-May-2017 13:47:10 Downloading/unpacking netCDF4
20-May-2017 13:47:11   Running setup.py (path:/tmp/pip-build-2kVEHI/netCDF4/setup.py) egg_info for package netCDF4
20-May-2017 13:47:11     Package hdf5 was not found in the pkg-config search path.
20-May-2017 13:47:11     Perhaps you should add the directory containing `hdf5.pc'
20-May-2017 13:47:11     to the PKG_CONFIG_PATH environment variable
20-May-2017 13:47:11     No package 'hdf5' found
20-May-2017 13:47:11     using netcdf library version 4.4.1
20-May-2017 13:47:11    
20-May-2017 13:47:11     warning: manifest_maker: MANIFEST.in, line 4: 'recursive-include' expects <dir> <pattern1> <pattern2> ...
20-May-2017 13:47:11    
20-May-2017 13:47:11 Requirement already satisfied (use --upgrade to upgrade): numpy>=1.7 in /usr/lib/python2.7/dist-packages (from netCDF4)
20-May-2017 13:47:11 Installing collected packages: netCDF4
20-May-2017 13:47:11   Running setup.py install for netCDF4
20-May-2017 13:47:11     Package hdf5 was not found in the pkg-config search path.
20-May-2017 13:47:11     Perhaps you should add the directory containing `hdf5.pc'
20-May-2017 13:47:11     to the PKG_CONFIG_PATH environment variable
20-May-2017 13:47:11     No package 'hdf5' found
20-May-2017 13:47:11     using netcdf library version 4.4.1
20-May-2017 13:47:11     building 'netCDF4._netCDF4' extension
20-May-2017 13:47:11     gcc -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/hdf5-1.8.17/include -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c netCDF4/_netCDF4.c -o build/temp.linux-x86_64-2.7/netCDF4/_netCDF4.o
20-May-2017 13:47:12     In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1761:0,
20-May-2017 13:47:12                      from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:17,
20-May-2017 13:47:12                      from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
20-May-2017 13:47:12                      from netCDF4/_netCDF4.c:267:
20-May-2017 13:47:12     /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
20-May-2017 13:47:12      #warning "Using deprecated NumPy API, disable it by " \
20-May-2017 13:47:12       ^
20-May-2017 13:47:12     netCDF4/_netCDF4.c: In function ‘__pyx_f_7netCDF4_8_netCDF4__set_att’:
20-May-2017 13:47:12     netCDF4/_netCDF4.c:6761:97: warning: passing argument 5 of ‘nc_put_att_string’ from incompatible pointer type
20-May-2017 13:47:12              __pyx_v_ierr = nc_put_att_string(__pyx_t_6, __pyx_v_varid, __pyx_v_attname, __pyx_t_10, __pyx_v_string_ptrs);
20-May-2017 13:47:12                                                                                                      ^
20-May-2017 13:47:12     In file included from netCDF4/_netCDF4.c:266:0:
20-May-2017 13:47:12     /srv/sw/netcdf-4.4.1/include/netcdf.h:1002:1: note: expected ‘const char **’ but argument is of type ‘char **’
20-May-2017 13:47:12      nc_put_att_string(int ncid, int varid, const char *name,
20-May-2017 13:47:12      ^
20-May-2017 13:47:12     netCDF4/_netCDF4.c:7171:93: warning: passing argument 5 of ‘nc_put_att_string’ from incompatible pointer type
20-May-2017 13:47:12                  __pyx_v_ierr = nc_put_att_string(__pyx_t_14, __pyx_v_varid, __pyx_v_attname, 1, (&__pyx_v_datstring));
20-May-2017 13:47:12                                                                                                  ^
20-May-2017 13:47:12     In file included from netCDF4/_netCDF4.c:266:0:
20-May-2017 13:47:12     /srv/sw/netcdf-4.4.1/include/netcdf.h:1002:1: note: expected ‘const char **’ but argument is of type ‘char **’
20-May-2017 13:47:12      nc_put_att_string(int ncid, int varid, const char *name,
20-May-2017 13:47:12      ^
20-May-2017 13:47:26     netCDF4/_netCDF4.c: In function ‘__pyx_f_7netCDF4_8_netCDF4__get_types’:
20-May-2017 13:47:26     netCDF4/_netCDF4.c:8683:5: warning: ‘__pyx_v_typeids’ may be used uninitialized in this function [-Wmaybe-uninitialized]
20-May-2017 13:47:26          free(__pyx_v_typeids);
20-May-2017 13:47:26          ^
20-May-2017 13:47:32     netCDF4/_netCDF4.c: In function ‘__pyx_pw_7netCDF4_8_netCDF4_8Variable_1__init__’:
20-May-2017 13:47:32     netCDF4/_netCDF4.c:28371:20: warning: ‘__pyx_v_dimids’ may be used uninitialized in this function [-Wmaybe-uninitialized]
20-May-2017 13:47:32            __pyx_v_ierr = nc_def_var(__pyx_v_self->_grpid, __pyx_v_varname, __pyx_v_xtype, __pyx_v_ndims, __pyx_v_dimids, (&__pyx_v_self->_varid));
20-May-2017 13:47:32                         ^
20-May-2017 13:47:32     netCDF4/_netCDF4.c:26974:8: note: ‘__pyx_v_dimids’ was declared here
20-May-2017 13:47:32        int *__pyx_v_dimids;
20-May-2017 13:47:32             ^
20-May-2017 13:47:45     x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-x86_64-2.7/netCDF4/_netCDF4.o -L/srv/sw/netcdf-4.4.1/lib -L/srv/sw/hdf5-1.8.17/lib -Wl,-R/srv/sw/netcdf-4.4.1/lib -Wl,-R/srv/sw/hdf5-1.8.17/lib -lnetcdf -lhdf5_hl -lhdf5 -lz -o build/lib.linux-x86_64-2.7/netCDF4/_netCDF4.so
20-May-2017 13:47:45     building 'netcdftime._netcdftime' extension
20-May-2017 13:47:45     gcc -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/include/python2.7 -c netcdftime/_netcdftime.c -o build/temp.linux-x86_64-2.7/netcdftime/_netcdftime.o
20-May-2017 13:47:59     x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-x86_64-2.7/netcdftime/_netcdftime.o -o build/lib.linux-x86_64-2.7/netcdftime/_netcdftime.so
20-May-2017 13:47:59    
20-May-2017 13:47:59     warning: manifest_maker: MANIFEST.in, line 4: 'recursive-include' expects <dir> <pattern1> <pattern2> ...
20-May-2017 13:47:59    
20-May-2017 13:48:00     Installing ncinfo script to /usr/local/bin
20-May-2017 13:48:00     Installing nc4tonc3 script to /usr/local/bin
20-May-2017 13:48:00     Installing nc3tonc4 script to /usr/local/bin
20-May-2017 13:48:00 Successfully installed netCDF4
20-May-2017 13:48:00 Cleaning up...
20-May-2017 13:48:00 Downloading/unpacking git+https://opensource.ncsa.illinois.edu/stash/scm/cats/pyclowder.git
20-May-2017 13:48:00   Cloning https://opensource.ncsa.illinois.edu/stash/scm/cats/pyclowder.git to /tmp/pip-cIwJJG-build
20-May-2017 13:48:08   Running setup.py (path:/tmp/pip-cIwJJG-build/setup.py) egg_info for package from git+https://opensource.ncsa.illinois.edu/stash/scm/cats/pyclowder.git
20-May-2017 13:48:08    
20-May-2017 13:48:08 Installing collected packages: pyclowder
20-May-2017 13:48:08   Running setup.py install for pyclowder
20-May-2017 13:48:08    
20-May-2017 13:48:08 Successfully installed pyclowder
20-May-2017 13:48:08 Cleaning up...
20-May-2017 13:48:08 ---> 4dc6e3476dcd
20-May-2017 13:48:08 Removing intermediate container e4a52ff360f0
20-May-2017 13:48:08 Step 22/31 : ENV INPUTDIR "${USERHOME}/input"
20-May-2017 13:48:09 ---> Running in 2449e9eaf5a2
20-May-2017 13:48:09 ---> 39669791000e
20-May-2017 13:48:09 Removing intermediate container 2449e9eaf5a2
20-May-2017 13:48:09 Step 23/31 : RUN mkdir -p "${INPUTDIR}" &&     mkdir -p "${USERHOME}/logs"
20-May-2017 13:48:09 ---> Running in a2191626199b
20-May-2017 13:48:10 ---> 08b0c7b320b1
20-May-2017 13:48:10 Removing intermediate container a2191626199b
20-May-2017 13:48:10 Step 24/31 : USER root
20-May-2017 13:48:10 ---> Running in 3b95ed8648c8
20-May-2017 13:48:10 ---> d106e2b315bb
20-May-2017 13:48:10 Removing intermediate container 3b95ed8648c8
20-May-2017 13:48:10 Step 25/31 : RUN /bin/sed -i -e 's/^\([^#]*Scripts=\)/#\1/' -e 's/^#\(ShellScripts=\)/\1/' /home/polyglot/polyglot/SoftwareServer.conf
20-May-2017 13:48:10 ---> Running in 41f5c528d1b3
20-May-2017 13:48:11 ---> 947be154c926
20-May-2017 13:48:11 Removing intermediate container 41f5c528d1b3
20-May-2017 13:48:11 Step 26/31 : RUN echo "hyperspectral" > /home/polyglot/polyglot/scripts/sh/.aliases.txt
20-May-2017 13:48:11 ---> Running in 5472b637c850
20-May-2017 13:48:11 ---> 25b88fd3b2b2
20-May-2017 13:48:11 Removing intermediate container 5472b637c850
20-May-2017 13:48:11 Step 27/31 : COPY hyperspectral_workflow.sh batch_launcher.sh *.py *.nc *.nco /home/polyglot/polyglot/scripts/sh/auxiliary/
20-May-2017 13:48:12 ---> 3b6b1597d2ca
20-May-2017 13:48:12 Removing intermediate container 2004002a6a35
20-May-2017 13:48:12 Step 28/31 : COPY hyperspectral_convert.sh /home/polyglot/polyglot/scripts/sh/
20-May-2017 13:48:12 ---> 67a7f6a6adfc
20-May-2017 13:48:12 Removing intermediate container 2a7cee322a54
20-May-2017 13:48:12 Step 29/31 : RUN chown polyglot /home/polyglot/polyglot/scripts/sh/hyperspectral_convert.sh &&   chmod +x /home/polyglot/polyglot/scripts/sh/hyperspectral_convert.sh
20-May-2017 13:48:12 ---> Running in 76a11a5b6ece
20-May-2017 13:48:13 ---> 06211099bde0
20-May-2017 13:48:13 Removing intermediate container 76a11a5b6ece
20-May-2017 13:48:13 Step 30/31 : RUN chmod +x /home/polyglot/polyglot/scripts/sh/auxiliary/hyperspectral_workflow.sh
20-May-2017 13:48:13 ---> Running in 2c400506b2f2
20-May-2017 13:48:14 ---> face1b65daca
20-May-2017 13:48:14 Removing intermediate container 2c400506b2f2
20-May-2017 13:48:14 Step 31/31 : CMD softwareserver
20-May-2017 13:48:14 ---> Running in f3bb11b41026
20-May-2017 13:48:14 ---> 2495a74f02e1
20-May-2017 13:48:15 Removing intermediate container f3bb11b41026
20-May-2017 13:48:15 Successfully built 2495a74f02e1
20-May-2017 13:48:15 The push refers to a repository [docker.io/ncsapolyglot/converters-hyperspectral]
20-May-2017 13:48:15 e96adb621fc3: Preparing
20-May-2017 13:48:15 480be0d603dc: Preparing
20-May-2017 13:48:15 03faf5e4a5a2: Preparing
20-May-2017 13:48:15 fc411992aa2b: Preparing
20-May-2017 13:48:15 0e3289b63b56: Preparing
20-May-2017 13:48:15 71a584f32ba8: Preparing
20-May-2017 13:48:15 2f3fe5e29b20: Preparing
20-May-2017 13:48:15 cfb4298e86af: Preparing
20-May-2017 13:48:15 82b840a4fe73: Preparing
20-May-2017 13:48:15 1995560a5e0b: Preparing
20-May-2017 13:48:15 dc5d5a87e534: Preparing
20-May-2017 13:48:15 6cc09119986e: Preparing
20-May-2017 13:48:15 e1b8b4334242: Preparing
20-May-2017 13:48:15 981db737c880: Preparing
20-May-2017 13:48:15 5c1011e5eb86: Preparing
20-May-2017 13:48:15 51ef985f5f2d: Preparing
20-May-2017 13:48:15 15d3d5ab1759: Preparing
20-May-2017 13:48:15 0aac2aa81ee7: Preparing
20-May-2017 13:48:15 2e6275dc3089: Preparing
20-May-2017 13:48:15 40667869200b: Preparing
20-May-2017 13:48:15 8cfad5c2d90f: Preparing
20-May-2017 13:48:15 592e8cc170cf: Preparing
20-May-2017 13:48:15 e152466a133c: Preparing
20-May-2017 13:48:15 349781dbc7e4: Preparing
20-May-2017 13:48:15 d161109ec021: Preparing
20-May-2017 13:48:15 e1b8b4334242: Waiting
20-May-2017 13:48:15 836ba1f26fa6: Preparing
20-May-2017 13:48:15 981db737c880: Waiting
20-May-2017 13:48:15 37149424dccd: Preparing
20-May-2017 13:48:15 5c1011e5eb86: Waiting
20-May-2017 13:48:15 51ef985f5f2d: Waiting
20-May-2017 13:48:15 15d3d5ab1759: Waiting
20-May-2017 13:48:15 c59fa6cbcbd9: Preparing
20-May-2017 13:48:15 71a584f32ba8: Waiting
20-May-2017 13:48:15 8d4d1ab5ff74: Preparing
20-May-2017 13:48:15 0aac2aa81ee7: Waiting
20-May-2017 13:48:15 2f3fe5e29b20: Waiting
20-May-2017 13:48:15 e152466a133c: Waiting
20-May-2017 13:48:15 2e6275dc3089: Waiting
20-May-2017 13:48:15 349781dbc7e4: Waiting
20-May-2017 13:48:15 cfb4298e86af: Waiting
20-May-2017 13:48:15 40667869200b: Waiting
20-May-2017 13:48:15 82b840a4fe73: Waiting
20-May-2017 13:48:15 d161109ec021: Waiting
20-May-2017 13:48:15 8cfad5c2d90f: Waiting
20-May-2017 13:48:15 592e8cc170cf: Waiting
20-May-2017 13:48:15 836ba1f26fa6: Waiting
20-May-2017 13:48:15 8d4d1ab5ff74: Waiting
20-May-2017 13:48:15 1995560a5e0b: Waiting
20-May-2017 13:48:15 c59fa6cbcbd9: Waiting
20-May-2017 13:48:15 dc5d5a87e534: Waiting
20-May-2017 13:48:16 03faf5e4a5a2: Pushed
20-May-2017 13:48:16 fc411992aa2b: Pushed
20-May-2017 13:48:16 0e3289b63b56: Pushed
20-May-2017 13:48:16 480be0d603dc: Pushed
20-May-2017 13:48:17 e96adb621fc3: Pushed
20-May-2017 13:48:18 2f3fe5e29b20: Pushed
20-May-2017 13:48:18 cfb4298e86af: Pushed
20-May-2017 13:48:19 71a584f32ba8: Pushed
20-May-2017 13:48:23 dc5d5a87e534: Pushed
20-May-2017 13:48:25 e1b8b4334242: Pushed
20-May-2017 13:48:26 82b840a4fe73: Pushed
20-May-2017 13:48:27 51ef985f5f2d: Mounted from ncsapolyglot/polyglot
20-May-2017 13:48:27 15d3d5ab1759: Mounted from ncsapolyglot/polyglot
20-May-2017 13:48:28 0aac2aa81ee7: Mounted from ncsapolyglot/polyglot
20-May-2017 13:48:29 2e6275dc3089: Mounted from ncsapolyglot/polyglot
20-May-2017 13:48:30 40667869200b: Mounted from ncsapolyglot/polyglot
20-May-2017 13:48:31 8cfad5c2d90f: Mounted from ncsapolyglot/polyglot
20-May-2017 13:48:31 592e8cc170cf: Mounted from ncsapolyglot/polyglot
20-May-2017 13:48:32 e152466a133c: Mounted from ncsapolyglot/polyglot
20-May-2017 13:48:32 349781dbc7e4: Mounted from ncsapolyglot/polyglot
20-May-2017 13:48:33 d161109ec021: Mounted from ncsapolyglot/polyglot
20-May-2017 13:48:33 836ba1f26fa6: Mounted from ncsapolyglot/polyglot
20-May-2017 13:48:34 37149424dccd: Mounted from ncsapolyglot/polyglot
20-May-2017 13:48:35 c59fa6cbcbd9: Mounted from ncsapolyglot/polyglot
20-May-2017 13:48:35 981db737c880: Pushed
20-May-2017 13:48:35 8d4d1ab5ff74: Mounted from ncsapolyglot/polyglot
20-May-2017 13:48:46 6cc09119986e: Pushed
20-May-2017 13:48:53 5c1011e5eb86: Pushed
20-May-2017 13:49:12 1995560a5e0b: Pushed
20-May-2017 13:49:14 master: digest: sha256:fd76fb96dbbe02f44af30f0bf8f5fa4c5fe6045c26c0f64bfe9b1635bd74fa10 size: 6398
20-May-2017 13:49:14 The push refers to a repository [docker.io/ncsapolyglot/converters-hyperspectral]
20-May-2017 13:49:14 e96adb621fc3: Preparing
20-May-2017 13:49:14 480be0d603dc: Preparing
20-May-2017 13:49:14 03faf5e4a5a2: Preparing
20-May-2017 13:49:14 fc411992aa2b: Preparing
20-May-2017 13:49:14 0e3289b63b56: Preparing
20-May-2017 13:49:14 71a584f32ba8: Preparing
20-May-2017 13:49:14 2f3fe5e29b20: Preparing
20-May-2017 13:49:14 cfb4298e86af: Preparing
20-May-2017 13:49:14 82b840a4fe73: Preparing
20-May-2017 13:49:14 1995560a5e0b: Preparing
20-May-2017 13:49:14 dc5d5a87e534: Preparing
20-May-2017 13:49:14 6cc09119986e: Preparing
20-May-2017 13:49:14 e1b8b4334242: Preparing
20-May-2017 13:49:14 981db737c880: Preparing
20-May-2017 13:49:14 5c1011e5eb86: Preparing
20-May-2017 13:49:14 51ef985f5f2d: Preparing
20-May-2017 13:49:14 15d3d5ab1759: Preparing
20-May-2017 13:49:14 0aac2aa81ee7: Preparing
20-May-2017 13:49:14 2e6275dc3089: Preparing
20-May-2017 13:49:14 40667869200b: Preparing
20-May-2017 13:49:14 8cfad5c2d90f: Preparing
20-May-2017 13:49:14 592e8cc170cf: Preparing
20-May-2017 13:49:14 e152466a133c: Preparing
20-May-2017 13:49:14 349781dbc7e4: Preparing
20-May-2017 13:49:14 d161109ec021: Preparing
20-May-2017 13:49:14 836ba1f26fa6: Preparing
20-May-2017 13:49:14 37149424dccd: Preparing
20-May-2017 13:49:14 c59fa6cbcbd9: Preparing
20-May-2017 13:49:14 8d4d1ab5ff74: Preparing
20-May-2017 13:49:14 6cc09119986e: Waiting
20-May-2017 13:49:14 e1b8b4334242: Waiting
20-May-2017 13:49:14 981db737c880: Waiting
20-May-2017 13:49:14 5c1011e5eb86: Waiting
20-May-2017 13:49:14 51ef985f5f2d: Waiting
20-May-2017 13:49:14 71a584f32ba8: Waiting
20-May-2017 13:49:14 40667869200b: Waiting
20-May-2017 13:49:14 8cfad5c2d90f: Waiting
20-May-2017 13:49:14 15d3d5ab1759: Waiting
20-May-2017 13:49:14 2f3fe5e29b20: Waiting
20-May-2017 13:49:14 0aac2aa81ee7: Waiting
20-May-2017 13:49:14 2e6275dc3089: Waiting
20-May-2017 13:49:14 cfb4298e86af: Waiting
20-May-2017 13:49:14 836ba1f26fa6: Waiting
20-May-2017 13:49:14 37149424dccd: Waiting
20-May-2017 13:49:14 82b840a4fe73: Waiting
20-May-2017 13:49:14 1995560a5e0b: Waiting
20-May-2017 13:49:14 dc5d5a87e534: Waiting
20-May-2017 13:49:14 592e8cc170cf: Waiting
20-May-2017 13:49:14 c59fa6cbcbd9: Waiting
20-May-2017 13:49:14 8d4d1ab5ff74: Waiting
20-May-2017 13:49:14 e152466a133c: Waiting
20-May-2017 13:49:14 349781dbc7e4: Waiting
20-May-2017 13:49:14 fc411992aa2b: Layer already exists
20-May-2017 13:49:14 480be0d603dc: Layer already exists
20-May-2017 13:49:14 03faf5e4a5a2: Layer already exists
20-May-2017 13:49:14 e96adb621fc3: Layer already exists
20-May-2017 13:49:14 0e3289b63b56: Layer already exists
20-May-2017 13:49:14 71a584f32ba8: Layer already exists
20-May-2017 13:49:14 cfb4298e86af: Layer already exists
20-May-2017 13:49:14 1995560a5e0b: Layer already exists
20-May-2017 13:49:14 2f3fe5e29b20: Layer already exists
20-May-2017 13:49:14 82b840a4fe73: Layer already exists
20-May-2017 13:49:14 6cc09119986e: Layer already exists
20-May-2017 13:49:14 dc5d5a87e534: Layer already exists
20-May-2017 13:49:14 e1b8b4334242: Layer already exists
20-May-2017 13:49:14 981db737c880: Layer already exists
20-May-2017 13:49:14 5c1011e5eb86: Layer already exists
20-May-2017 13:49:14 51ef985f5f2d: Layer already exists
20-May-2017 13:49:14 15d3d5ab1759: Layer already exists
20-May-2017 13:49:14 2e6275dc3089: Layer already exists
20-May-2017 13:49:14 40667869200b: Layer already exists
20-May-2017 13:49:14 8cfad5c2d90f: Layer already exists
20-May-2017 13:49:14 592e8cc170cf: Layer already exists
20-May-2017 13:49:15 349781dbc7e4: Layer already exists
20-May-2017 13:49:15 e152466a133c: Layer already exists
20-May-2017 13:49:15 d161109ec021: Layer already exists
20-May-2017 13:49:15 836ba1f26fa6: Layer already exists
20-May-2017 13:49:15 0aac2aa81ee7: Layer already exists
20-May-2017 13:49:15 37149424dccd: Layer already exists
20-May-2017 13:49:15 c59fa6cbcbd9: Layer already exists
20-May-2017 13:49:15 8d4d1ab5ff74: Layer already exists
20-May-2017 13:49:15 latest: digest: sha256:fd76fb96dbbe02f44af30f0bf8f5fa4c5fe6045c26c0f64bfe9b1635bd74fa10 size: 6398
20-May-2017 13:49:15 Untagged: 573:latest
20-May-2017 13:49:15 Finished task 'docker build' with result: Success
20-May-2017 13:49:15 Running post build plugin 'Docker Container Cleanup'
20-May-2017 13:49:15 Running post build plugin 'NCover Results Collector'
20-May-2017 13:49:15 Running post build plugin 'Clover Results Collector'
20-May-2017 13:49:15 Running post build plugin 'npm Cache Cleanup'
20-May-2017 13:49:15 Running post build plugin 'Artifact Copier'
20-May-2017 13:49:15 Finalising the build...
20-May-2017 13:49:15 Stopping timer.
20-May-2017 13:49:15 Build POL-HYPERSPECTRAL-JOB1-3 completed.
20-May-2017 13:49:15 Running on server: post build plugin 'NCover Results Collector'
20-May-2017 13:49:15 Running on server: post build plugin 'Build Hanging Detection Configuration'
20-May-2017 13:49:15 Running on server: post build plugin 'Clover Delta Calculator'
20-May-2017 13:49:15 Running on server: post build plugin 'Maven Dependencies Postprocessor'
20-May-2017 13:49:15 All post build plugins have finished
20-May-2017 13:49:15 Generating build results summary...
20-May-2017 13:49:15 Saving build results to disk...
20-May-2017 13:49:15 Logging substituted variables...
20-May-2017 13:49:15 Indexing build results...
20-May-2017 13:49:15 Finished building POL-HYPERSPECTRAL-JOB1-3.