Build: #4 failed
Job: Default Job failed
Build log
The build generated 32,765 lines of output. The output is too long and has been truncated to the last 1,000 lines. Download or view full build log.
| 26-Jun-2017 11:27:13 | byte-compiling /srv/sw/gdal/lib/python2.7/site-packages/osgeo/gdalnumeric.py to gdalnumeric.pyc |
| 26-Jun-2017 11:27:13 | byte-compiling /srv/sw/gdal/lib/python2.7/site-packages/osgeo/gdal_array.py to gdal_array.pyc |
| 26-Jun-2017 11:27:13 | byte-compiling /srv/sw/gdal/lib/python2.7/site-packages/osgeo/gnm.py to gnm.pyc |
| 26-Jun-2017 11:27:13 | byte-compiling /srv/sw/gdal/lib/python2.7/site-packages/osr.py to osr.pyc |
| 26-Jun-2017 11:27:13 | byte-compiling /srv/sw/gdal/lib/python2.7/site-packages/ogr.py to ogr.pyc |
| 26-Jun-2017 11:27:13 | byte-compiling /srv/sw/gdal/lib/python2.7/site-packages/gdalnumeric.py to gdalnumeric.pyc |
| 26-Jun-2017 11:27:13 | running install_egg_info |
| 26-Jun-2017 11:27:13 | running egg_info |
| 26-Jun-2017 11:27:13 | creating GDAL.egg-info |
| 26-Jun-2017 11:27:13 | writing GDAL.egg-info/PKG-INFO |
| 26-Jun-2017 11:27:13 | writing top-level names to GDAL.egg-info/top_level.txt |
| 26-Jun-2017 11:27:13 | writing dependency_links to GDAL.egg-info/dependency_links.txt |
| 26-Jun-2017 11:27:13 | writing manifest file 'GDAL.egg-info/SOURCES.txt' |
| 26-Jun-2017 11:27:13 | reading manifest file 'GDAL.egg-info/SOURCES.txt' |
| 26-Jun-2017 11:27:13 | writing manifest file 'GDAL.egg-info/SOURCES.txt' |
| 26-Jun-2017 11:27:13 | Copying GDAL.egg-info to /srv/sw/gdal/lib/python2.7/site-packages/GDAL-2.1.1-py2.7.egg-info |
| 26-Jun-2017 11:27:13 | running install_scripts |
| 26-Jun-2017 11:27:13 | writing list of installed files to 'record.txt' |
| 26-Jun-2017 11:27:13 | for f in `ls ./scripts` ; do /bin/bash /srv/downloads/gdal-2.1.1/libtool --mode=install /srv/downloads/gdal-2.1.1/install-sh -c ./scripts/$f /srv/sw/gdal/bin ; done |
| 26-Jun-2017 11:27:13 | libtool: install: /srv/downloads/gdal-2.1.1/install-sh -c ./scripts/epsg_tr.py /srv/sw/gdal/bin/epsg_tr.py |
| 26-Jun-2017 11:27:13 | libtool: install: /srv/downloads/gdal-2.1.1/install-sh -c ./scripts/esri2wkt.py /srv/sw/gdal/bin/esri2wkt.py |
| 26-Jun-2017 11:27:13 | libtool: install: /srv/downloads/gdal-2.1.1/install-sh -c ./scripts/gcps2vec.py /srv/sw/gdal/bin/gcps2vec.py |
| 26-Jun-2017 11:27:13 | libtool: install: /srv/downloads/gdal-2.1.1/install-sh -c ./scripts/gcps2wld.py /srv/sw/gdal/bin/gcps2wld.py |
| 26-Jun-2017 11:27:13 | libtool: install: /srv/downloads/gdal-2.1.1/install-sh -c ./scripts/gdal2tiles.py /srv/sw/gdal/bin/gdal2tiles.py |
| 26-Jun-2017 11:27:14 | libtool: install: /srv/downloads/gdal-2.1.1/install-sh -c ./scripts/gdal2xyz.py /srv/sw/gdal/bin/gdal2xyz.py |
| 26-Jun-2017 11:27:14 | libtool: install: /srv/downloads/gdal-2.1.1/install-sh -c ./scripts/gdal_auth.py /srv/sw/gdal/bin/gdal_auth.py |
| 26-Jun-2017 11:27:14 | libtool: install: /srv/downloads/gdal-2.1.1/install-sh -c ./scripts/gdal_calc.dox /srv/sw/gdal/bin/gdal_calc.dox |
| 26-Jun-2017 11:27:14 | libtool: install: /srv/downloads/gdal-2.1.1/install-sh -c ./scripts/gdal_calc.py /srv/sw/gdal/bin/gdal_calc.py |
| 26-Jun-2017 11:27:14 | libtool: install: /srv/downloads/gdal-2.1.1/install-sh -c ./scripts/gdal_edit.dox /srv/sw/gdal/bin/gdal_edit.dox |
| 26-Jun-2017 11:27:14 | libtool: install: /srv/downloads/gdal-2.1.1/install-sh -c ./scripts/gdal_edit.py /srv/sw/gdal/bin/gdal_edit.py |
| 26-Jun-2017 11:27:14 | libtool: install: /srv/downloads/gdal-2.1.1/install-sh -c ./scripts/gdal_fillnodata.dox /srv/sw/gdal/bin/gdal_fillnodata.dox |
| 26-Jun-2017 11:27:14 | libtool: install: /srv/downloads/gdal-2.1.1/install-sh -c ./scripts/gdal_fillnodata.py /srv/sw/gdal/bin/gdal_fillnodata.py |
| 26-Jun-2017 11:27:14 | libtool: install: /srv/downloads/gdal-2.1.1/install-sh -c ./scripts/gdal_merge.py /srv/sw/gdal/bin/gdal_merge.py |
| 26-Jun-2017 11:27:14 | libtool: install: /srv/downloads/gdal-2.1.1/install-sh -c ./scripts/gdal_pansharpen.py /srv/sw/gdal/bin/gdal_pansharpen.py |
| 26-Jun-2017 11:27:14 | libtool: install: /srv/downloads/gdal-2.1.1/install-sh -c ./scripts/gdal_polygonize.dox /srv/sw/gdal/bin/gdal_polygonize.dox |
| 26-Jun-2017 11:27:14 | libtool: install: /srv/downloads/gdal-2.1.1/install-sh -c ./scripts/gdal_polygonize.py /srv/sw/gdal/bin/gdal_polygonize.py |
| 26-Jun-2017 11:27:14 | libtool: install: /srv/downloads/gdal-2.1.1/install-sh -c ./scripts/gdal_proximity.dox /srv/sw/gdal/bin/gdal_proximity.dox |
| 26-Jun-2017 11:27:14 | libtool: install: /srv/downloads/gdal-2.1.1/install-sh -c ./scripts/gdal_proximity.py /srv/sw/gdal/bin/gdal_proximity.py |
| 26-Jun-2017 11:27:14 | libtool: install: /srv/downloads/gdal-2.1.1/install-sh -c ./scripts/gdal_retile.py /srv/sw/gdal/bin/gdal_retile.py |
| 26-Jun-2017 11:27:14 | libtool: install: /srv/downloads/gdal-2.1.1/install-sh -c ./scripts/gdal_sieve.dox /srv/sw/gdal/bin/gdal_sieve.dox |
| 26-Jun-2017 11:27:14 | libtool: install: /srv/downloads/gdal-2.1.1/install-sh -c ./scripts/gdal_sieve.py /srv/sw/gdal/bin/gdal_sieve.py |
| 26-Jun-2017 11:27:14 | libtool: install: /srv/downloads/gdal-2.1.1/install-sh -c ./scripts/gdalchksum.py /srv/sw/gdal/bin/gdalchksum.py |
| 26-Jun-2017 11:27:14 | libtool: install: /srv/downloads/gdal-2.1.1/install-sh -c ./scripts/gdalcompare.dox /srv/sw/gdal/bin/gdalcompare.dox |
| 26-Jun-2017 11:27:14 | libtool: install: /srv/downloads/gdal-2.1.1/install-sh -c ./scripts/gdalcompare.py /srv/sw/gdal/bin/gdalcompare.py |
| 26-Jun-2017 11:27:14 | libtool: install: /srv/downloads/gdal-2.1.1/install-sh -c ./scripts/gdalident.py /srv/sw/gdal/bin/gdalident.py |
| 26-Jun-2017 11:27:14 | libtool: install: /srv/downloads/gdal-2.1.1/install-sh -c ./scripts/gdalimport.py /srv/sw/gdal/bin/gdalimport.py |
| 26-Jun-2017 11:27:14 | libtool: install: /srv/downloads/gdal-2.1.1/install-sh -c ./scripts/gdalmove.dox /srv/sw/gdal/bin/gdalmove.dox |
| 26-Jun-2017 11:27:14 | libtool: install: /srv/downloads/gdal-2.1.1/install-sh -c ./scripts/gdalmove.py /srv/sw/gdal/bin/gdalmove.py |
| 26-Jun-2017 11:27:14 | libtool: install: /srv/downloads/gdal-2.1.1/install-sh -c ./scripts/mkgraticule.py /srv/sw/gdal/bin/mkgraticule.py |
| 26-Jun-2017 11:27:14 | libtool: install: /srv/downloads/gdal-2.1.1/install-sh -c ./scripts/pct2rgb.py /srv/sw/gdal/bin/pct2rgb.py |
| 26-Jun-2017 11:27:14 | libtool: install: /srv/downloads/gdal-2.1.1/install-sh -c ./scripts/rgb2pct.py /srv/sw/gdal/bin/rgb2pct.py |
| 26-Jun-2017 11:27:14 | make[2]: Leaving directory '/srv/downloads/gdal-2.1.1/swig/python' |
| 26-Jun-2017 11:27:14 | make[1]: Leaving directory '/srv/downloads/gdal-2.1.1/swig' |
| 26-Jun-2017 11:27:14 | (cd scripts; make install) |
| 26-Jun-2017 11:27:14 | make[1]: Entering directory '/srv/downloads/gdal-2.1.1/scripts' |
| 26-Jun-2017 11:27:14 | if test "x`pkg-config --version 2>/dev/null`" != "x" -a "x`pkg-config --variable=compatdir bash-completion`" != "x"; then \ |
| 26-Jun-2017 11:27:14 | /srv/downloads/gdal-2.1.1/install-sh -d /srv/sw/gdal`pkg-config --variable=compatdir bash-completion` ; \ |
| 26-Jun-2017 11:27:14 | cp gdal-bash-completion.sh /srv/sw/gdal`pkg-config --variable=compatdir bash-completion`; \ |
| 26-Jun-2017 11:27:14 | fi |
| 26-Jun-2017 11:27:14 | Package bash-completion was not found in the pkg-config search path. |
| 26-Jun-2017 11:27:14 | Perhaps you should add the directory containing `bash-completion.pc' |
| 26-Jun-2017 11:27:14 | to the PKG_CONFIG_PATH environment variable |
| 26-Jun-2017 11:27:14 | No package 'bash-completion' found |
| 26-Jun-2017 11:27:14 | make[1]: Leaving directory '/srv/downloads/gdal-2.1.1/scripts' |
| 26-Jun-2017 11:27:14 | for f in LICENSE.TXT data/*.* ; do /srv/downloads/gdal-2.1.1/install-sh -c -m 0644 $f /srv/sw/gdal/share/gdal ; done |
| 26-Jun-2017 11:27:15 | /bin/bash /srv/downloads/gdal-2.1.1/libtool --mode=finish --silent /srv/sw/gdal/lib |
| 26-Jun-2017 11:27:15 | /srv/downloads/gdal-2.1.1/install-sh -d /srv/sw/gdal/lib/pkgconfig |
| 26-Jun-2017 11:27:15 | /srv/downloads/gdal-2.1.1/install-sh -c -m 0644 gdal.pc /srv/sw/gdal/lib/pkgconfig/gdal.pc |
| 26-Jun-2017 11:27:43 | ---> b6164cf9da4c |
| 26-Jun-2017 11:27:43 | Removing intermediate container 2fb6bcda7442 |
| 26-Jun-2017 11:27:43 | Step 16/31 : ENV PATH "/srv/sw/gdal/bin:${PATH}" PYTHONPATH "/srv/sw/gdal/lib/python2.7/site-packages:${PYTHONPATH}" LD_LIBRARY_PATH "/srv/sw/gdal/lib:${LD_LIBRARY_PATH}" |
| 26-Jun-2017 11:27:44 | ---> Running in 67a47b4cbd58 |
| 26-Jun-2017 11:27:44 | ---> 2222bac92296 |
| 26-Jun-2017 11:27:44 | Removing intermediate container 67a47b4cbd58 |
| 26-Jun-2017 11:27:44 | Step 17/31 : RUN cd /srv/downloads && wget -q https://github.com/nco/nco/archive/4.6.1.tar.gz -O nco-4.6.1.tar.gz && tar xfz nco-4.6.1.tar.gz && cd nco-4.6.1 && ./configure NETCDF_ROOT=/srv/sw/netcdf-4.4.1 --prefix=/srv/sw/nco-4.6.1 --enable-ncap2 --enable-udunits2 && make && make install |
| 26-Jun-2017 11:27:44 | ---> Running in 0de69ee60cc9 |
| 26-Jun-2017 11:27:46 | checking build system type... x86_64-unknown-linux-gnu |
| 26-Jun-2017 11:27:46 | checking host system type... x86_64-unknown-linux-gnu |
| 26-Jun-2017 11:27:46 | checking target system type... x86_64-unknown-linux-gnu |
| 26-Jun-2017 11:27:46 | checking for grep that handles long lines and -e... /bin/grep |
| 26-Jun-2017 11:27:46 | checking for egrep... /bin/grep -E |
| 26-Jun-2017 11:27:46 | checking for a BSD-compatible install... /usr/bin/install -c |
| 26-Jun-2017 11:27:46 | checking whether build environment is sane... yes |
| 26-Jun-2017 11:27:46 | checking for a thread-safe mkdir -p... /bin/mkdir -p |
| 26-Jun-2017 11:27:46 | checking for gawk... no |
| 26-Jun-2017 11:27:46 | checking for mawk... mawk |
| 26-Jun-2017 11:27:46 | checking whether make sets $(MAKE)... yes |
| 26-Jun-2017 11:27:46 | checking whether make supports nested variables... yes |
| 26-Jun-2017 11:27:46 | checking for gcc... gcc |
| 26-Jun-2017 11:27:46 | checking whether the C compiler works... yes |
| 26-Jun-2017 11:27:46 | checking for C compiler default output file name... a.out |
| 26-Jun-2017 11:27:46 | checking for suffix of executables... |
| 26-Jun-2017 11:27:46 | checking whether we are cross compiling... no |
| 26-Jun-2017 11:27:46 | checking for suffix of object files... o |
| 26-Jun-2017 11:27:46 | checking whether we are using the GNU C compiler... yes |
| 26-Jun-2017 11:27:46 | checking whether gcc accepts -g... yes |
| 26-Jun-2017 11:27:46 | checking for gcc option to accept ISO C89... none needed |
| 26-Jun-2017 11:27:46 | checking whether gcc understands -c and -o together... yes |
| 26-Jun-2017 11:27:46 | checking for style of include used by make... GNU |
| 26-Jun-2017 11:27:46 | checking dependency style of gcc... gcc3 |
| 26-Jun-2017 11:27:46 | checking for g++... g++ |
| 26-Jun-2017 11:27:46 | checking whether we are using the GNU C++ compiler... yes |
| 26-Jun-2017 11:27:46 | checking whether g++ accepts -g... yes |
| 26-Jun-2017 11:27:46 | checking dependency style of g++... gcc3 |
| 26-Jun-2017 11:27:46 | checking how to run the C preprocessor... gcc -E |
| 26-Jun-2017 11:27:46 | checking how to run the C++ preprocessor... g++ -E |
| 26-Jun-2017 11:27:46 | checking for gcc option to accept ISO C99... -std=gnu99 |
| 26-Jun-2017 11:27:46 | checking for gcc -std=gnu99 option to accept ISO Standard C... (cached) -std=gnu99 |
| 26-Jun-2017 11:27:46 | checking for flex... no |
| 26-Jun-2017 11:27:46 | checking for lex... no |
| 26-Jun-2017 11:27:46 | checking for bison... no |
| 26-Jun-2017 11:27:46 | checking for byacc... no |
| 26-Jun-2017 11:27:46 | checking whether ln -s works... yes |
| 26-Jun-2017 11:27:47 | checking how to print strings... printf |
| 26-Jun-2017 11:27:47 | checking for a sed that does not truncate output... /bin/sed |
| 26-Jun-2017 11:27:47 | checking for fgrep... /bin/grep -F |
| 26-Jun-2017 11:27:47 | checking for ld used by gcc -std=gnu99... /usr/bin/ld |
| 26-Jun-2017 11:27:47 | checking if the linker (/usr/bin/ld) is GNU ld... yes |
| 26-Jun-2017 11:27:47 | checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B |
| 26-Jun-2017 11:27:47 | checking the name lister (/usr/bin/nm -B) interface... BSD nm |
| 26-Jun-2017 11:27:47 | checking the maximum length of command line arguments... 1572864 |
| 26-Jun-2017 11:27:47 | checking whether the shell understands some XSI constructs... yes |
| 26-Jun-2017 11:27:47 | checking whether the shell understands "+="... yes |
| 26-Jun-2017 11:27:47 | checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop |
| 26-Jun-2017 11:27:47 | checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop |
| 26-Jun-2017 11:27:47 | checking for /usr/bin/ld option to reload object files... -r |
| 26-Jun-2017 11:27:47 | checking for objdump... objdump |
| 26-Jun-2017 11:27:47 | checking how to recognize dependent libraries... pass_all |
| 26-Jun-2017 11:27:47 | checking for dlltool... no |
| 26-Jun-2017 11:27:47 | checking how to associate runtime and link libraries... printf %s\n |
| 26-Jun-2017 11:27:47 | checking for ar... ar |
| 26-Jun-2017 11:27:47 | checking for archiver @FILE support... @ |
| 26-Jun-2017 11:27:47 | checking for strip... strip |
| 26-Jun-2017 11:27:47 | checking for ranlib... ranlib |
| 26-Jun-2017 11:27:47 | checking command to parse /usr/bin/nm -B output from gcc -std=gnu99 object... ok |
| 26-Jun-2017 11:27:47 | checking for sysroot... no |
| 26-Jun-2017 11:27:47 | checking for mt... no |
| 26-Jun-2017 11:27:47 | checking if : is a manifest tool... no |
| 26-Jun-2017 11:27:47 | checking for ANSI C header files... yes |
| 26-Jun-2017 11:27:47 | checking for sys/types.h... yes |
| 26-Jun-2017 11:27:47 | checking for sys/stat.h... yes |
| 26-Jun-2017 11:27:47 | checking for stdlib.h... yes |
| 26-Jun-2017 11:27:47 | checking for string.h... yes |
| 26-Jun-2017 11:27:47 | checking for memory.h... yes |
| 26-Jun-2017 11:27:47 | checking for strings.h... yes |
| 26-Jun-2017 11:27:47 | checking for inttypes.h... yes |
| 26-Jun-2017 11:27:47 | checking for stdint.h... yes |
| 26-Jun-2017 11:27:47 | checking for unistd.h... yes |
| 26-Jun-2017 11:27:47 | checking for dlfcn.h... yes |
| 26-Jun-2017 11:27:47 | checking for objdir... .libs |
| 26-Jun-2017 11:27:47 | checking if gcc -std=gnu99 supports -fno-rtti -fno-exceptions... no |
| 26-Jun-2017 11:27:47 | checking for gcc -std=gnu99 option to produce PIC... -fPIC -DPIC |
| 26-Jun-2017 11:27:47 | checking if gcc -std=gnu99 PIC flag -fPIC -DPIC works... yes |
| 26-Jun-2017 11:27:47 | checking if gcc -std=gnu99 static flag -static works... yes |
| 26-Jun-2017 11:27:47 | checking if gcc -std=gnu99 supports -c -o file.o... yes |
| 26-Jun-2017 11:27:47 | checking if gcc -std=gnu99 supports -c -o file.o... (cached) yes |
| 26-Jun-2017 11:27:47 | checking whether the gcc -std=gnu99 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes |
| 26-Jun-2017 11:27:47 | checking whether -lc should be explicitly linked in... no |
| 26-Jun-2017 11:27:48 | checking dynamic linker characteristics... GNU/Linux ld.so |
| 26-Jun-2017 11:27:48 | checking how to hardcode library paths into programs... immediate |
| 26-Jun-2017 11:27:48 | checking whether stripping libraries is possible... yes |
| 26-Jun-2017 11:27:48 | checking if libtool supports shared libraries... yes |
| 26-Jun-2017 11:27:48 | checking whether to build shared libraries... yes |
| 26-Jun-2017 11:27:48 | checking whether to build static libraries... yes |
| 26-Jun-2017 11:27:48 | checking how to run the C++ preprocessor... g++ -E |
| 26-Jun-2017 11:27:48 | checking for ld used by g++... /usr/bin/ld -m elf_x86_64 |
| 26-Jun-2017 11:27:48 | checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes |
| 26-Jun-2017 11:27:48 | checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes |
| 26-Jun-2017 11:27:48 | checking for g++ option to produce PIC... -fPIC -DPIC |
| 26-Jun-2017 11:27:48 | checking if g++ PIC flag -fPIC -DPIC works... yes |
| 26-Jun-2017 11:27:48 | checking if g++ static flag -static works... yes |
| 26-Jun-2017 11:27:48 | checking if g++ supports -c -o file.o... yes |
| 26-Jun-2017 11:27:48 | checking if g++ supports -c -o file.o... (cached) yes |
| 26-Jun-2017 11:27:48 | checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes |
| 26-Jun-2017 11:27:48 | checking dynamic linker characteristics... (cached) GNU/Linux ld.so |
| 26-Jun-2017 11:27:48 | checking how to hardcode library paths into programs... immediate |
| 26-Jun-2017 11:27:48 | checking whether to enable maintainer-specific portions of Makefiles... no |
| 26-Jun-2017 11:27:48 | checking for working memcmp... yes |
| 26-Jun-2017 11:27:48 | checking whether lstat correctly handles trailing slash... yes |
| 26-Jun-2017 11:27:48 | checking whether stat accepts an empty string... no |
| 26-Jun-2017 11:27:48 | checking for working strtod... yes |
| 26-Jun-2017 11:27:48 | checking for canonicalize_file_name... yes |
| 26-Jun-2017 11:27:48 | checking for floor... no |
| 26-Jun-2017 11:27:48 | checking for gethostname... yes |
| 26-Jun-2017 11:27:48 | checking for getpagesize... yes |
| 26-Jun-2017 11:27:48 | checking for getrusage... yes |
| 26-Jun-2017 11:27:48 | checking for memchr... yes |
| 26-Jun-2017 11:27:48 | checking for memmove... yes |
| 26-Jun-2017 11:27:49 | checking for memset... yes |
| 26-Jun-2017 11:27:49 | checking for mkstemp... yes |
| 26-Jun-2017 11:27:49 | checking for pow... no |
| 26-Jun-2017 11:27:49 | checking for readlink... yes |
| 26-Jun-2017 11:27:49 | checking for realpath... yes |
| 26-Jun-2017 11:27:49 | checking for regcomp... yes |
| 26-Jun-2017 11:27:49 | checking for setlocale... yes |
| 26-Jun-2017 11:27:49 | checking for sqrt... no |
| 26-Jun-2017 11:27:49 | checking for strchr... yes |
| 26-Jun-2017 11:27:49 | checking for strerror... yes |
| 26-Jun-2017 11:27:49 | checking for strpbrk... yes |
| 26-Jun-2017 11:27:49 | checking for strrchr... yes |
| 26-Jun-2017 11:27:49 | checking for strstr... yes |
| 26-Jun-2017 11:27:49 | checking for strtol... yes |
| 26-Jun-2017 11:27:49 | checking for ANSI C header files... (cached) yes |
| 26-Jun-2017 11:27:49 | checking getopt.h usability... yes |
| 26-Jun-2017 11:27:49 | checking getopt.h presence... yes |
| 26-Jun-2017 11:27:49 | checking for getopt.h... yes |
| 26-Jun-2017 11:27:49 | checking libintl.h usability... yes |
| 26-Jun-2017 11:27:49 | checking libintl.h presence... yes |
| 26-Jun-2017 11:27:49 | checking for libintl.h... yes |
| 26-Jun-2017 11:27:49 | checking limits.h usability... yes |
| 26-Jun-2017 11:27:49 | checking limits.h presence... yes |
| 26-Jun-2017 11:27:49 | checking for limits.h... yes |
| 26-Jun-2017 11:27:49 | checking locale.h usability... yes |
| 26-Jun-2017 11:27:49 | checking locale.h presence... yes |
| 26-Jun-2017 11:27:49 | checking for locale.h... yes |
| 26-Jun-2017 11:27:49 | checking netinet/in.h usability... yes |
| 26-Jun-2017 11:27:49 | checking netinet/in.h presence... yes |
| 26-Jun-2017 11:27:49 | checking for netinet/in.h... yes |
| 26-Jun-2017 11:27:49 | checking for stdlib.h... (cached) yes |
| 26-Jun-2017 11:27:49 | checking for string.h... (cached) yes |
| 26-Jun-2017 11:27:49 | checking for strings.h... (cached) yes |
| 26-Jun-2017 11:27:49 | checking for unistd.h... (cached) yes |
| 26-Jun-2017 11:27:50 | checking cstdlib usability... yes |
| 26-Jun-2017 11:27:50 | checking cstdlib presence... yes |
| 26-Jun-2017 11:27:50 | checking for cstdlib... yes |
| 26-Jun-2017 11:27:50 | checking for an ANSI C-conforming const... yes |
| 26-Jun-2017 11:27:50 | checking for inline... inline |
| 26-Jun-2017 11:27:50 | checking for pid_t... yes |
| 26-Jun-2017 11:27:50 | checking for size_t... yes |
| 26-Jun-2017 11:27:50 | checking whether struct tm is in sys/time.h or time.h... time.h |
| 26-Jun-2017 11:27:50 | checking for uid_t in sys/types.h... yes |
| 26-Jun-2017 11:27:50 | checking for ptrdiff_t... yes |
| 26-Jun-2017 11:27:50 | checking size of int*... 8 |
| 26-Jun-2017 11:27:50 | checking whether C++ compiler implements namespaces... yes |
| 26-Jun-2017 11:27:50 | checking whether C++ compiler has working valarray<T>... yes |
| 26-Jun-2017 11:27:50 | checking for special C compiler options needed for large files... no |
| 26-Jun-2017 11:27:50 | checking for _FILE_OFFSET_BITS value needed for large files... no |
| 26-Jun-2017 11:27:50 | ################################# |
| 26-Jun-2017 11:27:50 | # Test for netCDF # |
| 26-Jun-2017 11:27:50 | ################################ |
| 26-Jun-2017 11:27:50 | checking for /opt/local/include/netcdf.h... no |
| 26-Jun-2017 11:27:50 | checking for /opt/local/lib/libnetcdf.a... no |
| 26-Jun-2017 11:27:50 | checking netcdf.h usability... yes |
| 26-Jun-2017 11:27:50 | checking netcdf.h presence... yes |
| 26-Jun-2017 11:27:50 | checking for netcdf.h... yes |
| 26-Jun-2017 11:27:50 | checking for nc_open in -lnetcdf... yes |
| 26-Jun-2017 11:27:50 | ################################# |
| 26-Jun-2017 11:27:50 | # Test for netCDF4 support # |
| 26-Jun-2017 11:27:50 | ################################# |
| 26-Jun-2017 11:27:50 | checking whether NC_CHUNKED is declared... yes |
| 26-Jun-2017 11:27:50 | configure: netcdf.h contains netCDF4 definitions |
| 26-Jun-2017 11:27:50 | checking for nc_def_var_chunking in -lnetcdf... yes |
| 26-Jun-2017 11:27:50 | configure: Good news: Simple program compiles and links to netCDF4 library |
| 26-Jun-2017 11:27:50 | checking for gcc -std=gnu99 option to support OpenMP... -fopenmp |
| 26-Jun-2017 11:27:50 | configure: OpenMP support enabled |
| 26-Jun-2017 11:27:50 | Beginning generic tests for DAP support |
| 26-Jun-2017 11:27:50 | Testing for DAP-netCDF support (is DAP in libnetcdf.a?)... |
| 26-Jun-2017 11:27:50 | checking for daperror in -lnetcdf... no |
| 26-Jun-2017 11:27:50 | configure: WARNING: DAP-netCDF support through libnetcdf.a disabled (missing DAP functions) |
| 26-Jun-2017 11:27:50 | checking for getopt_long... yes |
| 26-Jun-2017 11:27:51 | checking for _g95_ac_array in -lf95... no |
| 26-Jun-2017 11:27:51 | checking for sin in -lm... yes |
| 26-Jun-2017 11:27:51 | checking for sinf in -lsunmath... no |
| 26-Jun-2017 11:27:51 | checking for gettext in -lintl... no |
| 26-Jun-2017 11:27:51 | checking for res_init in -lresolv... no |
| 26-Jun-2017 11:27:51 | checking for main in -lsocket... no |
| 26-Jun-2017 11:27:51 | checking for main in -lthread... no |
| 26-Jun-2017 11:27:51 | checking for nco_open in -lnco... no |
| 26-Jun-2017 11:27:51 | checking for nc_inq_format... yes |
| 26-Jun-2017 11:27:51 | checking for getopt... yes |
| 26-Jun-2017 11:27:51 | checking for getopt_long... (cached) yes |
| 26-Jun-2017 11:27:51 | checking for atan2... yes |
| 26-Jun-2017 11:27:51 | checking for acosf... yes |
| 26-Jun-2017 11:27:51 | checking for asinf... yes |
| 26-Jun-2017 11:27:51 | checking for atanf... yes |
| 26-Jun-2017 11:27:51 | checking for atan2f... yes |
| 26-Jun-2017 11:27:51 | checking for cosf... yes |
| 26-Jun-2017 11:27:51 | checking for expf... yes |
| 26-Jun-2017 11:27:51 | checking for fabsf... yes |
| 26-Jun-2017 11:27:51 | checking for fmodf... yes |
| 26-Jun-2017 11:27:52 | checking for log10f... yes |
| 26-Jun-2017 11:27:52 | checking for logf... yes |
| 26-Jun-2017 11:27:52 | checking for powf... yes |
| 26-Jun-2017 11:27:52 | checking for sinf... yes |
| 26-Jun-2017 11:27:52 | checking for sqrtf... yes |
| 26-Jun-2017 11:27:52 | checking for tanf... yes |
| 26-Jun-2017 11:27:52 | checking for erff... yes |
| 26-Jun-2017 11:27:52 | checking for erfcf... yes |
| 26-Jun-2017 11:27:52 | checking for gammaf... yes |
| 26-Jun-2017 11:27:52 | checking for acoshf... yes |
| 26-Jun-2017 11:27:52 | checking for asinhf... yes |
| 26-Jun-2017 11:27:52 | checking for atanhf... yes |
| 26-Jun-2017 11:27:52 | checking for coshf... yes |
| 26-Jun-2017 11:27:52 | checking for sinhf... yes |
| 26-Jun-2017 11:27:52 | checking for tanhf... yes |
| 26-Jun-2017 11:27:52 | checking for ceilf... yes |
| 26-Jun-2017 11:27:52 | checking for floorf... yes |
| 26-Jun-2017 11:27:52 | checking for nearbyint... yes |
| 26-Jun-2017 11:27:52 | checking for rint... yes |
| 26-Jun-2017 11:27:53 | checking for round... yes |
| 26-Jun-2017 11:27:53 | checking for trunc... yes |
| 26-Jun-2017 11:27:53 | checking for nearbyintf... yes |
| 26-Jun-2017 11:27:53 | checking for rintf... yes |
| 26-Jun-2017 11:27:53 | checking for roundf... yes |
| 26-Jun-2017 11:27:53 | checking for truncf... yes |
| 26-Jun-2017 11:27:53 | checking for getopt_long... (cached) yes |
| 26-Jun-2017 11:27:53 | checking for strdup... yes |
| 26-Jun-2017 11:27:53 | checking for strcasecmp... yes |
| 26-Jun-2017 11:27:53 | checking for strcasestr... yes |
| 26-Jun-2017 11:27:53 | ########################################################## |
| 26-Jun-2017 11:27:53 | # Sorting out MacOSX build parameters # |
| 26-Jun-2017 11:27:53 | ########################################################## |
| 26-Jun-2017 11:27:53 | ################################# |
| 26-Jun-2017 11:27:53 | # Testing for ANTLR support # |
| 26-Jun-2017 11:27:53 | ################################# |
| 26-Jun-2017 11:27:53 | checking for runantlr... runantlr |
| 26-Jun-2017 11:27:53 | configure: antlr library was found |
| 26-Jun-2017 11:27:53 | ################################################## |
| 26-Jun-2017 11:27:53 | # Testing for ESMF support (only for developers) # |
| 26-Jun-2017 11:27:53 | ################################################## |
| 26-Jun-2017 11:27:53 | ######################################## |
| 26-Jun-2017 11:27:53 | # Testing for GSL support # |
| 26-Jun-2017 11:27:53 | ######################################## |
| 26-Jun-2017 11:27:53 | configure: WARNING: Did not find 'gsl-config' command in your default path |
| 26-Jun-2017 11:27:53 | checking regex.h usability... yes |
| 26-Jun-2017 11:27:53 | checking regex.h presence... yes |
| 26-Jun-2017 11:27:53 | checking for regex.h... yes |
| 26-Jun-2017 11:27:53 | checking for sys/types.h... (cached) yes |
| 26-Jun-2017 11:27:53 | checking for regexec... yes |
| 26-Jun-2017 11:27:53 | checking for regcomp... (cached) yes |
| 26-Jun-2017 11:27:53 | checking for regfree... yes |
| 26-Jun-2017 11:27:53 | ######################################## |
| 26-Jun-2017 11:27:53 | # Testing for UDUNITS support # |
| 26-Jun-2017 11:27:53 | ######################################## |
| 26-Jun-2017 11:27:53 | WARNING: Requested both UDUnits and UDUnits2 support---overriding UDUnits |
| 26-Jun-2017 11:27:53 | Will attempt to build NCO with UDUnits support from libudunits2, not from libudunits |
| 26-Jun-2017 11:27:53 | checking for XML_ParserCreate in -lexpat... yes |
| 26-Jun-2017 11:27:53 | checking for /usr/include/udunits2/udunits2.h... no |
| 26-Jun-2017 11:27:53 | checking for /usr/include/udunits2.h... yes |
| 26-Jun-2017 11:27:53 | checking for /usr/lib/x86_64-linux-gnu/libudunits2.a... yes |
| 26-Jun-2017 11:27:53 | checking for /usr/lib/i386-linux-gnu/libudunits2.a... no |
| 26-Jun-2017 11:27:53 | checking for /opt/local/include/udunits2/udunits2.h... no |
| 26-Jun-2017 11:27:53 | checking for /opt/local/lib/libudunits2.a... no |
| 26-Jun-2017 11:27:53 | checking for ... no |
| 26-Jun-2017 11:27:53 | configure: WARNING: file was not found but will still attempt to build NCO with UDUnits2 support. |
| 26-Jun-2017 11:27:53 | configure: NB: Following tests of UDUnits2 library and header must succeed for UDUnits2 support: |
| 26-Jun-2017 11:27:53 | checking for ut_read_xml in -ludunits2... yes |
| 26-Jun-2017 11:27:53 | checking udunits2.h usability... yes |
| 26-Jun-2017 11:27:53 | checking udunits2.h presence... yes |
| 26-Jun-2017 11:27:53 | checking for udunits2.h... yes |
| 26-Jun-2017 11:27:53 | configure: UDUnits2 support enabled |
| 26-Jun-2017 11:27:53 | checking for ncgen... /srv/sw/netcdf-4.4.1/bin/ncgen |
| 26-Jun-2017 11:27:53 | configure: Creating sample netCDF data files for self-tests |
| 26-Jun-2017 11:27:54 | ############################### |
| 26-Jun-2017 11:27:54 | # Require Shared Libs? # |
| 26-Jun-2017 11:27:54 | ############################### |
| 26-Jun-2017 11:27:54 | checking for makeinfo... no |
| 26-Jun-2017 11:27:54 | checking that generated files are newer than configure... done |
| 26-Jun-2017 11:27:54 | configure: creating ./config.status |
| 26-Jun-2017 11:27:54 | config.status: creating Makefile |
| 26-Jun-2017 11:27:54 | config.status: creating data/Makefile |
| 26-Jun-2017 11:27:54 | config.status: creating src/Makefile |
| 26-Jun-2017 11:27:54 | config.status: creating src/nco/Makefile |
| 26-Jun-2017 11:27:54 | config.status: creating man/Makefile |
| 26-Jun-2017 11:27:54 | config.status: creating src/nco_c++/Makefile |
| 26-Jun-2017 11:27:54 | config.status: creating src/nco++/Makefile |
| 26-Jun-2017 11:27:54 | config.status: creating config.h |
| 26-Jun-2017 11:27:54 | config.status: executing depfiles commands |
| 26-Jun-2017 11:27:55 | config.status: executing libtool commands |
| 26-Jun-2017 11:27:55 | |
| 26-Jun-2017 11:27:55 | Configuration Parameters: |
| 26-Jun-2017 11:27:55 | AR_FLAGS............. cru |
| 26-Jun-2017 11:27:55 | CC................... gcc -std=gnu99 |
| 26-Jun-2017 11:27:55 | CFLAGS............... -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE |
| 26-Jun-2017 11:27:55 | CPP.................. gcc -E |
| 26-Jun-2017 11:27:55 | CPPFLAGS............. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include |
| 26-Jun-2017 11:27:55 | CXX.................. g++ |
| 26-Jun-2017 11:27:55 | CXXFLAGS............. -g -O2 |
| 26-Jun-2017 11:27:55 | ENABLE_DAP........... no |
| 26-Jun-2017 11:27:55 | ENABLE_ESMF...........no |
| 26-Jun-2017 11:27:55 | ENABLE_GSL........... no |
| 26-Jun-2017 11:27:55 | ENABLE_NETCDF4....... yes |
| 26-Jun-2017 11:27:55 | ENABLE_OPENMP........ yes |
| 26-Jun-2017 11:27:55 | ENABLE_UDUNITS....... no |
| 26-Jun-2017 11:27:55 | ENABLE_UDUNITS2...... yes |
| 26-Jun-2017 11:27:55 | GSL_ROOT............. |
| 26-Jun-2017 11:27:55 | HAVE_ANTLR........... runantlr |
| 26-Jun-2017 11:27:55 | HAVE_MAKEINFO........ no |
| 26-Jun-2017 11:27:55 | HAVE_NETCDF4_H....... yes |
| 26-Jun-2017 11:27:55 | HOST................. |
| 26-Jun-2017 11:27:55 | HOSTNAME............. 5c84359661e5 |
| 26-Jun-2017 11:27:55 | LDFLAGS.............. -L/srv/sw/netcdf-4.4.1/lib -lnetcdf -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu |
| 26-Jun-2017 11:27:55 | LIBS................. -ludunits2 -lexpat -lm -lnetcdf -lnetcdf -ludunits2 |
| 26-Jun-2017 11:27:55 | NETCDF_ROOT.......... /srv/sw/netcdf-4.4.1 |
| 26-Jun-2017 11:27:55 | OPENMP_CFLAGS........ -fopenmp |
| 26-Jun-2017 11:27:55 | host................. x86_64-unknown-linux-gnu |
| 26-Jun-2017 11:27:55 | install prefix ...... /srv/sw/nco-4.6.1 |
| 26-Jun-2017 11:27:55 | ******************************************************************* |
| 26-Jun-2017 11:27:55 | Configuration complete. You are now ready to run 'make'. |
| 26-Jun-2017 11:27:55 | Ensure 'make' points to GNU Make (AT&T Make chokes on GNU syntax). |
| 26-Jun-2017 11:27:55 | If the build fails, please examine the file 'configure.eg' |
| 26-Jun-2017 11:27:55 | in the top-level NCO directory. It contains examples known to |
| 26-Jun-2017 11:27:55 | build NCO for various platforms and compilers. |
| 26-Jun-2017 11:27:55 | ******************************************************************* |
| 26-Jun-2017 11:27:55 | make all-recursive |
| 26-Jun-2017 11:27:55 | make[1]: Entering directory '/srv/downloads/nco-4.6.1' |
| 26-Jun-2017 11:27:55 | Making all in data |
| 26-Jun-2017 11:27:55 | make[2]: Entering directory '/srv/downloads/nco-4.6.1/data' |
| 26-Jun-2017 11:27:55 | /srv/sw/netcdf-4.4.1/bin/ncgen -o big.nc big.cdl |
| 26-Jun-2017 11:27:55 | /srv/sw/netcdf-4.4.1/bin/ncgen -o in_rec_zero.nc in_rec_zero.cdl |
| 26-Jun-2017 11:27:55 | ncks -O -7 --cnk_dmn time,10 in.nc in_4c.nc |
| 26-Jun-2017 11:27:55 | /bin/bash: ncks: command not found |
| 26-Jun-2017 11:27:55 | Makefile:562: recipe for target 'in_4c.nc' failed |
| 26-Jun-2017 11:27:55 | make[2]: [in_4c.nc] Error 127 (ignored) |
| 26-Jun-2017 11:27:55 | /srv/sw/netcdf-4.4.1/bin/ncgen -k netCDF-4 -o in_grp_8.nc in_grp_8.cdl |
| 26-Jun-2017 11:27:55 | /srv/sw/netcdf-4.4.1/bin/ncgen -k netCDF-4 -o hdn.nc hdn.cdl |
| 26-Jun-2017 11:27:55 | /srv/sw/netcdf-4.4.1/bin/ncgen -k netCDF-4 -o mrd.nc mrd.cdl |
| 26-Jun-2017 11:27:55 | make[2]: Leaving directory '/srv/downloads/nco-4.6.1/data' |
| 26-Jun-2017 11:27:55 | Making all in src |
| 26-Jun-2017 11:27:55 | make[2]: Entering directory '/srv/downloads/nco-4.6.1/src' |
| 26-Jun-2017 11:27:55 | Making all in nco |
| 26-Jun-2017 11:27:55 | make[3]: Entering directory '/srv/downloads/nco-4.6.1/src/nco' |
| 26-Jun-2017 11:27:55 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_att_utl.lo -MD -MP -MF .deps/nco_att_utl.Tpo -c -o nco_att_utl.lo nco_att_utl.c |
| 26-Jun-2017 11:27:55 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_att_utl.lo -MD -MP -MF .deps/nco_att_utl.Tpo -c nco_att_utl.c -fPIC -DPIC -o .libs/nco_att_utl.o |
| 26-Jun-2017 11:27:55 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_att_utl.lo -MD -MP -MF .deps/nco_att_utl.Tpo -c nco_att_utl.c -o nco_att_utl.o >/dev/null 2>&1 |
| 26-Jun-2017 11:27:58 | mv -f .deps/nco_att_utl.Tpo .deps/nco_att_utl.Plo |
| 26-Jun-2017 11:27:58 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_aux.lo -MD -MP -MF .deps/nco_aux.Tpo -c -o nco_aux.lo nco_aux.c |
| 26-Jun-2017 11:27:58 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_aux.lo -MD -MP -MF .deps/nco_aux.Tpo -c nco_aux.c -fPIC -DPIC -o .libs/nco_aux.o |
| 26-Jun-2017 11:27:58 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_aux.lo -MD -MP -MF .deps/nco_aux.Tpo -c nco_aux.c -o nco_aux.o >/dev/null 2>&1 |
| 26-Jun-2017 11:27:59 | mv -f .deps/nco_aux.Tpo .deps/nco_aux.Plo |
| 26-Jun-2017 11:27:59 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_bnr.lo -MD -MP -MF .deps/nco_bnr.Tpo -c -o nco_bnr.lo nco_bnr.c |
| 26-Jun-2017 11:27:59 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_bnr.lo -MD -MP -MF .deps/nco_bnr.Tpo -c nco_bnr.c -fPIC -DPIC -o .libs/nco_bnr.o |
| 26-Jun-2017 11:27:59 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_bnr.lo -MD -MP -MF .deps/nco_bnr.Tpo -c nco_bnr.c -o nco_bnr.o >/dev/null 2>&1 |
| 26-Jun-2017 11:27:59 | mv -f .deps/nco_bnr.Tpo .deps/nco_bnr.Plo |
| 26-Jun-2017 11:27:59 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_cln_utl.lo -MD -MP -MF .deps/nco_cln_utl.Tpo -c -o nco_cln_utl.lo nco_cln_utl.c |
| 26-Jun-2017 11:27:59 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_cln_utl.lo -MD -MP -MF .deps/nco_cln_utl.Tpo -c nco_cln_utl.c -fPIC -DPIC -o .libs/nco_cln_utl.o |
| 26-Jun-2017 11:27:59 | nco_cln_utl.c: In function 'nco_cln_clc_org': |
| 26-Jun-2017 11:27:59 | nco_cln_utl.c:683:3: warning: implicit declaration of function 'strcasestr' [-Wimplicit-function-declaration] |
| 26-Jun-2017 11:27:59 | if(strcasestr(fl_bs_sng," from ") || strcasestr(fl_bs_sng," since ") || strcasestr(fl_bs_sng," after ")){ |
| 26-Jun-2017 11:27:59 | ^ |
| 26-Jun-2017 11:27:59 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_cln_utl.lo -MD -MP -MF .deps/nco_cln_utl.Tpo -c nco_cln_utl.c -o nco_cln_utl.o >/dev/null 2>&1 |
| 26-Jun-2017 11:27:59 | mv -f .deps/nco_cln_utl.Tpo .deps/nco_cln_utl.Plo |
| 26-Jun-2017 11:27:59 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_cnf_dmn.lo -MD -MP -MF .deps/nco_cnf_dmn.Tpo -c -o nco_cnf_dmn.lo nco_cnf_dmn.c |
| 26-Jun-2017 11:27:59 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_cnf_dmn.lo -MD -MP -MF .deps/nco_cnf_dmn.Tpo -c nco_cnf_dmn.c -fPIC -DPIC -o .libs/nco_cnf_dmn.o |
| 26-Jun-2017 11:28:00 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_cnf_dmn.lo -MD -MP -MF .deps/nco_cnf_dmn.Tpo -c nco_cnf_dmn.c -o nco_cnf_dmn.o >/dev/null 2>&1 |
| 26-Jun-2017 11:28:00 | mv -f .deps/nco_cnf_dmn.Tpo .deps/nco_cnf_dmn.Plo |
| 26-Jun-2017 11:28:00 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_cnf_typ.lo -MD -MP -MF .deps/nco_cnf_typ.Tpo -c -o nco_cnf_typ.lo nco_cnf_typ.c |
| 26-Jun-2017 11:28:00 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_cnf_typ.lo -MD -MP -MF .deps/nco_cnf_typ.Tpo -c nco_cnf_typ.c -fPIC -DPIC -o .libs/nco_cnf_typ.o |
| 26-Jun-2017 11:28:01 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_cnf_typ.lo -MD -MP -MF .deps/nco_cnf_typ.Tpo -c nco_cnf_typ.c -o nco_cnf_typ.o >/dev/null 2>&1 |
| 26-Jun-2017 11:28:01 | mv -f .deps/nco_cnf_typ.Tpo .deps/nco_cnf_typ.Plo |
| 26-Jun-2017 11:28:01 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_cnk.lo -MD -MP -MF .deps/nco_cnk.Tpo -c -o nco_cnk.lo nco_cnk.c |
| 26-Jun-2017 11:28:01 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_cnk.lo -MD -MP -MF .deps/nco_cnk.Tpo -c nco_cnk.c -fPIC -DPIC -o .libs/nco_cnk.o |
| 26-Jun-2017 11:28:02 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_cnk.lo -MD -MP -MF .deps/nco_cnk.Tpo -c nco_cnk.c -o nco_cnk.o >/dev/null 2>&1 |
| 26-Jun-2017 11:28:02 | mv -f .deps/nco_cnk.Tpo .deps/nco_cnk.Plo |
| 26-Jun-2017 11:28:02 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_cnv_arm.lo -MD -MP -MF .deps/nco_cnv_arm.Tpo -c -o nco_cnv_arm.lo nco_cnv_arm.c |
| 26-Jun-2017 11:28:02 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_cnv_arm.lo -MD -MP -MF .deps/nco_cnv_arm.Tpo -c nco_cnv_arm.c -fPIC -DPIC -o .libs/nco_cnv_arm.o |
| 26-Jun-2017 11:28:03 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_cnv_arm.lo -MD -MP -MF .deps/nco_cnv_arm.Tpo -c nco_cnv_arm.c -o nco_cnv_arm.o >/dev/null 2>&1 |
| 26-Jun-2017 11:28:03 | mv -f .deps/nco_cnv_arm.Tpo .deps/nco_cnv_arm.Plo |
| 26-Jun-2017 11:28:03 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_cnv_csm.lo -MD -MP -MF .deps/nco_cnv_csm.Tpo -c -o nco_cnv_csm.lo nco_cnv_csm.c |
| 26-Jun-2017 11:28:03 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_cnv_csm.lo -MD -MP -MF .deps/nco_cnv_csm.Tpo -c nco_cnv_csm.c -fPIC -DPIC -o .libs/nco_cnv_csm.o |
| 26-Jun-2017 11:28:03 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_cnv_csm.lo -MD -MP -MF .deps/nco_cnv_csm.Tpo -c nco_cnv_csm.c -o nco_cnv_csm.o >/dev/null 2>&1 |
| 26-Jun-2017 11:28:03 | mv -f .deps/nco_cnv_csm.Tpo .deps/nco_cnv_csm.Plo |
| 26-Jun-2017 11:28:03 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_ctl.lo -MD -MP -MF .deps/nco_ctl.Tpo -c -o nco_ctl.lo nco_ctl.c |
| 26-Jun-2017 11:28:03 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_ctl.lo -MD -MP -MF .deps/nco_ctl.Tpo -c nco_ctl.c -fPIC -DPIC -o .libs/nco_ctl.o |
| 26-Jun-2017 11:28:04 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_ctl.lo -MD -MP -MF .deps/nco_ctl.Tpo -c nco_ctl.c -o nco_ctl.o >/dev/null 2>&1 |
| 26-Jun-2017 11:28:04 | mv -f .deps/nco_ctl.Tpo .deps/nco_ctl.Plo |
| 26-Jun-2017 11:28:04 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_dbg.lo -MD -MP -MF .deps/nco_dbg.Tpo -c -o nco_dbg.lo nco_dbg.c |
| 26-Jun-2017 11:28:04 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_dbg.lo -MD -MP -MF .deps/nco_dbg.Tpo -c nco_dbg.c -fPIC -DPIC -o .libs/nco_dbg.o |
| 26-Jun-2017 11:28:04 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_dbg.lo -MD -MP -MF .deps/nco_dbg.Tpo -c nco_dbg.c -o nco_dbg.o >/dev/null 2>&1 |
| 26-Jun-2017 11:28:04 | mv -f .deps/nco_dbg.Tpo .deps/nco_dbg.Plo |
| 26-Jun-2017 11:28:04 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_dmn_utl.lo -MD -MP -MF .deps/nco_dmn_utl.Tpo -c -o nco_dmn_utl.lo nco_dmn_utl.c |
| 26-Jun-2017 11:28:04 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_dmn_utl.lo -MD -MP -MF .deps/nco_dmn_utl.Tpo -c nco_dmn_utl.c -fPIC -DPIC -o .libs/nco_dmn_utl.o |
| 26-Jun-2017 11:28:04 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_dmn_utl.lo -MD -MP -MF .deps/nco_dmn_utl.Tpo -c nco_dmn_utl.c -o nco_dmn_utl.o >/dev/null 2>&1 |
| 26-Jun-2017 11:28:04 | mv -f .deps/nco_dmn_utl.Tpo .deps/nco_dmn_utl.Plo |
| 26-Jun-2017 11:28:04 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_fl_utl.lo -MD -MP -MF .deps/nco_fl_utl.Tpo -c -o nco_fl_utl.lo nco_fl_utl.c |
| 26-Jun-2017 11:28:04 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_fl_utl.lo -MD -MP -MF .deps/nco_fl_utl.Tpo -c nco_fl_utl.c -fPIC -DPIC -o .libs/nco_fl_utl.o |
| 26-Jun-2017 11:28:05 | nco_fl_utl.c: In function 'nco_create_mode_prs': |
| 26-Jun-2017 11:28:05 | nco_fl_utl.c:62:3: warning: implicit declaration of function 'strcasestr' [-Wimplicit-function-declaration] |
| 26-Jun-2017 11:28:05 | if(strcasestr("classic",fl_fmt_sng) && !strcasestr(fl_fmt_sng,"netcdf4")){ |
| 26-Jun-2017 11:28:05 | ^ |
| 26-Jun-2017 11:28:05 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_fl_utl.lo -MD -MP -MF .deps/nco_fl_utl.Tpo -c nco_fl_utl.c -o nco_fl_utl.o >/dev/null 2>&1 |
| 26-Jun-2017 11:28:05 | mv -f .deps/nco_fl_utl.Tpo .deps/nco_fl_utl.Plo |
| 26-Jun-2017 11:28:05 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_grp_utl.lo -MD -MP -MF .deps/nco_grp_utl.Tpo -c -o nco_grp_utl.lo nco_grp_utl.c |
| 26-Jun-2017 11:28:05 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_grp_utl.lo -MD -MP -MF .deps/nco_grp_utl.Tpo -c nco_grp_utl.c -fPIC -DPIC -o .libs/nco_grp_utl.o |
| 26-Jun-2017 11:28:08 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_grp_utl.lo -MD -MP -MF .deps/nco_grp_utl.Tpo -c nco_grp_utl.c -o nco_grp_utl.o >/dev/null 2>&1 |
| 26-Jun-2017 11:28:11 | mv -f .deps/nco_grp_utl.Tpo .deps/nco_grp_utl.Plo |
| 26-Jun-2017 11:28:11 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_grp_trv.lo -MD -MP -MF .deps/nco_grp_trv.Tpo -c -o nco_grp_trv.lo nco_grp_trv.c |
| 26-Jun-2017 11:28:11 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_grp_trv.lo -MD -MP -MF .deps/nco_grp_trv.Tpo -c nco_grp_trv.c -fPIC -DPIC -o .libs/nco_grp_trv.o |
| 26-Jun-2017 11:28:11 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_grp_trv.lo -MD -MP -MF .deps/nco_grp_trv.Tpo -c nco_grp_trv.c -o nco_grp_trv.o >/dev/null 2>&1 |
| 26-Jun-2017 11:28:12 | mv -f .deps/nco_grp_trv.Tpo .deps/nco_grp_trv.Plo |
| 26-Jun-2017 11:28:12 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_lmt.lo -MD -MP -MF .deps/nco_lmt.Tpo -c -o nco_lmt.lo nco_lmt.c |
| 26-Jun-2017 11:28:12 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_lmt.lo -MD -MP -MF .deps/nco_lmt.Tpo -c nco_lmt.c -fPIC -DPIC -o .libs/nco_lmt.o |
| 26-Jun-2017 11:28:14 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_lmt.lo -MD -MP -MF .deps/nco_lmt.Tpo -c nco_lmt.c -o nco_lmt.o >/dev/null 2>&1 |
| 26-Jun-2017 11:28:17 | mv -f .deps/nco_lmt.Tpo .deps/nco_lmt.Plo |
| 26-Jun-2017 11:28:17 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_lst_utl.lo -MD -MP -MF .deps/nco_lst_utl.Tpo -c -o nco_lst_utl.lo nco_lst_utl.c |
| 26-Jun-2017 11:28:18 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_lst_utl.lo -MD -MP -MF .deps/nco_lst_utl.Tpo -c nco_lst_utl.c -fPIC -DPIC -o .libs/nco_lst_utl.o |
| 26-Jun-2017 11:28:18 | nco_lst_utl.c: In function 'nco_fmt_sng_printf_subst': |
| 26-Jun-2017 11:28:18 | nco_lst_utl.c:38:23: warning: unknown escape sequence: '\.' |
| 26-Jun-2017 11:28:18 | const char rx_sng[]="%([+-0#'I])?([0-9]*)?([\.?[0-9]*)?([h+l+Ljzt])?[bcdeEfFgGiosuxX]"; /* [sng] Regular expression pattern */ |
| 26-Jun-2017 11:28:18 | ^ |
| 26-Jun-2017 11:28:20 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_lst_utl.lo -MD -MP -MF .deps/nco_lst_utl.Tpo -c nco_lst_utl.c -o nco_lst_utl.o >/dev/null 2>&1 |
| 26-Jun-2017 11:28:22 | mv -f .deps/nco_lst_utl.Tpo .deps/nco_lst_utl.Plo |
| 26-Jun-2017 11:28:22 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_md5.lo -MD -MP -MF .deps/nco_md5.Tpo -c -o nco_md5.lo nco_md5.c |
| 26-Jun-2017 11:28:22 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_md5.lo -MD -MP -MF .deps/nco_md5.Tpo -c nco_md5.c -fPIC -DPIC -o .libs/nco_md5.o |
| 26-Jun-2017 11:28:23 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_md5.lo -MD -MP -MF .deps/nco_md5.Tpo -c nco_md5.c -o nco_md5.o >/dev/null 2>&1 |
| 26-Jun-2017 11:28:23 | mv -f .deps/nco_md5.Tpo .deps/nco_md5.Plo |
| 26-Jun-2017 11:28:23 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_mmr.lo -MD -MP -MF .deps/nco_mmr.Tpo -c -o nco_mmr.lo nco_mmr.c |
| 26-Jun-2017 11:28:23 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_mmr.lo -MD -MP -MF .deps/nco_mmr.Tpo -c nco_mmr.c -fPIC -DPIC -o .libs/nco_mmr.o |
| 26-Jun-2017 11:28:23 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_mmr.lo -MD -MP -MF .deps/nco_mmr.Tpo -c nco_mmr.c -o nco_mmr.o >/dev/null 2>&1 |
| 26-Jun-2017 11:28:23 | mv -f .deps/nco_mmr.Tpo .deps/nco_mmr.Plo |
| 26-Jun-2017 11:28:23 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_msa.lo -MD -MP -MF .deps/nco_msa.Tpo -c -o nco_msa.lo nco_msa.c |
| 26-Jun-2017 11:28:23 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_msa.lo -MD -MP -MF .deps/nco_msa.Tpo -c nco_msa.c -fPIC -DPIC -o .libs/nco_msa.o |
| 26-Jun-2017 11:28:24 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_msa.lo -MD -MP -MF .deps/nco_msa.Tpo -c nco_msa.c -o nco_msa.o >/dev/null 2>&1 |
| 26-Jun-2017 11:28:24 | mv -f .deps/nco_msa.Tpo .deps/nco_msa.Plo |
| 26-Jun-2017 11:28:24 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_mss_val.lo -MD -MP -MF .deps/nco_mss_val.Tpo -c -o nco_mss_val.lo nco_mss_val.c |
| 26-Jun-2017 11:28:24 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_mss_val.lo -MD -MP -MF .deps/nco_mss_val.Tpo -c nco_mss_val.c -fPIC -DPIC -o .libs/nco_mss_val.o |
| 26-Jun-2017 11:28:24 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_mss_val.lo -MD -MP -MF .deps/nco_mss_val.Tpo -c nco_mss_val.c -o nco_mss_val.o >/dev/null 2>&1 |
| 26-Jun-2017 11:28:25 | mv -f .deps/nco_mss_val.Tpo .deps/nco_mss_val.Plo |
| 26-Jun-2017 11:28:25 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_netcdf.lo -MD -MP -MF .deps/nco_netcdf.Tpo -c -o nco_netcdf.lo nco_netcdf.c |
| 26-Jun-2017 11:28:25 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_netcdf.lo -MD -MP -MF .deps/nco_netcdf.Tpo -c nco_netcdf.c -fPIC -DPIC -o .libs/nco_netcdf.o |
| 26-Jun-2017 11:28:25 | nco_netcdf.c: In function 'nco_open_mem': |
| 26-Jun-2017 11:28:25 | nco_netcdf.c:710:3: warning: implicit declaration of function 'nc_open_mem' [-Wimplicit-function-declaration] |
| 26-Jun-2017 11:28:25 | rcd=nc_open_mem(fl_nm,mode,sz,void_ptr,nc_id); |
| 26-Jun-2017 11:28:25 | ^ |
| 26-Jun-2017 11:28:25 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_netcdf.lo -MD -MP -MF .deps/nco_netcdf.Tpo -c nco_netcdf.c -o nco_netcdf.o >/dev/null 2>&1 |
| 26-Jun-2017 11:28:26 | mv -f .deps/nco_netcdf.Tpo .deps/nco_netcdf.Plo |
| 26-Jun-2017 11:28:26 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_omp.lo -MD -MP -MF .deps/nco_omp.Tpo -c -o nco_omp.lo nco_omp.c |
| 26-Jun-2017 11:28:26 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_omp.lo -MD -MP -MF .deps/nco_omp.Tpo -c nco_omp.c -fPIC -DPIC -o .libs/nco_omp.o |
| 26-Jun-2017 11:28:26 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_omp.lo -MD -MP -MF .deps/nco_omp.Tpo -c nco_omp.c -o nco_omp.o >/dev/null 2>&1 |
| 26-Jun-2017 11:28:26 | mv -f .deps/nco_omp.Tpo .deps/nco_omp.Plo |
| 26-Jun-2017 11:28:26 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_pck.lo -MD -MP -MF .deps/nco_pck.Tpo -c -o nco_pck.lo nco_pck.c |
| 26-Jun-2017 11:28:26 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_pck.lo -MD -MP -MF .deps/nco_pck.Tpo -c nco_pck.c -fPIC -DPIC -o .libs/nco_pck.o |
| 26-Jun-2017 11:28:26 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_pck.lo -MD -MP -MF .deps/nco_pck.Tpo -c nco_pck.c -o nco_pck.o >/dev/null 2>&1 |
| 26-Jun-2017 11:28:26 | mv -f .deps/nco_pck.Tpo .deps/nco_pck.Plo |
| 26-Jun-2017 11:28:26 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_ppc.lo -MD -MP -MF .deps/nco_ppc.Tpo -c -o nco_ppc.lo nco_ppc.c |
| 26-Jun-2017 11:28:26 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_ppc.lo -MD -MP -MF .deps/nco_ppc.Tpo -c nco_ppc.c -fPIC -DPIC -o .libs/nco_ppc.o |
| 26-Jun-2017 11:28:27 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_ppc.lo -MD -MP -MF .deps/nco_ppc.Tpo -c nco_ppc.c -o nco_ppc.o >/dev/null 2>&1 |
| 26-Jun-2017 11:28:27 | mv -f .deps/nco_ppc.Tpo .deps/nco_ppc.Plo |
| 26-Jun-2017 11:28:27 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_prn.lo -MD -MP -MF .deps/nco_prn.Tpo -c -o nco_prn.lo nco_prn.c |
| 26-Jun-2017 11:28:27 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_prn.lo -MD -MP -MF .deps/nco_prn.Tpo -c nco_prn.c -fPIC -DPIC -o .libs/nco_prn.o |
| 26-Jun-2017 11:28:28 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_prn.lo -MD -MP -MF .deps/nco_prn.Tpo -c nco_prn.c -o nco_prn.o >/dev/null 2>&1 |
| 26-Jun-2017 11:28:29 | mv -f .deps/nco_prn.Tpo .deps/nco_prn.Plo |
| 26-Jun-2017 11:28:29 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_rec_var.lo -MD -MP -MF .deps/nco_rec_var.Tpo -c -o nco_rec_var.lo nco_rec_var.c |
| 26-Jun-2017 11:28:29 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_rec_var.lo -MD -MP -MF .deps/nco_rec_var.Tpo -c nco_rec_var.c -fPIC -DPIC -o .libs/nco_rec_var.o |
| 26-Jun-2017 11:28:29 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_rec_var.lo -MD -MP -MF .deps/nco_rec_var.Tpo -c nco_rec_var.c -o nco_rec_var.o >/dev/null 2>&1 |
| 26-Jun-2017 11:28:29 | mv -f .deps/nco_rec_var.Tpo .deps/nco_rec_var.Plo |
| 26-Jun-2017 11:28:29 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_rgr.lo -MD -MP -MF .deps/nco_rgr.Tpo -c -o nco_rgr.lo nco_rgr.c |
| 26-Jun-2017 11:28:29 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_rgr.lo -MD -MP -MF .deps/nco_rgr.Tpo -c nco_rgr.c -fPIC -DPIC -o .libs/nco_rgr.o |
| 26-Jun-2017 11:28:29 | nco_rgr.c: In function 'nco_rgr_map': |
| 26-Jun-2017 11:28:29 | nco_rgr.c:1607:7: warning: implicit declaration of function 'strcasestr' [-Wimplicit-function-declaration] |
| 26-Jun-2017 11:28:29 | if(!strcasestr(cf->unt_sng[0],"degrees_")) (void)fprintf(stderr,"%s: WARNING %s reports first coordinates variable %s has weird units attribute = %s. May not detect correct ordering of latitude and longitude coordinates\n",nco_prg_nm_get(),fnc_nm,cf->crd_nm[0],cf->unt_sng[0]); |
| 26-Jun-2017 11:28:29 | ^ |
| 26-Jun-2017 11:28:33 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_rgr.lo -MD -MP -MF .deps/nco_rgr.Tpo -c nco_rgr.c -o nco_rgr.o >/dev/null 2>&1 |
| 26-Jun-2017 11:28:36 | mv -f .deps/nco_rgr.Tpo .deps/nco_rgr.Plo |
| 26-Jun-2017 11:28:36 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_rth_flt.lo -MD -MP -MF .deps/nco_rth_flt.Tpo -c -o nco_rth_flt.lo nco_rth_flt.c |
| 26-Jun-2017 11:28:36 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_rth_flt.lo -MD -MP -MF .deps/nco_rth_flt.Tpo -c nco_rth_flt.c -fPIC -DPIC -o .libs/nco_rth_flt.o |
| 26-Jun-2017 11:28:36 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_rth_flt.lo -MD -MP -MF .deps/nco_rth_flt.Tpo -c nco_rth_flt.c -o nco_rth_flt.o >/dev/null 2>&1 |
| 26-Jun-2017 11:28:36 | mv -f .deps/nco_rth_flt.Tpo .deps/nco_rth_flt.Plo |
| 26-Jun-2017 11:28:36 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_rth_utl.lo -MD -MP -MF .deps/nco_rth_utl.Tpo -c -o nco_rth_utl.lo nco_rth_utl.c |
| 26-Jun-2017 11:28:36 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_rth_utl.lo -MD -MP -MF .deps/nco_rth_utl.Tpo -c nco_rth_utl.c -fPIC -DPIC -o .libs/nco_rth_utl.o |
| 26-Jun-2017 11:28:37 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_rth_utl.lo -MD -MP -MF .deps/nco_rth_utl.Tpo -c nco_rth_utl.c -o nco_rth_utl.o >/dev/null 2>&1 |
| 26-Jun-2017 11:28:37 | mv -f .deps/nco_rth_utl.Tpo .deps/nco_rth_utl.Plo |
| 26-Jun-2017 11:28:37 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_scl_utl.lo -MD -MP -MF .deps/nco_scl_utl.Tpo -c -o nco_scl_utl.lo nco_scl_utl.c |
| 26-Jun-2017 11:28:37 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_scl_utl.lo -MD -MP -MF .deps/nco_scl_utl.Tpo -c nco_scl_utl.c -fPIC -DPIC -o .libs/nco_scl_utl.o |
| 26-Jun-2017 11:28:37 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_scl_utl.lo -MD -MP -MF .deps/nco_scl_utl.Tpo -c nco_scl_utl.c -o nco_scl_utl.o >/dev/null 2>&1 |
| 26-Jun-2017 11:28:37 | mv -f .deps/nco_scl_utl.Tpo .deps/nco_scl_utl.Plo |
| 26-Jun-2017 11:28:37 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_scm.lo -MD -MP -MF .deps/nco_scm.Tpo -c -o nco_scm.lo nco_scm.c |
| 26-Jun-2017 11:28:37 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_scm.lo -MD -MP -MF .deps/nco_scm.Tpo -c nco_scm.c -fPIC -DPIC -o .libs/nco_scm.o |
| 26-Jun-2017 11:28:37 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_scm.lo -MD -MP -MF .deps/nco_scm.Tpo -c nco_scm.c -o nco_scm.o >/dev/null 2>&1 |
| 26-Jun-2017 11:28:37 | mv -f .deps/nco_scm.Tpo .deps/nco_scm.Plo |
| 26-Jun-2017 11:28:37 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_sld.lo -MD -MP -MF .deps/nco_sld.Tpo -c -o nco_sld.lo nco_sld.c |
| 26-Jun-2017 11:28:37 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_sld.lo -MD -MP -MF .deps/nco_sld.Tpo -c nco_sld.c -fPIC -DPIC -o .libs/nco_sld.o |
| 26-Jun-2017 11:28:38 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_sld.lo -MD -MP -MF .deps/nco_sld.Tpo -c nco_sld.c -o nco_sld.o >/dev/null 2>&1 |
| 26-Jun-2017 11:28:38 | mv -f .deps/nco_sld.Tpo .deps/nco_sld.Plo |
| 26-Jun-2017 11:28:38 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_sng_utl.lo -MD -MP -MF .deps/nco_sng_utl.Tpo -c -o nco_sng_utl.lo nco_sng_utl.c |
| 26-Jun-2017 11:28:38 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_sng_utl.lo -MD -MP -MF .deps/nco_sng_utl.Tpo -c nco_sng_utl.c -fPIC -DPIC -o .libs/nco_sng_utl.o |
| 26-Jun-2017 11:28:38 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_sng_utl.lo -MD -MP -MF .deps/nco_sng_utl.Tpo -c nco_sng_utl.c -o nco_sng_utl.o >/dev/null 2>&1 |
| 26-Jun-2017 11:28:38 | mv -f .deps/nco_sng_utl.Tpo .deps/nco_sng_utl.Plo |
| 26-Jun-2017 11:28:38 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_srm.lo -MD -MP -MF .deps/nco_srm.Tpo -c -o nco_srm.lo nco_srm.c |
| 26-Jun-2017 11:28:38 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_srm.lo -MD -MP -MF .deps/nco_srm.Tpo -c nco_srm.c -fPIC -DPIC -o .libs/nco_srm.o |
| 26-Jun-2017 11:28:38 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_srm.lo -MD -MP -MF .deps/nco_srm.Tpo -c nco_srm.c -o nco_srm.o >/dev/null 2>&1 |
| 26-Jun-2017 11:28:39 | mv -f .deps/nco_srm.Tpo .deps/nco_srm.Plo |
| 26-Jun-2017 11:28:39 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_var_avg.lo -MD -MP -MF .deps/nco_var_avg.Tpo -c -o nco_var_avg.lo nco_var_avg.c |
| 26-Jun-2017 11:28:39 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_var_avg.lo -MD -MP -MF .deps/nco_var_avg.Tpo -c nco_var_avg.c -fPIC -DPIC -o .libs/nco_var_avg.o |
| 26-Jun-2017 11:28:39 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_var_avg.lo -MD -MP -MF .deps/nco_var_avg.Tpo -c nco_var_avg.c -o nco_var_avg.o >/dev/null 2>&1 |
| 26-Jun-2017 11:28:40 | mv -f .deps/nco_var_avg.Tpo .deps/nco_var_avg.Plo |
| 26-Jun-2017 11:28:40 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_var_lst.lo -MD -MP -MF .deps/nco_var_lst.Tpo -c -o nco_var_lst.lo nco_var_lst.c |
| 26-Jun-2017 11:28:40 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_var_lst.lo -MD -MP -MF .deps/nco_var_lst.Tpo -c nco_var_lst.c -fPIC -DPIC -o .libs/nco_var_lst.o |
| 26-Jun-2017 11:28:40 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_var_lst.lo -MD -MP -MF .deps/nco_var_lst.Tpo -c nco_var_lst.c -o nco_var_lst.o >/dev/null 2>&1 |
| 26-Jun-2017 11:28:41 | mv -f .deps/nco_var_lst.Tpo .deps/nco_var_lst.Plo |
| 26-Jun-2017 11:28:41 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_var_rth.lo -MD -MP -MF .deps/nco_var_rth.Tpo -c -o nco_var_rth.lo nco_var_rth.c |
| 26-Jun-2017 11:28:41 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_var_rth.lo -MD -MP -MF .deps/nco_var_rth.Tpo -c nco_var_rth.c -fPIC -DPIC -o .libs/nco_var_rth.o |
| 26-Jun-2017 11:28:42 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_var_rth.lo -MD -MP -MF .deps/nco_var_rth.Tpo -c nco_var_rth.c -o nco_var_rth.o >/dev/null 2>&1 |
| 26-Jun-2017 11:28:43 | mv -f .deps/nco_var_rth.Tpo .deps/nco_var_rth.Plo |
| 26-Jun-2017 11:28:43 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_var_scv.lo -MD -MP -MF .deps/nco_var_scv.Tpo -c -o nco_var_scv.lo nco_var_scv.c |
| 26-Jun-2017 11:28:43 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_var_scv.lo -MD -MP -MF .deps/nco_var_scv.Tpo -c nco_var_scv.c -fPIC -DPIC -o .libs/nco_var_scv.o |
| 26-Jun-2017 11:28:43 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_var_scv.lo -MD -MP -MF .deps/nco_var_scv.Tpo -c nco_var_scv.c -o nco_var_scv.o >/dev/null 2>&1 |
| 26-Jun-2017 11:28:44 | mv -f .deps/nco_var_scv.Tpo .deps/nco_var_scv.Plo |
| 26-Jun-2017 11:28:44 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_var_utl.lo -MD -MP -MF .deps/nco_var_utl.Tpo -c -o nco_var_utl.lo nco_var_utl.c |
| 26-Jun-2017 11:28:44 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_var_utl.lo -MD -MP -MF .deps/nco_var_utl.Tpo -c nco_var_utl.c -fPIC -DPIC -o .libs/nco_var_utl.o |
| 26-Jun-2017 11:28:44 | libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_var_utl.lo -MD -MP -MF .deps/nco_var_utl.Tpo -c nco_var_utl.c -o nco_var_utl.o >/dev/null 2>&1 |
| 26-Jun-2017 11:28:45 | mv -f .deps/nco_var_utl.Tpo .deps/nco_var_utl.Plo |
| 26-Jun-2017 11:28:45 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=link gcc -std=gnu99 -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -release 4.6.1-beta01 -L/srv/sw/netcdf-4.4.1/lib -lnetcdf -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu -o libnco.la -rpath /srv/sw/nco-4.6.1/lib nco_att_utl.lo nco_aux.lo nco_bnr.lo nco_cln_utl.lo nco_cnf_dmn.lo nco_cnf_typ.lo nco_cnk.lo nco_cnv_arm.lo nco_cnv_csm.lo nco_ctl.lo nco_dbg.lo nco_dmn_utl.lo nco_fl_utl.lo nco_grp_utl.lo nco_grp_trv.lo nco_lmt.lo nco_lst_utl.lo nco_md5.lo nco_mmr.lo nco_msa.lo nco_mss_val.lo nco_netcdf.lo nco_omp.lo nco_pck.lo nco_ppc.lo nco_prn.lo nco_rec_var.lo nco_rgr.lo nco_rth_flt.lo nco_rth_utl.lo nco_scl_utl.lo nco_scm.lo nco_sld.lo nco_sng_utl.lo nco_srm.lo nco_var_avg.lo nco_var_lst.lo nco_var_rth.lo nco_var_scv.lo nco_var_utl.lo -ludunits2 -lexpat -lm -lnetcdf -lnetcdf -ludunits2 |
| 26-Jun-2017 11:28:45 | libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.9/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.9/crtbeginS.o .libs/nco_att_utl.o .libs/nco_aux.o .libs/nco_bnr.o .libs/nco_cln_utl.o .libs/nco_cnf_dmn.o .libs/nco_cnf_typ.o .libs/nco_cnk.o .libs/nco_cnv_arm.o .libs/nco_cnv_csm.o .libs/nco_ctl.o .libs/nco_dbg.o .libs/nco_dmn_utl.o .libs/nco_fl_utl.o .libs/nco_grp_utl.o .libs/nco_grp_trv.o .libs/nco_lmt.o .libs/nco_lst_utl.o .libs/nco_md5.o .libs/nco_mmr.o .libs/nco_msa.o .libs/nco_mss_val.o .libs/nco_netcdf.o .libs/nco_omp.o .libs/nco_pck.o .libs/nco_ppc.o .libs/nco_prn.o .libs/nco_rec_var.o .libs/nco_rgr.o .libs/nco_rth_flt.o .libs/nco_rth_utl.o .libs/nco_scl_utl.o .libs/nco_scm.o .libs/nco_sld.o .libs/nco_sng_utl.o .libs/nco_srm.o .libs/nco_var_avg.o .libs/nco_var_lst.o .libs/nco_var_rth.o .libs/nco_var_scv.o .libs/nco_var_utl.o -Wl,-rpath -Wl,/srv/sw/netcdf-4.4.1/lib -Wl,-rpath -Wl,/srv/sw/netcdf-4.4.1/lib -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu /usr/lib/x86_64-linux-gnu/libexpat.so /srv/sw/netcdf-4.4.1/lib/libnetcdf.so -ludunits2 -L/usr/lib/gcc/x86_64-linux-gnu/4.9 -L/usr/lib/gcc/x86_64-linux-gnu/4.9/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.9/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.9/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.9/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.9/../../../x86_64-linux-gnu/crtn.o -O2 -fopenmp -fopenmp -Wl,-soname -Wl,libnco-4.6.1-beta01.so -o .libs/libnco-4.6.1-beta01.so |
| 26-Jun-2017 11:28:45 | libtool: link: (cd ".libs" && rm -f "libnco.so" && ln -s "libnco-4.6.1-beta01.so" "libnco.so") |
| 26-Jun-2017 11:28:45 | libtool: link: ar cru .libs/libnco.a nco_att_utl.o nco_aux.o nco_bnr.o nco_cln_utl.o nco_cnf_dmn.o nco_cnf_typ.o nco_cnk.o nco_cnv_arm.o nco_cnv_csm.o nco_ctl.o nco_dbg.o nco_dmn_utl.o nco_fl_utl.o nco_grp_utl.o nco_grp_trv.o nco_lmt.o nco_lst_utl.o nco_md5.o nco_mmr.o nco_msa.o nco_mss_val.o nco_netcdf.o nco_omp.o nco_pck.o nco_ppc.o nco_prn.o nco_rec_var.o nco_rgr.o nco_rth_flt.o nco_rth_utl.o nco_scl_utl.o nco_scm.o nco_sld.o nco_sng_utl.o nco_srm.o nco_var_avg.o nco_var_lst.o nco_var_rth.o nco_var_scv.o nco_var_utl.o |
| 26-Jun-2017 11:28:45 | libtool: link: ranlib .libs/libnco.a |
| 26-Jun-2017 11:28:45 | libtool: link: ( cd ".libs" && rm -f "libnco.la" && ln -s "../libnco.la" "libnco.la" ) |
| 26-Jun-2017 11:28:45 | gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT ncatted.o -MD -MP -MF .deps/ncatted.Tpo -c -o ncatted.o ncatted.c |
| 26-Jun-2017 11:28:45 | mv -f .deps/ncatted.Tpo .deps/ncatted.Po |
| 26-Jun-2017 11:28:45 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=link gcc -std=gnu99 -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -L/srv/sw/netcdf-4.4.1/lib -lnetcdf -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu -o ncatted ncatted.o libnco.la -ludunits2 -lexpat -lm -lnetcdf -lnetcdf -ludunits2 |
| 26-Jun-2017 11:28:45 | libtool: link: gcc -std=gnu99 -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -o .libs/ncatted ncatted.o -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu ./.libs/libnco.so /usr/lib/x86_64-linux-gnu/libexpat.so -lm /srv/sw/netcdf-4.4.1/lib/libnetcdf.so -ludunits2 -fopenmp -Wl,-rpath -Wl,/srv/sw/nco-4.6.1/lib -Wl,-rpath -Wl,/srv/sw/netcdf-4.4.1/lib |
| 26-Jun-2017 11:28:45 | gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT ncbo.o -MD -MP -MF .deps/ncbo.Tpo -c -o ncbo.o ncbo.c |
| 26-Jun-2017 11:28:46 | mv -f .deps/ncbo.Tpo .deps/ncbo.Po |
| 26-Jun-2017 11:28:46 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=link gcc -std=gnu99 -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -L/srv/sw/netcdf-4.4.1/lib -lnetcdf -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu -o ncbo ncbo.o libnco.la -ludunits2 -lexpat -lm -lnetcdf -lnetcdf -ludunits2 |
| 26-Jun-2017 11:28:46 | libtool: link: gcc -std=gnu99 -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -o .libs/ncbo ncbo.o -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu ./.libs/libnco.so /usr/lib/x86_64-linux-gnu/libexpat.so -lm /srv/sw/netcdf-4.4.1/lib/libnetcdf.so -ludunits2 -fopenmp -Wl,-rpath -Wl,/srv/sw/nco-4.6.1/lib -Wl,-rpath -Wl,/srv/sw/netcdf-4.4.1/lib |
| 26-Jun-2017 11:28:46 | gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT ncecat.o -MD -MP -MF .deps/ncecat.Tpo -c -o ncecat.o ncecat.c |
| 26-Jun-2017 11:28:46 | mv -f .deps/ncecat.Tpo .deps/ncecat.Po |
| 26-Jun-2017 11:28:46 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=link gcc -std=gnu99 -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -L/srv/sw/netcdf-4.4.1/lib -lnetcdf -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu -o ncecat ncecat.o libnco.la -ludunits2 -lexpat -lm -lnetcdf -lnetcdf -ludunits2 |
| 26-Jun-2017 11:28:47 | libtool: link: gcc -std=gnu99 -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -o .libs/ncecat ncecat.o -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu ./.libs/libnco.so /usr/lib/x86_64-linux-gnu/libexpat.so -lm /srv/sw/netcdf-4.4.1/lib/libnetcdf.so -ludunits2 -fopenmp -Wl,-rpath -Wl,/srv/sw/nco-4.6.1/lib -Wl,-rpath -Wl,/srv/sw/netcdf-4.4.1/lib |
| 26-Jun-2017 11:28:47 | gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT ncflint.o -MD -MP -MF .deps/ncflint.Tpo -c -o ncflint.o ncflint.c |
| 26-Jun-2017 11:28:47 | mv -f .deps/ncflint.Tpo .deps/ncflint.Po |
| 26-Jun-2017 11:28:47 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=link gcc -std=gnu99 -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -L/srv/sw/netcdf-4.4.1/lib -lnetcdf -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu -o ncflint ncflint.o libnco.la -ludunits2 -lexpat -lm -lnetcdf -lnetcdf -ludunits2 |
| 26-Jun-2017 11:28:47 | libtool: link: gcc -std=gnu99 -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -o .libs/ncflint ncflint.o -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu ./.libs/libnco.so /usr/lib/x86_64-linux-gnu/libexpat.so -lm /srv/sw/netcdf-4.4.1/lib/libnetcdf.so -ludunits2 -fopenmp -Wl,-rpath -Wl,/srv/sw/nco-4.6.1/lib -Wl,-rpath -Wl,/srv/sw/netcdf-4.4.1/lib |
| 26-Jun-2017 11:28:47 | gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT ncks.o -MD -MP -MF .deps/ncks.Tpo -c -o ncks.o ncks.c |
| 26-Jun-2017 11:28:48 | mv -f .deps/ncks.Tpo .deps/ncks.Po |
| 26-Jun-2017 11:28:48 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=link gcc -std=gnu99 -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -L/srv/sw/netcdf-4.4.1/lib -lnetcdf -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu -o ncks ncks.o libnco.la -ludunits2 -lexpat -lm -lnetcdf -lnetcdf -ludunits2 |
| 26-Jun-2017 11:28:48 | libtool: link: gcc -std=gnu99 -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -o .libs/ncks ncks.o -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu ./.libs/libnco.so /usr/lib/x86_64-linux-gnu/libexpat.so -lm /srv/sw/netcdf-4.4.1/lib/libnetcdf.so -ludunits2 -fopenmp -Wl,-rpath -Wl,/srv/sw/nco-4.6.1/lib -Wl,-rpath -Wl,/srv/sw/netcdf-4.4.1/lib |
| 26-Jun-2017 11:28:48 | gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT ncpdq.o -MD -MP -MF .deps/ncpdq.Tpo -c -o ncpdq.o ncpdq.c |
| 26-Jun-2017 11:28:48 | mv -f .deps/ncpdq.Tpo .deps/ncpdq.Po |
| 26-Jun-2017 11:28:48 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=link gcc -std=gnu99 -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -L/srv/sw/netcdf-4.4.1/lib -lnetcdf -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu -o ncpdq ncpdq.o libnco.la -ludunits2 -lexpat -lm -lnetcdf -lnetcdf -ludunits2 |
| 26-Jun-2017 11:28:48 | libtool: link: gcc -std=gnu99 -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -o .libs/ncpdq ncpdq.o -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu ./.libs/libnco.so /usr/lib/x86_64-linux-gnu/libexpat.so -lm /srv/sw/netcdf-4.4.1/lib/libnetcdf.so -ludunits2 -fopenmp -Wl,-rpath -Wl,/srv/sw/nco-4.6.1/lib -Wl,-rpath -Wl,/srv/sw/netcdf-4.4.1/lib |
| 26-Jun-2017 11:28:48 | gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT ncra.o -MD -MP -MF .deps/ncra.Tpo -c -o ncra.o ncra.c |
| 26-Jun-2017 11:28:49 | mv -f .deps/ncra.Tpo .deps/ncra.Po |
| 26-Jun-2017 11:28:49 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=link gcc -std=gnu99 -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -L/srv/sw/netcdf-4.4.1/lib -lnetcdf -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu -o ncra ncra.o libnco.la -ludunits2 -lexpat -lm -lnetcdf -lnetcdf -ludunits2 |
| 26-Jun-2017 11:28:49 | libtool: link: gcc -std=gnu99 -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -o .libs/ncra ncra.o -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu ./.libs/libnco.so /usr/lib/x86_64-linux-gnu/libexpat.so -lm /srv/sw/netcdf-4.4.1/lib/libnetcdf.so -ludunits2 -fopenmp -Wl,-rpath -Wl,/srv/sw/nco-4.6.1/lib -Wl,-rpath -Wl,/srv/sw/netcdf-4.4.1/lib |
| 26-Jun-2017 11:28:49 | gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT ncrename.o -MD -MP -MF .deps/ncrename.Tpo -c -o ncrename.o ncrename.c |
| 26-Jun-2017 11:28:50 | mv -f .deps/ncrename.Tpo .deps/ncrename.Po |
| 26-Jun-2017 11:28:50 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=link gcc -std=gnu99 -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -L/srv/sw/netcdf-4.4.1/lib -lnetcdf -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu -o ncrename ncrename.o libnco.la -ludunits2 -lexpat -lm -lnetcdf -lnetcdf -ludunits2 |
| 26-Jun-2017 11:28:50 | libtool: link: gcc -std=gnu99 -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -o .libs/ncrename ncrename.o -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu ./.libs/libnco.so /usr/lib/x86_64-linux-gnu/libexpat.so -lm /srv/sw/netcdf-4.4.1/lib/libnetcdf.so -ludunits2 -fopenmp -Wl,-rpath -Wl,/srv/sw/nco-4.6.1/lib -Wl,-rpath -Wl,/srv/sw/netcdf-4.4.1/lib |
| 26-Jun-2017 11:28:50 | make[3]: Leaving directory '/srv/downloads/nco-4.6.1/src/nco' |
| 26-Jun-2017 11:28:50 | Making all in nco_c++ |
| 26-Jun-2017 11:28:50 | make[3]: Entering directory '/srv/downloads/nco-4.6.1/src/nco_c++' |
| 26-Jun-2017 11:28:50 | /bin/bash ../../libtool --tag=CXX --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT libnco_c___la-nco_att.lo -MD -MP -MF .deps/libnco_c___la-nco_att.Tpo -c -o libnco_c___la-nco_att.lo `test -f 'nco_att.cc' || echo './'`nco_att.cc |
| 26-Jun-2017 11:28:50 | libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT libnco_c___la-nco_att.lo -MD -MP -MF .deps/libnco_c___la-nco_att.Tpo -c nco_att.cc -fPIC -DPIC -o .libs/libnco_c___la-nco_att.o |
| 26-Jun-2017 11:28:51 | libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT libnco_c___la-nco_att.lo -MD -MP -MF .deps/libnco_c___la-nco_att.Tpo -c nco_att.cc -o libnco_c___la-nco_att.o >/dev/null 2>&1 |
| 26-Jun-2017 11:28:51 | mv -f .deps/libnco_c___la-nco_att.Tpo .deps/libnco_c___la-nco_att.Plo |
| 26-Jun-2017 11:28:51 | /bin/bash ../../libtool --tag=CXX --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT libnco_c___la-nco_dmn.lo -MD -MP -MF .deps/libnco_c___la-nco_dmn.Tpo -c -o libnco_c___la-nco_dmn.lo `test -f 'nco_dmn.cc' || echo './'`nco_dmn.cc |
| 26-Jun-2017 11:28:51 | libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT libnco_c___la-nco_dmn.lo -MD -MP -MF .deps/libnco_c___la-nco_dmn.Tpo -c nco_dmn.cc -fPIC -DPIC -o .libs/libnco_c___la-nco_dmn.o |
| 26-Jun-2017 11:28:52 | libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT libnco_c___la-nco_dmn.lo -MD -MP -MF .deps/libnco_c___la-nco_dmn.Tpo -c nco_dmn.cc -o libnco_c___la-nco_dmn.o >/dev/null 2>&1 |
| 26-Jun-2017 11:28:52 | mv -f .deps/libnco_c___la-nco_dmn.Tpo .deps/libnco_c___la-nco_dmn.Plo |
| 26-Jun-2017 11:28:52 | /bin/bash ../../libtool --tag=CXX --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT libnco_c___la-nco_fl.lo -MD -MP -MF .deps/libnco_c___la-nco_fl.Tpo -c -o libnco_c___la-nco_fl.lo `test -f 'nco_fl.cc' || echo './'`nco_fl.cc |
| 26-Jun-2017 11:28:52 | libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT libnco_c___la-nco_fl.lo -MD -MP -MF .deps/libnco_c___la-nco_fl.Tpo -c nco_fl.cc -fPIC -DPIC -o .libs/libnco_c___la-nco_fl.o |
| 26-Jun-2017 11:28:52 | libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT libnco_c___la-nco_fl.lo -MD -MP -MF .deps/libnco_c___la-nco_fl.Tpo -c nco_fl.cc -o libnco_c___la-nco_fl.o >/dev/null 2>&1 |
| 26-Jun-2017 11:28:53 | mv -f .deps/libnco_c___la-nco_fl.Tpo .deps/libnco_c___la-nco_fl.Plo |
| 26-Jun-2017 11:28:53 | /bin/bash ../../libtool --tag=CXX --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT libnco_c___la-nco_hgh.lo -MD -MP -MF .deps/libnco_c___la-nco_hgh.Tpo -c -o libnco_c___la-nco_hgh.lo `test -f 'nco_hgh.cc' || echo './'`nco_hgh.cc |
| 26-Jun-2017 11:28:53 | libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT libnco_c___la-nco_hgh.lo -MD -MP -MF .deps/libnco_c___la-nco_hgh.Tpo -c nco_hgh.cc -fPIC -DPIC -o .libs/libnco_c___la-nco_hgh.o |
| 26-Jun-2017 11:28:53 | libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT libnco_c___la-nco_hgh.lo -MD -MP -MF .deps/libnco_c___la-nco_hgh.Tpo -c nco_hgh.cc -o libnco_c___la-nco_hgh.o >/dev/null 2>&1 |
| 26-Jun-2017 11:28:53 | mv -f .deps/libnco_c___la-nco_hgh.Tpo .deps/libnco_c___la-nco_hgh.Plo |
| 26-Jun-2017 11:28:53 | /bin/bash ../../libtool --tag=CXX --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT libnco_c___la-nco_utl.lo -MD -MP -MF .deps/libnco_c___la-nco_utl.Tpo -c -o libnco_c___la-nco_utl.lo `test -f 'nco_utl.cc' || echo './'`nco_utl.cc |
| 26-Jun-2017 11:28:53 | libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT libnco_c___la-nco_utl.lo -MD -MP -MF .deps/libnco_c___la-nco_utl.Tpo -c nco_utl.cc -fPIC -DPIC -o .libs/libnco_c___la-nco_utl.o |
| 26-Jun-2017 11:28:54 | libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT libnco_c___la-nco_utl.lo -MD -MP -MF .deps/libnco_c___la-nco_utl.Tpo -c nco_utl.cc -o libnco_c___la-nco_utl.o >/dev/null 2>&1 |
| 26-Jun-2017 11:28:54 | mv -f .deps/libnco_c___la-nco_utl.Tpo .deps/libnco_c___la-nco_utl.Plo |
| 26-Jun-2017 11:28:54 | /bin/bash ../../libtool --tag=CXX --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT libnco_c___la-nco_var.lo -MD -MP -MF .deps/libnco_c___la-nco_var.Tpo -c -o libnco_c___la-nco_var.lo `test -f 'nco_var.cc' || echo './'`nco_var.cc |
| 26-Jun-2017 11:28:54 | libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT libnco_c___la-nco_var.lo -MD -MP -MF .deps/libnco_c___la-nco_var.Tpo -c nco_var.cc -fPIC -DPIC -o .libs/libnco_c___la-nco_var.o |
| 26-Jun-2017 11:28:56 | libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT libnco_c___la-nco_var.lo -MD -MP -MF .deps/libnco_c___la-nco_var.Tpo -c nco_var.cc -o libnco_c___la-nco_var.o >/dev/null 2>&1 |
| 26-Jun-2017 11:28:58 | mv -f .deps/libnco_c___la-nco_var.Tpo .deps/libnco_c___la-nco_var.Plo |
| 26-Jun-2017 11:28:58 | /bin/bash ../../libtool --tag=CXX --tag=CXX --mode=link g++ -g -O2 -release 4.6.1-beta01 -L/srv/sw/netcdf-4.4.1/lib -lnetcdf -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu -o libnco_c++.la -rpath /srv/sw/nco-4.6.1/lib libnco_c___la-nco_att.lo libnco_c___la-nco_dmn.lo libnco_c___la-nco_fl.lo libnco_c___la-nco_hgh.lo libnco_c___la-nco_utl.lo libnco_c___la-nco_var.lo -ludunits2 -lexpat -lm -lnetcdf -lnetcdf -ludunits2 |
| 26-Jun-2017 11:28:58 | libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.9/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.9/crtbeginS.o .libs/libnco_c___la-nco_att.o .libs/libnco_c___la-nco_dmn.o .libs/libnco_c___la-nco_fl.o .libs/libnco_c___la-nco_hgh.o .libs/libnco_c___la-nco_utl.o .libs/libnco_c___la-nco_var.o -Wl,-rpath -Wl,/srv/sw/netcdf-4.4.1/lib -Wl,-rpath -Wl,/srv/sw/netcdf-4.4.1/lib -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu /usr/lib/x86_64-linux-gnu/libexpat.so /srv/sw/netcdf-4.4.1/lib/libnetcdf.so -ludunits2 -L/usr/lib/gcc/x86_64-linux-gnu/4.9 -L/usr/lib/gcc/x86_64-linux-gnu/4.9/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.9/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.9/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.9/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.9/../../../x86_64-linux-gnu/crtn.o -O2 -Wl,-soname -Wl,libnco_c++-4.6.1-beta01.so -o .libs/libnco_c++-4.6.1-beta01.so |
| 26-Jun-2017 11:28:58 | libtool: link: (cd ".libs" && rm -f "libnco_c++.so" && ln -s "libnco_c++-4.6.1-beta01.so" "libnco_c++.so") |
| 26-Jun-2017 11:28:58 | libtool: link: ar cru .libs/libnco_c++.a libnco_c___la-nco_att.o libnco_c___la-nco_dmn.o libnco_c___la-nco_fl.o libnco_c___la-nco_hgh.o libnco_c___la-nco_utl.o libnco_c___la-nco_var.o |
| 26-Jun-2017 11:28:58 | libtool: link: ranlib .libs/libnco_c++.a |
| 26-Jun-2017 11:28:58 | libtool: link: ( cd ".libs" && rm -f "libnco_c++.la" && ln -s "../libnco_c++.la" "libnco_c++.la" ) |
| 26-Jun-2017 11:28:58 | make[3]: Leaving directory '/srv/downloads/nco-4.6.1/src/nco_c++' |
| 26-Jun-2017 11:28:58 | Making all in nco++ |
| 26-Jun-2017 11:28:58 | make[3]: Entering directory '/srv/downloads/nco-4.6.1/src/nco++' |
| 26-Jun-2017 11:28:58 | g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT Invoke.o -MD -MP -MF .deps/Invoke.Tpo -c -o Invoke.o Invoke.cc |
| 26-Jun-2017 11:29:00 | mv -f .deps/Invoke.Tpo .deps/Invoke.Po |
| 26-Jun-2017 11:29:00 | g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT ncap2.o -MD -MP -MF .deps/ncap2.Tpo -c -o ncap2.o ncap2.cc |
| 26-Jun-2017 11:29:02 | mv -f .deps/ncap2.Tpo .deps/ncap2.Po |
| 26-Jun-2017 11:29:02 | g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT ncap2_utl.o -MD -MP -MF .deps/ncap2_utl.Tpo -c -o ncap2_utl.o ncap2_utl.cc |
| 26-Jun-2017 11:29:11 | mv -f .deps/ncap2_utl.Tpo .deps/ncap2_utl.Po |
| 26-Jun-2017 11:29:11 | g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT sdo_utl.o -MD -MP -MF .deps/sdo_utl.Tpo -c -o sdo_utl.o sdo_utl.cc |
| 26-Jun-2017 11:29:12 | mv -f .deps/sdo_utl.Tpo .deps/sdo_utl.Po |
| 26-Jun-2017 11:29:12 | g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT sym_cls.o -MD -MP -MF .deps/sym_cls.Tpo -c -o sym_cls.o sym_cls.cc |
| 26-Jun-2017 11:29:12 | mv -f .deps/sym_cls.Tpo .deps/sym_cls.Po |
| 26-Jun-2017 11:29:12 | g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT fmc_cls.o -MD -MP -MF .deps/fmc_cls.Tpo -c -o fmc_cls.o fmc_cls.cc |
| 26-Jun-2017 11:29:12 | mv -f .deps/fmc_cls.Tpo .deps/fmc_cls.Po |
| 26-Jun-2017 11:29:12 | g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT fmc_all_cls.o -MD -MP -MF .deps/fmc_all_cls.Tpo -c -o fmc_all_cls.o fmc_all_cls.cc |
| 26-Jun-2017 11:29:21 | mv -f .deps/fmc_all_cls.Tpo .deps/fmc_all_cls.Po |
| 26-Jun-2017 11:29:21 | g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT fmc_gsl_cls.o -MD -MP -MF .deps/fmc_gsl_cls.Tpo -c -o fmc_gsl_cls.o fmc_gsl_cls.cc |
| 26-Jun-2017 11:29:21 | mv -f .deps/fmc_gsl_cls.Tpo .deps/fmc_gsl_cls.Po |
| 26-Jun-2017 11:29:21 | g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT prs_cls.o -MD -MP -MF .deps/prs_cls.Tpo -c -o prs_cls.o prs_cls.cc |
| 26-Jun-2017 11:29:22 | mv -f .deps/prs_cls.Tpo .deps/prs_cls.Po |
| 26-Jun-2017 11:29:22 | g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT NcapVar.o -MD -MP -MF .deps/NcapVar.Tpo -c -o NcapVar.o NcapVar.cc |
| 26-Jun-2017 11:29:23 | mv -f .deps/NcapVar.Tpo .deps/NcapVar.Po |
| 26-Jun-2017 11:29:23 | g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT NcapVarVector.o -MD -MP -MF .deps/NcapVarVector.Tpo -c -o NcapVarVector.o NcapVarVector.cc |
| 26-Jun-2017 11:29:23 | mv -f .deps/NcapVarVector.Tpo .deps/NcapVarVector.Po |
| 26-Jun-2017 11:29:23 | g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT ncoLexer.o -MD -MP -MF .deps/ncoLexer.Tpo -c -o ncoLexer.o ncoLexer.cpp |
| 26-Jun-2017 11:29:27 | mv -f .deps/ncoLexer.Tpo .deps/ncoLexer.Po |
| 26-Jun-2017 11:29:27 | g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT ncoParser.o -MD -MP -MF .deps/ncoParser.Tpo -c -o ncoParser.o ncoParser.cpp |
| 26-Jun-2017 11:29:30 | mv -f .deps/ncoParser.Tpo .deps/ncoParser.Po |
| 26-Jun-2017 11:29:30 | g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT ncoTree.o -MD -MP -MF .deps/ncoTree.Tpo -c -o ncoTree.o ncoTree.cpp |
| 26-Jun-2017 11:29:43 | mv -f .deps/ncoTree.Tpo .deps/ncoTree.Po |
| 26-Jun-2017 11:29:43 | gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_gsl.o -MD -MP -MF .deps/nco_gsl.Tpo -c -o nco_gsl.o nco_gsl.c |
| 26-Jun-2017 11:29:43 | mv -f .deps/nco_gsl.Tpo .deps/nco_gsl.Po |
| 26-Jun-2017 11:29:43 | /bin/bash ../../libtool --tag=CXX --tag=CXX --mode=link g++ -g -O2 -L../nco -lnco -lantlr -L/srv/sw/netcdf-4.4.1/lib -lnetcdf -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu -o ncap2 Invoke.o ncap2.o ncap2_utl.o sdo_utl.o sym_cls.o fmc_cls.o fmc_all_cls.o fmc_gsl_cls.o prs_cls.o NcapVar.o NcapVarVector.o ncoLexer.o ncoParser.o ncoTree.o nco_gsl.o -ludunits2 -lexpat -lm -lnetcdf -lnetcdf -ludunits2 |
| 26-Jun-2017 11:29:43 | libtool: link: g++ -g -O2 -o .libs/ncap2 Invoke.o ncap2.o ncap2_utl.o sdo_utl.o sym_cls.o fmc_cls.o fmc_all_cls.o fmc_gsl_cls.o prs_cls.o NcapVar.o NcapVarVector.o ncoLexer.o ncoParser.o ncoTree.o nco_gsl.o -L../nco /srv/downloads/nco-4.6.1/src/nco/.libs/libnco.so -lantlr -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu /usr/lib/x86_64-linux-gnu/libexpat.so -lm /srv/sw/netcdf-4.4.1/lib/libnetcdf.so -ludunits2 -fopenmp -Wl,-rpath -Wl,/srv/sw/nco-4.6.1/lib -Wl,-rpath -Wl,/srv/sw/netcdf-4.4.1/lib |
| 26-Jun-2017 11:29:43 | make[3]: Leaving directory '/srv/downloads/nco-4.6.1/src/nco++' |
| 26-Jun-2017 11:29:43 | make[3]: Entering directory '/srv/downloads/nco-4.6.1/src' |
| 26-Jun-2017 11:29:43 | make[3]: Nothing to be done for 'all-am'. |
| 26-Jun-2017 11:29:43 | make[3]: Leaving directory '/srv/downloads/nco-4.6.1/src' |
| 26-Jun-2017 11:29:43 | make[2]: Leaving directory '/srv/downloads/nco-4.6.1/src' |
| 26-Jun-2017 11:29:43 | Making all in man |
| 26-Jun-2017 11:29:43 | make[2]: Entering directory '/srv/downloads/nco-4.6.1/man' |
| 26-Jun-2017 11:29:43 | make[2]: Nothing to be done for 'all'. |
| 26-Jun-2017 11:29:43 | make[2]: Leaving directory '/srv/downloads/nco-4.6.1/man' |
| 26-Jun-2017 11:29:43 | make[2]: Entering directory '/srv/downloads/nco-4.6.1' |
| 26-Jun-2017 11:29:43 | make[2]: Leaving directory '/srv/downloads/nco-4.6.1' |
| 26-Jun-2017 11:29:43 | make[1]: Leaving directory '/srv/downloads/nco-4.6.1' |
| 26-Jun-2017 11:29:43 | Making install in data |
| 26-Jun-2017 11:29:43 | make[1]: Entering directory '/srv/downloads/nco-4.6.1/data' |
| 26-Jun-2017 11:29:43 | make[2]: Entering directory '/srv/downloads/nco-4.6.1/data' |
| 26-Jun-2017 11:29:43 | /bin/mkdir -p '/srv/sw/nco-4.6.1/bin' |
| 26-Jun-2017 11:29:43 | /usr/bin/install -c ncclimo ncremap '/srv/sw/nco-4.6.1/bin' |
| 26-Jun-2017 11:29:43 | make[2]: Nothing to be done for 'install-data-am'. |
| 26-Jun-2017 11:29:43 | make[2]: Leaving directory '/srv/downloads/nco-4.6.1/data' |
| 26-Jun-2017 11:29:43 | make[1]: Leaving directory '/srv/downloads/nco-4.6.1/data' |
| 26-Jun-2017 11:29:43 | Making install in src |
| 26-Jun-2017 11:29:43 | make[1]: Entering directory '/srv/downloads/nco-4.6.1/src' |
| 26-Jun-2017 11:29:43 | Making install in nco |
| 26-Jun-2017 11:29:43 | make[2]: Entering directory '/srv/downloads/nco-4.6.1/src/nco' |
| 26-Jun-2017 11:29:43 | make[3]: Entering directory '/srv/downloads/nco-4.6.1/src/nco' |
| 26-Jun-2017 11:29:43 | /bin/mkdir -p '/srv/sw/nco-4.6.1/lib' |
| 26-Jun-2017 11:29:43 | /bin/bash ../../libtool --tag=CXX --mode=install /usr/bin/install -c libnco.la '/srv/sw/nco-4.6.1/lib' |
| 26-Jun-2017 11:29:43 | libtool: install: /usr/bin/install -c .libs/libnco-4.6.1-beta01.so /srv/sw/nco-4.6.1/lib/libnco-4.6.1-beta01.so |
| 26-Jun-2017 11:29:43 | libtool: install: (cd /srv/sw/nco-4.6.1/lib && { ln -s -f libnco-4.6.1-beta01.so libnco.so || { rm -f libnco.so && ln -s libnco-4.6.1-beta01.so libnco.so; }; }) |
| 26-Jun-2017 11:29:43 | libtool: install: /usr/bin/install -c .libs/libnco.lai /srv/sw/nco-4.6.1/lib/libnco.la |
| 26-Jun-2017 11:29:43 | libtool: install: /usr/bin/install -c .libs/libnco.a /srv/sw/nco-4.6.1/lib/libnco.a |
| 26-Jun-2017 11:29:43 | libtool: install: chmod 644 /srv/sw/nco-4.6.1/lib/libnco.a |
| 26-Jun-2017 11:29:43 | libtool: install: ranlib /srv/sw/nco-4.6.1/lib/libnco.a |
| 26-Jun-2017 11:29:43 | libtool: finish: PATH="/srv/sw/gdal/bin:/srv/sw/proj4/bin:/srv/sw/geos/bin:/srv/sw/netcdf-4.4.1/bin:/srv/sw/hdf5-1.8.17/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/sbin" ldconfig -n /srv/sw/nco-4.6.1/lib |
| 26-Jun-2017 11:29:43 | ---------------------------------------------------------------------- |
| 26-Jun-2017 11:29:43 | Libraries have been installed in: |
| 26-Jun-2017 11:29:43 | /srv/sw/nco-4.6.1/lib |
| 26-Jun-2017 11:29:43 | |
| 26-Jun-2017 11:29:43 | If you ever happen to want to link against installed libraries |
| 26-Jun-2017 11:29:43 | in a given directory, LIBDIR, you must either use libtool, and |
| 26-Jun-2017 11:29:43 | specify the full pathname of the library, or use the `-LLIBDIR' |
| 26-Jun-2017 11:29:43 | flag during linking and do at least one of the following: |
| 26-Jun-2017 11:29:43 | - add LIBDIR to the `LD_LIBRARY_PATH' environment variable |
| 26-Jun-2017 11:29:43 | during execution |
| 26-Jun-2017 11:29:43 | - add LIBDIR to the `LD_RUN_PATH' environment variable |
| 26-Jun-2017 11:29:43 | during linking |
| 26-Jun-2017 11:29:43 | - use the `-Wl,-rpath -Wl,LIBDIR' linker flag |
| 26-Jun-2017 11:29:43 | - have your system administrator add LIBDIR to `/etc/ld.so.conf' |
| 26-Jun-2017 11:29:43 | |
| 26-Jun-2017 11:29:43 | See any operating system documentation about shared libraries for |
| 26-Jun-2017 11:29:43 | more information, such as the ld(1) and ld.so(8) manual pages. |
| 26-Jun-2017 11:29:43 | ---------------------------------------------------------------------- |
| 26-Jun-2017 11:29:43 | /bin/mkdir -p '/srv/sw/nco-4.6.1/bin' |
| 26-Jun-2017 11:29:43 | /bin/bash ../../libtool --tag=CXX --mode=install /usr/bin/install -c ncatted ncbo ncecat ncflint ncks ncpdq ncra ncrename '/srv/sw/nco-4.6.1/bin' |
| 26-Jun-2017 11:29:43 | libtool: install: /usr/bin/install -c .libs/ncatted /srv/sw/nco-4.6.1/bin/ncatted |
| 26-Jun-2017 11:29:43 | libtool: install: /usr/bin/install -c .libs/ncbo /srv/sw/nco-4.6.1/bin/ncbo |
| 26-Jun-2017 11:29:43 | libtool: install: /usr/bin/install -c .libs/ncecat /srv/sw/nco-4.6.1/bin/ncecat |
| 26-Jun-2017 11:29:43 | libtool: install: /usr/bin/install -c .libs/ncflint /srv/sw/nco-4.6.1/bin/ncflint |
| 26-Jun-2017 11:29:43 | libtool: install: /usr/bin/install -c .libs/ncks /srv/sw/nco-4.6.1/bin/ncks |
| 26-Jun-2017 11:29:43 | libtool: install: /usr/bin/install -c .libs/ncpdq /srv/sw/nco-4.6.1/bin/ncpdq |
| 26-Jun-2017 11:29:43 | libtool: install: /usr/bin/install -c .libs/ncra /srv/sw/nco-4.6.1/bin/ncra |
| 26-Jun-2017 11:29:43 | libtool: install: /usr/bin/install -c .libs/ncrename /srv/sw/nco-4.6.1/bin/ncrename |
| 26-Jun-2017 11:29:43 | make install-exec-hook |
| 26-Jun-2017 11:29:43 | make[4]: Entering directory '/srv/downloads/nco-4.6.1/src/nco' |
| 26-Jun-2017 11:29:43 | cd /srv/sw/nco-4.6.1/bin && ln -s -f ncbo ncdiff || (rm -f ncdiff && ln -s -f ncbo ncdiff) |
| 26-Jun-2017 11:29:43 | cd /srv/sw/nco-4.6.1/bin && ln -s -f ncra ncea || (rm -f ncea && ln -s -f ncra ncea) |
| 26-Jun-2017 11:29:43 | cd /srv/sw/nco-4.6.1/bin && ln -s -f ncra nces || (rm -f nces && ln -s -f ncra nces) |
| 26-Jun-2017 11:29:43 | cd /srv/sw/nco-4.6.1/bin && ln -s -f ncra ncrcat || (rm -f ncrcat && ln -s -f ncra ncrcat) |
| 26-Jun-2017 11:29:43 | make[4]: Leaving directory '/srv/downloads/nco-4.6.1/src/nco' |
| 26-Jun-2017 11:29:43 | make[3]: Nothing to be done for 'install-data-am'. |
| 26-Jun-2017 11:29:43 | make[3]: Leaving directory '/srv/downloads/nco-4.6.1/src/nco' |
| 26-Jun-2017 11:29:43 | make[2]: Leaving directory '/srv/downloads/nco-4.6.1/src/nco' |
| 26-Jun-2017 11:29:43 | Making install in nco_c++ |
| 26-Jun-2017 11:29:43 | make[2]: Entering directory '/srv/downloads/nco-4.6.1/src/nco_c++' |
| 26-Jun-2017 11:29:44 | make[3]: Entering directory '/srv/downloads/nco-4.6.1/src/nco_c++' |
| 26-Jun-2017 11:29:44 | /bin/mkdir -p '/srv/sw/nco-4.6.1/lib' |
| 26-Jun-2017 11:29:44 | /bin/bash ../../libtool --tag=CXX --mode=install /usr/bin/install -c libnco_c++.la '/srv/sw/nco-4.6.1/lib' |
| 26-Jun-2017 11:29:44 | libtool: install: /usr/bin/install -c .libs/libnco_c++-4.6.1-beta01.so /srv/sw/nco-4.6.1/lib/libnco_c++-4.6.1-beta01.so |
| 26-Jun-2017 11:29:44 | libtool: install: (cd /srv/sw/nco-4.6.1/lib && { ln -s -f libnco_c++-4.6.1-beta01.so libnco_c++.so || { rm -f libnco_c++.so && ln -s libnco_c++-4.6.1-beta01.so libnco_c++.so; }; }) |
| 26-Jun-2017 11:29:44 | libtool: install: /usr/bin/install -c .libs/libnco_c++.lai /srv/sw/nco-4.6.1/lib/libnco_c++.la |
| 26-Jun-2017 11:29:44 | libtool: install: /usr/bin/install -c .libs/libnco_c++.a /srv/sw/nco-4.6.1/lib/libnco_c++.a |
| 26-Jun-2017 11:29:44 | libtool: install: chmod 644 /srv/sw/nco-4.6.1/lib/libnco_c++.a |
| 26-Jun-2017 11:29:44 | libtool: install: ranlib /srv/sw/nco-4.6.1/lib/libnco_c++.a |
| 26-Jun-2017 11:29:44 | libtool: finish: PATH="/srv/sw/gdal/bin:/srv/sw/proj4/bin:/srv/sw/geos/bin:/srv/sw/netcdf-4.4.1/bin:/srv/sw/hdf5-1.8.17/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/sbin" ldconfig -n /srv/sw/nco-4.6.1/lib |
| 26-Jun-2017 11:29:44 | ---------------------------------------------------------------------- |
| 26-Jun-2017 11:29:44 | Libraries have been installed in: |
| 26-Jun-2017 11:29:44 | /srv/sw/nco-4.6.1/lib |
| 26-Jun-2017 11:29:44 | |
| 26-Jun-2017 11:29:44 | If you ever happen to want to link against installed libraries |
| 26-Jun-2017 11:29:44 | in a given directory, LIBDIR, you must either use libtool, and |
| 26-Jun-2017 11:29:44 | specify the full pathname of the library, or use the `-LLIBDIR' |
| 26-Jun-2017 11:29:44 | flag during linking and do at least one of the following: |
| 26-Jun-2017 11:29:44 | - add LIBDIR to the `LD_LIBRARY_PATH' environment variable |
| 26-Jun-2017 11:29:44 | during execution |
| 26-Jun-2017 11:29:44 | - add LIBDIR to the `LD_RUN_PATH' environment variable |
| 26-Jun-2017 11:29:44 | during linking |
| 26-Jun-2017 11:29:44 | - use the `-Wl,-rpath -Wl,LIBDIR' linker flag |
| 26-Jun-2017 11:29:44 | - have your system administrator add LIBDIR to `/etc/ld.so.conf' |
| 26-Jun-2017 11:29:44 | |
| 26-Jun-2017 11:29:44 | See any operating system documentation about shared libraries for |
| 26-Jun-2017 11:29:44 | more information, such as the ld(1) and ld.so(8) manual pages. |
| 26-Jun-2017 11:29:44 | ---------------------------------------------------------------------- |
| 26-Jun-2017 11:29:44 | /bin/mkdir -p '/srv/sw/nco-4.6.1/include' |
| 26-Jun-2017 11:29:44 | /usr/bin/install -c -m 644 libnco_c++.hh nco_dmn.hh nco_hgh.hh nco_var.hh nco_att.hh nco_fl.hh nco_utl.hh '/srv/sw/nco-4.6.1/include' |
| 26-Jun-2017 11:29:44 | make[3]: Leaving directory '/srv/downloads/nco-4.6.1/src/nco_c++' |
| 26-Jun-2017 11:29:44 | make[2]: Leaving directory '/srv/downloads/nco-4.6.1/src/nco_c++' |
| 26-Jun-2017 11:29:44 | Making install in nco++ |
| 26-Jun-2017 11:29:44 | make[2]: Entering directory '/srv/downloads/nco-4.6.1/src/nco++' |
| 26-Jun-2017 11:29:44 | make[3]: Entering directory '/srv/downloads/nco-4.6.1/src/nco++' |
| 26-Jun-2017 11:29:44 | /bin/mkdir -p '/srv/sw/nco-4.6.1/bin' |
| 26-Jun-2017 11:29:44 | /bin/bash ../../libtool --tag=CXX --mode=install /usr/bin/install -c ncap2 '/srv/sw/nco-4.6.1/bin' |
| 26-Jun-2017 11:29:44 | libtool: install: /usr/bin/install -c .libs/ncap2 /srv/sw/nco-4.6.1/bin/ncap2 |
| 26-Jun-2017 11:29:44 | make[3]: Nothing to be done for 'install-data-am'. |
| 26-Jun-2017 11:29:44 | make[3]: Leaving directory '/srv/downloads/nco-4.6.1/src/nco++' |
| 26-Jun-2017 11:29:44 | make[2]: Leaving directory '/srv/downloads/nco-4.6.1/src/nco++' |
| 26-Jun-2017 11:29:44 | make[2]: Entering directory '/srv/downloads/nco-4.6.1/src' |
| 26-Jun-2017 11:29:44 | make[3]: Entering directory '/srv/downloads/nco-4.6.1/src' |
| 26-Jun-2017 11:29:44 | make[3]: Nothing to be done for 'install-exec-am'. |
| 26-Jun-2017 11:29:44 | make[3]: Nothing to be done for 'install-data-am'. |
| 26-Jun-2017 11:29:44 | make[3]: Leaving directory '/srv/downloads/nco-4.6.1/src' |
| 26-Jun-2017 11:29:44 | make[2]: Leaving directory '/srv/downloads/nco-4.6.1/src' |
| 26-Jun-2017 11:29:44 | make[1]: Leaving directory '/srv/downloads/nco-4.6.1/src' |
| 26-Jun-2017 11:29:44 | Making install in man |
| 26-Jun-2017 11:29:44 | make[1]: Entering directory '/srv/downloads/nco-4.6.1/man' |
| 26-Jun-2017 11:29:44 | make[2]: Entering directory '/srv/downloads/nco-4.6.1/man' |
| 26-Jun-2017 11:29:44 | make[2]: Nothing to be done for 'install-exec-am'. |
| 26-Jun-2017 11:29:44 | /bin/mkdir -p '/srv/sw/nco-4.6.1/share/man/man1' |
| 26-Jun-2017 11:29:44 | /usr/bin/install -c -m 644 ncap.1 ncap2.1 ncatted.1 ncbo.1 ncclimo.1 nces.1 ncecat.1 ncflint.1 ncks.1 nco.1 ncra.1 ncremap.1 ncrename.1 ncpdq.1 ncrcat.1 ncwa.1 '/srv/sw/nco-4.6.1/share/man/man1' |
| 26-Jun-2017 11:29:44 | make[2]: Leaving directory '/srv/downloads/nco-4.6.1/man' |
| 26-Jun-2017 11:29:44 | make[1]: Leaving directory '/srv/downloads/nco-4.6.1/man' |
| 26-Jun-2017 11:29:44 | make[1]: Entering directory '/srv/downloads/nco-4.6.1' |
| 26-Jun-2017 11:29:44 | make[2]: Entering directory '/srv/downloads/nco-4.6.1' |
| 26-Jun-2017 11:29:44 | make[2]: Nothing to be done for 'install-exec-am'. |
| 26-Jun-2017 11:29:44 | make[2]: Nothing to be done for 'install-data-am'. |
| 26-Jun-2017 11:29:44 | make[2]: Leaving directory '/srv/downloads/nco-4.6.1' |
| 26-Jun-2017 11:29:44 | make[1]: Leaving directory '/srv/downloads/nco-4.6.1' |
| 26-Jun-2017 11:29:45 | ---> f5b10dcda396 |
| 26-Jun-2017 11:29:45 | Removing intermediate container 0de69ee60cc9 |
| 26-Jun-2017 11:29:45 | Step 18/31 : ENV PATH "/srv/sw/nco-4.6.1/bin:${PATH}" LD_LIBRARY_PATH "/srv/sw/nco-4.6.1/lib:${LD_LIBRARY_PATH}" |
| 26-Jun-2017 11:29:45 | ---> Running in 9be322ec5c4e |
| 26-Jun-2017 11:29:45 | ---> e5fcdb5bdfee |
| 26-Jun-2017 11:29:45 | Removing intermediate container 9be322ec5c4e |
| 26-Jun-2017 11:29:45 | Step 19/31 : ENV USERHOME "/home/ubuntu" |
| 26-Jun-2017 11:29:45 | ---> Running in 27343e7b948d |
| 26-Jun-2017 11:29:45 | ---> 69ff223dd77e |
| 26-Jun-2017 11:29:45 | Removing intermediate container 27343e7b948d |
| 26-Jun-2017 11:29:45 | Step 20/31 : WORKDIR "${USERHOME}" |
| 26-Jun-2017 11:29:46 | ---> 0c8f5ac12588 |
| 26-Jun-2017 11:29:46 | Removing intermediate container b13a63998121 |
| 26-Jun-2017 11:29:46 | Step 21/31 : RUN cd ${USERHOME} && pip install pika urllib3 requests && CC=gcc CXX=g++ USE_SETUPCFG=0 HDF5_INCDIR=/srv/sw/hdf5-1.8.17/include HDF5_LIBDIR=/srv/sw/hdf5-1.8.17/lib NETCDF4_INCDIR=/srv/sw/netcdf-4.4.1/include NETCDF4_LIBDIR=/srv/sw/netcdf-4.4.1/lib pip install netCDF4 && pip install git+https://opensource.ncsa.illinois.edu/stash/scm/cats/pyclowder.git |
| 26-Jun-2017 11:29:46 | ---> Running in 17c24d74459b |
| 26-Jun-2017 11:29:47 | Downloading/unpacking pika |
| 26-Jun-2017 11:29:47 | Requirement already satisfied (use --upgrade to upgrade): urllib3 in /usr/lib/python2.7/dist-packages |
| 26-Jun-2017 11:29:47 | Requirement already satisfied (use --upgrade to upgrade): requests in /usr/lib/python2.7/dist-packages |
| 26-Jun-2017 11:29:47 | Installing collected packages: pika |
| 26-Jun-2017 11:29:47 | Successfully installed pika |
| 26-Jun-2017 11:29:47 | Cleaning up... |
| 26-Jun-2017 11:29:48 | Downloading/unpacking netCDF4 |
| 26-Jun-2017 11:29:49 | Running setup.py (path:/tmp/pip-build-QOx9PN/netCDF4/setup.py) egg_info for package netCDF4 |
| 26-Jun-2017 11:29:49 | Package hdf5 was not found in the pkg-config search path. |
| 26-Jun-2017 11:29:49 | Perhaps you should add the directory containing `hdf5.pc' |
| 26-Jun-2017 11:29:49 | to the PKG_CONFIG_PATH environment variable |
| 26-Jun-2017 11:29:49 | No package 'hdf5' found |
| 26-Jun-2017 11:29:50 | Unable to find pgen, not compiling formal grammar. |
| 26-Jun-2017 11:29:50 | warning: no files found matching '*.pyx' under directory 'Cython/Debugger/Tests' |
| 26-Jun-2017 11:29:50 | warning: no files found matching '*.pxd' under directory 'Cython/Debugger/Tests' |
| 26-Jun-2017 11:29:50 | warning: no files found matching '*.h' under directory 'Cython/Debugger/Tests' |
| 26-Jun-2017 11:29:50 | warning: no files found matching '*.pxd' under directory 'Cython/Utility' |
| 26-Jun-2017 11:31:42 | using netcdf library version 4.4.1 |
| 26-Jun-2017 11:31:42 | using Cython to compile netCDF4.pyx... |
| 26-Jun-2017 11:31:42 | netcdf lib has group rename capability |
| 26-Jun-2017 11:31:42 | netcdf lib has nc_inq_path function |
| 26-Jun-2017 11:31:42 | netcdf lib has nc_inq_format_extended function |
| 26-Jun-2017 11:31:42 | netcdf lib has nc_open_mem function |
| 26-Jun-2017 11:31:42 | netcdf lib has cdf-5 format capability |
| 26-Jun-2017 11:31:42 | |
| 26-Jun-2017 11:31:42 | Installed /tmp/pip-build-QOx9PN/netCDF4/Cython-0.25.2-py2.7-linux-x86_64.egg |
| 26-Jun-2017 11:31:42 | Traceback (most recent call last): |
| 26-Jun-2017 11:31:42 | File "<string>", line 17, in <module> |
| 26-Jun-2017 11:31:42 | File "/tmp/pip-build-QOx9PN/netCDF4/setup.py", line 465, in <module> |
| 26-Jun-2017 11:31:42 | **setuptools_extra_kwargs) |
| 26-Jun-2017 11:31:42 | File "/usr/lib/python2.7/distutils/core.py", line 111, in setup |
| 26-Jun-2017 11:31:42 | _setup_distribution = dist = klass(attrs) |
| 26-Jun-2017 11:31:42 | File "/usr/lib/python2.7/dist-packages/setuptools/dist.py", line 262, in __init__ |
| 26-Jun-2017 11:31:42 | self.fetch_build_eggs(attrs['setup_requires']) |
| 26-Jun-2017 11:31:42 | File "/usr/lib/python2.7/dist-packages/setuptools/dist.py", line 287, in fetch_build_eggs |
| 26-Jun-2017 11:31:42 | replace_conflicting=True, |
| 26-Jun-2017 11:31:42 | File "/usr/lib/python2.7/dist-packages/pkg_resources.py", line 631, in resolve |
| 26-Jun-2017 11:31:42 | dist = best[req.key] = env.best_match(req, ws, installer) |
| 26-Jun-2017 11:31:42 | File "/usr/lib/python2.7/dist-packages/pkg_resources.py", line 867, in best_match |
| 26-Jun-2017 11:31:42 | dist = working_set.find(req) |
| 26-Jun-2017 11:31:42 | File "/usr/lib/python2.7/dist-packages/pkg_resources.py", line 509, in find |
| 26-Jun-2017 11:31:42 | raise VersionConflict(dist, req) |
| 26-Jun-2017 11:31:42 | pkg_resources.VersionConflict: (setuptools 5.5.1 (/usr/lib/python2.7/dist-packages), Requirement.parse('setuptools>=18.0')) |
| 26-Jun-2017 11:31:42 | Complete output from command python setup.py egg_info: |
| 26-Jun-2017 11:31:42 | Package hdf5 was not found in the pkg-config search path. |
| 26-Jun-2017 11:31:42 | |
| 26-Jun-2017 11:31:42 | Perhaps you should add the directory containing `hdf5.pc' |
| 26-Jun-2017 11:31:42 | |
| 26-Jun-2017 11:31:42 | to the PKG_CONFIG_PATH environment variable |
| 26-Jun-2017 11:31:42 | |
| 26-Jun-2017 11:31:42 | No package 'hdf5' found |
| 26-Jun-2017 11:31:42 | |
| 26-Jun-2017 11:31:42 | Unable to find pgen, not compiling formal grammar. |
| 26-Jun-2017 11:31:42 | |
| 26-Jun-2017 11:31:42 | warning: no files found matching '*.pyx' under directory 'Cython/Debugger/Tests' |
| 26-Jun-2017 11:31:42 | |
| 26-Jun-2017 11:31:42 | warning: no files found matching '*.pxd' under directory 'Cython/Debugger/Tests' |
| 26-Jun-2017 11:31:42 | |
| 26-Jun-2017 11:31:42 | warning: no files found matching '*.h' under directory 'Cython/Debugger/Tests' |
| 26-Jun-2017 11:31:42 | |
| 26-Jun-2017 11:31:42 | warning: no files found matching '*.pxd' under directory 'Cython/Utility' |
| 26-Jun-2017 11:31:42 | |
| 26-Jun-2017 11:31:42 | using netcdf library version 4.4.1 |
| 26-Jun-2017 11:31:42 | |
| 26-Jun-2017 11:31:42 | using Cython to compile netCDF4.pyx... |
| 26-Jun-2017 11:31:42 | |
| 26-Jun-2017 11:31:42 | netcdf lib has group rename capability |
| 26-Jun-2017 11:31:42 | |
| 26-Jun-2017 11:31:42 | netcdf lib has nc_inq_path function |
| 26-Jun-2017 11:31:42 | |
| 26-Jun-2017 11:31:42 | netcdf lib has nc_inq_format_extended function |
| 26-Jun-2017 11:31:42 | |
| 26-Jun-2017 11:31:42 | netcdf lib has nc_open_mem function |
| 26-Jun-2017 11:31:42 | |
| 26-Jun-2017 11:31:42 | netcdf lib has cdf-5 format capability |
| 26-Jun-2017 11:31:42 | |
| 26-Jun-2017 11:31:42 | |
| 26-Jun-2017 11:31:42 | |
| 26-Jun-2017 11:31:42 | Installed /tmp/pip-build-QOx9PN/netCDF4/Cython-0.25.2-py2.7-linux-x86_64.egg |
| 26-Jun-2017 11:31:42 | |
| 26-Jun-2017 11:31:42 | Traceback (most recent call last): |
| 26-Jun-2017 11:31:42 | |
| 26-Jun-2017 11:31:42 | File "<string>", line 17, in <module> |
| 26-Jun-2017 11:31:42 | |
| 26-Jun-2017 11:31:42 | File "/tmp/pip-build-QOx9PN/netCDF4/setup.py", line 465, in <module> |
| 26-Jun-2017 11:31:42 | |
| 26-Jun-2017 11:31:42 | **setuptools_extra_kwargs) |
| 26-Jun-2017 11:31:42 | |
| 26-Jun-2017 11:31:42 | File "/usr/lib/python2.7/distutils/core.py", line 111, in setup |
| 26-Jun-2017 11:31:42 | |
| 26-Jun-2017 11:31:42 | _setup_distribution = dist = klass(attrs) |
| 26-Jun-2017 11:31:42 | |
| 26-Jun-2017 11:31:42 | File "/usr/lib/python2.7/dist-packages/setuptools/dist.py", line 262, in __init__ |
| 26-Jun-2017 11:31:42 | |
| 26-Jun-2017 11:31:42 | self.fetch_build_eggs(attrs['setup_requires']) |
| 26-Jun-2017 11:31:42 | |
| 26-Jun-2017 11:31:42 | File "/usr/lib/python2.7/dist-packages/setuptools/dist.py", line 287, in fetch_build_eggs |
| 26-Jun-2017 11:31:42 | |
| 26-Jun-2017 11:31:42 | replace_conflicting=True, |
| 26-Jun-2017 11:31:42 | |
| 26-Jun-2017 11:31:42 | File "/usr/lib/python2.7/dist-packages/pkg_resources.py", line 631, in resolve |
| 26-Jun-2017 11:31:42 | |
| 26-Jun-2017 11:31:42 | dist = best[req.key] = env.best_match(req, ws, installer) |
| 26-Jun-2017 11:31:42 | |
| 26-Jun-2017 11:31:42 | File "/usr/lib/python2.7/dist-packages/pkg_resources.py", line 867, in best_match |
| 26-Jun-2017 11:31:42 | |
| 26-Jun-2017 11:31:42 | dist = working_set.find(req) |
| 26-Jun-2017 11:31:42 | |
| 26-Jun-2017 11:31:42 | File "/usr/lib/python2.7/dist-packages/pkg_resources.py", line 509, in find |
| 26-Jun-2017 11:31:42 | |
| 26-Jun-2017 11:31:42 | raise VersionConflict(dist, req) |
| 26-Jun-2017 11:31:42 | |
| 26-Jun-2017 11:31:42 | pkg_resources.VersionConflict: (setuptools 5.5.1 (/usr/lib/python2.7/dist-packages), Requirement.parse('setuptools>=18.0')) |
| 26-Jun-2017 11:31:42 | |
| 26-Jun-2017 11:31:42 | ---------------------------------------- |
| 26-Jun-2017 11:31:42 | Cleaning up... |
| 26-Jun-2017 11:31:42 | Command python setup.py egg_info failed with error code 1 in /tmp/pip-build-QOx9PN/netCDF4 |
| 26-Jun-2017 11:31:42 | Storing debug log for failure in /root/.pip/pip.log |
| 26-Jun-2017 11:31:43 | The command '/bin/sh -c cd ${USERHOME} && pip install pika urllib3 requests && CC=gcc CXX=g++ USE_SETUPCFG=0 HDF5_INCDIR=/srv/sw/hdf5-1.8.17/include HDF5_LIBDIR=/srv/sw/hdf5-1.8.17/lib NETCDF4_INCDIR=/srv/sw/netcdf-4.4.1/include NETCDF4_LIBDIR=/srv/sw/netcdf-4.4.1/lib pip install netCDF4 && pip install git+https://opensource.ncsa.illinois.edu/stash/scm/cats/pyclowder.git' returned a non-zero code: 1 |
| 26-Jun-2017 11:31:43 | docker.sh: 55: exit: Illegal number: -1 |
| 26-Jun-2017 11:31:43 | FAILED build of ./Dockerfile |
| 26-Jun-2017 11:31:43 | Failing task since return code of [/bin/sh docker.sh] was 2 while expected 0 |
| 26-Jun-2017 11:31:43 | Finished task 'docker build' with result: Failed |
| 26-Jun-2017 11:31:43 | Running post build plugin 'Docker Container Cleanup' |
| 26-Jun-2017 11:31:43 | Running post build plugin 'NCover Results Collector' |
| 26-Jun-2017 11:31:43 | Running post build plugin 'Clover Results Collector' |
| 26-Jun-2017 11:31:43 | Running post build plugin 'npm Cache Cleanup' |
| 26-Jun-2017 11:31:43 | Running post build plugin 'Artifact Copier' |
| 26-Jun-2017 11:31:43 | Finalising the build... |
| 26-Jun-2017 11:31:43 | Stopping timer. |
| 26-Jun-2017 11:31:43 | Build POL-HYPERSPECTRAL-JOB1-4 completed. |
| 26-Jun-2017 11:31:43 | Running on server: post build plugin 'NCover Results Collector' |
| 26-Jun-2017 11:31:43 | Running on server: post build plugin 'Build Hanging Detection Configuration' |
| 26-Jun-2017 11:31:43 | Running on server: post build plugin 'Clover Delta Calculator' |
| 26-Jun-2017 11:31:43 | Running on server: post build plugin 'Maven Dependencies Postprocessor' |
| 26-Jun-2017 11:31:43 | All post build plugins have finished |
| 26-Jun-2017 11:31:43 | Generating build results summary... |
| 26-Jun-2017 11:31:43 | Saving build results to disk... |
| 26-Jun-2017 11:31:43 | Logging substituted variables... |
| 26-Jun-2017 11:31:43 | Indexing build results... |
| 26-Jun-2017 11:31:43 | Finished building POL-HYPERSPECTRAL-JOB1-4. |