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| 12-Jan-2018 16:34:55 | mv -f .deps/nco_lst_utl.Tpo .deps/nco_lst_utl.Plo |
| 12-Jan-2018 16:34:55 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_md5.lo -MD -MP -MF .deps/nco_md5.Tpo -c -o nco_md5.lo nco_md5.c |
| 12-Jan-2018 16:34:55 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_md5.lo -MD -MP -MF .deps/nco_md5.Tpo -c nco_md5.c -fPIC -DPIC -o .libs/nco_md5.o |
| 12-Jan-2018 16:34:55 | In file included from /usr/include/stdio.h:27:0, |
| 12-Jan-2018 16:34:55 | from nco_md5.h:22, |
| 12-Jan-2018 16:34:55 | from nco_md5.c:25: |
| 12-Jan-2018 16:34:55 | /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 12-Jan-2018 16:34:55 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 12-Jan-2018 16:34:55 | ^~~~~~~ |
| 12-Jan-2018 16:34:55 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_md5.lo -MD -MP -MF .deps/nco_md5.Tpo -c nco_md5.c -o nco_md5.o >/dev/null 2>&1 |
| 12-Jan-2018 16:34:56 | mv -f .deps/nco_md5.Tpo .deps/nco_md5.Plo |
| 12-Jan-2018 16:34:56 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_mmr.lo -MD -MP -MF .deps/nco_mmr.Tpo -c -o nco_mmr.lo nco_mmr.c |
| 12-Jan-2018 16:34:56 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_mmr.lo -MD -MP -MF .deps/nco_mmr.Tpo -c nco_mmr.c -fPIC -DPIC -o .libs/nco_mmr.o |
| 12-Jan-2018 16:34:56 | In file included from /usr/include/errno.h:28:0, |
| 12-Jan-2018 16:34:56 | from nco_mmr.h:21, |
| 12-Jan-2018 16:34:56 | from nco_mmr.c:27: |
| 12-Jan-2018 16:34:56 | /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 12-Jan-2018 16:34:56 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 12-Jan-2018 16:34:56 | ^~~~~~~ |
| 12-Jan-2018 16:34:56 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_mmr.lo -MD -MP -MF .deps/nco_mmr.Tpo -c nco_mmr.c -o nco_mmr.o >/dev/null 2>&1 |
| 12-Jan-2018 16:34:56 | mv -f .deps/nco_mmr.Tpo .deps/nco_mmr.Plo |
| 12-Jan-2018 16:34:56 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_msa.lo -MD -MP -MF .deps/nco_msa.Tpo -c -o nco_msa.lo nco_msa.c |
| 12-Jan-2018 16:34:56 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_msa.lo -MD -MP -MF .deps/nco_msa.Tpo -c nco_msa.c -fPIC -DPIC -o .libs/nco_msa.o |
| 12-Jan-2018 16:34:56 | In file included from /usr/include/stdio.h:27:0, |
| 12-Jan-2018 16:34:56 | from nco_msa.h:21, |
| 12-Jan-2018 16:34:56 | from nco_msa.c:10: |
| 12-Jan-2018 16:34:56 | /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 12-Jan-2018 16:34:56 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 12-Jan-2018 16:34:56 | ^~~~~~~ |
| 12-Jan-2018 16:34:57 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_msa.lo -MD -MP -MF .deps/nco_msa.Tpo -c nco_msa.c -o nco_msa.o >/dev/null 2>&1 |
| 12-Jan-2018 16:34:57 | mv -f .deps/nco_msa.Tpo .deps/nco_msa.Plo |
| 12-Jan-2018 16:34:57 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_mss_val.lo -MD -MP -MF .deps/nco_mss_val.Tpo -c -o nco_mss_val.lo nco_mss_val.c |
| 12-Jan-2018 16:34:57 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_mss_val.lo -MD -MP -MF .deps/nco_mss_val.Tpo -c nco_mss_val.c -fPIC -DPIC -o .libs/nco_mss_val.o |
| 12-Jan-2018 16:34:57 | In file included from /usr/include/stdio.h:27:0, |
| 12-Jan-2018 16:34:57 | from nco_mss_val.h:21, |
| 12-Jan-2018 16:34:57 | from nco_mss_val.c:10: |
| 12-Jan-2018 16:34:57 | /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 12-Jan-2018 16:34:57 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 12-Jan-2018 16:34:57 | ^~~~~~~ |
| 12-Jan-2018 16:34:57 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_mss_val.lo -MD -MP -MF .deps/nco_mss_val.Tpo -c nco_mss_val.c -o nco_mss_val.o >/dev/null 2>&1 |
| 12-Jan-2018 16:34:58 | mv -f .deps/nco_mss_val.Tpo .deps/nco_mss_val.Plo |
| 12-Jan-2018 16:34:58 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_mta.lo -MD -MP -MF .deps/nco_mta.Tpo -c -o nco_mta.lo nco_mta.c |
| 12-Jan-2018 16:34:58 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_mta.lo -MD -MP -MF .deps/nco_mta.Tpo -c nco_mta.c -fPIC -DPIC -o .libs/nco_mta.o |
| 12-Jan-2018 16:34:58 | In file included from /usr/include/stdio.h:27:0, |
| 12-Jan-2018 16:34:58 | from nco_mta.h:21, |
| 12-Jan-2018 16:34:58 | from nco_mta.c:12: |
| 12-Jan-2018 16:34:58 | /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 12-Jan-2018 16:34:58 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 12-Jan-2018 16:34:58 | ^~~~~~~ |
| 12-Jan-2018 16:34:58 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_mta.lo -MD -MP -MF .deps/nco_mta.Tpo -c nco_mta.c -o nco_mta.o >/dev/null 2>&1 |
| 12-Jan-2018 16:34:58 | mv -f .deps/nco_mta.Tpo .deps/nco_mta.Plo |
| 12-Jan-2018 16:34:58 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_netcdf.lo -MD -MP -MF .deps/nco_netcdf.Tpo -c -o nco_netcdf.lo nco_netcdf.c |
| 12-Jan-2018 16:34:58 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_netcdf.lo -MD -MP -MF .deps/nco_netcdf.Tpo -c nco_netcdf.c -fPIC -DPIC -o .libs/nco_netcdf.o |
| 12-Jan-2018 16:34:58 | In file included from /usr/include/ctype.h:25:0, |
| 12-Jan-2018 16:34:58 | from nco_netcdf.h:43, |
| 12-Jan-2018 16:34:58 | from nco_netcdf.c:10: |
| 12-Jan-2018 16:34:58 | /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 12-Jan-2018 16:34:58 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 12-Jan-2018 16:34:58 | ^~~~~~~ |
| 12-Jan-2018 16:34:58 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_netcdf.lo -MD -MP -MF .deps/nco_netcdf.Tpo -c nco_netcdf.c -o nco_netcdf.o >/dev/null 2>&1 |
| 12-Jan-2018 16:34:59 | mv -f .deps/nco_netcdf.Tpo .deps/nco_netcdf.Plo |
| 12-Jan-2018 16:34:59 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_omp.lo -MD -MP -MF .deps/nco_omp.Tpo -c -o nco_omp.lo nco_omp.c |
| 12-Jan-2018 16:34:59 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_omp.lo -MD -MP -MF .deps/nco_omp.Tpo -c nco_omp.c -fPIC -DPIC -o .libs/nco_omp.o |
| 12-Jan-2018 16:34:59 | In file included from /usr/include/stdio.h:27:0, |
| 12-Jan-2018 16:34:59 | from nco_omp.h:17, |
| 12-Jan-2018 16:34:59 | from nco_omp.c:10: |
| 12-Jan-2018 16:34:59 | /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 12-Jan-2018 16:34:59 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 12-Jan-2018 16:34:59 | ^~~~~~~ |
| 12-Jan-2018 16:34:59 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_omp.lo -MD -MP -MF .deps/nco_omp.Tpo -c nco_omp.c -o nco_omp.o >/dev/null 2>&1 |
| 12-Jan-2018 16:34:59 | mv -f .deps/nco_omp.Tpo .deps/nco_omp.Plo |
| 12-Jan-2018 16:34:59 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_pck.lo -MD -MP -MF .deps/nco_pck.Tpo -c -o nco_pck.lo nco_pck.c |
| 12-Jan-2018 16:34:59 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_pck.lo -MD -MP -MF .deps/nco_pck.Tpo -c nco_pck.c -fPIC -DPIC -o .libs/nco_pck.o |
| 12-Jan-2018 16:34:59 | In file included from /usr/include/stdio.h:27:0, |
| 12-Jan-2018 16:34:59 | from nco_pck.h:17, |
| 12-Jan-2018 16:34:59 | from nco_pck.c:10: |
| 12-Jan-2018 16:34:59 | /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 12-Jan-2018 16:34:59 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 12-Jan-2018 16:34:59 | ^~~~~~~ |
| 12-Jan-2018 16:35:00 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_pck.lo -MD -MP -MF .deps/nco_pck.Tpo -c nco_pck.c -o nco_pck.o >/dev/null 2>&1 |
| 12-Jan-2018 16:35:00 | mv -f .deps/nco_pck.Tpo .deps/nco_pck.Plo |
| 12-Jan-2018 16:35:00 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_ppc.lo -MD -MP -MF .deps/nco_ppc.Tpo -c -o nco_ppc.lo nco_ppc.c |
| 12-Jan-2018 16:35:00 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_ppc.lo -MD -MP -MF .deps/nco_ppc.Tpo -c nco_ppc.c -fPIC -DPIC -o .libs/nco_ppc.o |
| 12-Jan-2018 16:35:00 | In file included from /usr/include/ctype.h:25:0, |
| 12-Jan-2018 16:35:00 | from nco_ppc.h:17, |
| 12-Jan-2018 16:35:00 | from nco_ppc.c:13: |
| 12-Jan-2018 16:35:00 | /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 12-Jan-2018 16:35:00 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 12-Jan-2018 16:35:00 | ^~~~~~~ |
| 12-Jan-2018 16:35:00 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_ppc.lo -MD -MP -MF .deps/nco_ppc.Tpo -c nco_ppc.c -o nco_ppc.o >/dev/null 2>&1 |
| 12-Jan-2018 16:35:00 | mv -f .deps/nco_ppc.Tpo .deps/nco_ppc.Plo |
| 12-Jan-2018 16:35:00 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_prn.lo -MD -MP -MF .deps/nco_prn.Tpo -c -o nco_prn.lo nco_prn.c |
| 12-Jan-2018 16:35:00 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_prn.lo -MD -MP -MF .deps/nco_prn.Tpo -c nco_prn.c -fPIC -DPIC -o .libs/nco_prn.o |
| 12-Jan-2018 16:35:00 | In file included from /usr/include/math.h:26:0, |
| 12-Jan-2018 16:35:00 | from nco_prn.h:21, |
| 12-Jan-2018 16:35:00 | from nco_prn.c:11: |
| 12-Jan-2018 16:35:00 | /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 12-Jan-2018 16:35:00 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 12-Jan-2018 16:35:00 | ^~~~~~~ |
| 12-Jan-2018 16:35:02 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_prn.lo -MD -MP -MF .deps/nco_prn.Tpo -c nco_prn.c -o nco_prn.o >/dev/null 2>&1 |
| 12-Jan-2018 16:35:03 | mv -f .deps/nco_prn.Tpo .deps/nco_prn.Plo |
| 12-Jan-2018 16:35:03 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_rec_var.lo -MD -MP -MF .deps/nco_rec_var.Tpo -c -o nco_rec_var.lo nco_rec_var.c |
| 12-Jan-2018 16:35:03 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_rec_var.lo -MD -MP -MF .deps/nco_rec_var.Tpo -c nco_rec_var.c -fPIC -DPIC -o .libs/nco_rec_var.o |
| 12-Jan-2018 16:35:03 | In file included from /usr/include/stdio.h:27:0, |
| 12-Jan-2018 16:35:03 | from nco_rec_var.h:17, |
| 12-Jan-2018 16:35:03 | from nco_rec_var.c:10: |
| 12-Jan-2018 16:35:03 | /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 12-Jan-2018 16:35:03 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 12-Jan-2018 16:35:03 | ^~~~~~~ |
| 12-Jan-2018 16:35:04 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_rec_var.lo -MD -MP -MF .deps/nco_rec_var.Tpo -c nco_rec_var.c -o nco_rec_var.o >/dev/null 2>&1 |
| 12-Jan-2018 16:35:04 | mv -f .deps/nco_rec_var.Tpo .deps/nco_rec_var.Plo |
| 12-Jan-2018 16:35:04 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_rgr.lo -MD -MP -MF .deps/nco_rgr.Tpo -c -o nco_rgr.lo nco_rgr.c |
| 12-Jan-2018 16:35:04 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_rgr.lo -MD -MP -MF .deps/nco_rgr.Tpo -c nco_rgr.c -fPIC -DPIC -o .libs/nco_rgr.o |
| 12-Jan-2018 16:35:04 | In file included from /usr/include/limits.h:25:0, |
| 12-Jan-2018 16:35:04 | from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h:168, |
| 12-Jan-2018 16:35:04 | from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/syslimits.h:7, |
| 12-Jan-2018 16:35:04 | from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h:34, |
| 12-Jan-2018 16:35:04 | from nco_rgr.h:17, |
| 12-Jan-2018 16:35:04 | from nco_rgr.c:10: |
| 12-Jan-2018 16:35:04 | /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 12-Jan-2018 16:35:04 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 12-Jan-2018 16:35:04 | ^~~~~~~ |
| 12-Jan-2018 16:35:09 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_rgr.lo -MD -MP -MF .deps/nco_rgr.Tpo -c nco_rgr.c -o nco_rgr.o >/dev/null 2>&1 |
| 12-Jan-2018 16:35:14 | mv -f .deps/nco_rgr.Tpo .deps/nco_rgr.Plo |
| 12-Jan-2018 16:35:14 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_rth_flt.lo -MD -MP -MF .deps/nco_rth_flt.Tpo -c -o nco_rth_flt.lo nco_rth_flt.c |
| 12-Jan-2018 16:35:14 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_rth_flt.lo -MD -MP -MF .deps/nco_rth_flt.Tpo -c nco_rth_flt.c -fPIC -DPIC -o .libs/nco_rth_flt.o |
| 12-Jan-2018 16:35:14 | In file included from /usr/include/math.h:26:0, |
| 12-Jan-2018 16:35:14 | from nco_rth_flt.h:21, |
| 12-Jan-2018 16:35:14 | from nco_rth_flt.c:10: |
| 12-Jan-2018 16:35:14 | /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 12-Jan-2018 16:35:14 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 12-Jan-2018 16:35:14 | ^~~~~~~ |
| 12-Jan-2018 16:35:14 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_rth_flt.lo -MD -MP -MF .deps/nco_rth_flt.Tpo -c nco_rth_flt.c -o nco_rth_flt.o >/dev/null 2>&1 |
| 12-Jan-2018 16:35:14 | mv -f .deps/nco_rth_flt.Tpo .deps/nco_rth_flt.Plo |
| 12-Jan-2018 16:35:14 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_rth_utl.lo -MD -MP -MF .deps/nco_rth_utl.Tpo -c -o nco_rth_utl.lo nco_rth_utl.c |
| 12-Jan-2018 16:35:14 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_rth_utl.lo -MD -MP -MF .deps/nco_rth_utl.Tpo -c nco_rth_utl.c -fPIC -DPIC -o .libs/nco_rth_utl.o |
| 12-Jan-2018 16:35:14 | In file included from /usr/include/math.h:26:0, |
| 12-Jan-2018 16:35:14 | from nco_rth_utl.h:17, |
| 12-Jan-2018 16:35:14 | from nco_rth_utl.c:10: |
| 12-Jan-2018 16:35:14 | /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 12-Jan-2018 16:35:14 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 12-Jan-2018 16:35:14 | ^~~~~~~ |
| 12-Jan-2018 16:35:14 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_rth_utl.lo -MD -MP -MF .deps/nco_rth_utl.Tpo -c nco_rth_utl.c -o nco_rth_utl.o >/dev/null 2>&1 |
| 12-Jan-2018 16:35:14 | mv -f .deps/nco_rth_utl.Tpo .deps/nco_rth_utl.Plo |
| 12-Jan-2018 16:35:14 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_scl_utl.lo -MD -MP -MF .deps/nco_scl_utl.Tpo -c -o nco_scl_utl.lo nco_scl_utl.c |
| 12-Jan-2018 16:35:14 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_scl_utl.lo -MD -MP -MF .deps/nco_scl_utl.Tpo -c nco_scl_utl.c -fPIC -DPIC -o .libs/nco_scl_utl.o |
| 12-Jan-2018 16:35:14 | In file included from /usr/include/stdio.h:27:0, |
| 12-Jan-2018 16:35:14 | from nco_scl_utl.h:21, |
| 12-Jan-2018 16:35:14 | from nco_scl_utl.c:10: |
| 12-Jan-2018 16:35:14 | /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 12-Jan-2018 16:35:14 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 12-Jan-2018 16:35:14 | ^~~~~~~ |
| 12-Jan-2018 16:35:14 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_scl_utl.lo -MD -MP -MF .deps/nco_scl_utl.Tpo -c nco_scl_utl.c -o nco_scl_utl.o >/dev/null 2>&1 |
| 12-Jan-2018 16:35:15 | mv -f .deps/nco_scl_utl.Tpo .deps/nco_scl_utl.Plo |
| 12-Jan-2018 16:35:15 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_scm.lo -MD -MP -MF .deps/nco_scm.Tpo -c -o nco_scm.lo nco_scm.c |
| 12-Jan-2018 16:35:15 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_scm.lo -MD -MP -MF .deps/nco_scm.Tpo -c nco_scm.c -fPIC -DPIC -o .libs/nco_scm.o |
| 12-Jan-2018 16:35:15 | In file included from /usr/include/stdio.h:27:0, |
| 12-Jan-2018 16:35:15 | from nco_scm.h:21, |
| 12-Jan-2018 16:35:15 | from nco_scm.c:10: |
| 12-Jan-2018 16:35:15 | /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 12-Jan-2018 16:35:15 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 12-Jan-2018 16:35:15 | ^~~~~~~ |
| 12-Jan-2018 16:35:15 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_scm.lo -MD -MP -MF .deps/nco_scm.Tpo -c nco_scm.c -o nco_scm.o >/dev/null 2>&1 |
| 12-Jan-2018 16:35:15 | mv -f .deps/nco_scm.Tpo .deps/nco_scm.Plo |
| 12-Jan-2018 16:35:15 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_sld.lo -MD -MP -MF .deps/nco_sld.Tpo -c -o nco_sld.lo nco_sld.c |
| 12-Jan-2018 16:35:15 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_sld.lo -MD -MP -MF .deps/nco_sld.Tpo -c nco_sld.c -fPIC -DPIC -o .libs/nco_sld.o |
| 12-Jan-2018 16:35:15 | In file included from /usr/include/stdio.h:27:0, |
| 12-Jan-2018 16:35:15 | from nco_sld.h:17, |
| 12-Jan-2018 16:35:15 | from nco_sld.c:10: |
| 12-Jan-2018 16:35:15 | /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 12-Jan-2018 16:35:15 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 12-Jan-2018 16:35:15 | ^~~~~~~ |
| 12-Jan-2018 16:35:15 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_sld.lo -MD -MP -MF .deps/nco_sld.Tpo -c nco_sld.c -o nco_sld.o >/dev/null 2>&1 |
| 12-Jan-2018 16:35:15 | mv -f .deps/nco_sld.Tpo .deps/nco_sld.Plo |
| 12-Jan-2018 16:35:15 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_sng_utl.lo -MD -MP -MF .deps/nco_sng_utl.Tpo -c -o nco_sng_utl.lo nco_sng_utl.c |
| 12-Jan-2018 16:35:15 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_sng_utl.lo -MD -MP -MF .deps/nco_sng_utl.Tpo -c nco_sng_utl.c -fPIC -DPIC -o .libs/nco_sng_utl.o |
| 12-Jan-2018 16:35:15 | In file included from /usr/include/stdio.h:27:0, |
| 12-Jan-2018 16:35:15 | from nco_sng_utl.h:21, |
| 12-Jan-2018 16:35:15 | from nco_sng_utl.c:10: |
| 12-Jan-2018 16:35:15 | /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 12-Jan-2018 16:35:15 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 12-Jan-2018 16:35:15 | ^~~~~~~ |
| 12-Jan-2018 16:35:16 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_sng_utl.lo -MD -MP -MF .deps/nco_sng_utl.Tpo -c nco_sng_utl.c -o nco_sng_utl.o >/dev/null 2>&1 |
| 12-Jan-2018 16:35:16 | mv -f .deps/nco_sng_utl.Tpo .deps/nco_sng_utl.Plo |
| 12-Jan-2018 16:35:16 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_srm.lo -MD -MP -MF .deps/nco_srm.Tpo -c -o nco_srm.lo nco_srm.c |
| 12-Jan-2018 16:35:16 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_srm.lo -MD -MP -MF .deps/nco_srm.Tpo -c nco_srm.c -fPIC -DPIC -o .libs/nco_srm.o |
| 12-Jan-2018 16:35:16 | In file included from /usr/include/stdio.h:27:0, |
| 12-Jan-2018 16:35:16 | from nco_srm.h:21, |
| 12-Jan-2018 16:35:16 | from nco_srm.c:10: |
| 12-Jan-2018 16:35:16 | /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 12-Jan-2018 16:35:16 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 12-Jan-2018 16:35:16 | ^~~~~~~ |
| 12-Jan-2018 16:35:16 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_srm.lo -MD -MP -MF .deps/nco_srm.Tpo -c nco_srm.c -o nco_srm.o >/dev/null 2>&1 |
| 12-Jan-2018 16:35:16 | mv -f .deps/nco_srm.Tpo .deps/nco_srm.Plo |
| 12-Jan-2018 16:35:16 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_var_avg.lo -MD -MP -MF .deps/nco_var_avg.Tpo -c -o nco_var_avg.lo nco_var_avg.c |
| 12-Jan-2018 16:35:16 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_var_avg.lo -MD -MP -MF .deps/nco_var_avg.Tpo -c nco_var_avg.c -fPIC -DPIC -o .libs/nco_var_avg.o |
| 12-Jan-2018 16:35:16 | In file included from /usr/include/math.h:26:0, |
| 12-Jan-2018 16:35:16 | from nco_var_avg.h:17, |
| 12-Jan-2018 16:35:16 | from nco_var_avg.c:10: |
| 12-Jan-2018 16:35:16 | /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 12-Jan-2018 16:35:16 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 12-Jan-2018 16:35:16 | ^~~~~~~ |
| 12-Jan-2018 16:35:17 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_var_avg.lo -MD -MP -MF .deps/nco_var_avg.Tpo -c nco_var_avg.c -o nco_var_avg.o >/dev/null 2>&1 |
| 12-Jan-2018 16:35:17 | mv -f .deps/nco_var_avg.Tpo .deps/nco_var_avg.Plo |
| 12-Jan-2018 16:35:17 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_var_lst.lo -MD -MP -MF .deps/nco_var_lst.Tpo -c -o nco_var_lst.lo nco_var_lst.c |
| 12-Jan-2018 16:35:17 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_var_lst.lo -MD -MP -MF .deps/nco_var_lst.Tpo -c nco_var_lst.c -fPIC -DPIC -o .libs/nco_var_lst.o |
| 12-Jan-2018 16:35:17 | In file included from /usr/include/assert.h:35:0, |
| 12-Jan-2018 16:35:17 | from nco_var_lst.h:21, |
| 12-Jan-2018 16:35:17 | from nco_var_lst.c:10: |
| 12-Jan-2018 16:35:17 | /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 12-Jan-2018 16:35:17 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 12-Jan-2018 16:35:17 | ^~~~~~~ |
| 12-Jan-2018 16:35:18 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_var_lst.lo -MD -MP -MF .deps/nco_var_lst.Tpo -c nco_var_lst.c -o nco_var_lst.o >/dev/null 2>&1 |
| 12-Jan-2018 16:35:18 | mv -f .deps/nco_var_lst.Tpo .deps/nco_var_lst.Plo |
| 12-Jan-2018 16:35:18 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_var_rth.lo -MD -MP -MF .deps/nco_var_rth.Tpo -c -o nco_var_rth.lo nco_var_rth.c |
| 12-Jan-2018 16:35:18 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_var_rth.lo -MD -MP -MF .deps/nco_var_rth.Tpo -c nco_var_rth.c -fPIC -DPIC -o .libs/nco_var_rth.o |
| 12-Jan-2018 16:35:18 | In file included from /usr/include/math.h:26:0, |
| 12-Jan-2018 16:35:18 | from nco_var_rth.h:21, |
| 12-Jan-2018 16:35:18 | from nco_var_rth.c:10: |
| 12-Jan-2018 16:35:18 | /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 12-Jan-2018 16:35:18 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 12-Jan-2018 16:35:18 | ^~~~~~~ |
| 12-Jan-2018 16:35:19 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_var_rth.lo -MD -MP -MF .deps/nco_var_rth.Tpo -c nco_var_rth.c -o nco_var_rth.o >/dev/null 2>&1 |
| 12-Jan-2018 16:35:21 | mv -f .deps/nco_var_rth.Tpo .deps/nco_var_rth.Plo |
| 12-Jan-2018 16:35:21 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_var_scv.lo -MD -MP -MF .deps/nco_var_scv.Tpo -c -o nco_var_scv.lo nco_var_scv.c |
| 12-Jan-2018 16:35:21 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_var_scv.lo -MD -MP -MF .deps/nco_var_scv.Tpo -c nco_var_scv.c -fPIC -DPIC -o .libs/nco_var_scv.o |
| 12-Jan-2018 16:35:21 | In file included from /usr/include/math.h:26:0, |
| 12-Jan-2018 16:35:21 | from nco_var_scv.h:17, |
| 12-Jan-2018 16:35:21 | from nco_var_scv.c:10: |
| 12-Jan-2018 16:35:21 | /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 12-Jan-2018 16:35:21 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 12-Jan-2018 16:35:21 | ^~~~~~~ |
| 12-Jan-2018 16:35:21 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_var_scv.lo -MD -MP -MF .deps/nco_var_scv.Tpo -c nco_var_scv.c -o nco_var_scv.o >/dev/null 2>&1 |
| 12-Jan-2018 16:35:22 | mv -f .deps/nco_var_scv.Tpo .deps/nco_var_scv.Plo |
| 12-Jan-2018 16:35:22 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_var_utl.lo -MD -MP -MF .deps/nco_var_utl.Tpo -c -o nco_var_utl.lo nco_var_utl.c |
| 12-Jan-2018 16:35:22 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_var_utl.lo -MD -MP -MF .deps/nco_var_utl.Tpo -c nco_var_utl.c -fPIC -DPIC -o .libs/nco_var_utl.o |
| 12-Jan-2018 16:35:22 | In file included from /usr/include/assert.h:35:0, |
| 12-Jan-2018 16:35:22 | from nco_var_utl.h:21, |
| 12-Jan-2018 16:35:22 | from nco_var_utl.c:10: |
| 12-Jan-2018 16:35:22 | /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 12-Jan-2018 16:35:22 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 12-Jan-2018 16:35:22 | ^~~~~~~ |
| 12-Jan-2018 16:35:22 | libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_var_utl.lo -MD -MP -MF .deps/nco_var_utl.Tpo -c nco_var_utl.c -o nco_var_utl.o >/dev/null 2>&1 |
| 12-Jan-2018 16:35:23 | mv -f .deps/nco_var_utl.Tpo .deps/nco_var_utl.Plo |
| 12-Jan-2018 16:35:23 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=link gcc -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -release 4.6.7 -L/srv/sw/netcdf-4.4.1/lib -lnetcdf -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu -o libnco.la -rpath /srv/sw/nco-4.6.7/lib nco_att_utl.lo nco_aux.lo nco_bnr.lo nco_cln_utl.lo nco_cnf_dmn.lo nco_cnf_typ.lo nco_cnk.lo nco_cnv_arm.lo nco_cnv_csm.lo nco_ctl.lo nco_dbg.lo nco_dmn_utl.lo nco_fl_utl.lo nco_grp_utl.lo nco_grp_trv.lo nco_lmt.lo nco_lst_utl.lo nco_md5.lo nco_mmr.lo nco_msa.lo nco_mss_val.lo nco_mta.lo nco_netcdf.lo nco_omp.lo nco_pck.lo nco_ppc.lo nco_prn.lo nco_rec_var.lo nco_rgr.lo nco_rth_flt.lo nco_rth_utl.lo nco_scl_utl.lo nco_scm.lo nco_sld.lo nco_sng_utl.lo nco_srm.lo nco_var_avg.lo nco_var_lst.lo nco_var_rth.lo nco_var_scv.lo nco_var_utl.lo -ludunits2 -lexpat -lm -lnetcdf -lnetcdf -ludunits2 |
| 12-Jan-2018 16:35:23 | libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/6/crtbeginS.o .libs/nco_att_utl.o .libs/nco_aux.o .libs/nco_bnr.o .libs/nco_cln_utl.o .libs/nco_cnf_dmn.o .libs/nco_cnf_typ.o .libs/nco_cnk.o .libs/nco_cnv_arm.o .libs/nco_cnv_csm.o .libs/nco_ctl.o .libs/nco_dbg.o .libs/nco_dmn_utl.o .libs/nco_fl_utl.o .libs/nco_grp_utl.o .libs/nco_grp_trv.o .libs/nco_lmt.o .libs/nco_lst_utl.o .libs/nco_md5.o .libs/nco_mmr.o .libs/nco_msa.o .libs/nco_mss_val.o .libs/nco_mta.o .libs/nco_netcdf.o .libs/nco_omp.o .libs/nco_pck.o .libs/nco_ppc.o .libs/nco_prn.o .libs/nco_rec_var.o .libs/nco_rgr.o .libs/nco_rth_flt.o .libs/nco_rth_utl.o .libs/nco_scl_utl.o .libs/nco_scm.o .libs/nco_sld.o .libs/nco_sng_utl.o .libs/nco_srm.o .libs/nco_var_avg.o .libs/nco_var_lst.o .libs/nco_var_rth.o .libs/nco_var_scv.o .libs/nco_var_utl.o -Wl,-rpath -Wl,/srv/sw/netcdf-4.4.1/lib -Wl,-rpath -Wl,/srv/sw/netcdf-4.4.1/lib -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu /usr/lib/x86_64-linux-gnu/libexpat.so /srv/sw/netcdf-4.4.1/lib/libnetcdf.so -ludunits2 -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/6/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/6/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/6/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/crtn.o -O2 -fopenmp -fopenmp -Wl,-soname -Wl,libnco-4.6.7.so -o .libs/libnco-4.6.7.so |
| 12-Jan-2018 16:35:23 | libtool: link: (cd ".libs" && rm -f "libnco.so" && ln -s "libnco-4.6.7.so" "libnco.so") |
| 12-Jan-2018 16:35:23 | libtool: link: ar cru .libs/libnco.a nco_att_utl.o nco_aux.o nco_bnr.o nco_cln_utl.o nco_cnf_dmn.o nco_cnf_typ.o nco_cnk.o nco_cnv_arm.o nco_cnv_csm.o nco_ctl.o nco_dbg.o nco_dmn_utl.o nco_fl_utl.o nco_grp_utl.o nco_grp_trv.o nco_lmt.o nco_lst_utl.o nco_md5.o nco_mmr.o nco_msa.o nco_mss_val.o nco_mta.o nco_netcdf.o nco_omp.o nco_pck.o nco_ppc.o nco_prn.o nco_rec_var.o nco_rgr.o nco_rth_flt.o nco_rth_utl.o nco_scl_utl.o nco_scm.o nco_sld.o nco_sng_utl.o nco_srm.o nco_var_avg.o nco_var_lst.o nco_var_rth.o nco_var_scv.o nco_var_utl.o |
| 12-Jan-2018 16:35:23 | ar: `u' modifier ignored since `D' is the default (see `U') |
| 12-Jan-2018 16:35:23 | libtool: link: ranlib .libs/libnco.a |
| 12-Jan-2018 16:35:23 | libtool: link: ( cd ".libs" && rm -f "libnco.la" && ln -s "../libnco.la" "libnco.la" ) |
| 12-Jan-2018 16:35:23 | gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT ncap_utl.o -MD -MP -MF .deps/ncap_utl.Tpo -c -o ncap_utl.o ncap_utl.c |
| 12-Jan-2018 16:35:23 | In file included from /usr/include/assert.h:35:0, |
| 12-Jan-2018 16:35:23 | from ncap_utl.c:10: |
| 12-Jan-2018 16:35:23 | /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 12-Jan-2018 16:35:23 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 12-Jan-2018 16:35:23 | ^~~~~~~ |
| 12-Jan-2018 16:35:24 | mv -f .deps/ncap_utl.Tpo .deps/ncap_utl.Po |
| 12-Jan-2018 16:35:24 | gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT ncap.o -MD -MP -MF .deps/ncap.Tpo -c -o ncap.o ncap.c |
| 12-Jan-2018 16:35:24 | In file included from /usr/include/assert.h:35:0, |
| 12-Jan-2018 16:35:24 | from ncap.c:41: |
| 12-Jan-2018 16:35:24 | /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 12-Jan-2018 16:35:24 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 12-Jan-2018 16:35:24 | ^~~~~~~ |
| 12-Jan-2018 16:35:24 | mv -f .deps/ncap.Tpo .deps/ncap.Po |
| 12-Jan-2018 16:35:24 | gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT ncap_yacc.o -MD -MP -MF .deps/ncap_yacc.Tpo -c -o ncap_yacc.o ncap_yacc.c |
| 12-Jan-2018 16:35:24 | In file included from /usr/include/math.h:26:0, |
| 12-Jan-2018 16:35:24 | from ncap_yacc.y:41: |
| 12-Jan-2018 16:35:24 | /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 12-Jan-2018 16:35:24 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 12-Jan-2018 16:35:24 | ^~~~~~~ |
| 12-Jan-2018 16:35:24 | mv -f .deps/ncap_yacc.Tpo .deps/ncap_yacc.Po |
| 12-Jan-2018 16:35:24 | test -f ncap_lex.c || /bin/bash ../../autobld/ylwrap ncap_lex.l lex.nco_yy.c ncap_lex.c -- flex -Pnco_yy |
| 12-Jan-2018 16:35:24 | gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT ncap_lex.o -MD -MP -MF .deps/ncap_lex.Tpo -c -o ncap_lex.o ncap_lex.c |
| 12-Jan-2018 16:35:24 | In file included from /usr/include/stdio.h:27:0, |
| 12-Jan-2018 16:35:24 | from ncap_lex.c:38: |
| 12-Jan-2018 16:35:24 | /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 12-Jan-2018 16:35:24 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 12-Jan-2018 16:35:24 | ^~~~~~~ |
| 12-Jan-2018 16:35:25 | mv -f .deps/ncap_lex.Tpo .deps/ncap_lex.Po |
| 12-Jan-2018 16:35:25 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=link gcc -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -L/srv/sw/netcdf-4.4.1/lib -lnetcdf -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu -o ncap ncap_utl.o ncap.o ncap_yacc.o ncap_lex.o libnco.la -ludunits2 -lexpat -lm -lnetcdf -lnetcdf -ludunits2 |
| 12-Jan-2018 16:35:25 | libtool: link: gcc -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -o .libs/ncap ncap_utl.o ncap.o ncap_yacc.o ncap_lex.o -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu ./.libs/libnco.so /usr/lib/x86_64-linux-gnu/libexpat.so -lm /srv/sw/netcdf-4.4.1/lib/libnetcdf.so -ludunits2 -fopenmp -Wl,-rpath -Wl,/srv/sw/nco-4.6.7/lib -Wl,-rpath -Wl,/srv/sw/netcdf-4.4.1/lib |
| 12-Jan-2018 16:35:25 | gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT ncatted.o -MD -MP -MF .deps/ncatted.Tpo -c -o ncatted.o ncatted.c |
| 12-Jan-2018 16:35:25 | In file included from /usr/include/math.h:26:0, |
| 12-Jan-2018 16:35:25 | from ncatted.c:104: |
| 12-Jan-2018 16:35:25 | /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 12-Jan-2018 16:35:25 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 12-Jan-2018 16:35:25 | ^~~~~~~ |
| 12-Jan-2018 16:35:25 | mv -f .deps/ncatted.Tpo .deps/ncatted.Po |
| 12-Jan-2018 16:35:25 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=link gcc -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -L/srv/sw/netcdf-4.4.1/lib -lnetcdf -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu -o ncatted ncatted.o libnco.la -ludunits2 -lexpat -lm -lnetcdf -lnetcdf -ludunits2 |
| 12-Jan-2018 16:35:26 | libtool: link: gcc -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -o .libs/ncatted ncatted.o -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu ./.libs/libnco.so /usr/lib/x86_64-linux-gnu/libexpat.so -lm /srv/sw/netcdf-4.4.1/lib/libnetcdf.so -ludunits2 -fopenmp -Wl,-rpath -Wl,/srv/sw/nco-4.6.7/lib -Wl,-rpath -Wl,/srv/sw/netcdf-4.4.1/lib |
| 12-Jan-2018 16:35:26 | gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT ncbo.o -MD -MP -MF .deps/ncbo.Tpo -c -o ncbo.o ncbo.c |
| 12-Jan-2018 16:35:26 | In file included from /usr/include/math.h:26:0, |
| 12-Jan-2018 16:35:26 | from ncbo.c:58: |
| 12-Jan-2018 16:35:26 | /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 12-Jan-2018 16:35:26 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 12-Jan-2018 16:35:26 | ^~~~~~~ |
| 12-Jan-2018 16:35:26 | mv -f .deps/ncbo.Tpo .deps/ncbo.Po |
| 12-Jan-2018 16:35:26 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=link gcc -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -L/srv/sw/netcdf-4.4.1/lib -lnetcdf -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu -o ncbo ncbo.o libnco.la -ludunits2 -lexpat -lm -lnetcdf -lnetcdf -ludunits2 |
| 12-Jan-2018 16:35:26 | libtool: link: gcc -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -o .libs/ncbo ncbo.o -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu ./.libs/libnco.so /usr/lib/x86_64-linux-gnu/libexpat.so -lm /srv/sw/netcdf-4.4.1/lib/libnetcdf.so -ludunits2 -fopenmp -Wl,-rpath -Wl,/srv/sw/nco-4.6.7/lib -Wl,-rpath -Wl,/srv/sw/netcdf-4.4.1/lib |
| 12-Jan-2018 16:35:26 | gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT ncecat.o -MD -MP -MF .deps/ncecat.Tpo -c -o ncecat.o ncecat.c |
| 12-Jan-2018 16:35:26 | In file included from /usr/include/math.h:26:0, |
| 12-Jan-2018 16:35:26 | from ncecat.c:46: |
| 12-Jan-2018 16:35:26 | /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 12-Jan-2018 16:35:26 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 12-Jan-2018 16:35:26 | ^~~~~~~ |
| 12-Jan-2018 16:35:27 | mv -f .deps/ncecat.Tpo .deps/ncecat.Po |
| 12-Jan-2018 16:35:27 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=link gcc -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -L/srv/sw/netcdf-4.4.1/lib -lnetcdf -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu -o ncecat ncecat.o libnco.la -ludunits2 -lexpat -lm -lnetcdf -lnetcdf -ludunits2 |
| 12-Jan-2018 16:35:27 | libtool: link: gcc -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -o .libs/ncecat ncecat.o -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu ./.libs/libnco.so /usr/lib/x86_64-linux-gnu/libexpat.so -lm /srv/sw/netcdf-4.4.1/lib/libnetcdf.so -ludunits2 -fopenmp -Wl,-rpath -Wl,/srv/sw/nco-4.6.7/lib -Wl,-rpath -Wl,/srv/sw/netcdf-4.4.1/lib |
| 12-Jan-2018 16:35:27 | gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT ncflint.o -MD -MP -MF .deps/ncflint.Tpo -c -o ncflint.o ncflint.c |
| 12-Jan-2018 16:35:27 | In file included from /usr/include/math.h:26:0, |
| 12-Jan-2018 16:35:27 | from ncflint.c:43: |
| 12-Jan-2018 16:35:27 | /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 12-Jan-2018 16:35:27 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 12-Jan-2018 16:35:27 | ^~~~~~~ |
| 12-Jan-2018 16:35:27 | mv -f .deps/ncflint.Tpo .deps/ncflint.Po |
| 12-Jan-2018 16:35:27 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=link gcc -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -L/srv/sw/netcdf-4.4.1/lib -lnetcdf -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu -o ncflint ncflint.o libnco.la -ludunits2 -lexpat -lm -lnetcdf -lnetcdf -ludunits2 |
| 12-Jan-2018 16:35:27 | libtool: link: gcc -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -o .libs/ncflint ncflint.o -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu ./.libs/libnco.so /usr/lib/x86_64-linux-gnu/libexpat.so -lm /srv/sw/netcdf-4.4.1/lib/libnetcdf.so -ludunits2 -fopenmp -Wl,-rpath -Wl,/srv/sw/nco-4.6.7/lib -Wl,-rpath -Wl,/srv/sw/netcdf-4.4.1/lib |
| 12-Jan-2018 16:35:28 | gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT ncks.o -MD -MP -MF .deps/ncks.Tpo -c -o ncks.o ncks.c |
| 12-Jan-2018 16:35:28 | In file included from /usr/include/assert.h:35:0, |
| 12-Jan-2018 16:35:28 | from ncks.c:67: |
| 12-Jan-2018 16:35:28 | /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 12-Jan-2018 16:35:28 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 12-Jan-2018 16:35:28 | ^~~~~~~ |
| 12-Jan-2018 16:35:28 | mv -f .deps/ncks.Tpo .deps/ncks.Po |
| 12-Jan-2018 16:35:28 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=link gcc -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -L/srv/sw/netcdf-4.4.1/lib -lnetcdf -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu -o ncks ncks.o libnco.la -ludunits2 -lexpat -lm -lnetcdf -lnetcdf -ludunits2 |
| 12-Jan-2018 16:35:28 | libtool: link: gcc -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -o .libs/ncks ncks.o -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu ./.libs/libnco.so /usr/lib/x86_64-linux-gnu/libexpat.so -lm /srv/sw/netcdf-4.4.1/lib/libnetcdf.so -ludunits2 -fopenmp -Wl,-rpath -Wl,/srv/sw/nco-4.6.7/lib -Wl,-rpath -Wl,/srv/sw/netcdf-4.4.1/lib |
| 12-Jan-2018 16:35:28 | gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT ncpdq.o -MD -MP -MF .deps/ncpdq.Tpo -c -o ncpdq.o ncpdq.c |
| 12-Jan-2018 16:35:29 | In file included from /usr/include/math.h:26:0, |
| 12-Jan-2018 16:35:29 | from ncpdq.c:46: |
| 12-Jan-2018 16:35:29 | /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 12-Jan-2018 16:35:29 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 12-Jan-2018 16:35:29 | ^~~~~~~ |
| 12-Jan-2018 16:35:29 | mv -f .deps/ncpdq.Tpo .deps/ncpdq.Po |
| 12-Jan-2018 16:35:29 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=link gcc -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -L/srv/sw/netcdf-4.4.1/lib -lnetcdf -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu -o ncpdq ncpdq.o libnco.la -ludunits2 -lexpat -lm -lnetcdf -lnetcdf -ludunits2 |
| 12-Jan-2018 16:35:29 | libtool: link: gcc -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -o .libs/ncpdq ncpdq.o -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu ./.libs/libnco.so /usr/lib/x86_64-linux-gnu/libexpat.so -lm /srv/sw/netcdf-4.4.1/lib/libnetcdf.so -ludunits2 -fopenmp -Wl,-rpath -Wl,/srv/sw/nco-4.6.7/lib -Wl,-rpath -Wl,/srv/sw/netcdf-4.4.1/lib |
| 12-Jan-2018 16:35:29 | gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT ncra.o -MD -MP -MF .deps/ncra.Tpo -c -o ncra.o ncra.c |
| 12-Jan-2018 16:35:29 | In file included from /usr/include/math.h:26:0, |
| 12-Jan-2018 16:35:29 | from ncra.c:62: |
| 12-Jan-2018 16:35:29 | /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 12-Jan-2018 16:35:29 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 12-Jan-2018 16:35:29 | ^~~~~~~ |
| 12-Jan-2018 16:35:30 | mv -f .deps/ncra.Tpo .deps/ncra.Po |
| 12-Jan-2018 16:35:30 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=link gcc -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -L/srv/sw/netcdf-4.4.1/lib -lnetcdf -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu -o ncra ncra.o libnco.la -ludunits2 -lexpat -lm -lnetcdf -lnetcdf -ludunits2 |
| 12-Jan-2018 16:35:31 | libtool: link: gcc -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -o .libs/ncra ncra.o -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu ./.libs/libnco.so /usr/lib/x86_64-linux-gnu/libexpat.so -lm /srv/sw/netcdf-4.4.1/lib/libnetcdf.so -ludunits2 -fopenmp -Wl,-rpath -Wl,/srv/sw/nco-4.6.7/lib -Wl,-rpath -Wl,/srv/sw/netcdf-4.4.1/lib |
| 12-Jan-2018 16:35:31 | gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT ncrename.o -MD -MP -MF .deps/ncrename.Tpo -c -o ncrename.o ncrename.c |
| 12-Jan-2018 16:35:31 | In file included from /usr/include/math.h:26:0, |
| 12-Jan-2018 16:35:31 | from ncrename.c:42: |
| 12-Jan-2018 16:35:31 | /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 12-Jan-2018 16:35:31 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 12-Jan-2018 16:35:31 | ^~~~~~~ |
| 12-Jan-2018 16:35:31 | mv -f .deps/ncrename.Tpo .deps/ncrename.Po |
| 12-Jan-2018 16:35:31 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=link gcc -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -L/srv/sw/netcdf-4.4.1/lib -lnetcdf -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu -o ncrename ncrename.o libnco.la -ludunits2 -lexpat -lm -lnetcdf -lnetcdf -ludunits2 |
| 12-Jan-2018 16:35:31 | libtool: link: gcc -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -o .libs/ncrename ncrename.o -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu ./.libs/libnco.so /usr/lib/x86_64-linux-gnu/libexpat.so -lm /srv/sw/netcdf-4.4.1/lib/libnetcdf.so -ludunits2 -fopenmp -Wl,-rpath -Wl,/srv/sw/nco-4.6.7/lib -Wl,-rpath -Wl,/srv/sw/netcdf-4.4.1/lib |
| 12-Jan-2018 16:35:31 | gcc -DHAVE_CONFIG_H -I. -I../.. -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT ncwa.o -MD -MP -MF .deps/ncwa.Tpo -c -o ncwa.o ncwa.c |
| 12-Jan-2018 16:35:31 | In file included from /usr/include/math.h:26:0, |
| 12-Jan-2018 16:35:31 | from ncwa.c:44: |
| 12-Jan-2018 16:35:31 | /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] |
| 12-Jan-2018 16:35:31 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" |
| 12-Jan-2018 16:35:31 | ^~~~~~~ |
| 12-Jan-2018 16:35:32 | mv -f .deps/ncwa.Tpo .deps/ncwa.Po |
| 12-Jan-2018 16:35:32 | /bin/bash ../../libtool --tag=CXX --tag=CC --mode=link gcc -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -L/srv/sw/netcdf-4.4.1/lib -lnetcdf -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu -o ncwa ncwa.o ncap_utl.o ncap_lex.o ncap_yacc.o libnco.la -ludunits2 -lexpat -lm -lnetcdf -lnetcdf -ludunits2 |
| 12-Jan-2018 16:35:32 | libtool: link: gcc -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -o .libs/ncwa ncwa.o ncap_utl.o ncap_lex.o ncap_yacc.o -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu ./.libs/libnco.so /usr/lib/x86_64-linux-gnu/libexpat.so -lm /srv/sw/netcdf-4.4.1/lib/libnetcdf.so -ludunits2 -fopenmp -Wl,-rpath -Wl,/srv/sw/nco-4.6.7/lib -Wl,-rpath -Wl,/srv/sw/netcdf-4.4.1/lib |
| 12-Jan-2018 16:35:32 | make[4]: Leaving directory '/srv/downloads/nco-4.6.7/src/nco' |
| 12-Jan-2018 16:35:32 | make[3]: Leaving directory '/srv/downloads/nco-4.6.7/src/nco' |
| 12-Jan-2018 16:35:32 | Making all in nco_c++ |
| 12-Jan-2018 16:35:32 | make[3]: Entering directory '/srv/downloads/nco-4.6.7/src/nco_c++' |
| 12-Jan-2018 16:35:32 | /bin/bash ../../libtool --tag=CXX --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT libnco_c___la-nco_att.lo -MD -MP -MF .deps/libnco_c___la-nco_att.Tpo -c -o libnco_c___la-nco_att.lo `test -f 'nco_att.cc' || echo './'`nco_att.cc |
| 12-Jan-2018 16:35:32 | libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT libnco_c___la-nco_att.lo -MD -MP -MF .deps/libnco_c___la-nco_att.Tpo -c nco_att.cc -fPIC -DPIC -o .libs/libnco_c___la-nco_att.o |
| 12-Jan-2018 16:35:33 | libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT libnco_c___la-nco_att.lo -MD -MP -MF .deps/libnco_c___la-nco_att.Tpo -c nco_att.cc -o libnco_c___la-nco_att.o >/dev/null 2>&1 |
| 12-Jan-2018 16:35:33 | mv -f .deps/libnco_c___la-nco_att.Tpo .deps/libnco_c___la-nco_att.Plo |
| 12-Jan-2018 16:35:33 | /bin/bash ../../libtool --tag=CXX --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT libnco_c___la-nco_dmn.lo -MD -MP -MF .deps/libnco_c___la-nco_dmn.Tpo -c -o libnco_c___la-nco_dmn.lo `test -f 'nco_dmn.cc' || echo './'`nco_dmn.cc |
| 12-Jan-2018 16:35:34 | libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT libnco_c___la-nco_dmn.lo -MD -MP -MF .deps/libnco_c___la-nco_dmn.Tpo -c nco_dmn.cc -fPIC -DPIC -o .libs/libnco_c___la-nco_dmn.o |
| 12-Jan-2018 16:35:34 | libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT libnco_c___la-nco_dmn.lo -MD -MP -MF .deps/libnco_c___la-nco_dmn.Tpo -c nco_dmn.cc -o libnco_c___la-nco_dmn.o >/dev/null 2>&1 |
| 12-Jan-2018 16:35:35 | mv -f .deps/libnco_c___la-nco_dmn.Tpo .deps/libnco_c___la-nco_dmn.Plo |
| 12-Jan-2018 16:35:35 | /bin/bash ../../libtool --tag=CXX --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT libnco_c___la-nco_fl.lo -MD -MP -MF .deps/libnco_c___la-nco_fl.Tpo -c -o libnco_c___la-nco_fl.lo `test -f 'nco_fl.cc' || echo './'`nco_fl.cc |
| 12-Jan-2018 16:35:35 | libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT libnco_c___la-nco_fl.lo -MD -MP -MF .deps/libnco_c___la-nco_fl.Tpo -c nco_fl.cc -fPIC -DPIC -o .libs/libnco_c___la-nco_fl.o |
| 12-Jan-2018 16:35:35 | libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT libnco_c___la-nco_fl.lo -MD -MP -MF .deps/libnco_c___la-nco_fl.Tpo -c nco_fl.cc -o libnco_c___la-nco_fl.o >/dev/null 2>&1 |
| 12-Jan-2018 16:35:36 | mv -f .deps/libnco_c___la-nco_fl.Tpo .deps/libnco_c___la-nco_fl.Plo |
| 12-Jan-2018 16:35:36 | /bin/bash ../../libtool --tag=CXX --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT libnco_c___la-nco_hgh.lo -MD -MP -MF .deps/libnco_c___la-nco_hgh.Tpo -c -o libnco_c___la-nco_hgh.lo `test -f 'nco_hgh.cc' || echo './'`nco_hgh.cc |
| 12-Jan-2018 16:35:36 | libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT libnco_c___la-nco_hgh.lo -MD -MP -MF .deps/libnco_c___la-nco_hgh.Tpo -c nco_hgh.cc -fPIC -DPIC -o .libs/libnco_c___la-nco_hgh.o |
| 12-Jan-2018 16:35:36 | libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT libnco_c___la-nco_hgh.lo -MD -MP -MF .deps/libnco_c___la-nco_hgh.Tpo -c nco_hgh.cc -o libnco_c___la-nco_hgh.o >/dev/null 2>&1 |
| 12-Jan-2018 16:35:37 | mv -f .deps/libnco_c___la-nco_hgh.Tpo .deps/libnco_c___la-nco_hgh.Plo |
| 12-Jan-2018 16:35:37 | /bin/bash ../../libtool --tag=CXX --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT libnco_c___la-nco_utl.lo -MD -MP -MF .deps/libnco_c___la-nco_utl.Tpo -c -o libnco_c___la-nco_utl.lo `test -f 'nco_utl.cc' || echo './'`nco_utl.cc |
| 12-Jan-2018 16:35:37 | libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT libnco_c___la-nco_utl.lo -MD -MP -MF .deps/libnco_c___la-nco_utl.Tpo -c nco_utl.cc -fPIC -DPIC -o .libs/libnco_c___la-nco_utl.o |
| 12-Jan-2018 16:35:38 | libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT libnco_c___la-nco_utl.lo -MD -MP -MF .deps/libnco_c___la-nco_utl.Tpo -c nco_utl.cc -o libnco_c___la-nco_utl.o >/dev/null 2>&1 |
| 12-Jan-2018 16:35:38 | mv -f .deps/libnco_c___la-nco_utl.Tpo .deps/libnco_c___la-nco_utl.Plo |
| 12-Jan-2018 16:35:38 | /bin/bash ../../libtool --tag=CXX --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT libnco_c___la-nco_var.lo -MD -MP -MF .deps/libnco_c___la-nco_var.Tpo -c -o libnco_c___la-nco_var.lo `test -f 'nco_var.cc' || echo './'`nco_var.cc |
| 12-Jan-2018 16:35:38 | libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT libnco_c___la-nco_var.lo -MD -MP -MF .deps/libnco_c___la-nco_var.Tpo -c nco_var.cc -fPIC -DPIC -o .libs/libnco_c___la-nco_var.o |
| 12-Jan-2018 16:35:40 | libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT libnco_c___la-nco_var.lo -MD -MP -MF .deps/libnco_c___la-nco_var.Tpo -c nco_var.cc -o libnco_c___la-nco_var.o >/dev/null 2>&1 |
| 12-Jan-2018 16:35:42 | mv -f .deps/libnco_c___la-nco_var.Tpo .deps/libnco_c___la-nco_var.Plo |
| 12-Jan-2018 16:35:42 | /bin/bash ../../libtool --tag=CXX --tag=CXX --mode=link g++ -g -O2 -release 4.6.7 -L/srv/sw/netcdf-4.4.1/lib -lnetcdf -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu -o libnco_c++.la -rpath /srv/sw/nco-4.6.7/lib libnco_c___la-nco_att.lo libnco_c___la-nco_dmn.lo libnco_c___la-nco_fl.lo libnco_c___la-nco_hgh.lo libnco_c___la-nco_utl.lo libnco_c___la-nco_var.lo -ludunits2 -lexpat -lm -lnetcdf -lnetcdf -ludunits2 |
| 12-Jan-2018 16:35:42 | libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/6/crtbeginS.o .libs/libnco_c___la-nco_att.o .libs/libnco_c___la-nco_dmn.o .libs/libnco_c___la-nco_fl.o .libs/libnco_c___la-nco_hgh.o .libs/libnco_c___la-nco_utl.o .libs/libnco_c___la-nco_var.o -Wl,-rpath -Wl,/srv/sw/netcdf-4.4.1/lib -Wl,-rpath -Wl,/srv/sw/netcdf-4.4.1/lib -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu /usr/lib/x86_64-linux-gnu/libexpat.so /srv/sw/netcdf-4.4.1/lib/libnetcdf.so -ludunits2 -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/6/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/6/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/6/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/crtn.o -O2 -Wl,-soname -Wl,libnco_c++-4.6.7.so -o .libs/libnco_c++-4.6.7.so |
| 12-Jan-2018 16:35:42 | libtool: link: (cd ".libs" && rm -f "libnco_c++.so" && ln -s "libnco_c++-4.6.7.so" "libnco_c++.so") |
| 12-Jan-2018 16:35:42 | libtool: link: ar cru .libs/libnco_c++.a libnco_c___la-nco_att.o libnco_c___la-nco_dmn.o libnco_c___la-nco_fl.o libnco_c___la-nco_hgh.o libnco_c___la-nco_utl.o libnco_c___la-nco_var.o |
| 12-Jan-2018 16:35:42 | ar: `u' modifier ignored since `D' is the default (see `U') |
| 12-Jan-2018 16:35:42 | libtool: link: ranlib .libs/libnco_c++.a |
| 12-Jan-2018 16:35:42 | libtool: link: ( cd ".libs" && rm -f "libnco_c++.la" && ln -s "../libnco_c++.la" "libnco_c++.la" ) |
| 12-Jan-2018 16:35:42 | make[3]: Leaving directory '/srv/downloads/nco-4.6.7/src/nco_c++' |
| 12-Jan-2018 16:35:42 | Making all in nco++ |
| 12-Jan-2018 16:35:42 | make[3]: Entering directory '/srv/downloads/nco-4.6.7/src/nco++' |
| 12-Jan-2018 16:35:42 | g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT Invoke.o -MD -MP -MF .deps/Invoke.Tpo -c -o Invoke.o Invoke.cc |
| 12-Jan-2018 16:35:45 | mv -f .deps/Invoke.Tpo .deps/Invoke.Po |
| 12-Jan-2018 16:35:45 | g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT ncap2.o -MD -MP -MF .deps/ncap2.Tpo -c -o ncap2.o ncap2.cc |
| 12-Jan-2018 16:35:47 | mv -f .deps/ncap2.Tpo .deps/ncap2.Po |
| 12-Jan-2018 16:35:47 | g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT ncap2_utl.o -MD -MP -MF .deps/ncap2_utl.Tpo -c -o ncap2_utl.o ncap2_utl.cc |
| 12-Jan-2018 16:35:56 | mv -f .deps/ncap2_utl.Tpo .deps/ncap2_utl.Po |
| 12-Jan-2018 16:35:56 | g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT ncap2_att.o -MD -MP -MF .deps/ncap2_att.Tpo -c -o ncap2_att.o ncap2_att.cc |
| 12-Jan-2018 16:35:57 | mv -f .deps/ncap2_att.Tpo .deps/ncap2_att.Po |
| 12-Jan-2018 16:35:57 | g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT sdo_utl.o -MD -MP -MF .deps/sdo_utl.Tpo -c -o sdo_utl.o sdo_utl.cc |
| 12-Jan-2018 16:35:58 | mv -f .deps/sdo_utl.Tpo .deps/sdo_utl.Po |
| 12-Jan-2018 16:35:58 | g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT sym_cls.o -MD -MP -MF .deps/sym_cls.Tpo -c -o sym_cls.o sym_cls.cc |
| 12-Jan-2018 16:35:58 | mv -f .deps/sym_cls.Tpo .deps/sym_cls.Po |
| 12-Jan-2018 16:35:58 | g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT fmc_cls.o -MD -MP -MF .deps/fmc_cls.Tpo -c -o fmc_cls.o fmc_cls.cc |
| 12-Jan-2018 16:35:59 | mv -f .deps/fmc_cls.Tpo .deps/fmc_cls.Po |
| 12-Jan-2018 16:35:59 | g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT fmc_all_cls.o -MD -MP -MF .deps/fmc_all_cls.Tpo -c -o fmc_all_cls.o fmc_all_cls.cc |
| 12-Jan-2018 16:36:09 | mv -f .deps/fmc_all_cls.Tpo .deps/fmc_all_cls.Po |
| 12-Jan-2018 16:36:09 | g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT fmc_gsl_cls.o -MD -MP -MF .deps/fmc_gsl_cls.Tpo -c -o fmc_gsl_cls.o fmc_gsl_cls.cc |
| 12-Jan-2018 16:36:09 | mv -f .deps/fmc_gsl_cls.Tpo .deps/fmc_gsl_cls.Po |
| 12-Jan-2018 16:36:09 | g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT prs_cls.o -MD -MP -MF .deps/prs_cls.Tpo -c -o prs_cls.o prs_cls.cc |
| 12-Jan-2018 16:36:10 | mv -f .deps/prs_cls.Tpo .deps/prs_cls.Po |
| 12-Jan-2018 16:36:10 | g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT NcapVar.o -MD -MP -MF .deps/NcapVar.Tpo -c -o NcapVar.o NcapVar.cc |
| 12-Jan-2018 16:36:10 | mv -f .deps/NcapVar.Tpo .deps/NcapVar.Po |
| 12-Jan-2018 16:36:10 | g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT NcapVarVector.o -MD -MP -MF .deps/NcapVarVector.Tpo -c -o NcapVarVector.o NcapVarVector.cc |
| 12-Jan-2018 16:36:11 | mv -f .deps/NcapVarVector.Tpo .deps/NcapVarVector.Po |
| 12-Jan-2018 16:36:11 | g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT ncoLexer.o -MD -MP -MF .deps/ncoLexer.Tpo -c -o ncoLexer.o ncoLexer.cpp |
| 12-Jan-2018 16:36:14 | mv -f .deps/ncoLexer.Tpo .deps/ncoLexer.Po |
| 12-Jan-2018 16:36:14 | g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT ncoParser.o -MD -MP -MF .deps/ncoParser.Tpo -c -o ncoParser.o ncoParser.cpp |
| 12-Jan-2018 16:36:18 | mv -f .deps/ncoParser.Tpo .deps/ncoParser.Po |
| 12-Jan-2018 16:36:18 | g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -MT ncoTree.o -MD -MP -MF .deps/ncoTree.Tpo -c -o ncoTree.o ncoTree.cpp |
| 12-Jan-2018 16:36:28 | mv -f .deps/ncoTree.Tpo .deps/ncoTree.Po |
| 12-Jan-2018 16:36:28 | gcc -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/srv/sw/netcdf-4.4.1/include -I/srv/sw/netcdf-4.4.1/include -I/usr/include -g -O2 -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -MT nco_gsl.o -MD -MP -MF .deps/nco_gsl.Tpo -c -o nco_gsl.o nco_gsl.c |
| 12-Jan-2018 16:36:28 | mv -f .deps/nco_gsl.Tpo .deps/nco_gsl.Po |
| 12-Jan-2018 16:36:28 | /bin/bash ../../libtool --tag=CXX --tag=CXX --mode=link g++ -g -O2 -L../nco -lnco -lantlr -L/srv/sw/netcdf-4.4.1/lib -lnetcdf -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu -o ncap2 Invoke.o ncap2.o ncap2_utl.o ncap2_att.o sdo_utl.o sym_cls.o fmc_cls.o fmc_all_cls.o fmc_gsl_cls.o prs_cls.o NcapVar.o NcapVarVector.o ncoLexer.o ncoParser.o ncoTree.o nco_gsl.o -ludunits2 -lexpat -lm -lnetcdf -lnetcdf -ludunits2 |
| 12-Jan-2018 16:36:28 | libtool: link: g++ -g -O2 -o .libs/ncap2 Invoke.o ncap2.o ncap2_utl.o ncap2_att.o sdo_utl.o sym_cls.o fmc_cls.o fmc_all_cls.o fmc_gsl_cls.o prs_cls.o NcapVar.o NcapVarVector.o ncoLexer.o ncoParser.o ncoTree.o nco_gsl.o -L../nco /srv/downloads/nco-4.6.7/src/nco/.libs/libnco.so -lantlr -L/srv/sw/netcdf-4.4.1/lib -L/usr/lib/x86_64-linux-gnu /usr/lib/x86_64-linux-gnu/libexpat.so -lm /srv/sw/netcdf-4.4.1/lib/libnetcdf.so -ludunits2 -fopenmp -Wl,-rpath -Wl,/srv/sw/nco-4.6.7/lib -Wl,-rpath -Wl,/srv/sw/netcdf-4.4.1/lib |
| 12-Jan-2018 16:36:29 | make[3]: Leaving directory '/srv/downloads/nco-4.6.7/src/nco++' |
| 12-Jan-2018 16:36:29 | make[3]: Entering directory '/srv/downloads/nco-4.6.7/src' |
| 12-Jan-2018 16:36:29 | make[3]: Nothing to be done for 'all-am'. |
| 12-Jan-2018 16:36:29 | make[3]: Leaving directory '/srv/downloads/nco-4.6.7/src' |
| 12-Jan-2018 16:36:29 | make[2]: Leaving directory '/srv/downloads/nco-4.6.7/src' |
| 12-Jan-2018 16:36:29 | Making all in man |
| 12-Jan-2018 16:36:29 | make[2]: Entering directory '/srv/downloads/nco-4.6.7/man' |
| 12-Jan-2018 16:36:29 | make[2]: Nothing to be done for 'all'. |
| 12-Jan-2018 16:36:29 | make[2]: Leaving directory '/srv/downloads/nco-4.6.7/man' |
| 12-Jan-2018 16:36:29 | make[2]: Entering directory '/srv/downloads/nco-4.6.7' |
| 12-Jan-2018 16:36:29 | make[2]: Leaving directory '/srv/downloads/nco-4.6.7' |
| 12-Jan-2018 16:36:29 | make[1]: Leaving directory '/srv/downloads/nco-4.6.7' |
| 12-Jan-2018 16:36:29 | Making install in data |
| 12-Jan-2018 16:36:29 | make[1]: Entering directory '/srv/downloads/nco-4.6.7/data' |
| 12-Jan-2018 16:36:29 | make[2]: Entering directory '/srv/downloads/nco-4.6.7/data' |
| 12-Jan-2018 16:36:29 | /bin/mkdir -p '/srv/sw/nco-4.6.7/bin' |
| 12-Jan-2018 16:36:29 | /usr/bin/install -c ncclimo ncremap '/srv/sw/nco-4.6.7/bin' |
| 12-Jan-2018 16:36:29 | make[2]: Nothing to be done for 'install-data-am'. |
| 12-Jan-2018 16:36:29 | make[2]: Leaving directory '/srv/downloads/nco-4.6.7/data' |
| 12-Jan-2018 16:36:29 | make[1]: Leaving directory '/srv/downloads/nco-4.6.7/data' |
| 12-Jan-2018 16:36:29 | Making install in src |
| 12-Jan-2018 16:36:29 | make[1]: Entering directory '/srv/downloads/nco-4.6.7/src' |
| 12-Jan-2018 16:36:29 | Making install in nco |
| 12-Jan-2018 16:36:29 | make[2]: Entering directory '/srv/downloads/nco-4.6.7/src/nco' |
| 12-Jan-2018 16:36:29 | make install-am |
| 12-Jan-2018 16:36:29 | make[3]: Entering directory '/srv/downloads/nco-4.6.7/src/nco' |
| 12-Jan-2018 16:36:29 | make[4]: Entering directory '/srv/downloads/nco-4.6.7/src/nco' |
| 12-Jan-2018 16:36:29 | /bin/mkdir -p '/srv/sw/nco-4.6.7/lib' |
| 12-Jan-2018 16:36:29 | /bin/bash ../../libtool --tag=CXX --mode=install /usr/bin/install -c libnco.la '/srv/sw/nco-4.6.7/lib' |
| 12-Jan-2018 16:36:29 | libtool: install: /usr/bin/install -c .libs/libnco-4.6.7.so /srv/sw/nco-4.6.7/lib/libnco-4.6.7.so |
| 12-Jan-2018 16:36:29 | libtool: install: (cd /srv/sw/nco-4.6.7/lib && { ln -s -f libnco-4.6.7.so libnco.so || { rm -f libnco.so && ln -s libnco-4.6.7.so libnco.so; }; }) |
| 12-Jan-2018 16:36:29 | libtool: install: /usr/bin/install -c .libs/libnco.lai /srv/sw/nco-4.6.7/lib/libnco.la |
| 12-Jan-2018 16:36:29 | libtool: install: /usr/bin/install -c .libs/libnco.a /srv/sw/nco-4.6.7/lib/libnco.a |
| 12-Jan-2018 16:36:29 | libtool: install: chmod 644 /srv/sw/nco-4.6.7/lib/libnco.a |
| 12-Jan-2018 16:36:29 | libtool: install: ranlib /srv/sw/nco-4.6.7/lib/libnco.a |
| 12-Jan-2018 16:36:29 | libtool: finish: PATH="/srv/sw/gdal/bin:/srv/sw/proj4/bin:/srv/sw/geos/bin:/srv/sw/netcdf-4.4.1/bin:/srv/sw/hdf5-1.8.17/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/sbin" ldconfig -n /srv/sw/nco-4.6.7/lib |
| 12-Jan-2018 16:36:29 | ---------------------------------------------------------------------- |
| 12-Jan-2018 16:36:29 | Libraries have been installed in: |
| 12-Jan-2018 16:36:29 | /srv/sw/nco-4.6.7/lib |
| 12-Jan-2018 16:36:29 | |
| 12-Jan-2018 16:36:29 | If you ever happen to want to link against installed libraries |
| 12-Jan-2018 16:36:29 | in a given directory, LIBDIR, you must either use libtool, and |
| 12-Jan-2018 16:36:29 | specify the full pathname of the library, or use the `-LLIBDIR' |
| 12-Jan-2018 16:36:29 | flag during linking and do at least one of the following: |
| 12-Jan-2018 16:36:29 | - add LIBDIR to the `LD_LIBRARY_PATH' environment variable |
| 12-Jan-2018 16:36:29 | during execution |
| 12-Jan-2018 16:36:29 | - add LIBDIR to the `LD_RUN_PATH' environment variable |
| 12-Jan-2018 16:36:29 | during linking |
| 12-Jan-2018 16:36:29 | - use the `-Wl,-rpath -Wl,LIBDIR' linker flag |
| 12-Jan-2018 16:36:29 | - have your system administrator add LIBDIR to `/etc/ld.so.conf' |
| 12-Jan-2018 16:36:29 | |
| 12-Jan-2018 16:36:29 | See any operating system documentation about shared libraries for |
| 12-Jan-2018 16:36:29 | more information, such as the ld(1) and ld.so(8) manual pages. |
| 12-Jan-2018 16:36:29 | ---------------------------------------------------------------------- |
| 12-Jan-2018 16:36:29 | /bin/mkdir -p '/srv/sw/nco-4.6.7/bin' |
| 12-Jan-2018 16:36:29 | /bin/bash ../../libtool --tag=CXX --mode=install /usr/bin/install -c ncap ncatted ncbo ncecat ncflint ncks ncpdq ncra ncrename ncwa '/srv/sw/nco-4.6.7/bin' |
| 12-Jan-2018 16:36:29 | libtool: install: /usr/bin/install -c .libs/ncap /srv/sw/nco-4.6.7/bin/ncap |
| 12-Jan-2018 16:36:29 | libtool: install: /usr/bin/install -c .libs/ncatted /srv/sw/nco-4.6.7/bin/ncatted |
| 12-Jan-2018 16:36:29 | libtool: install: /usr/bin/install -c .libs/ncbo /srv/sw/nco-4.6.7/bin/ncbo |
| 12-Jan-2018 16:36:29 | libtool: install: /usr/bin/install -c .libs/ncecat /srv/sw/nco-4.6.7/bin/ncecat |
| 12-Jan-2018 16:36:29 | libtool: install: /usr/bin/install -c .libs/ncflint /srv/sw/nco-4.6.7/bin/ncflint |
| 12-Jan-2018 16:36:29 | libtool: install: /usr/bin/install -c .libs/ncks /srv/sw/nco-4.6.7/bin/ncks |
| 12-Jan-2018 16:36:29 | libtool: install: /usr/bin/install -c .libs/ncpdq /srv/sw/nco-4.6.7/bin/ncpdq |
| 12-Jan-2018 16:36:29 | libtool: install: /usr/bin/install -c .libs/ncra /srv/sw/nco-4.6.7/bin/ncra |
| 12-Jan-2018 16:36:29 | libtool: install: /usr/bin/install -c .libs/ncrename /srv/sw/nco-4.6.7/bin/ncrename |
| 12-Jan-2018 16:36:29 | libtool: install: /usr/bin/install -c .libs/ncwa /srv/sw/nco-4.6.7/bin/ncwa |
| 12-Jan-2018 16:36:29 | make install-exec-hook |
| 12-Jan-2018 16:36:29 | make[5]: Entering directory '/srv/downloads/nco-4.6.7/src/nco' |
| 12-Jan-2018 16:36:29 | cd /srv/sw/nco-4.6.7/bin && ln -s -f ncbo ncdiff || (rm -f ncdiff && ln -s -f ncbo ncdiff) |
| 12-Jan-2018 16:36:29 | cd /srv/sw/nco-4.6.7/bin && ln -s -f ncra ncea || (rm -f ncea && ln -s -f ncra ncea) |
| 12-Jan-2018 16:36:29 | cd /srv/sw/nco-4.6.7/bin && ln -s -f ncra nces || (rm -f nces && ln -s -f ncra nces) |
| 12-Jan-2018 16:36:29 | cd /srv/sw/nco-4.6.7/bin && ln -s -f ncra ncrcat || (rm -f ncrcat && ln -s -f ncra ncrcat) |
| 12-Jan-2018 16:36:29 | make[5]: Leaving directory '/srv/downloads/nco-4.6.7/src/nco' |
| 12-Jan-2018 16:36:29 | make[4]: Nothing to be done for 'install-data-am'. |
| 12-Jan-2018 16:36:29 | make[4]: Leaving directory '/srv/downloads/nco-4.6.7/src/nco' |
| 12-Jan-2018 16:36:29 | make[3]: Leaving directory '/srv/downloads/nco-4.6.7/src/nco' |
| 12-Jan-2018 16:36:29 | make[2]: Leaving directory '/srv/downloads/nco-4.6.7/src/nco' |
| 12-Jan-2018 16:36:29 | Making install in nco_c++ |
| 12-Jan-2018 16:36:29 | make[2]: Entering directory '/srv/downloads/nco-4.6.7/src/nco_c++' |
| 12-Jan-2018 16:36:29 | make[3]: Entering directory '/srv/downloads/nco-4.6.7/src/nco_c++' |
| 12-Jan-2018 16:36:29 | /bin/mkdir -p '/srv/sw/nco-4.6.7/lib' |
| 12-Jan-2018 16:36:29 | /bin/bash ../../libtool --tag=CXX --mode=install /usr/bin/install -c libnco_c++.la '/srv/sw/nco-4.6.7/lib' |
| 12-Jan-2018 16:36:29 | libtool: install: /usr/bin/install -c .libs/libnco_c++-4.6.7.so /srv/sw/nco-4.6.7/lib/libnco_c++-4.6.7.so |
| 12-Jan-2018 16:36:29 | libtool: install: (cd /srv/sw/nco-4.6.7/lib && { ln -s -f libnco_c++-4.6.7.so libnco_c++.so || { rm -f libnco_c++.so && ln -s libnco_c++-4.6.7.so libnco_c++.so; }; }) |
| 12-Jan-2018 16:36:29 | libtool: install: /usr/bin/install -c .libs/libnco_c++.lai /srv/sw/nco-4.6.7/lib/libnco_c++.la |
| 12-Jan-2018 16:36:29 | libtool: install: /usr/bin/install -c .libs/libnco_c++.a /srv/sw/nco-4.6.7/lib/libnco_c++.a |
| 12-Jan-2018 16:36:29 | libtool: install: chmod 644 /srv/sw/nco-4.6.7/lib/libnco_c++.a |
| 12-Jan-2018 16:36:29 | libtool: install: ranlib /srv/sw/nco-4.6.7/lib/libnco_c++.a |
| 12-Jan-2018 16:36:29 | libtool: finish: PATH="/srv/sw/gdal/bin:/srv/sw/proj4/bin:/srv/sw/geos/bin:/srv/sw/netcdf-4.4.1/bin:/srv/sw/hdf5-1.8.17/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/sbin" ldconfig -n /srv/sw/nco-4.6.7/lib |
| 12-Jan-2018 16:36:29 | ---------------------------------------------------------------------- |
| 12-Jan-2018 16:36:29 | Libraries have been installed in: |
| 12-Jan-2018 16:36:29 | /srv/sw/nco-4.6.7/lib |
| 12-Jan-2018 16:36:29 | |
| 12-Jan-2018 16:36:29 | If you ever happen to want to link against installed libraries |
| 12-Jan-2018 16:36:29 | in a given directory, LIBDIR, you must either use libtool, and |
| 12-Jan-2018 16:36:29 | specify the full pathname of the library, or use the `-LLIBDIR' |
| 12-Jan-2018 16:36:29 | flag during linking and do at least one of the following: |
| 12-Jan-2018 16:36:29 | - add LIBDIR to the `LD_LIBRARY_PATH' environment variable |
| 12-Jan-2018 16:36:29 | during execution |
| 12-Jan-2018 16:36:29 | - add LIBDIR to the `LD_RUN_PATH' environment variable |
| 12-Jan-2018 16:36:29 | during linking |
| 12-Jan-2018 16:36:29 | - use the `-Wl,-rpath -Wl,LIBDIR' linker flag |
| 12-Jan-2018 16:36:29 | - have your system administrator add LIBDIR to `/etc/ld.so.conf' |
| 12-Jan-2018 16:36:29 | |
| 12-Jan-2018 16:36:29 | See any operating system documentation about shared libraries for |
| 12-Jan-2018 16:36:29 | more information, such as the ld(1) and ld.so(8) manual pages. |
| 12-Jan-2018 16:36:29 | ---------------------------------------------------------------------- |
| 12-Jan-2018 16:36:29 | /bin/mkdir -p '/srv/sw/nco-4.6.7/include' |
| 12-Jan-2018 16:36:29 | /usr/bin/install -c -m 644 libnco_c++.hh nco_dmn.hh nco_hgh.hh nco_var.hh nco_att.hh nco_fl.hh nco_utl.hh '/srv/sw/nco-4.6.7/include' |
| 12-Jan-2018 16:36:29 | make[3]: Leaving directory '/srv/downloads/nco-4.6.7/src/nco_c++' |
| 12-Jan-2018 16:36:29 | make[2]: Leaving directory '/srv/downloads/nco-4.6.7/src/nco_c++' |
| 12-Jan-2018 16:36:29 | Making install in nco++ |
| 12-Jan-2018 16:36:29 | make[2]: Entering directory '/srv/downloads/nco-4.6.7/src/nco++' |
| 12-Jan-2018 16:36:29 | make[3]: Entering directory '/srv/downloads/nco-4.6.7/src/nco++' |
| 12-Jan-2018 16:36:29 | /bin/mkdir -p '/srv/sw/nco-4.6.7/bin' |
| 12-Jan-2018 16:36:29 | /bin/bash ../../libtool --tag=CXX --mode=install /usr/bin/install -c ncap2 '/srv/sw/nco-4.6.7/bin' |
| 12-Jan-2018 16:36:29 | libtool: install: /usr/bin/install -c .libs/ncap2 /srv/sw/nco-4.6.7/bin/ncap2 |
| 12-Jan-2018 16:36:29 | make[3]: Nothing to be done for 'install-data-am'. |
| 12-Jan-2018 16:36:29 | make[3]: Leaving directory '/srv/downloads/nco-4.6.7/src/nco++' |
| 12-Jan-2018 16:36:29 | make[2]: Leaving directory '/srv/downloads/nco-4.6.7/src/nco++' |
| 12-Jan-2018 16:36:29 | make[2]: Entering directory '/srv/downloads/nco-4.6.7/src' |
| 12-Jan-2018 16:36:29 | make[3]: Entering directory '/srv/downloads/nco-4.6.7/src' |
| 12-Jan-2018 16:36:29 | make[3]: Nothing to be done for 'install-exec-am'. |
| 12-Jan-2018 16:36:29 | make[3]: Nothing to be done for 'install-data-am'. |
| 12-Jan-2018 16:36:29 | make[3]: Leaving directory '/srv/downloads/nco-4.6.7/src' |
| 12-Jan-2018 16:36:29 | make[2]: Leaving directory '/srv/downloads/nco-4.6.7/src' |
| 12-Jan-2018 16:36:29 | make[1]: Leaving directory '/srv/downloads/nco-4.6.7/src' |
| 12-Jan-2018 16:36:29 | Making install in man |
| 12-Jan-2018 16:36:29 | make[1]: Entering directory '/srv/downloads/nco-4.6.7/man' |
| 12-Jan-2018 16:36:29 | make[2]: Entering directory '/srv/downloads/nco-4.6.7/man' |
| 12-Jan-2018 16:36:29 | make[2]: Nothing to be done for 'install-exec-am'. |
| 12-Jan-2018 16:36:29 | /bin/mkdir -p '/srv/sw/nco-4.6.7/share/man/man1' |
| 12-Jan-2018 16:36:29 | /usr/bin/install -c -m 644 ncap.1 ncap2.1 ncatted.1 ncbo.1 ncclimo.1 nces.1 ncecat.1 ncflint.1 ncks.1 nco.1 ncra.1 ncremap.1 ncrename.1 ncpdq.1 ncrcat.1 ncwa.1 '/srv/sw/nco-4.6.7/share/man/man1' |
| 12-Jan-2018 16:36:29 | make[2]: Leaving directory '/srv/downloads/nco-4.6.7/man' |
| 12-Jan-2018 16:36:29 | make[1]: Leaving directory '/srv/downloads/nco-4.6.7/man' |
| 12-Jan-2018 16:36:29 | make[1]: Entering directory '/srv/downloads/nco-4.6.7' |
| 12-Jan-2018 16:36:29 | make[2]: Entering directory '/srv/downloads/nco-4.6.7' |
| 12-Jan-2018 16:36:29 | make[2]: Nothing to be done for 'install-exec-am'. |
| 12-Jan-2018 16:36:29 | make[2]: Nothing to be done for 'install-data-am'. |
| 12-Jan-2018 16:36:29 | make[2]: Leaving directory '/srv/downloads/nco-4.6.7' |
| 12-Jan-2018 16:36:29 | make[1]: Leaving directory '/srv/downloads/nco-4.6.7' |
| 12-Jan-2018 16:36:31 | ---> 981cc654968c |
| 12-Jan-2018 16:36:31 | Removing intermediate container 2f38d26e3baa |
| 12-Jan-2018 16:36:31 | Step 17/31 : ENV PATH "/srv/sw/nco-4.6.7/bin:${PATH}" LD_LIBRARY_PATH "/srv/sw/nco-4.6.7/lib:${LD_LIBRARY_PATH}" |
| 12-Jan-2018 16:36:32 | ---> Running in eb6ed38cf32e |
| 12-Jan-2018 16:36:32 | ---> cdf315760402 |
| 12-Jan-2018 16:36:32 | Removing intermediate container eb6ed38cf32e |
| 12-Jan-2018 16:36:32 | Step 18/31 : ENV USERHOME "/home/ubuntu" |
| 12-Jan-2018 16:36:32 | ---> Running in 9e37b486d542 |
| 12-Jan-2018 16:36:32 | ---> 67b9d13e642b |
| 12-Jan-2018 16:36:32 | Removing intermediate container 9e37b486d542 |
| 12-Jan-2018 16:36:32 | Step 19/31 : WORKDIR "${USERHOME}" |
| 12-Jan-2018 16:36:33 | ---> 77672948e685 |
| 12-Jan-2018 16:36:33 | Removing intermediate container 76d4c2bdd821 |
| 12-Jan-2018 16:36:33 | Step 20/31 : RUN apt-get install -y python-pip |
| 12-Jan-2018 16:36:33 | ---> Running in b8311d8297fb |
| 12-Jan-2018 16:36:34 | Reading package lists... |
| 12-Jan-2018 16:36:34 | Building dependency tree... |
| 12-Jan-2018 16:36:34 | Reading state information... |
| 12-Jan-2018 16:36:34 | The following additional packages will be installed: |
| 12-Jan-2018 16:36:34 | gir1.2-glib-2.0 libdbus-glib-1-2 libgirepository-1.0-1 libpython-all-dev |
| 12-Jan-2018 16:36:34 | python-all python-all-dev python-cffi-backend python-crypto |
| 12-Jan-2018 16:36:34 | python-cryptography python-dbus python-enum34 python-gi python-idna |
| 12-Jan-2018 16:36:34 | python-ipaddress python-keyring python-keyrings.alt python-pyasn1 |
| 12-Jan-2018 16:36:34 | python-secretstorage python-setuptools python-six python-wheel python-xdg |
| 12-Jan-2018 16:36:34 | Suggested packages: |
| 12-Jan-2018 16:36:34 | python-crypto-dbg python-crypto-doc python-cryptography-doc |
| 12-Jan-2018 16:36:34 | python-cryptography-vectors python-dbus-dbg python-dbus-doc |
| 12-Jan-2018 16:36:34 | python-enum34-doc python-gi-cairo gnome-keyring libkf5wallet-bin |
| 12-Jan-2018 16:36:34 | gir1.2-gnomekeyring-1.0 python-fs python-gdata python-kde4 python-keyczar |
| 12-Jan-2018 16:36:34 | doc-base python-secretstorage-doc python-setuptools-doc |
| 12-Jan-2018 16:36:34 | The following NEW packages will be installed: |
| 12-Jan-2018 16:36:34 | gir1.2-glib-2.0 libdbus-glib-1-2 libgirepository-1.0-1 libpython-all-dev |
| 12-Jan-2018 16:36:34 | python-all python-all-dev python-cffi-backend python-crypto |
| 12-Jan-2018 16:36:34 | python-cryptography python-dbus python-enum34 python-gi python-idna |
| 12-Jan-2018 16:36:34 | python-ipaddress python-keyring python-keyrings.alt python-pip python-pyasn1 |
| 12-Jan-2018 16:36:34 | python-secretstorage python-setuptools python-six python-wheel python-xdg |
| 12-Jan-2018 16:36:34 | 0 upgraded, 23 newly installed, 0 to remove and 0 not upgraded. |
| 12-Jan-2018 16:36:34 | Need to get 2462 kB of archives. |
| 12-Jan-2018 16:36:34 | After this operation, 9245 kB of additional disk space will be used. |
| 12-Jan-2018 16:36:34 | Get:1 http://deb.debian.org/debian stretch/main amd64 libgirepository-1.0-1 amd64 1.50.0-1+b1 [89.0 kB] |
| 12-Jan-2018 16:36:34 | Get:2 http://deb.debian.org/debian stretch/main amd64 gir1.2-glib-2.0 amd64 1.50.0-1+b1 [139 kB] |
| 12-Jan-2018 16:36:34 | Get:3 http://deb.debian.org/debian stretch/main amd64 libdbus-glib-1-2 amd64 0.108-2 [206 kB] |
| 12-Jan-2018 16:36:34 | Get:4 http://deb.debian.org/debian stretch/main amd64 libpython-all-dev amd64 2.7.13-2 [960 B] |
| 12-Jan-2018 16:36:34 | Get:5 http://deb.debian.org/debian stretch/main amd64 python-all amd64 2.7.13-2 [942 B] |
| 12-Jan-2018 16:36:34 | Get:6 http://deb.debian.org/debian stretch/main amd64 python-all-dev amd64 2.7.13-2 [962 B] |
| 12-Jan-2018 16:36:34 | Get:7 http://deb.debian.org/debian stretch/main amd64 python-cffi-backend amd64 1.9.1-2 [69.0 kB] |
| 12-Jan-2018 16:36:34 | Get:8 http://deb.debian.org/debian stretch/main amd64 python-crypto amd64 2.6.1-7 [259 kB] |
| 12-Jan-2018 16:36:34 | Get:9 http://deb.debian.org/debian stretch/main amd64 python-enum34 all 1.1.6-1 [35.0 kB] |
| 12-Jan-2018 16:36:34 | Get:10 http://deb.debian.org/debian stretch/main amd64 python-idna all 2.2-1 [32.6 kB] |
| 12-Jan-2018 16:36:34 | Get:11 http://deb.debian.org/debian stretch/main amd64 python-ipaddress all 1.0.17-1 [18.1 kB] |
| 12-Jan-2018 16:36:34 | Get:12 http://deb.debian.org/debian stretch/main amd64 python-pyasn1 all 0.1.9-2 [51.8 kB] |
| 12-Jan-2018 16:36:34 | Get:13 http://deb.debian.org/debian stretch/main amd64 python-setuptools all 33.1.1-1 [297 kB] |
| 12-Jan-2018 16:36:34 | Get:14 http://deb.debian.org/debian stretch/main amd64 python-six all 1.10.0-3 [14.4 kB] |
| 12-Jan-2018 16:36:34 | Get:15 http://deb.debian.org/debian stretch/main amd64 python-cryptography amd64 1.7.1-3 [211 kB] |
| 12-Jan-2018 16:36:34 | Get:16 http://deb.debian.org/debian stretch/main amd64 python-dbus amd64 1.2.4-1+b1 [185 kB] |
| 12-Jan-2018 16:36:34 | Get:17 http://deb.debian.org/debian stretch/main amd64 python-gi amd64 3.22.0-2 [515 kB] |
| 12-Jan-2018 16:36:34 | Get:18 http://deb.debian.org/debian stretch/main amd64 python-secretstorage all 2.3.1-2 [13.8 kB] |
| 12-Jan-2018 16:36:34 | Get:19 http://deb.debian.org/debian stretch/main amd64 python-keyring all 10.1-1 [40.7 kB] |
| 12-Jan-2018 16:36:34 | Get:20 http://deb.debian.org/debian stretch/main amd64 python-keyrings.alt all 1.3-1 [16.4 kB] |
| 12-Jan-2018 16:36:34 | Get:21 http://deb.debian.org/debian stretch/main amd64 python-pip all 9.0.1-2 [179 kB] |
| 12-Jan-2018 16:36:34 | Get:22 http://deb.debian.org/debian stretch/main amd64 python-wheel all 0.29.0-2 [51.7 kB] |
| 12-Jan-2018 16:36:34 | Get:23 http://deb.debian.org/debian stretch/main amd64 python-xdg all 0.25-4 [35.8 kB] |
| 12-Jan-2018 16:36:35 | debconf: delaying package configuration, since apt-utils is not installed |
| 12-Jan-2018 16:36:35 | Fetched 2462 kB in 0s (36.4 MB/s) |
| 12-Jan-2018 16:36:35 | Selecting previously unselected package libgirepository-1.0-1:amd64. |
| 12-Jan-2018 16:36:35 | (Reading database ... |
| 12-Jan-2018 16:36:35 | (Reading database ... 5% |
| 12-Jan-2018 16:36:35 | (Reading database ... 10% |
| 12-Jan-2018 16:36:35 | (Reading database ... 15% |
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| 12-Jan-2018 16:36:35 | (Reading database ... 25% |
| 12-Jan-2018 16:36:35 | (Reading database ... 30% |
| 12-Jan-2018 16:36:35 | (Reading database ... 35% |
| 12-Jan-2018 16:36:35 | (Reading database ... 40% |
| 12-Jan-2018 16:36:35 | (Reading database ... 45% |
| 12-Jan-2018 16:36:35 | (Reading database ... 50% |
| 12-Jan-2018 16:36:35 | (Reading database ... 55% |
| 12-Jan-2018 16:36:35 | (Reading database ... 60% |
| 12-Jan-2018 16:36:35 | (Reading database ... 65% |
| 12-Jan-2018 16:36:35 | (Reading database ... 70% |
| 12-Jan-2018 16:36:35 | (Reading database ... 75% |
| 12-Jan-2018 16:36:35 | (Reading database ... 80% |
| 12-Jan-2018 16:36:35 | (Reading database ... 85% |
| 12-Jan-2018 16:36:35 | (Reading database ... 90% |
| 12-Jan-2018 16:36:35 | (Reading database ... 95% |
| 12-Jan-2018 16:36:35 | (Reading database ... 100% |
| 12-Jan-2018 16:36:35 | (Reading database ... 39583 files and directories currently installed.) |
| 12-Jan-2018 16:36:35 | Preparing to unpack .../00-libgirepository-1.0-1_1.50.0-1+b1_amd64.deb ... |
| 12-Jan-2018 16:36:35 | Unpacking libgirepository-1.0-1:amd64 (1.50.0-1+b1) ... |
| 12-Jan-2018 16:36:35 | Selecting previously unselected package gir1.2-glib-2.0:amd64. |
| 12-Jan-2018 16:36:35 | Preparing to unpack .../01-gir1.2-glib-2.0_1.50.0-1+b1_amd64.deb ... |
| 12-Jan-2018 16:36:36 | Unpacking gir1.2-glib-2.0:amd64 (1.50.0-1+b1) ... |
| 12-Jan-2018 16:36:36 | Selecting previously unselected package libdbus-glib-1-2:amd64. |
| 12-Jan-2018 16:36:36 | Preparing to unpack .../02-libdbus-glib-1-2_0.108-2_amd64.deb ... |
| 12-Jan-2018 16:36:36 | Unpacking libdbus-glib-1-2:amd64 (0.108-2) ... |
| 12-Jan-2018 16:36:37 | Selecting previously unselected package libpython-all-dev:amd64. |
| 12-Jan-2018 16:36:37 | Preparing to unpack .../03-libpython-all-dev_2.7.13-2_amd64.deb ... |
| 12-Jan-2018 16:36:37 | Unpacking libpython-all-dev:amd64 (2.7.13-2) ... |
| 12-Jan-2018 16:36:37 | Selecting previously unselected package python-all. |
| 12-Jan-2018 16:36:37 | Preparing to unpack .../04-python-all_2.7.13-2_amd64.deb ... |
| 12-Jan-2018 16:36:37 | Unpacking python-all (2.7.13-2) ... |
| 12-Jan-2018 16:36:37 | Selecting previously unselected package python-all-dev. |
| 12-Jan-2018 16:36:37 | Preparing to unpack .../05-python-all-dev_2.7.13-2_amd64.deb ... |
| 12-Jan-2018 16:36:37 | Unpacking python-all-dev (2.7.13-2) ... |
| 12-Jan-2018 16:36:38 | Selecting previously unselected package python-cffi-backend. |
| 12-Jan-2018 16:36:38 | Preparing to unpack .../06-python-cffi-backend_1.9.1-2_amd64.deb ... |
| 12-Jan-2018 16:36:38 | Unpacking python-cffi-backend (1.9.1-2) ... |
| 12-Jan-2018 16:36:38 | Selecting previously unselected package python-crypto. |
| 12-Jan-2018 16:36:38 | Preparing to unpack .../07-python-crypto_2.6.1-7_amd64.deb ... |
| 12-Jan-2018 16:36:38 | Unpacking python-crypto (2.6.1-7) ... |
| 12-Jan-2018 16:36:38 | Selecting previously unselected package python-enum34. |
| 12-Jan-2018 16:36:38 | Preparing to unpack .../08-python-enum34_1.1.6-1_all.deb ... |
| 12-Jan-2018 16:36:38 | Unpacking python-enum34 (1.1.6-1) ... |
| 12-Jan-2018 16:36:39 | Selecting previously unselected package python-idna. |
| 12-Jan-2018 16:36:39 | Preparing to unpack .../09-python-idna_2.2-1_all.deb ... |
| 12-Jan-2018 16:36:39 | Unpacking python-idna (2.2-1) ... |
| 12-Jan-2018 16:36:39 | Selecting previously unselected package python-ipaddress. |
| 12-Jan-2018 16:36:39 | Preparing to unpack .../10-python-ipaddress_1.0.17-1_all.deb ... |
| 12-Jan-2018 16:36:39 | Unpacking python-ipaddress (1.0.17-1) ... |
| 12-Jan-2018 16:36:40 | Selecting previously unselected package python-pyasn1. |
| 12-Jan-2018 16:36:40 | Preparing to unpack .../11-python-pyasn1_0.1.9-2_all.deb ... |
| 12-Jan-2018 16:36:40 | Unpacking python-pyasn1 (0.1.9-2) ... |
| 12-Jan-2018 16:36:40 | Selecting previously unselected package python-setuptools. |
| 12-Jan-2018 16:36:40 | Preparing to unpack .../12-python-setuptools_33.1.1-1_all.deb ... |
| 12-Jan-2018 16:36:40 | Unpacking python-setuptools (33.1.1-1) ... |
| 12-Jan-2018 16:36:40 | Selecting previously unselected package python-six. |
| 12-Jan-2018 16:36:40 | Preparing to unpack .../13-python-six_1.10.0-3_all.deb ... |
| 12-Jan-2018 16:36:40 | Unpacking python-six (1.10.0-3) ... |
| 12-Jan-2018 16:36:41 | Selecting previously unselected package python-cryptography. |
| 12-Jan-2018 16:36:41 | Preparing to unpack .../14-python-cryptography_1.7.1-3_amd64.deb ... |
| 12-Jan-2018 16:36:41 | Unpacking python-cryptography (1.7.1-3) ... |
| 12-Jan-2018 16:36:41 | Selecting previously unselected package python-dbus. |
| 12-Jan-2018 16:36:41 | Preparing to unpack .../15-python-dbus_1.2.4-1+b1_amd64.deb ... |
| 12-Jan-2018 16:36:41 | Unpacking python-dbus (1.2.4-1+b1) ... |
| 12-Jan-2018 16:36:42 | Selecting previously unselected package python-gi. |
| 12-Jan-2018 16:36:42 | Preparing to unpack .../16-python-gi_3.22.0-2_amd64.deb ... |
| 12-Jan-2018 16:36:42 | Unpacking python-gi (3.22.0-2) ... |
| 12-Jan-2018 16:36:42 | Selecting previously unselected package python-secretstorage. |
| 12-Jan-2018 16:36:42 | Preparing to unpack .../17-python-secretstorage_2.3.1-2_all.deb ... |
| 12-Jan-2018 16:36:42 | Unpacking python-secretstorage (2.3.1-2) ... |
| 12-Jan-2018 16:36:43 | Selecting previously unselected package python-keyring. |
| 12-Jan-2018 16:36:43 | Preparing to unpack .../18-python-keyring_10.1-1_all.deb ... |
| 12-Jan-2018 16:36:43 | Unpacking python-keyring (10.1-1) ... |
| 12-Jan-2018 16:36:43 | Selecting previously unselected package python-keyrings.alt. |
| 12-Jan-2018 16:36:43 | Preparing to unpack .../19-python-keyrings.alt_1.3-1_all.deb ... |
| 12-Jan-2018 16:36:43 | Unpacking python-keyrings.alt (1.3-1) ... |
| 12-Jan-2018 16:36:44 | Selecting previously unselected package python-pip. |
| 12-Jan-2018 16:36:44 | Preparing to unpack .../20-python-pip_9.0.1-2_all.deb ... |
| 12-Jan-2018 16:36:44 | Unpacking python-pip (9.0.1-2) ... |
| 12-Jan-2018 16:36:44 | Selecting previously unselected package python-wheel. |
| 12-Jan-2018 16:36:44 | Preparing to unpack .../21-python-wheel_0.29.0-2_all.deb ... |
| 12-Jan-2018 16:36:44 | Unpacking python-wheel (0.29.0-2) ... |
| 12-Jan-2018 16:36:44 | Selecting previously unselected package python-xdg. |
| 12-Jan-2018 16:36:44 | Preparing to unpack .../22-python-xdg_0.25-4_all.deb ... |
| 12-Jan-2018 16:36:44 | Unpacking python-xdg (0.25-4) ... |
| 12-Jan-2018 16:36:45 | Setting up python-idna (2.2-1) ... |
| 12-Jan-2018 16:36:46 | Setting up python-setuptools (33.1.1-1) ... |
| 12-Jan-2018 16:36:47 | Setting up python-crypto (2.6.1-7) ... |
| 12-Jan-2018 16:36:48 | Setting up libdbus-glib-1-2:amd64 (0.108-2) ... |
| 12-Jan-2018 16:36:48 | Setting up python-pyasn1 (0.1.9-2) ... |
| 12-Jan-2018 16:36:49 | Setting up python-wheel (0.29.0-2) ... |
| 12-Jan-2018 16:36:50 | Setting up libpython-all-dev:amd64 (2.7.13-2) ... |
| 12-Jan-2018 16:36:50 | Setting up libgirepository-1.0-1:amd64 (1.50.0-1+b1) ... |
| 12-Jan-2018 16:36:50 | Setting up python-keyrings.alt (1.3-1) ... |
| 12-Jan-2018 16:36:51 | Setting up python-cffi-backend (1.9.1-2) ... |
| 12-Jan-2018 16:36:52 | Setting up python-six (1.10.0-3) ... |
| 12-Jan-2018 16:36:53 | Setting up gir1.2-glib-2.0:amd64 (1.50.0-1+b1) ... |
| 12-Jan-2018 16:36:53 | Processing triggers for libc-bin (2.24-11+deb9u1) ... |
| 12-Jan-2018 16:36:53 | Setting up python-enum34 (1.1.6-1) ... |
| 12-Jan-2018 16:36:54 | Setting up python-dbus (1.2.4-1+b1) ... |
| 12-Jan-2018 16:36:54 | Remove stale byte-compiled files... |
| 12-Jan-2018 16:36:55 | Setting up python-ipaddress (1.0.17-1) ... |
| 12-Jan-2018 16:36:56 | Setting up python-pip (9.0.1-2) ... |
| 12-Jan-2018 16:36:57 | Setting up python-all (2.7.13-2) ... |
| 12-Jan-2018 16:36:58 | Setting up python-xdg (0.25-4) ... |
| 12-Jan-2018 16:36:59 | Setting up python-gi (3.22.0-2) ... |
| 12-Jan-2018 16:37:00 | Setting up python-all-dev (2.7.13-2) ... |
| 12-Jan-2018 16:37:00 | Setting up python-cryptography (1.7.1-3) ... |
| 12-Jan-2018 16:37:01 | Setting up python-secretstorage (2.3.1-2) ... |
| 12-Jan-2018 16:37:02 | Setting up python-keyring (10.1-1) ... |
| 12-Jan-2018 16:37:04 | ---> e957c38eee92 |
| 12-Jan-2018 16:37:04 | Removing intermediate container b8311d8297fb |
| 12-Jan-2018 16:37:04 | Step 21/31 : RUN cd ${USERHOME} && CC=gcc CXX=g++ USE_SETUPCFG=0 HDF5_INCDIR=/srv/sw/hdf5-1.8.17/include HDF5_LIBDIR=/srv/sw/hdf5-1.8.17/lib NETCDF4_INCDIR=/srv/sw/netcdf-4.4.1/include NETCDF4_LIBDIR=/srv/sw/netcdf-4.4.1/lib pip install netCDF4 |
| 12-Jan-2018 16:37:04 | ---> Running in f944aac153a6 |
| 12-Jan-2018 16:37:06 | Collecting netCDF4 |
| 12-Jan-2018 16:37:06 | Downloading netCDF4-1.3.1-cp27-cp27mu-manylinux1_x86_64.whl (5.8MB) |
| 12-Jan-2018 16:37:07 | Requirement already satisfied: numpy>=1.7 in /usr/lib/python2.7/dist-packages (from netCDF4) |
| 12-Jan-2018 16:37:07 | Installing collected packages: netCDF4 |
| 12-Jan-2018 16:37:07 | Successfully installed netCDF4-1.3.1 |
| 12-Jan-2018 16:37:08 | ---> 3bdfcfda1392 |
| 12-Jan-2018 16:37:08 | Removing intermediate container f944aac153a6 |
| 12-Jan-2018 16:37:08 | Step 22/31 : ENV INPUTDIR "${USERHOME}/input" |
| 12-Jan-2018 16:37:08 | ---> Running in 7a01d6454167 |
| 12-Jan-2018 16:37:08 | ---> 250d2a57f7cd |
| 12-Jan-2018 16:37:08 | Removing intermediate container 7a01d6454167 |
| 12-Jan-2018 16:37:08 | Step 23/31 : RUN mkdir -p "${INPUTDIR}" && mkdir -p "${USERHOME}/logs" |
| 12-Jan-2018 16:37:08 | ---> Running in 52428ff9fcc5 |
| 12-Jan-2018 16:37:09 | ---> 0d90496887c5 |
| 12-Jan-2018 16:37:09 | Removing intermediate container 52428ff9fcc5 |
| 12-Jan-2018 16:37:09 | Step 24/31 : USER root |
| 12-Jan-2018 16:37:10 | ---> Running in 9d289571f19b |
| 12-Jan-2018 16:37:10 | ---> c9611b27f010 |
| 12-Jan-2018 16:37:10 | Removing intermediate container 9d289571f19b |
| 12-Jan-2018 16:37:10 | Step 25/31 : RUN /bin/sed -i -e 's/^\([^#]*Scripts=\)/#\1/' -e 's/^#\(ShellScripts=\)/\1/' /home/polyglot/polyglot/SoftwareServer.conf |
| 12-Jan-2018 16:37:10 | ---> Running in 15cc4cdfd2be |
| 12-Jan-2018 16:37:11 | ---> d84c33f0fd24 |
| 12-Jan-2018 16:37:11 | Removing intermediate container 15cc4cdfd2be |
| 12-Jan-2018 16:37:11 | Step 26/31 : RUN echo "hyperspectral" > /home/polyglot/polyglot/scripts/sh/.aliases.txt |
| 12-Jan-2018 16:37:11 | ---> Running in a746e4c88d79 |
| 12-Jan-2018 16:37:12 | ---> 116c5ca2503c |
| 12-Jan-2018 16:37:12 | Removing intermediate container a746e4c88d79 |
| 12-Jan-2018 16:37:12 | Step 27/31 : COPY hyperspectral_workflow.sh batch_launcher.sh *.py *.nc *.nco /home/polyglot/polyglot/scripts/sh/auxiliary/ |
| 12-Jan-2018 16:37:13 | ---> ec0861e471f3 |
| 12-Jan-2018 16:37:13 | Removing intermediate container 38079b701283 |
| 12-Jan-2018 16:37:13 | Step 28/31 : COPY hyperspectral_convert.sh /home/polyglot/polyglot/scripts/sh/ |
| 12-Jan-2018 16:37:14 | ---> c962be32bf9d |
| 12-Jan-2018 16:37:14 | Removing intermediate container f5dc0a4d9a63 |
| 12-Jan-2018 16:37:14 | Step 29/31 : RUN chown polyglot /home/polyglot/polyglot/scripts/sh/hyperspectral_convert.sh && chmod +x /home/polyglot/polyglot/scripts/sh/hyperspectral_convert.sh |
| 12-Jan-2018 16:37:14 | ---> Running in 0a15b0c0da91 |
| 12-Jan-2018 16:37:15 | ---> 115a07760e40 |
| 12-Jan-2018 16:37:15 | Removing intermediate container 0a15b0c0da91 |
| 12-Jan-2018 16:37:15 | Step 30/31 : RUN chmod +x /home/polyglot/polyglot/scripts/sh/auxiliary/hyperspectral_workflow.sh |
| 12-Jan-2018 16:37:15 | ---> Running in f2b952a066e1 |
| 12-Jan-2018 16:37:17 | ---> 1ab766994c1f |
| 12-Jan-2018 16:37:17 | Removing intermediate container f2b952a066e1 |
| 12-Jan-2018 16:37:17 | Step 31/31 : CMD softwareserver |
| 12-Jan-2018 16:37:17 | ---> Running in 7d562af855f9 |
| 12-Jan-2018 16:37:17 | ---> 8c5223ee4ac8 |
| 12-Jan-2018 16:37:17 | Removing intermediate container 7d562af855f9 |
| 12-Jan-2018 16:37:17 | Successfully built 8c5223ee4ac8 |
| 12-Jan-2018 16:37:17 | The push refers to a repository [docker.io/ncsapolyglot/converters-hyperspectral] |
| 12-Jan-2018 16:37:17 | cd59acf38f8d: Preparing |
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| 12-Jan-2018 16:37:32 | 57fcce6ce224: Mounted from ncsapolyglot/converters-ghostscript |
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| 12-Jan-2018 16:37:45 | acfc3272746b: Pushed |
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| 12-Jan-2018 16:38:33 | browndog_v0.3.0: digest: sha256:da4f70d557d702b9d02fc0718e27e1fbeec7cb07f4bf8498f460eef016cd7d06 size: 6616 |
| 12-Jan-2018 16:38:33 | The push refers to a repository [docker.io/ncsapolyglot/converters-hyperspectral] |
| 12-Jan-2018 16:38:33 | cd59acf38f8d: Preparing |
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| 12-Jan-2018 16:38:34 | e27a10675c56: Layer already exists |
| 12-Jan-2018 16:38:35 | latest: digest: sha256:da4f70d557d702b9d02fc0718e27e1fbeec7cb07f4bf8498f460eef016cd7d06 size: 6616 |
| 12-Jan-2018 16:38:35 | Untagged: 13836:latest |
| 12-Jan-2018 16:38:35 | Finished task 'docker build' with result: Success |
| 12-Jan-2018 16:38:35 | Running post build plugin 'Docker Container Cleanup' |
| 12-Jan-2018 16:38:35 | Running post build plugin 'NCover Results Collector' |
| 12-Jan-2018 16:38:35 | Running post build plugin 'Clover Results Collector' |
| 12-Jan-2018 16:38:35 | Running post build plugin 'npm Cache Cleanup' |
| 12-Jan-2018 16:38:35 | Running post build plugin 'Artifact Copier' |
| 12-Jan-2018 16:38:35 | Finalising the build... |
| 12-Jan-2018 16:38:35 | Stopping timer. |
| 12-Jan-2018 16:38:35 | Build POL-HYPERSPECTRAL-JOB1-8 completed. |
| 12-Jan-2018 16:38:35 | Running on server: post build plugin 'NCover Results Collector' |
| 12-Jan-2018 16:38:35 | Running on server: post build plugin 'Build Hanging Detection Configuration' |
| 12-Jan-2018 16:38:35 | Running on server: post build plugin 'Clover Delta Calculator' |
| 12-Jan-2018 16:38:35 | Running on server: post build plugin 'Maven Dependencies Postprocessor' |
| 12-Jan-2018 16:38:35 | All post build plugins have finished |
| 12-Jan-2018 16:38:35 | Generating build results summary... |
| 12-Jan-2018 16:38:35 | Saving build results to disk... |
| 12-Jan-2018 16:38:35 | Logging substituted variables... |
| 12-Jan-2018 16:38:35 | Indexing build results... |
| 12-Jan-2018 16:38:35 | Finished building POL-HYPERSPECTRAL-JOB1-8. |