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Signing Up
- (Done) User/Developer signs up on BrownDog webpage
- (Done) User receives email with more information and link to survey
- (Automatic email) User fills out survey
- (Done) User is contacted by Brown Dog developer and account is activated
- (Not for April 4) Tools catalog support for single sign-in
Creating and Adding a New Tool
- (Gregory Jansen, Rui Liu) Developer downloads BrownDog development environment in docker container (in dockerhub, link on BD webpage)
- Contains running Clowder instance, Polyglot instance, basic development tools, mabye even an IDE configured and ready to go
- Contains a bare-bones extractor ready to be modified for a new tool (with comments suggesting where to edit)
- Contains a bare-bones converter ready to be modified for a new tool (with comments suggesting where to edit)
- (Gregory Jansen, Smruti Padhy) Developer installs tool, creates BrownDog interface script(s)
- Adds sample input file(s)
- Example extractor: imagemagick edge detector
- Example converter: imagemagick jpg to ico converter
- (Gregory Jansen, Smruti Padhy)Developer creates dockerfile
- For extractors this should contain only the tool, its dependencies, and the extractor
- For converters this should contain the basic Polyglot setup, ideally only the Software Server, the tool, its dependencies, and the converter interface script
- (Rui Liu) Developer submits tool to Tools Catalog (using BrownDog account)
- (Done) BrownDog interface script(s), dockerfile, sample input, sample output
- (Done) Through web interface
- Through script in development environment (probably the ideal way)
BD-962
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Getting issue details...
STATUS
- (Inna Zharnitsky, Marcus Slavenas) Admin reviews and tests tool by pressing button which deploys tool in a separate Clowder/Polyglot sandbox, passes in the given input file, and checks the obtained output file against what is provided
- Manual review source code and docker file
- If ok, reviewer submits tool for testing from tool catalog ui
BD-968
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Getting issue details...
STATUS
BD-969
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Getting issue details...
STATUS
- Build docker image using local parameters
- If user provides sample output run script to test inputs/outputs
- if not, manual inspections is required
- Scripts show pass/fail in tool script
- Admin click accept or reject
- (Rui Liu) Admin deploys tool by selecting instances to deploy interface on
BD-916
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Getting issue details...
STATUS
BD-954
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Getting issue details...
STATUS
BD-733
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Getting issue details...
STATUS
- e.g. dts-dev or dts
- selects minimum number of instances to provision (e.g. 5 instances)
- presses button to deploy
- (Sandeep Puthanveetil Satheesan) Admin receives status page showing number of tools deployed and where, load on each tool, etc...
- No support for this at this time.
- How to pull this from MongoDB
Using a Tool
- (Luigi Marini) API Gateway with keys and tokens (uses Crowd credentials)
- (Not for April 4) Forwarding user credentials to Clowder
- Clients
- (Jong Lee, Eugene Roeder) Simple web interface (requires BrownDog account)
- Web form with field box for file URL or upload
- Tool selection dropdown box (means of selecting a specific tool)
- Output select dropdown box (means of allowing system to select tool)
- Clowder will run all relevant extractors (obtained by selecting "json" as the output)
- Polyglot will use I/O-graph
- Suggestions pane will update below
- REST API performing this same operation
- Python code in Jupyter lab notebook
- R code
- Matlab code
- curl commands
- php