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Scientific

Domain Tool

Description                                     

Repositories
Hydrology





 








Advection DiffusionSolve a general advection-dispersion equation.
Chemical Mean AgeDetermine the mean age of chemical constituents with inputs of chemical dynamics.
Document Tables Extractor (ncsa.nlp.wordtables)Extract tables from documents.https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-nlp/browse/WordTablesExtractor
GDAL (ncsa.geo.shpExtractor)
https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-geo/browse
GDAL (ncsa.geo.tiffExtractor)
https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-geo/browse
GDAL (ncsa.image.geotiff)
https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-geotiff/browse
Historical River Extractor (ncsa.cv.river)Extract the river networks from the ancient hand-drawing maps and compare them with current river networkshttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/river
Normalized Difference Vegetation Index (ncsa.arcgis.landsat7mosaic)
https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-bd-cz/browse/ndviextractor
River Chi IndexIdentify the river dynamics in a river basin and evaluate human activities' influences through Chi index in the streams.https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-bd-cz/browse/chi-analysis
River SinuosityStudy the maturity and equilibrium conditions of a stream through the sinuosity index.
Soil Moisture ChangeDetermine role of hydraulic redistribution in AZ (riparian site / upland site) by studying soil moisture change throughout different seasons.
Species ClassifierSAM based Species Classification from Hyperspectral data, Hyperspectral Indices, NDVI, SAVI, MSAVI, etc.
TerEx (ncsa.arcgis.floodplain)Identify the flat polygons and the heights inside a river valley.  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-bd-cz/browse/terex_floodplain
Topographic DepressionsIdentify topographic depressions (TDs) and their distribution on landscape (Number, location, area, volume of TDs).https://github.com/HydroComplexity/TDI
Valley Safety ZonesEstimate submerging areas and water depths under extreme floods and map the safety zones in a river valley.

Vegetation IndicesCalculating vegetation indices such as NDVI and Surface Temperature from Landsat 7 and 8 satellite data.
EcologyPlantCV (terra.plantcv)Extract plant height, area, and color distribution from photographs.https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-plantcv/browse
Civil & Environmental Engineering




Body of Water Detector (ncsa.image.ponddetect)

Land coverage, extract locations of bodies of water from satellite data.https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-maps/browse/feature_detection
GI Identification

Human Preference Score (ncsa.image.humanpref)Assign a model derived human preference score to a given image of an urban environment.https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-maps/browse/humanpref

Route Greenness (ncsa.xml.greenindexroute)

Derive the green index of a city route.https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-maps/browse/greenroute
Social Media GI Preferences

Stanford CoreNLP - Sentiment (ncsa.nlp.SNLPSentiment)Assign a sentiment score to a piece of text.https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-nlp/browse/SNLP/SNLPSentimentExtractor
TUV Triaxus

Social Science & Humanities













Bertillon Card Cell Extractor (ncsa.image.dmp)Extract table cells from a Bertillon Card.https://opensource.ncsa.illinois.edu/bitbucket/projects/DEBOD/repos/extractors-debod
Census Form Cell Extractor (census-section-segmentor)Extract table cells from a 1930s Census form.https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/census
Handwritten Decimals Extractor (ncsa.image.sphog.debod)Extract handwritten decimal values from an image.https://opensource.ncsa.illinois.edu/bitbucket/projects/DEBOD/repos/extractors-handwrittendecimals
Killed Photos (ncsa.image.iarp_remove_circle)Identify depression era photos "killed" by Farm Security Administration director Roy Stryker, indicated by a hole punch in the image.https://opensource.ncsa.illinois.edu/bitbucket/projects/IARP/repos/image_fetcher/browse/extractors/remove_circle
Mean Grey (ncsa.cv.meangrey)Mean grey values of black and white photos.https://opensource.ncsa.illinois.edu/bitbucket/projects/IARP/repos/image_fetcher/browse/extractors/mean_grey
Movie Slice (ncsa.movieslice)
https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-movieslice/browse
Person Detector (person-detector)Extract locations of people in an image.https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-person-detector
Person Tracker (ncsa.person-tracker)Extract locations and paths of people moving in videos.https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-person-tracking
Video Analytics Toolbox (ncsa.cinemetrics_batch)Extract shot descriptors from videos.https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-lsva-integrated/browse
Biology, Genomics, MedicineFSL (mri2mesh)
https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-mri/browse/mri2mesh
Glomeruli (ncsa.msc.diagnosis)Extract glomeruli from Kidney biopsy images.https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-msc/browse/Kidney

General

Domain

Tool

TypeDescription                                     Repositories



























General





CMU Sphinx (ncsa.audio.speech2text)

ExtractorAudio recognition to extract text for speech within audio.https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-core/browse/audio/speech2text
DBPedia (ncsa.dbpedia)ExtractorFind and define named entities within the given text.https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-dbpedia/browse
ImageMagick (ncsa.image.metadata)ExtractorPull available EXIF image metadata from a given image.https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-core/browse/image/metadata

OpenCV - Faces (ncsa.cv.faces)

ExtractorFind faces in an image and return their locations.https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/extractors-opencv/extractors-opencv-faces

OpenCV - Eyes (ncsa.cv.eyes)

ExtractorFind eyes in an image and return their locations.https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/extractors-opencv/extractors-opencv-eyes

OpenCV - Closeups (ncsa.cv.closeups)

ExtractorDetermine whether an image is a closeup of a person or not.https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/extractors-opencv/extractors-opencv-closeups

OpenCV - Profiles (ncsa.cv.profiles)

ExtractorFind human face profiles in an image and return their locations.https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/extractors-opencv/extractors-opencv-profiles
Langid (ncsa.nlp.simplelanguage)ExtractorIdentify the language of the given text.https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-nlp/browse/SimpleLanguage
NLTK - Summary (ncsa.nlp.simplesummary)ExtractorSummarize a body of text.https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-nlp/browse/SimpleSummary
Siegfried (siegfried)ExtractorExtract information about a given file relevant to identifying its type and validating its format.https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-siegfried/browse
Stanford CoreNLP (ncsa.nlp.SNLP)ExtractorNatural Language Process extractions such as parts of speech, named entities, langauge, etc.https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-nlp/browse/SNLP/SNLPExtractor
Tesseract (ncsa.image.ocr)ExtractorObject Character Recognition (OCR) to extract text from images containing text.https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/extractors-tesseract
Tika (ncsa.nlp.tika)ExtractorDocument extractions such as language identification, ...https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-nlp/browse/tika
Versus - Color Distribution (ncsa.versus.image)ExtractorGenerate a distribution of color values within an image to be used for comparing how similar two images are.https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-versus/browse

VLFeat (ncsa.image.caltech101)

ExtractorClassify images as to whether they contain objects from the Caltech101 dataset (e.g. people, airplanes, motorcycles, cougars, ...).https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/extractors-vlfeat

Older Extractors

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