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No Format
cd ~/biocaddie Rscript 
scripts/compare_treccds.R <collection> <from model> <to model> <topic> <year> 

Results (rm3 compared to be updatedtfidf baseline)

ModelMAPNDCGP@20NDCG@20P@100NDCG@100NotesDate
tfidf0.09570.30170.30.23530.18570.194Sweep b and k106/05/17
Okapi0.0552-0.1831-0.23-0.1824-0.128-0.1477-Sweep b, k1, k306/05/17
QL (JM)0.09710.29010.31670.27080.18270.212Sweep lambda06/05/17
QL (Dir)0.10260.30020.32170.27050.19370.2197+

Sweep mu

06/05/17
QL (TS)0.09760.30010.2950.25550.18570.2145Sweep mu and lambda06/05/17
RM30.1026 0.3002 0.3217 0.27050.1937 0.2197+ Sweep mu, fbDocs, fbTerms, and lambda06/06/17


No Format
root@integration-1:~/biocaddie# Rscript scripts/compare_treccds.R combined tfidf dir orig 2015 
[1] "map 0.0957 0.1026 p= 0.2837" 
[1] "ndcg 0.3017 0.3002 p= 0.5381" 
[1] "P_20 0.3 0.3217 p= 0.2352" 
[1] "ndcg_cut_20 0.2353 0.2705 p= 0.0834" 
[1] "P_100 0.1857 0.1937 p= 0.2639" 
[1] "ndcg_cut_100 0.194 0.2197 p= 0.0396" 
root@integration-1:~/biocaddie# Rscript scripts/compare_treccds.R combined tfidf jm orig 2015 
[1] "map 0.0957 0.0971 p= 0.4594" 
[1] "ndcg 0.3017 0.2901 p= 0.7606" 
[1] "P_20 0.3 0.3167 p= 0.3204" 
[1] "ndcg_cut_20 0.2353 0.2708 p= 0.1038" 
[1] "P_100 0.1857 0.1827 p= 0.5918" 
[1] "ndcg_cut_100 0.194 0.212 p= 0.1283" 
root@integration-1:~/biocaddie# Rscript scripts/compare_treccds.R combined tfidf okapi orig 2015 
[1] "map 0.0957 0.0552 p= 0.9997" 
[1] "ndcg 0.3017 0.1831 p= 1" 
[1] "P_20 0.3 0.23 p= 0.9979" 
[1] "ndcg_cut_20 0.2353 0.1824 p= 0.9991" 
[1] "P_100 0.1857 0.128 p= 0.9999" 
[1] "ndcg_cut_100 0.194 0.1477 p= 0.9993" 
root@integration-1:~/biocaddie# Rscript scripts/compare_treccds.R combined tfidf two orig 2015 
[1] "map 0.0957 0.0976 p= 0.432" 
[1] "ndcg 0.3017 0.3001 p= 0.5467" 
[1] "P_20 0.3 0.295 p= 0.5667" 
[1] "ndcg_cut_20 0.2353 0.2555 p= 0.2152" 
[1] "P_100 0.1857 0.1857 p= 0.5" 
[1] "ndcg_cut_100 0.194 0.2145 p= 0.0652"
root@integration-1:~/biocaddie/scripts# ./compare_treccds.R combined tfidf dir orig 2015
[1] "map 0.0957 0.1026 p= 0.2837"
[1] "ndcg 0.3017 0.3002 p= 0.5381"
[1] "P_20 0.3 0.3217 p= 0.2352"
[1] "ndcg_cut_20 0.2353 0.2705 p= 0.0834"
[1] "P_100 0.1857 0.1937 p= 0.2639"
[1] "ndcg_cut_100 0.194 0.2197 p= 0.0396"


2. TREC CDS 2016 collection (http://trec-cds.appspot.com/2016.html)

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